NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1565520954|ref|NP_001355189|]
View 

transmembrane protein 234 isoform 6 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TMEM234 super family cl46810
Putative transmembrane family 234; TMEM234 is a family of putative inner membrane proteins. ...
 5-74 3.21e-28

Putative transmembrane family 234; TMEM234 is a family of putative inner membrane proteins. Many bacterial members are annotated as putative L-Ara4N-phosphoundecaprenol flippase subunit ArnE, and as inner membrane proteins. They may be transporters of the multi-drug-resistant superfamily.


The actual alignment was detected with superfamily member pfam10639:

Pssm-ID: 481150  Cd Length: 113  Bit Score: 97.74  E-value: 3.21e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565520954   5 YLMPFLLNQSGSLLYYLTLASTDLTLAVPICNSLAIVFTLIVGKVLGEDIGGKEAVAGMVLTITGITVCI 74
Cdd:pfam10639  44 YLIPFLLNQSGSVVFFYTLGSTDLSLAVPIANSLSFVFTVLTGWLLGEKVLGKKTYLGMGLVVAGTALCV 113
 
Name Accession Description Interval E-value
TMEM234 pfam10639
Putative transmembrane family 234; TMEM234 is a family of putative inner membrane proteins. ...
 5-74 3.21e-28

Putative transmembrane family 234; TMEM234 is a family of putative inner membrane proteins. Many bacterial members are annotated as putative L-Ara4N-phosphoundecaprenol flippase subunit ArnE, and as inner membrane proteins. They may be transporters of the multi-drug-resistant superfamily.


Pssm-ID: 371174  Cd Length: 113  Bit Score: 97.74  E-value: 3.21e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565520954   5 YLMPFLLNQSGSLLYYLTLASTDLTLAVPICNSLAIVFTLIVGKVLGEDIGGKEAVAGMVLTITGITVCI 74
Cdd:pfam10639  44 YLIPFLLNQSGSVVFFYTLGSTDLSLAVPIANSLSFVFTVLTGWLLGEKVLGKKTYLGMGLVVAGTALCV 113
 
Name Accession Description Interval E-value
TMEM234 pfam10639
Putative transmembrane family 234; TMEM234 is a family of putative inner membrane proteins. ...
 5-74 3.21e-28

Putative transmembrane family 234; TMEM234 is a family of putative inner membrane proteins. Many bacterial members are annotated as putative L-Ara4N-phosphoundecaprenol flippase subunit ArnE, and as inner membrane proteins. They may be transporters of the multi-drug-resistant superfamily.


Pssm-ID: 371174  Cd Length: 113  Bit Score: 97.74  E-value: 3.21e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1565520954   5 YLMPFLLNQSGSLLYYLTLASTDLTLAVPICNSLAIVFTLIVGKVLGEDIGGKEAVAGMVLTITGITVCI 74
Cdd:pfam10639  44 YLIPFLLNQSGSVVFFYTLGSTDLSLAVPIANSLSFVFTVLTGWLLGEKVLGKKTYLGMGLVVAGTALCV 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH