|
Name |
Accession |
Description |
Interval |
E-value |
| TMTC_DUF1736 |
pfam08409 |
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ... |
169-242 |
5.22e-39 |
|
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.
Pssm-ID: 462468 Cd Length: 75 Bit Score: 138.82 E-value: 5.22e-39
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1488192473 169 QSQLPVFTRFDNPAAVSPTP-TRQLTFNYLLPVNAWLLLNPSELCCDWTMGTIPLIESLLDIRNLATFTFFCFLG 242
Cdd:pfam08409 1 GGQLPVFSASDNPAAFSPSLlTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
350-579 |
3.85e-36 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 137.06 E-value: 3.85e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 350 LKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkK 429
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADY--------------E 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 430 YAARIAPNHLNVYINLANlIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNAD 509
Cdd:COG0457 67 QALELDPDDAEALNNLGL-ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 510 LWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKLRPEARKRLLSYINEEPLDA 579
Cdd:COG0457 146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
387-643 |
7.27e-36 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 136.29 E-value: 7.27e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 387 QPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAARIAPNHLNVYINLANlIRANESRLEEADQLYRQA 466
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDY--------------EKALELDPDDAEALYNLGL-AYLRLGRYEEALADYEQA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 467 ISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALF 546
Cdd:COG0457 69 LELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 547 NSAIVMQESGEVKLRPEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQT 626
Cdd:COG0457 149 NLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALA 228
|
250
....*....|....*..
gi 1488192473 627 AKELKALPILEELLRYY 643
Cdd:COG0457 229 LLLALRLAALALYQYRA 245
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
467-657 |
2.61e-33 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 128.59 E-value: 2.61e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 467 ISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALF 546
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 547 NSAIVMQESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQT 626
Cdd:COG0457 81 NLGLALQALGRYE---EALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
170 180 190
....*....|....*....|....*....|.
gi 1488192473 627 AKELKALPILEELLRYYPDHIKGLILKGDIL 657
Cdd:COG0457 158 GRYEEALELLEKLEAAALAALLAAALGEAAL 188
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
345-609 |
1.48e-32 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 127.54 E-value: 1.48e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 345 LFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqi 424
Cdd:COG2956 30 LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL---------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 425 ipgkKYAARIAPNHLNVYINLANlIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELD 504
Cdd:COG2956 100 ----EKLLELDPDDAEALRLLAE-IYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 505 RNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPLDANgYFN 584
Cdd:COG2956 175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE---EALELLRKALELDPSDDL-LLA 250
|
250 260
....*....|....*....|....*
gi 1488192473 585 LGMLAMDDKKDNEAEIWMKKAIKLQ 609
Cdd:COG2956 251 LADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
360-641 |
2.69e-32 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 126.77 E-value: 2.69e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 360 WNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAARIAPNHL 439
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIH--------------QKLLERDPDRA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 440 NVYINLANL-IRANesRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVH 518
Cdd:COG2956 77 EALLELAQDyLKAG--LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 519 IELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEA 598
Cdd:COG2956 155 LEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYE---EAIAALERALEQDPDYLPALPRLAELYEKLGDPEEA 231
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1488192473 599 EIWMKKAIKLQADfRSALFNLALLYSQTAKELKALPILEELLR 641
Cdd:COG2956 232 LELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
455-710 |
2.24e-31 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 124.07 E-value: 2.24e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 455 RLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRA 534
Cdd:COG2956 23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 535 LELNPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRS 614
Cdd:COG2956 103 LELDPDDAEALRLLAEIYEQEGDWE---KAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 615 ALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQkKDILGAKKCFERILEMDPSNVQgKHNLCVVYFE 694
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL-GDPEEALELLRKALELDPSDDL-LLALADLLER 257
|
250
....*....|....*.
gi 1488192473 695 EKDLLKAERCLLETLA 710
Cdd:COG2956 258 KEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
477-713 |
3.94e-31 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 123.30 E-value: 3.94e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 477 YISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESG 556
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 557 EVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPIL 636
Cdd:COG2956 91 LLD---RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1488192473 637 EELLRYYPDHIKGLILKGDILMnQKKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAP 713
Cdd:COG2956 168 EKALKLDPDCARALLLLAELYL-EQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
356-584 |
5.98e-26 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 113.93 E-value: 5.98e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 356 NAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAARIA 435
Cdd:COG3914 43 LALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALY--------------RRALALN 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 436 PNHLNVYINLANLIRANEsRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLA 515
Cdd:COG3914 109 PDNAEALFNLGNLLLALG-RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1488192473 516 IVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKLRPEARKRLLSYINEEPLDANGYFN 584
Cdd:COG3914 188 NALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALL 256
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
346-713 |
1.58e-24 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 110.17 E-value: 1.58e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 346 FMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqii 425
Cdd:TIGR02917 488 FEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWL----------- 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 426 pgkKYAARIAPNHLNVYINLANLIRANeSRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDR 505
Cdd:TIGR02917 557 ---EKAAELNPQEIEPALALAQYYLGK-GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP 632
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 506 NNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGevklRPEARKRLLSYI-NEEPLDANGYFN 584
Cdd:TIGR02917 633 DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK----RTESAKKIAKSLqKQHPKAALGFEL 708
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 585 LGMLAMDDKKDNEAEIWMKKAIKLQADfRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQKKDI 664
Cdd:TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD 787
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1488192473 665 LGAKKcFERILEMDPSNVQGKHNLCVVYFEEKDlLKAERCLLETLALAP 713
Cdd:TIGR02917 788 KAIKH-YQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAP 834
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
349-719 |
1.80e-23 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 106.71 E-value: 1.80e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 349 ALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAE----------------- 411
Cdd:TIGR02917 185 VLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEkhadallkkapnsplah 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 412 -----------------ESYMMAKSLMPQIIPGKKYAARI---------APNHLNVY----------INLANLIRANESR 455
Cdd:TIGR02917 265 ylkalvdfqkknyedarETLQDALKSAPEYLPALLLAGASeyqlgnleqAYQYLNQIlkyapnshqaRRLLASIQLRLGR 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 456 LEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRAL 535
Cdd:TIGR02917 345 VDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAA 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 536 ELNPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSA 615
Cdd:TIGR02917 425 QLDPELGRADLLLILSYLRSGQFD---KALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 616 LFNLALLYSQTAKELKALPILEELLRYYPDHIKgLILKGDILMNQKKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEE 695
Cdd:TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLR-AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGK 580
|
410 420
....*....|....*....|....*
gi 1488192473 696 KDLLKAERCLLETLALAP-HEEYIQ 719
Cdd:TIGR02917 581 GQLKKALAILNEAADAAPdSPEAWL 605
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
439-576 |
2.50e-22 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 93.72 E-value: 2.50e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 439 LNVYINLANLIRANEsRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVH 518
Cdd:COG4783 4 AEALYALAQALLLAG-DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1488192473 519 IELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEvklRPEARKRLLSYINEEP 576
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGR---PDEAIAALEKALELDP 137
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
390-541 |
4.44e-22 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 92.95 E-value: 4.44e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 390 DIGAHMNVGRTYKNLNRTKEAEEsymmaksLMPQIIpgkkyaaRIAPNHLNVYINLANlIRANESRLEEADQLYRQAISM 469
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEA-------LLEKAL-------ELDPDNPEAFALLGE-ILLQLGDLDEAIVLLHEALEL 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1488192473 470 RPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKH 541
Cdd:COG4783 68 DPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
349-703 |
1.46e-21 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 100.54 E-value: 1.46e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 349 ALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgk 428
Cdd:TIGR02917 355 ALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADL-------------- 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 429 KYAARIAPNHLNVYINLA-NLIRANESrlEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNN 507
Cdd:TIGR02917 421 ETAAQLDPELGRADLLLIlSYLRSGQF--DKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDF 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 508 ADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGevklRPEARKRLLSY-INEEPLDANGYFNLG 586
Cdd:TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG----NEEEAVAWLEKaAELNPQEIEPALALA 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 587 MLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDIlMNQKKDILG 666
Cdd:TIGR02917 575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADA-YAVMKNYAK 653
|
330 340 350
....*....|....*....|....*....|....*..
gi 1488192473 667 AKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAER 703
Cdd:TIGR02917 654 AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK 690
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
458-590 |
5.11e-21 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 89.68 E-value: 5.11e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 458 EADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALEL 537
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1488192473 538 NPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAM 590
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYA---EAIAAWQKLLALLPADAPARLLEASIAE 130
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
431-540 |
3.16e-20 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 87.37 E-value: 3.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 431 AARIAPNHLNVYINLANlIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADL 510
Cdd:COG4235 9 ALAANPNDAEGWLLLGR-AYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87
|
90 100 110
....*....|....*....|....*....|
gi 1488192473 511 WYNLAIVHIELKEPNEALKNFNRALELNPK 540
Cdd:COG4235 88 LYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
316-568 |
5.32e-20 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 95.06 E-value: 5.32e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 316 LSWICLSMVILTHSLKTFHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHM 395
Cdd:COG3914 71 AAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 396 NVGRTYKNLNRTKEAEESYMMakslmpqiipgkkyAARIAPNHLNVYINLANLIRANeSRLEEADQLYRQAISMRPDFKQ 475
Cdd:COG3914 151 NLGEALRRLGRLEEAIAALRR--------------ALELDPDNAEALNNLGNALQDL-GRLEEAIAAYRRALELDPDNAD 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 476 AYISRGELLLKMNK--PLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSaivmq 553
Cdd:COG3914 216 AHSNLLFALRQACDweVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARAWAQLVAAAAAPELPPPPN----- 290
|
250
....*....|....*
gi 1488192473 554 esgevklRPEARKRL 568
Cdd:COG3914 291 -------PRDPDRKL 298
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
572-728 |
6.08e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 90.07 E-value: 6.08e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 572 INEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLI 651
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1488192473 652 LKGDILMNQKkDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHLNIVRDK 728
Cdd:COG0457 81 NLGLALQALG-RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEK 156
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
431-719 |
1.28e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 93.90 E-value: 1.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 431 AARIAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMnkplkAKEAYLKALELDRNNADL 510
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLAL-----AAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 511 WYNLAIVHIELKEPNEALKNFNRALELNPKHKLAlfnsaivmqesgevklrpearkrllsyineepldangYFNLGMLAM 590
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALALNPDNAEA-------------------------------------LFNLGNLLL 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 591 DDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQkKDILGAKKC 670
Cdd:COG3914 124 ALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDL-GRLEEAIAA 202
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1488192473 671 FERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEEYIQ 719
Cdd:COG3914 203 YRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELS 251
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
353-714 |
5.15e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 92.45 E-value: 5.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 353 NKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEE-------------------- 412
Cdd:TIGR02917 121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARAlidevltadpgnvdalllkg 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 413 SYMMAKSLMPQIIPGKKYAARIAPNHLNVYINLAN-LIRANEsrLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPL 491
Cdd:TIGR02917 201 DLLLSLGNIELALAAYRKAIALRPNNIAVLLALATiLIEAGE--FEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYE 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 492 KAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLAL------------FNSAIV-------- 551
Cdd:TIGR02917 279 DARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARrllasiqlrlgrVDEAIAtlspalgl 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 552 -------MQESGEVKLR---PEARKRLLSYINE-EPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLA 620
Cdd:TIGR02917 359 dpddpaaLSLLGEAYLAlgdFEKAAEYLAKATElDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLI 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 621 LLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNqKKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLK 700
Cdd:TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLG-KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517
|
410
....*....|....
gi 1488192473 701 AERCLLETLALAPH 714
Cdd:TIGR02917 518 AIQRFEKVLTIDPK 531
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
412-587 |
5.76e-19 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 86.51 E-value: 5.76e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 412 ESYMMAKSLMPQIIP--GKKYAARIAPNHLNVYINLANLiRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNK 489
Cdd:COG4785 44 LALALAAAALAAAALaaERIDRALALPDLAQLYYERGVA-YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGD 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 490 PLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGevklRPEARKRLL 569
Cdd:COG4785 123 YDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLD----PEKALALLL 198
|
170 180
....*....|....*....|....
gi 1488192473 570 SYI------NEEPLDANGYFNLGM 587
Cdd:COG4785 199 EDWatayllQGDTEEARELFKLAL 222
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
410-539 |
1.11e-18 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 83.86 E-value: 1.11e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 410 AEESYMMAKSLMPQIIPGKKYAARIAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNK 489
Cdd:COG5010 24 VEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD 103
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1488192473 490 PLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNP 539
Cdd:COG5010 104 KDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
493-722 |
9.15e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 88.13 E-value: 9.15e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 493 AKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEvklRPEARKRLLSYI 572
Cdd:COG3914 2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGE---AAAAAAALLLLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 573 NEEPLDANGYFNLGmlamddkKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLIL 652
Cdd:COG3914 79 ALLELAALLLQALG-------RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLN 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 653 KGDILMNQKkDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHL 722
Cdd:COG3914 152 LGEALRRLG-RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
455-540 |
2.61e-17 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 77.52 E-value: 2.61e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 455 RLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAkEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRA 534
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85
|
....*.
gi 1488192473 535 LELNPK 540
Cdd:COG3063 86 LELDPS 91
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
511-714 |
3.32e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 82.47 E-value: 3.32e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 511 WYNLAIVHIELKEPNEALKNFNRALELNPKHKLAlfnsaivmqesgevklrpearkrllsyineepldangYFNLGMLAM 590
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEA-------------------------------------HLALGNLYR 53
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 591 DDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMnQKKDILGAKKC 670
Cdd:COG2956 54 RRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYE-QEGDWEKAIEV 132
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1488192473 671 FERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPH 714
Cdd:COG2956 133 LERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPD 176
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
442-577 |
8.83e-17 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 78.46 E-value: 8.83e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 442 YINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIEL 521
Cdd:COG5010 22 TLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRS 101
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1488192473 522 KEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPL 577
Cdd:COG5010 102 GDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD---EAKAALQRALGTSPL 154
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
408-722 |
1.95e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 83.98 E-value: 1.95e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 408 KEAEESYMMAKSLMPQIIPGK-----KYAARIAPNHLNVYINLANL------IRANESRLEEADQLYRQAISMRPDFKQA 476
Cdd:TIGR02917 20 QSPEELIEAAKSYLQKNKYKAaiiqlKNALQKDPNDAEARFLLGKIylalgdYAAAEKELRKALSLGYPKNQVLPLLARA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 477 YISRGE----LLLKMNKPLKAKEAYLKALELdrnnadlwynLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVM 552
Cdd:TIGR02917 100 YLLQGKfqqvLDELPGKTLLDDEGAAELLAL----------RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 553 QESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKA 632
Cdd:TIGR02917 170 LAENRFD---EARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 633 LPILEELLRYYPDHIKGLILKGDILMnQKKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALA 712
Cdd:TIGR02917 247 EKHADALLKKAPNSPLAHYLKALVDF-QKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA 325
|
330
....*....|
gi 1488192473 713 PHEEYIQRHL 722
Cdd:TIGR02917 326 PNSHQARRLL 335
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
508-681 |
2.15e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 76.77 E-value: 2.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 508 ADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLAlfnsaivmqesgevklrpearkrllsyineepldangYFNLGM 587
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA-------------------------------------FALLGE 46
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 588 LAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQkKDILGA 667
Cdd:COG4783 47 ILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL-GRPDEA 125
|
170
....*....|....
gi 1488192473 668 KKCFERILEMDPSN 681
Cdd:COG4783 126 IAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
375-509 |
2.18e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 76.20 E-value: 2.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 375 RALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAARIAPNHLNVYINLAN-LIRANE 453
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAY--------------EKALRLDPDNADALLDLAEaLLAAGD 66
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1488192473 454 SrlEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNAD 509
Cdd:COG4235 67 T--EEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
563-681 |
7.55e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 74.66 E-value: 7.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 563 EARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRY 642
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*....
gi 1488192473 643 YPDHIKGLILKGDILMnQKKDILGAKKCFERILEMDPSN 681
Cdd:COG4235 81 DPDNPEALYLLGLAAF-QQGDYAEAIAAWQKLLALLPAD 118
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
483-576 |
9.10e-16 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 73.28 E-value: 9.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 483 LLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKnFNRALELNPKHKLALFNSAIVMQESGEVKlrp 562
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD--- 76
|
90
....*....|....
gi 1488192473 563 EARKRLLSYINEEP 576
Cdd:COG3063 77 EALAYLERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
492-656 |
1.01e-15 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 74.27 E-value: 1.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 492 KAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKhklalfnsaivmqesgevklrpearkrllsy 571
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD------------------------------- 49
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 572 ineeplDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLI 651
Cdd:COG4235 50 ------NADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
....*
gi 1488192473 652 LKGDI 656
Cdd:COG4235 124 LEASI 128
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
338-473 |
1.81e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.07 E-value: 1.81e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 338 DWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmma 417
Cdd:COG4783 19 DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALL--- 95
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1488192473 418 kslmpqiipgkKYAARIAPNHLNVYINLANLIRANEsRLEEADQLYRQAISMRPDF 473
Cdd:COG4783 96 -----------EKALKLDPEHPEAYLRLARAYRALG-RPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
578-715 |
2.44e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 73.69 E-value: 2.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 578 DANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDIL 657
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1488192473 658 MNQkKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHE 715
Cdd:COG4783 83 LKA-GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
354-710 |
5.29e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 79.36 E-value: 5.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 354 KNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAAR 433
Cdd:TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF--------------EKVLT 527
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 434 IAPNHLNVYINLANL--IRANESR----LEEADQLYRQAISMRPDFKQAYISRGEL------------------------ 483
Cdd:TIGR02917 528 IDPKNLRAILALAGLylRTGNEEEavawLEKAAELNPQEIEPALALAQYYLGKGQLkkalailneaadaapdspeawlml 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 484 --LLKMNKPL-KAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLAL------------FNS 548
Cdd:TIGR02917 608 grAQLAAGDLnKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQiglaqlllaakrTES 687
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 549 AI----VMQES-----------GEVKLR-------------------------------------PEARKRLLSYINEEP 576
Cdd:TIGR02917 688 AKkiakSLQKQhpkaalgfeleGDLYLRqkdypaaiqayrkalkrapssqnaiklhrallasgntAEAVKTLEAWLKTHP 767
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 577 LDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTaKELKALPILEELLRYYPDHIKGLILKGDI 656
Cdd:TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLAPNIPAILDTLGWL 846
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1488192473 657 LMnQKKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAeRCLLETLA 710
Cdd:TIGR02917 847 LV-EKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA-RKELDKLL 898
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
400-677 |
1.34e-14 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 77.72 E-value: 1.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 400 TYKNLNRTKEAEESYMMA------KSLMPQIIPGKKYAARIAPN---------HLNVYINLANLIRANESRLEEADQLYR 464
Cdd:TIGR00990 276 RPAGLEDSNELDEETGNGqlqlglKSPESKADESYEEAARAFEKaldlgklgeKEAIALNLRGTFKCLKGKHLEALADLS 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 465 QAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLA 544
Cdd:TIGR00990 356 KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 545 LFNSAIVMQESGEVKLRPEARKRLLSYINEEPlDANGYFnlGMLAMDDKKDNEAEIWMKKAIKLQADFR------SALFN 618
Cdd:TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNFPEAP-DVYNYY--GELLLDQNKFDEAIEKFDTAIELEKETKpmymnvLPLIN 512
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 619 LALLYSQTAKEL-KALPILEELLRYYPDHIKGLILKGDILMnQKKDILGAKKCFERILEM 677
Cdd:TIGR00990 513 KALALFQWKQDFiEAENLCEKALIIDPECDIAVATMAQLLL-QQGDVDEALKLFERAAEL 571
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
334-550 |
1.68e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 70.71 E-value: 1.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 334 HRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFL------QATHVQPDDIGAHMNVGRTYKNLNRT 407
Cdd:COG4785 10 LALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAAlaaeriDRALALPDLAQLYYERGVAYDSLGDY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 408 KEAEESYMMAKSLMPqiipgkKYAAriapnhlnVYINLAnLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKM 487
Cdd:COG4785 90 DLAIADFDQALELDP------DLAE--------AYNNRG-LAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1488192473 488 NKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKePNEALKNFNRA------LELNPKHKLALFNSAI 550
Cdd:COG4785 155 GRYELAIADLEKALELDPNDPERALWLYLAERKLD-PEKALALLLEDwataylLQGDTEEARELFKLAL 222
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
338-504 |
3.79e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 70.53 E-value: 3.79e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 338 DWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmma 417
Cdd:COG2956 125 DWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAAL--- 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 418 kslmpqiipgkKYAARIAPNHLNVYINLANLIRAnESRLEEADQLYRQAISMRPDfKQAYISRGELLLKMNKPLKAKEAY 497
Cdd:COG2956 202 -----------ERALEQDPDYLPALPRLAELYEK-LGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALL 268
|
....*..
gi 1488192473 498 LKALELD 504
Cdd:COG2956 269 ERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
579-722 |
7.40e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 69.76 E-value: 7.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 579 ANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILM 658
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1488192473 659 NQKK-DilGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHL 722
Cdd:COG2956 88 KAGLlD--RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL 150
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
349-483 |
7.92e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 66.18 E-value: 7.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 349 ALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgk 428
Cdd:COG4235 9 ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELL-------------- 74
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1488192473 429 KYAARIAPNHLNVYINLAnLIRANESRLEEADQLYRQAISMRPDFKQAYISRGEL 483
Cdd:COG4235 75 ERALALDPDNPEALYLLG-LAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
475-656 |
1.16e-12 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 68.52 E-value: 1.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 475 QAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQE 554
Cdd:TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 555 SGEVKlrpEARKRLLSYINEE--PLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKA 632
Cdd:TIGR02521 112 QGKYE---QAMQQFEQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188
|
170 180
....*....|....*....|....
gi 1488192473 633 LPILEELLRYYPDHIKGLILKGDI 656
Cdd:TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRI 212
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
332-422 |
1.11e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 63.83 E-value: 1.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 332 TFHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAE 411
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAK 142
|
90
....*....|.
gi 1488192473 412 ESYMMAKSLMP 422
Cdd:COG5010 143 AALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
597-723 |
3.35e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 61.56 E-value: 3.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 597 EAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQKkDILGAKKCFERILE 676
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG-DTEEAEELLERALA 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1488192473 677 MDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEE---YIQRHLN 723
Cdd:COG4235 80 LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAparLLEASIA 129
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
366-471 |
4.64e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.90 E-value: 4.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 366 ALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAARIAPNHLNVYINL 445
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYY--------------EKALALSPDNPNAYSNL 128
|
90 100
....*....|....*....|....*.
gi 1488192473 446 AnLIRANESRLEEADQLYRQAISMRP 471
Cdd:COG5010 129 A-ALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
455-609 |
7.66e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.13 E-value: 7.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 455 RLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRA 534
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1488192473 535 LELNPKHKLALFNSAIVMQESGEVKlrpEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQ 609
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKD---EAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
349-498 |
7.91e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 63.10 E-value: 7.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 349 ALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYMmakslmpQIIPGK 428
Cdd:COG0457 102 ALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLE-------KLEAAA 174
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 429 KYAARIAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYL 498
Cdd:COG0457 175 LAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
614-722 |
8.44e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.59 E-value: 8.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 614 SALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQKkDILGAKKCFERILEMDPSNVQGKHNLCVVYF 693
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG-DLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100
....*....|....*....|....*....
gi 1488192473 694 EEKDLLKAERCLLETLALAPHEEYIQRHL 722
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRL 112
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
366-472 |
1.04e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.03 E-value: 1.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 366 ALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEEsYmmakslmpqiipgkKYAARIAPNHLNVYINL 445
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-L--------------EKALKLDPNNAEALLNL 65
|
90 100
....*....|....*....|....*..
gi 1488192473 446 AnLIRANESRLEEADQLYRQAISMRPD 472
Cdd:COG3063 66 A-ELLLELGDYDEALAYLERALELDPS 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
353-536 |
6.72e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 59.93 E-value: 6.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 353 NKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAA 432
Cdd:COG4785 69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDF--------------DRAL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 433 RIAPNHLNVYINLAnLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNkPLKAKEAYLKAleldrnnadlWy 512
Cdd:COG4785 135 ELDPDYAYAYLNRG-IALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLD-PEKALALLLED----------W- 201
|
170 180
....*....|....*....|....
gi 1488192473 513 nlAIVHIELKEPNEALKNFNRALE 536
Cdd:COG4785 202 --ATAYLLQGDTEEARELFKLALA 223
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
442-694 |
1.06e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 59.54 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 442 YINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDR-----NNADLWYNLAI 516
Cdd:COG4785 2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRalalpDLAQLYYERGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 517 VHIELKEPNEALKNFNRALELNPKhklalfnsaivmqesgevklRPEArkrllsyineepldangYFNLGMLAMDDKKDN 596
Cdd:COG4785 82 AYDSLGDYDLAIADFDQALELDPD--------------------LAEA-----------------YNNRGLAYLLLGDYD 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 597 EAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGdiLMNQKKDILGAKKCFERILE 676
Cdd:COG4785 125 AALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLY--LAERKLDPEKALALLLEDWA 202
|
250
....*....|....*...
gi 1488192473 677 MDPSNvQGKHNLCVVYFE 694
Cdd:COG4785 203 TAYLL-QGDTEEARELFK 219
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
338-502 |
4.24e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 57.62 E-value: 4.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 338 DWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYMMA 417
Cdd:COG4785 88 DYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKA 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 418 KSLMPQiipgkkyaarIAPNHLNVYINLANLiranesRLEEADQLYRQAISMrpdfkqAYISRGElllkmnkPLKAKEAY 497
Cdd:COG4785 168 LELDPN----------DPERALWLYLAERKL------DPEKALALLLEDWAT------AYLLQGD-------TEEARELF 218
|
....*
gi 1488192473 498 LKALE 502
Cdd:COG4785 219 KLALA 223
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
517-645 |
7.69e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.64 E-value: 7.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 517 VHIELKEPNEALKNFNRALELNPKhklalfnsaivmqesgevklrpearkrllsyineeplDANGYFNLGMLAMDDKKDN 596
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD-------------------------------------NADALNNLGLLLLEQGRYD 43
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1488192473 597 EAEIWmKKAIKLQADFRSALFNLALLYSQTAKELKALPILEELLRYYPD 645
Cdd:COG3063 44 EAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
588-683 |
1.51e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.87 E-value: 1.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 588 LAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPiLEELLRYYPDHIKGLILKGDILMNQkKDILGA 667
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL-GDYDEA 78
|
90
....*....|....*.
gi 1488192473 668 KKCFERILEMDPSNVQ 683
Cdd:COG3063 79 LAYLERALELDPSALR 94
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
484-576 |
3.14e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 52.30 E-value: 3.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 484 LLKMNKPLKAKEAYLKALELDRNN---ADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKL---ALFNSAIVMQESGE 557
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82
|
90
....*....|....*....
gi 1488192473 558 vklRPEARKRLLSYINEEP 576
Cdd:COG1729 83 ---YDKARATLEELIKKYP 98
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
608-722 |
4.39e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 55.51 E-value: 4.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 608 LQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMnQKKDILGAKKCFERILEMDPSNVQGKHN 687
Cdd:COG2956 3 LPVAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYR-RRGEYDRAIRIHQKLLERDPDRAEALLE 81
|
90 100 110
....*....|....*....|....*....|....*
gi 1488192473 688 LCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHL 722
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLL 116
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
349-435 |
7.03e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.93 E-value: 7.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 349 ALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYMMAKSLMPQIIPGK 428
Cdd:COG4235 43 ALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
....*..
gi 1488192473 429 KYAARIA 435
Cdd:COG4235 123 LLEASIA 129
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
508-541 |
7.60e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 48.96 E-value: 7.60e-08
10 20 30
....*....|....*....|....*....|....
gi 1488192473 508 ADLWYNLAIVHIELKEPNEALKNFNRALELNPKH 541
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
560-713 |
7.73e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 52.66 E-value: 7.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 560 LRPEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALPILEEL 639
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1488192473 640 LRYYPDHIKGLILKGDILMnQKKDILGAKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAP 713
Cdd:COG5010 81 LQLDPNNPELYYNLALLYS-RSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
452-544 |
9.60e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.15 E-value: 9.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 452 NESRLEEADQLYRQAISMRPDFK---QAYISRGELLLKMNKPLKAKEAYLKALELDRNN---ADLWYNLAIVHIELKEPN 525
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDYD 84
|
90
....*....|....*....
gi 1488192473 526 EALKNFNRALELNPKHKLA 544
Cdd:COG1729 85 KARATLEELIKKYPDSEAA 103
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
622-713 |
1.04e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.55 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 622 LYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQKkDILGAKKcFERILEMDPSNVQGKHNLCVVYFEEKDLLKA 701
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG-RYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|..
gi 1488192473 702 ERCLLETLALAP 713
Cdd:COG3063 79 LAYLERALELDP 90
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
475-676 |
1.55e-07 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 53.79 E-value: 1.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 475 QAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPkhklalfnsaivmqE 554
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP--------------D 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 555 SGEVKlrpearkrllsYIN----EEPLDANGYFNLG---MLAMDDKKDNEAEIWMKKAIKLQADFRSALFNLALLY---- 623
Cdd:cd24142 67 GGYEK-----------YLYlgqlSGGEEALQYYEKGieiLEEELQALQAASAEAEEEAEELKRKLSSALCALAEIYmtdl 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1488192473 624 ------SQTAKELkalpiLEELLRYYPDHIKGLILKGDILMNQkKDILGAKKCFERILE 676
Cdd:cd24142 136 cdepdaEQRCEEL-----ITKALELDPTNPEALQTLASLRISQ-QRPDEAKEALRRSLE 188
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
333-422 |
1.58e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.78 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 333 FHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKyFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEE 412
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 1488192473 413 SYMMAKSLMP 422
Cdd:COG3063 81 YLERALELDP 90
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
608-728 |
2.60e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 51.11 E-value: 2.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 608 LQADFRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQKKDILGAKKCFERILEMDPSNVQGKHN 687
Cdd:COG5010 14 LLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYN 93
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1488192473 688 LCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHLNIVRDK 728
Cdd:COG5010 94 LALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLS 134
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
492-608 |
2.90e-07 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 51.21 E-value: 2.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 492 KAKEAYLKALELDRNNAD---LWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEvKLRPEARKRl 568
Cdd:PRK02603 53 EALENYEEALKLEEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE-KAEEAGDQD- 130
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1488192473 569 lsyineeplDANGYFnlgmlamddkkDNEAEIWmKKAIKL 608
Cdd:PRK02603 131 ---------EAEALF-----------DKAAEYW-KQAIRL 149
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
508-541 |
7.60e-07 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 45.90 E-value: 7.60e-07
10 20 30
....*....|....*....|....*....|....
gi 1488192473 508 ADLWYNLAIVHIELKEPNEALKNFNRALELNPKH 541
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
508-540 |
1.55e-06 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 45.21 E-value: 1.55e-06
10 20 30
....*....|....*....|....*....|...
gi 1488192473 508 ADLWYNLAIVHIELKEPNEALKNFNRALELNPK 540
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
513-729 |
5.06e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 48.37 E-value: 5.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 513 NLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKLRPEARKRLLSYINEE---PLDANGYFNLGMLA 589
Cdd:COG4785 4 LALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAlalPDLAQLYYERGVAY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 590 MDDKKDNEAEIWMKKAIKLQADFRSALFNLALLYSQTAKELKALpileellryypdhikglilkgdilmnqkKDilgakk 669
Cdd:COG4785 84 DSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAAL----------------------------ED------ 129
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 670 cFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHLNIVRDKI 729
Cdd:COG4785 130 -FDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKL 188
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
476-540 |
5.50e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.07 E-value: 5.50e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1488192473 476 AYISRGELLLKMNKPLKAKEAYLKALELDR--------NNADLWYNLAIVHIELKEPNEALKNFNRALELNPK 540
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARrllgpdhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
496-529 |
7.33e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 43.30 E-value: 7.33e-06
10 20 30
....*....|....*....|....*....|....
gi 1488192473 496 AYLKALELDRNNADLWYNLAIVHIELKEPNEALK 529
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
372-641 |
1.33e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 47.98 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 372 NFERALKYFLQATHVQPD-DIGAHMNVGRTYKNLNRTKEAEESymmAKSLmPQIIPGKKYAARIApnhLNVYINLAN--- 447
Cdd:COG3071 65 DYERRDEYLAQALELAPEaELAVLLTRAELLLDQGQAEQALAT---LEAL-RAGAPRHPQVLRLL---LQAYRQLGDwee 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 448 -------LIRANESRLEEADQLYRQAISmrpdfkqayisrgELLLKMNKPLKAKEAYLKAL-ELDRNNADLWYNLAIVHI 519
Cdd:COG3071 138 llellpaLRKHKALSAEEAQALERRAYL-------------GLLRQAARDAEALKALWKALpRAERRDPELAAAYARALI 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 520 ELKEPNEALKNFNRALELNPKHKLALfnsaiVMQESgEVKLRPEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAE 599
Cdd:COG3071 205 ALGDHDEAERLLREALKRQWDPRLVR-----LYGRL-QGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAR 278
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1488192473 600 IWMKKAIKLQADfRSALFNLALLYSQTAKELKALPILEELLR 641
Cdd:COG3071 279 EYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALA 319
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
343-510 |
1.72e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 48.44 E-value: 1.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 343 YTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTYKNLNRTKEAEESYMMAKSLMP 422
Cdd:TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 423 QI--IPG----------------KKYAARIA------PNHLNV--YINLANLIRANESRLEEADQLYRQAISMRPDFKQA 476
Cdd:TIGR00990 465 EApdVYNyygellldqnkfdeaiEKFDTAIEleketkPMYMNVlpLINKALALFQWKQDFIEAENLCEKALIIDPECDIA 544
|
170 180 190
....*....|....*....|....*....|....
gi 1488192473 477 YISRGELLLKMNKPLKAKEAYLKALELDRNNADL 510
Cdd:TIGR00990 545 VATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
562-646 |
3.34e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.83 E-value: 3.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 562 PEARKRLLSYINEEP---LDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQAD---FRSALFNLALLYSQTAKELKALPI 635
Cdd:COG1729 10 DEAIAAFKAFLKRYPnspLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDKARAT 89
|
90
....*....|.
gi 1488192473 636 LEELLRYYPDH 646
Cdd:COG1729 90 LEELIKKYPDS 100
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
475-507 |
1.01e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.10 E-value: 1.01e-04
10 20 30
....*....|....*....|....*....|...
gi 1488192473 475 QAYISRGELLLKMNKPLKAKEAYLKALELDRNN 507
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
475-518 |
1.47e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 39.76 E-value: 1.47e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 1488192473 475 QAYISRGELLlkmnkplKAKEAYLKALELDRNNADLWYNLAIVH 518
Cdd:pfam13414 2 DAYYEQGKYE-------EAIEAYKKALKLDPDNPEAYYNLGLAY 38
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
475-507 |
1.52e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.35 E-value: 1.52e-04
10 20 30
....*....|....*....|....*....|...
gi 1488192473 475 QAYISRGELLLKMNKPLKAKEAYLKALELDRNN 507
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
493-544 |
1.77e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 40.26 E-value: 1.77e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1488192473 493 AKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLA 544
Cdd:pfam14559 7 ALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRY 58
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
492-539 |
2.87e-04 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 44.01 E-value: 2.87e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 492 KAKEA------------YLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNP 539
Cdd:PLN03088 8 KAKEAfvdddfalavdlYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP 67
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
357-390 |
3.30e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.56 E-value: 3.30e-04
10 20 30
....*....|....*....|....*....|....
gi 1488192473 357 AKLWNNVGHALENEKNFERALKYFLQATHVQPDD 390
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
493-608 |
4.55e-04 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 41.92 E-value: 4.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 493 AKEAYLKALELDRNNAD---LWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGEVKLRpearkrll 569
Cdd:CHL00033 54 ALQNYYEAMRLEIDPYDrsyILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIE-------- 125
|
90 100 110
....*....|....*....|....*....|....*....
gi 1488192473 570 syiNEEPLDANGYFnlgmlamddkkDNEAEIWmKKAIKL 608
Cdd:CHL00033 126 ---QGDSEIAEAWF-----------DQAAEYW-KQAIAL 149
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
480-541 |
4.83e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 39.24 E-value: 4.83e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1488192473 480 RGELLLKMNKPLKAKEAYLKALELDRN---NADLWYNLAIVHIELKEPNEALKNFNRALELNPKH 541
Cdd:pfam13432 3 LARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
357-390 |
7.18e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.81 E-value: 7.18e-04
10 20 30
....*....|....*....|....*....|....
gi 1488192473 357 AKLWNNVGHALENEKNFERALKYFLQATHVQPDD 390
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
356-414 |
7.21e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.97 E-value: 7.21e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1488192473 356 NAKLWnnVGHALENEKNFERALKYFLQATHVQPDDI---GAHMNVGRTYKNLNRTKEAEESY 414
Cdd:COG1729 31 DALYW--LGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDKARATL 90
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
587-680 |
8.02e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.97 E-value: 8.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 587 MLAMDDKKDNEAEIWMKKAIKLQADFR---SALFNLALLYSQTAKELKALPILEELLRYYPDHIK---GLILKGDILMNQ 660
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLEL 80
|
90 100
....*....|....*....|
gi 1488192473 661 kKDILGAKKCFERILEMDPS 680
Cdd:COG1729 81 -GDYDKARATLEELIKKYPD 99
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
508-540 |
9.70e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 37.38 E-value: 9.70e-04
10 20 30
....*....|....*....|....*....|...
gi 1488192473 508 ADLWYNLAIVHIELKEPNEALKNFNRALELNPK 540
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
481-542 |
1.23e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 41.41 E-value: 1.23e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1488192473 481 GELLLKMNKPLKAKEAYLKALE-LDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKHK 542
Cdd:COG4700 96 ADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFK 158
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
453-515 |
1.75e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.56 E-value: 1.75e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1488192473 453 ESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLA 515
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLA 63
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
406-576 |
2.15e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 41.33 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 406 RTKEAEESYMMAKSLmpQIIPGKKYAARIApnHLnvYINLANLIRANeSRLEEADQLYRQAISMRPDFKQAYISRGELLL 485
Cdd:PRK11788 153 QEKDWQKAIDVAERL--EKLGGDSLRVEIA--HF--YCELAQQALAR-GDLDAARALLKKALAADPQCVRASILLGDLAL 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 486 KMNKPLKAKEAYLKALELDRN----NADLWYNlaiVHIELKEPNEALKNFNRALELNPKHKLALFNSAIVMQESGevklR 561
Cdd:PRK11788 226 AQGDYAAAIEALERVEEQDPEylseVLPKLME---CYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEG----P 298
|
170
....*....|....*
gi 1488192473 562 PEARKRLLSYINEEP 576
Cdd:PRK11788 299 EAAQALLREQLRRHP 313
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
366-483 |
2.71e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.43 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 366 ALENEKNFERALKYFLQATHVQPDDI---GAHMNVGRTYKNLNRTKEAEESYmmakslmpqiipgkKYAARIAPNH---L 439
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAF--------------EKLLKRYPDSpkaP 67
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1488192473 440 NVYINLAnLIRANESRLEEADQLYRQAISMRPDFKQAYISRGEL 483
Cdd:COG1729 68 DALLKLG-LSYLELGDYDKARATLEELIKKYPDSEAAKEARARL 110
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
508-568 |
2.98e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 37.37 E-value: 2.98e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1488192473 508 ADLWYNLAIVHIELKEPNEALKNFNRALEL-----NPKHKL---ALFNSAIVMQESGEvklRPEARKRL 568
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllGPDHPLtatTLLNLGRLYLELGR---YEEALELL 68
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
475-506 |
4.77e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 35.45 E-value: 4.77e-03
10 20 30
....*....|....*....|....*....|..
gi 1488192473 475 QAYISRGELLLKMNKPLKAKEAYLKALELDRN 506
Cdd:pfam13181 2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
357-389 |
6.88e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.81 E-value: 6.88e-03
10 20 30
....*....|....*....|....*....|...
gi 1488192473 357 AKLWNNVGHALENEKNFERALKYFLQATHVQPD 389
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
372-537 |
7.31e-03 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 39.60 E-value: 7.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 372 NFERALKYFLQA-THVQPDD----IGAHMNVGRTYKNLNRTKEAEESYMMAKSLmpqiipgkkyaARiAPNHLNV----Y 442
Cdd:pfam17874 16 DAERALELAEQAlALLPEDDllarGLATFVLGEAYLCLGDLDAALQAMREAEAL-----------AR-RADSPHVtlwaL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488192473 443 INLANLIRAnESRLEEADQLYRQAISMRPDFKQA--------YISRGELLLKMNKPLKAKEAYLKALELDRnnadLWYNL 514
Cdd:pfam17874 84 LQQGEILRA-QGRLHQALETYQQALQLARDHGLQhlplhgflLVGLADLLYEWNDLEEAEQHAQQGIQLGR----QWEPD 158
|
170 180 190
....*....|....*....|....*....|..
gi 1488192473 515 AIVHIELK---------EPNEALKNFNRALEL 537
Cdd:pfam17874 159 AAVDAYVLlarialaqgELEEALTLLRRAELL 190
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
476-506 |
7.82e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.81 E-value: 7.82e-03
10 20 30
....*....|....*....|....*....|.
gi 1488192473 476 AYISRGELLLKMNKPLKAKEAYLKALELDRN 506
Cdd:pfam07719 3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_14 |
pfam13428 |
Tetratricopeptide repeat; |
508-549 |
7.94e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463874 [Multi-domain] Cd Length: 44 Bit Score: 35.09 E-value: 7.94e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1488192473 508 ADLWYNLAIVHIELKEPNEALKNFNRALELNPKHKLALFNSA 549
Cdd:pfam13428 1 PEALLALARALLALGDPDEALALLERALALDPDDPEAWLALA 42
|
|
| |
