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Conserved domains on  [gi|1431124523|ref|NP_001351817|]
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NADPH--cytochrome P450 reductase-like [Solenopsis invicta]

Protein Classification

NADPH--cytochrome P450 reductase( domain architecture ID 10446938)

NADPH--cytochrome P450 reductase, also called NADPH--hemoprotein reductase, is required for electron transfer from NADP to cytochrome P450 in microsomes

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CYPOR cd06204
NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase ...
279-676 0e+00

NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


:

Pssm-ID: 99801 [Multi-domain]  Cd Length: 416  Bit Score: 648.16  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 279 DAKNPFLAPVKMNRELHGPaSDRSCMHIEFDIDGSKMRYETGDHLAVYPVNNPELVNKIGEQCGVN-LDTVFTLTNTDEE 357
Cdd:cd06204     1 DAKNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDdRDTVISLKSLDEP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 358 STKKHPFPCPCSYRTALTHYLDITSNPRTHVLKELAEYATDPAEKEKLKLMASttvEGKAAYQQWIIQDNRNIVHILEDI 437
Cdd:cd06204    80 ASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS---EGKDEYAKWIVEPHRNLLEVLQDF 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 438 HSLK---PPLDHLCEILPRLQCRYYSISSSPKIYPNSVHITAVVVEYKTPTGRTNKGVTTTWLK--------EKHPTDPP 506
Cdd:cd06204   157 PSAKptpPPFDFLIELLPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLalkpalngEKPPTPYY 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 507 CL----------VPIFVRKSQFRLPTRPSTPIVMIGPGTGLAPFRGFIQERDFARKEGKEVGDTILYFGCRKSQEDFIYR 576
Cdd:cd06204   237 LSgprkkgggskVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYK 316
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 577 DELEEYVKSG-LLTLHTAFSREQAQKVYVTHLLENNKEELWRVIGEQnGHVYVCGDAKNMARDVHNILLKMVKERGNMSE 655
Cdd:cd06204   317 DELEEYAKLGgLLELVTAFSREQPKKVYVQHRLAEHAEQVWELINEG-AYIYVCGDAKNMARDVEKTLLEILAEQGGMTE 395
                         410       420
                  ....*....|....*....|.
gi 1431124523 656 VDAANYIKKMESQKRYSSDVW 676
Cdd:cd06204   396 TEAEEYVKKLKTRGRYQEDVW 416
Flavodoxin_1 pfam00258
Flavodoxin;
84-221 3.35e-38

Flavodoxin;


:

Pssm-ID: 425562 [Multi-domain]  Cd Length: 142  Bit Score: 138.27  E-value: 3.35e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523  84 VFYGSQTGTAEEFAGRLAKEGIRYKMKGMVADPEECDMEelvrLKTIPNS-LAVFCLATYGEGDPTDNAMEFIDWL---- 158
Cdd:pfam00258   1 IFYGSQTGNTEKLAEAIAEGLGEAGFEVDVVDLDDVDET----LSEIEEEdLLLVVVSTWGEGEPPDNAKPFVDWLllfg 76
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1431124523 159 KNGDGDLTGLNYAVFGLGNKTYEHYNEIGVYVDNRLEQLGATRVVELGLGDDD---ANIEDDFITW 221
Cdd:pfam00258  77 TLEDGDLSGLKYAVFGLGDSGYEGFCGAAKKLDEKLSELGASRVGPLGEGDEDpqeDGLEEAFEAW 142
 
Name Accession Description Interval E-value
CYPOR cd06204
NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase ...
279-676 0e+00

NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99801 [Multi-domain]  Cd Length: 416  Bit Score: 648.16  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 279 DAKNPFLAPVKMNRELHGPaSDRSCMHIEFDIDGSKMRYETGDHLAVYPVNNPELVNKIGEQCGVN-LDTVFTLTNTDEE 357
Cdd:cd06204     1 DAKNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDdRDTVISLKSLDEP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 358 STKKHPFPCPCSYRTALTHYLDITSNPRTHVLKELAEYATDPAEKEKLKLMASttvEGKAAYQQWIIQDNRNIVHILEDI 437
Cdd:cd06204    80 ASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS---EGKDEYAKWIVEPHRNLLEVLQDF 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 438 HSLK---PPLDHLCEILPRLQCRYYSISSSPKIYPNSVHITAVVVEYKTPTGRTNKGVTTTWLK--------EKHPTDPP 506
Cdd:cd06204   157 PSAKptpPPFDFLIELLPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLalkpalngEKPPTPYY 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 507 CL----------VPIFVRKSQFRLPTRPSTPIVMIGPGTGLAPFRGFIQERDFARKEGKEVGDTILYFGCRKSQEDFIYR 576
Cdd:cd06204   237 LSgprkkgggskVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYK 316
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 577 DELEEYVKSG-LLTLHTAFSREQAQKVYVTHLLENNKEELWRVIGEQnGHVYVCGDAKNMARDVHNILLKMVKERGNMSE 655
Cdd:cd06204   317 DELEEYAKLGgLLELVTAFSREQPKKVYVQHRLAEHAEQVWELINEG-AYIYVCGDAKNMARDVEKTLLEILAEQGGMTE 395
                         410       420
                  ....*....|....*....|.
gi 1431124523 656 VDAANYIKKMESQKRYSSDVW 676
Cdd:cd06204   396 TEAEEYVKKLKTRGRYQEDVW 416
CysJ COG0369
Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases ...
78-676 0e+00

Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases [Nucleotide transport and metabolism, Inorganic ion transport and metabolism]; Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases is part of the Pathway/BioSystem: Cysteine biosynthesis


Pssm-ID: 440138 [Multi-domain]  Cd Length: 561  Bit Score: 561.31  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523  78 SGRSLVVFYGSQTGTAEEFAGRLAKEGiryKMKGMvaDPEECDMEElVRLKTIPN-SLAVFCLATYGEGDPTDNAMEFID 156
Cdd:COG0369    25 AGTPLTILYGSQTGNAEGLAEQLAERA---KAAGL--AVTLASLDD-YKPKDLAKeGLLLIVTSTYGEGEPPDNARAFYE 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 157 WLKN-GDGDLTGLNYAVFGLGNKTYEHYNEIGVYVDNRLEQLGATRVVELGlgDDDANIEDDFITWKDKFWPAVCEFFGI 235
Cdd:COG0369    99 FLHSkKAPKLDGLRYAVLGLGDSSYETFCQTGKDFDARLEELGATRLLPRV--DCDVDYEEAAEAWLAAVLAALAEALGA 176
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 236 EGAGEDVSirqykltehvdlpndriytgeiarlhsfTNQRPPYDAKNPFLAPVKMNRELHGPASDRSCMHIEFDIDGSKM 315
Cdd:COG0369   177 AAAAAAAA----------------------------AAAAPAYSRKNPFPATVLENRELTGRGSAKETRHIEIDLPGSGL 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 316 RYETGDHLAVYPVNNPELVNKIGEQCGVNLDTVFTLTNTdeestkkhpfpcPCSYRTALTHYLDITSNPRThVLKELAEY 395
Cdd:COG0369   229 SYEPGDALGVWPENDPALVDELLARLGLDGDEPVTLDGE------------PLSLREALTEHLELTRLTPP-LLEKYAEL 295
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 396 ATDPAekeklkLMASTTVEGKAAYQQWIiqDNRNIVHILEDIHSLKPPLDHLCEILPRLQCRYYSISSSPKIYPNSVHIT 475
Cdd:COG0369   296 TGNAE------LAALLADEDKAALREYL--AGRQLLDLLREFPAAELSAEELLELLRPLTPRLYSISSSPKAHPDEVHLT 367
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 476 AVVVEYKTpTGRTNKGVTTTWLKEKHPTDPpclVPIFVRKSQ-FRLPTRPSTPIVMIGPGTGLAPFRGFIQERDFARKEG 554
Cdd:COG0369   368 VGVVRYEA-SGRERKGVASTYLADLEEGDT---VPVFVEPNPnFRLPADPDTPIIMIGPGTGIAPFRAFLQEREARGASG 443
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 555 KevgdTILYFGCRKSQEDFIYRDELEEYVKSGLLT-LHTAFSREQAQKVYVTHLLENNKEELWRVIgEQNGHVYVCGDAK 633
Cdd:COG0369   444 K----NWLFFGDRHFTTDFLYQTELQAWLKDGVLTrLDLAFSRDQAEKIYVQHRLLEQGAELWAWL-EEGAHVYVCGDAS 518
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|...
gi 1431124523 634 NMARDVHNILLKMVKERGNMSEVDAANYIKKMESQKRYSSDVW 676
Cdd:COG0369   519 RMAKDVDAALLDIIAEHGGLSEEEAEEYLAELRAEKRYQRDVY 561
FAD_binding_1 pfam00667
FAD binding domain; This domain is found in sulfite reductase, NADPH cytochrome P450 reductase, ...
277-496 1.69e-92

FAD binding domain; This domain is found in sulfite reductase, NADPH cytochrome P450 reductase, Nitric oxide synthase and methionine synthase reductase.


Pssm-ID: 395540 [Multi-domain]  Cd Length: 219  Bit Score: 285.77  E-value: 1.69e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 277 PYDAKNPFLAPVKMNRELHGPASDRSCMHIEFDIDGSKMRYETGDHLAVYPVNNPELVNKIGEQCGVNL--DTVFTLTNT 354
Cdd:pfam00667   1 PFDAKKPFTAPVLSNRELTSPSSDRNCIHVELDISGSGLTYQTGDHLGVYPPNNEELVEELLERLGLDPkpDTVVLLKTL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 355 DEesTKKHPFPCPCSYRTALTHYLDITSNPRTHVLKELAEYATDPAEKEKLKLMASTtvEGKAAYQQWIIQDNRNIVHIL 434
Cdd:pfam00667  81 DE--RVKPPRLPPTTYRQALKYYLDITGPPSKQLLRLLAQFAPEEEEKQRLEFLSSD--AGAREYKRWKLNHAPTLLEVL 156
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1431124523 435 EDIHSLKPPLDHLCEILPRLQCRYYSISSSPKIYPNSVHITAVVVEYKT-PTGRTNKGVTTTW 496
Cdd:pfam00667 157 EEFPSVKLPADFLLTQLPQLQPRYYSISSSSKVHPNEVHLTVVVVEYETdGEGRIHYGVCSNW 219
PRK06214 PRK06214
sulfite reductase subunit alpha;
276-676 4.50e-91

sulfite reductase subunit alpha;


Pssm-ID: 235745 [Multi-domain]  Cd Length: 530  Bit Score: 293.13  E-value: 4.50e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 276 PPYDAKNPFLAPVKMNRELHGPASDRSCMHIEFDIDGSKMRYETGDHLAVYPVNNPELVNKIGEQCGVNLDTVFtltntd 355
Cdd:PRK06214  161 LGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI------ 234
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 356 EESTkkhpfpcpcsYRTALTHylDITSNPRTHVLKELAEYATDPAEKEKLKLMAS-TTVEGKAAYQqwiiqdnrNIVHIL 434
Cdd:PRK06214  235 GGKT----------LREALLE--DVSLGPAPDGLFELLSYITGGAARKKARALAAgEDPDGDAATL--------DVLAAL 294
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 435 EDIHSLKPPLDHLCEILPRLQCRYYSISSSPKIYPNSVHITAVVVEYKTpTGRTNKGVTTTWLKEK-HPTDPpclVPIFV 513
Cdd:PRK06214  295 EKFPGIRPDPEAFVEALDPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERlAPGTR---VRVYV 370
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 514 RKSQ-FRLPTRPSTPIVMIGPGTGLAPFRGFIQERDfarkEGKEVGDTILYFGCRKSQEDFIYRDELEEYVKSGLLT-LH 591
Cdd:PRK06214  371 QKAHgFALPADPNTPIIMVGPGTGIAPFRAFLHERA----ATKAPGRNWLFFGHQRSATDFFYEDELNGLKAAGVLTrLS 446
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 592 TAFSREQAQKVYVTHLLENNKEELWRVIgEQNGHVYVCGDAKNMARDVHNILLKMVKERGNMSEVDAANYIKKMESQKRY 671
Cdd:PRK06214  447 LAWSRDGEEKTYVQDRMRENGAELWKWL-EEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAGRY 525

                  ....*
gi 1431124523 672 SSDVW 676
Cdd:PRK06214  526 QADVY 530
Flavodoxin_1 pfam00258
Flavodoxin;
84-221 3.35e-38

Flavodoxin;


Pssm-ID: 425562 [Multi-domain]  Cd Length: 142  Bit Score: 138.27  E-value: 3.35e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523  84 VFYGSQTGTAEEFAGRLAKEGIRYKMKGMVADPEECDMEelvrLKTIPNS-LAVFCLATYGEGDPTDNAMEFIDWL---- 158
Cdd:pfam00258   1 IFYGSQTGNTEKLAEAIAEGLGEAGFEVDVVDLDDVDET----LSEIEEEdLLLVVVSTWGEGEPPDNAKPFVDWLllfg 76
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1431124523 159 KNGDGDLTGLNYAVFGLGNKTYEHYNEIGVYVDNRLEQLGATRVVELGLGDDD---ANIEDDFITW 221
Cdd:pfam00258  77 TLEDGDLSGLKYAVFGLGDSGYEGFCGAAKKLDEKLSELGASRVGPLGEGDEDpqeDGLEEAFEAW 142
FldA COG0716
Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: ...
84-217 8.72e-13

Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440480 [Multi-domain]  Cd Length: 135  Bit Score: 65.69  E-value: 8.72e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523  84 VFYGSQTGTAEEFAGRLAKEgirykMKGMVADPEECDMEELVRLKtiPNSLAVFCLATYGeGDPTDNAMEFIDWLKNgdg 163
Cdd:COG0716     3 IVYGSTTGNTEKVAEAIAEA-----LGAAGVDLFEIEDADLDDLE--DYDLLILGTPTWA-GELPDDWEDFLEELKE--- 71
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1431124523 164 DLTGLNYAVFGLGNKtyEHYNEIGVYVDNRLEQLGATRVVELGLGDDDANIEDD 217
Cdd:COG0716    72 DLSGKKVALFGTGDS--SGYGDALGELKELLEEKGAKVVGGYDFEGSKAPDAED 123
flav_short TIGR01753
flavodoxin, short chain; Flavodoxins are small redox-active proteins with a flavin ...
86-216 2.38e-07

flavodoxin, short chain; Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction. [Energy metabolism, Electron transport]


Pssm-ID: 273789 [Multi-domain]  Cd Length: 140  Bit Score: 50.41  E-value: 2.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523  86 YGSQTGTAEEFAgRLAKEGIRYK------MKGMVADPEECDMEELVrlktipnslaVFCLATYGEGD-PTDnamEFIDWL 158
Cdd:TIGR01753   5 YASMTGNTEEMA-NIIAEGLKEAgaevdlLEVADADAEDLLSYDAV----------LLGCSTWGDEDlEQD---DFEPFF 70
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1431124523 159 KN-GDGDLTGLNYAVFGlgnkTYEHYNEIGVYVDN---RLEQLGATRVVELGLGDDDANIED 216
Cdd:TIGR01753  71 EElEDIDLGGKKVALFG----SGDWGYEFCEAVDDweeRLKEAGATIIAEGLKVDGDPEEED 128
PRK09004 PRK09004
FMN-binding protein MioC; Provisional
141-204 3.26e-07

FMN-binding protein MioC; Provisional


Pssm-ID: 181608 [Multi-domain]  Cd Length: 146  Bit Score: 50.22  E-value: 3.26e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1431124523 141 TYGEGDPTDNAMEFIDWLKNGDGDLTGLNYAVFGLGNKTYEHYNEIGVYVDNRLEQLGATRVVE 204
Cdd:PRK09004   56 THGAGDLPDNLQPFFEELQEQKPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGE 119
 
Name Accession Description Interval E-value
CYPOR cd06204
NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase ...
279-676 0e+00

NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99801 [Multi-domain]  Cd Length: 416  Bit Score: 648.16  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 279 DAKNPFLAPVKMNRELHGPaSDRSCMHIEFDIDGSKMRYETGDHLAVYPVNNPELVNKIGEQCGVN-LDTVFTLTNTDEE 357
Cdd:cd06204     1 DAKNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDdRDTVISLKSLDEP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 358 STKKHPFPCPCSYRTALTHYLDITSNPRTHVLKELAEYATDPAEKEKLKLMASttvEGKAAYQQWIIQDNRNIVHILEDI 437
Cdd:cd06204    80 ASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS---EGKDEYAKWIVEPHRNLLEVLQDF 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 438 HSLK---PPLDHLCEILPRLQCRYYSISSSPKIYPNSVHITAVVVEYKTPTGRTNKGVTTTWLK--------EKHPTDPP 506
Cdd:cd06204   157 PSAKptpPPFDFLIELLPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLalkpalngEKPPTPYY 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 507 CL----------VPIFVRKSQFRLPTRPSTPIVMIGPGTGLAPFRGFIQERDFARKEGKEVGDTILYFGCRKSQEDFIYR 576
Cdd:cd06204   237 LSgprkkgggskVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYK 316
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 577 DELEEYVKSG-LLTLHTAFSREQAQKVYVTHLLENNKEELWRVIGEQnGHVYVCGDAKNMARDVHNILLKMVKERGNMSE 655
Cdd:cd06204   317 DELEEYAKLGgLLELVTAFSREQPKKVYVQHRLAEHAEQVWELINEG-AYIYVCGDAKNMARDVEKTLLEILAEQGGMTE 395
                         410       420
                  ....*....|....*....|.
gi 1431124523 656 VDAANYIKKMESQKRYSSDVW 676
Cdd:cd06204   396 TEAEEYVKKLKTRGRYQEDVW 416
CysJ COG0369
Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases ...
78-676 0e+00

Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases [Nucleotide transport and metabolism, Inorganic ion transport and metabolism]; Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases is part of the Pathway/BioSystem: Cysteine biosynthesis


Pssm-ID: 440138 [Multi-domain]  Cd Length: 561  Bit Score: 561.31  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523  78 SGRSLVVFYGSQTGTAEEFAGRLAKEGiryKMKGMvaDPEECDMEElVRLKTIPN-SLAVFCLATYGEGDPTDNAMEFID 156
Cdd:COG0369    25 AGTPLTILYGSQTGNAEGLAEQLAERA---KAAGL--AVTLASLDD-YKPKDLAKeGLLLIVTSTYGEGEPPDNARAFYE 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 157 WLKN-GDGDLTGLNYAVFGLGNKTYEHYNEIGVYVDNRLEQLGATRVVELGlgDDDANIEDDFITWKDKFWPAVCEFFGI 235
Cdd:COG0369    99 FLHSkKAPKLDGLRYAVLGLGDSSYETFCQTGKDFDARLEELGATRLLPRV--DCDVDYEEAAEAWLAAVLAALAEALGA 176
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 236 EGAGEDVSirqykltehvdlpndriytgeiarlhsfTNQRPPYDAKNPFLAPVKMNRELHGPASDRSCMHIEFDIDGSKM 315
Cdd:COG0369   177 AAAAAAAA----------------------------AAAAPAYSRKNPFPATVLENRELTGRGSAKETRHIEIDLPGSGL 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 316 RYETGDHLAVYPVNNPELVNKIGEQCGVNLDTVFTLTNTdeestkkhpfpcPCSYRTALTHYLDITSNPRThVLKELAEY 395
Cdd:COG0369   229 SYEPGDALGVWPENDPALVDELLARLGLDGDEPVTLDGE------------PLSLREALTEHLELTRLTPP-LLEKYAEL 295
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 396 ATDPAekeklkLMASTTVEGKAAYQQWIiqDNRNIVHILEDIHSLKPPLDHLCEILPRLQCRYYSISSSPKIYPNSVHIT 475
Cdd:COG0369   296 TGNAE------LAALLADEDKAALREYL--AGRQLLDLLREFPAAELSAEELLELLRPLTPRLYSISSSPKAHPDEVHLT 367
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 476 AVVVEYKTpTGRTNKGVTTTWLKEKHPTDPpclVPIFVRKSQ-FRLPTRPSTPIVMIGPGTGLAPFRGFIQERDFARKEG 554
Cdd:COG0369   368 VGVVRYEA-SGRERKGVASTYLADLEEGDT---VPVFVEPNPnFRLPADPDTPIIMIGPGTGIAPFRAFLQEREARGASG 443
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 555 KevgdTILYFGCRKSQEDFIYRDELEEYVKSGLLT-LHTAFSREQAQKVYVTHLLENNKEELWRVIgEQNGHVYVCGDAK 633
Cdd:COG0369   444 K----NWLFFGDRHFTTDFLYQTELQAWLKDGVLTrLDLAFSRDQAEKIYVQHRLLEQGAELWAWL-EEGAHVYVCGDAS 518
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|...
gi 1431124523 634 NMARDVHNILLKMVKERGNMSEVDAANYIKKMESQKRYSSDVW 676
Cdd:COG0369   519 RMAKDVDAALLDIIAEHGGLSEEEAEEYLAELRAEKRYQRDVY 561
CyPoR_like cd06207
NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase ...
287-676 4.08e-142

NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99803 [Multi-domain]  Cd Length: 382  Bit Score: 419.76  E-value: 4.08e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 287 PVKMNRELHGPASDRSCMHIEFDIDGSKMRYETGDHLAVYPVNNPELVNKIGEQCGVNLDTVFTLTNTDEESTKkHPFPC 366
Cdd:cd06207     1 KVTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNEQQRGK-PPFPE 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 367 PCSYRTALTHYLDITSNPRTHVLKELAEYATDPAEKEKLKLMASTtvEGKAAYQQwiiQDNRNIVHILEDIHSLKPPLDH 446
Cdd:cd06207    80 PISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASR--EGRTEYKR---YEKYTYLEVLKDFPSVRPTLEQ 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 447 LCEILPRLQCRYYSISSSPKIYPNSVHITAVVVEYKTPTGRTNKGVTTTWLKEKHPTDPpclVPIFVRKSQFRLPTRPST 526
Cdd:cd06207   155 LLELCPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQR---VTVFIKKSSFKLPKDPKK 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 527 PIVMIGPGTGLAPFRGFIQERDFARKEGKEVGDTILYFGCRKSQEDFIYRDELEEYVKSG-LLTLHTAFSREQAQKVYVT 605
Cdd:cd06207   232 PIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGvLTTLGTAFSRDQPKKVYVQ 311
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1431124523 606 HLLENNKEELWRVIGEQNGHVYVCGDAKNMARDVHNILLKMVKERGNMSEVDAANYIKKMESQKRYSSDVW 676
Cdd:cd06207   312 DLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382
Nitric_oxide_synthase cd06202
The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses ...
293-675 4.02e-124

The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.


Pssm-ID: 99799 [Multi-domain]  Cd Length: 406  Bit Score: 374.36  E-value: 4.02e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 293 ELHGPASDRSCMHIEFDIDGSK-MRYETGDHLAVYPVNNPELVNKIGE--QCGVNLDTVFTLTNTDEESTKKHPFPC--- 366
Cdd:cd06202     7 NLQSPKSSRSTILVKLDTNGAQeLHYQPGDHVGIFPANRPELVDALLDrlHDAPPPDQVIKLEVLEERSTALGIIKTwtp 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 367 -----PCSYRTALTHYLDITSNPRTHVLKELAEYATDPAEKEKLKLMASttveGKAAYQQWIIQDNRNIVHILEDIHSLK 441
Cdd:cd06202    87 herlpPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGK----GSSEYEDWKWYKNPNILEVLEEFPSLQ 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 442 PPLDHLCEILPRLQCRYYSISSSPKIYPNSVHITAVVVEYKTPTGR--TNKGVTTTWLKEKHPTDppcLVPIFVRKSQ-F 518
Cdd:cd06202   163 VPASLLLTQLPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQgpVHHGVCSTWLNGLTPGD---TVPCFVRSAPsF 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 519 RLPTRPSTPIVMIGPGTGLAPFRGFIQERDF----ARKEGKEVGDTILYFGCRKSQEDFIYRDELEEYVKSGLLT-LHTA 593
Cdd:cd06202   240 HLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYdlrmSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGVLTeVYTA 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 594 FSREQAQ-KVYVTHLLENNKEELWRVIGEQNGHVYVCGDAkNMARDVHNILLKMVKERGNMSEVDAANYIKKMESQKRYS 672
Cdd:cd06202   320 LSREPGKpKTYVQDLLKEQAESVYDALVREGGHIYVCGDV-TMAEDVSQTIQRILAEHGNMSAEEAEEFILKLRDENRYH 398

                  ...
gi 1431124523 673 SDV 675
Cdd:cd06202   399 EDI 401
SiR cd06199
Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta ...
291-676 5.67e-124

Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.


Pssm-ID: 99796 [Multi-domain]  Cd Length: 360  Bit Score: 372.33  E-value: 5.67e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 291 NRELHGPASDRSCMHIEFDIDGSKMRYETGDHLAVYPVNNPELVNKIgeqcgvnLDtvftLTNTDEESTKKHPFPCPCSY 370
Cdd:cd06199     5 NRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDEL-------LA----ALGLSGDEPVSTVGGGTLPL 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 371 RTALTHYLDITSNprthVLKELAEYATDPAEKEKLKLmasttvEGKAAYQQWiiqdnRNIVHILEDIH--SLKPPLDHLC 448
Cdd:cd06199    74 REALIKHYEITTL----LLALLESYAADTGALELLAL------AALEAVLAF-----AELRDVLDLLPipPARLTAEELL 138
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 449 EILPRLQCRYYSISSSPKIYPNSVHITAVVVEYKTpTGRTNKGVTTTWLKEKHPTDPPclVPIFVRKSQ-FRLPTRPSTP 527
Cdd:cd06199   139 DLLRPLQPRLYSIASSPKAVPDEVHLTVAVVRYES-HGRERKGVASTFLADRLKEGDT--VPVFVQPNPhFRLPEDPDAP 215
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 528 IVMIGPGTGLAPFRGFIQERDFARKEGKEVgdtiLYFGCRKSQEDFIYRDELEEYVKSGLLT-LHTAFSREQAQKVYVTH 606
Cdd:cd06199   216 IIMVGPGTGIAPFRAFLQEREATGAKGKNW----LFFGERHFATDFLYQDELQQWLKDGVLTrLDTAFSRDQAEKVYVQD 291
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 607 LLENNKEELWRVIgEQNGHVYVCGDAKNMARDVHNILLKMVKERGNMSEVDAANYIKKMESQKRYSSDVW 676
Cdd:cd06199   292 RMREQGAELWAWL-EEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDVY 360
methionine_synthase_red cd06203
Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for ...
306-676 8.69e-101

Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99800 [Multi-domain]  Cd Length: 398  Bit Score: 313.87  E-value: 8.69e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 306 IEFDIDGSKMRYETGDHLAVYPVNNPELVNKIGEQCGVNL--DTVFTLtNTDEESTKKHP-----FPCPCSYRTALTHYL 378
Cdd:cd06203    20 LTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEqaDQPCEV-KVVPNTKKKNAkvpvhIPKVVTLRTILTWCL 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 379 DITSNPRTHVLKELAEYATDPAEKEKLKLMASTtvEGKAAYQQWIIQDNRNIVHILEDIHSLKPPLDHLCEILPRLQCRY 458
Cdd:cd06203    99 DIRAIPKKPLLRALAEFTSDDNEKRRLEELCSK--QGSEDYTDFVRKRGLSLLDLLEAFPSCRPPLSLLIEHLPRLQPRP 176
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 459 YSISSSPKIYPNSVHITAVVVEYKTPtgrtnkGVTTTWLKEK--HPTDPPCLVPIFVRKS-QFRLPTR-PSTPIVMIGPG 534
Cdd:cd06203   177 YSIASSPLEGPGKLRFIFSVVEFPAK------GLCTSWLESLclSASSHGVKVPFYLRSSsRFRLPPDdLRRPIIMVGPG 250
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 535 TGLAPFRGFIQERDFARKE--GKEVGDTILYFGCRKSQEDFIYRDELEEYVKSGLLT-LHTAFSREQ---AQKVYVTHLL 608
Cdd:cd06203   251 TGVAPFLGFLQHREKLKEShtETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILTrLIVAFSRDEndgSTPKYVQDKL 330
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1431124523 609 ENNKEELWRVIGEQNGHVYVCGDAKNMARDVHNILLKMVKERGNMSEVDAANYIKKMESQKRYSSDVW 676
Cdd:cd06203   331 EERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLARLRKEDRYLEDVW 398
bifunctional_CYPOR cd06206
These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase ...
288-676 4.11e-98

These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99802 [Multi-domain]  Cd Length: 384  Bit Score: 306.49  E-value: 4.11e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 288 VKMNRELHGPASDRSCMHIEFDI-DGskMRYETGDHLAVYPVNNPELVNKIGEQCGVNLDTVFTLTNTdeESTKKHPFPC 366
Cdd:cd06206     2 VVENRELTAPGVGPSKRHLELRLpDG--MTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISAS--GSATGLPLGT 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 367 PCSYRTALTHYLDItSNPRT-HVLKELAEYATDPAEKEKLKLMAsttvegKAAYQQWIIQDNRNIVHILEDIHSLKPPLD 445
Cdd:cd06206    78 PISVSELLSSYVEL-SQPATrRQLAALAEATRCPDTKALLERLA------GEAYAAEVLAKRVSVLDLLERFPSIALPLA 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 446 HLCEILPRLQCRYYSISSSPKIYPNSVHITAVVVEYKTPTGRTN-KGVTTTWLKEKHPTDPpclVPIFVRKSQ--FRLPT 522
Cdd:cd06206   151 TFLAMLPPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRyRGVASSYLSSLRPGDS---IHVSVRPSHsaFRPPS 227
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 523 RPSTPIVMIGPGTGLAPFRGFIQERDFARKEGKEVGDTILYFGCRKSQEDFIYRDELEEYVKSGLLTLHTAFSR--EQAQ 600
Cdd:cd06206   228 DPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGVVSVRRAYSRppGGGC 307
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 601 KvYVTHLLENNKEELWRVIgEQNGHVYVCGDAKnMARDVHNILLKMVKER----GNMSEVDAANYIKKMESQKRYSSDVW 676
Cdd:cd06206   308 R-YVQDRLWAEREEVWELW-EQGARVYVCGDGR-MAPGVREVLKRIYAEKdergGGSDDEEAEEWLEELRNKGRYATDVF 384
CYPOR_like cd06182
NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase ...
426-676 1.28e-95

NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99779 [Multi-domain]  Cd Length: 267  Bit Score: 295.79  E-value: 1.28e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 426 DNRNIVHILEDIHSLK----PPLDHLcEILP--RLQCRYYSISSSPKIYPNSVHITAVVVEYKTPTGRTNKGVTTTWLKE 499
Cdd:cd06182    13 SPRSTRHLEFDLSGNSvlkyQPGDHL-GVIPpnPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAG 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 500 KHPTDppcLVPIFVRKSQ-FRLPTRPSTPIVMIGPGTGLAPFRGFIQERDFARKEGKEVGDTILYFGCRKSQEDFIYRDE 578
Cdd:cd06182    92 LQLGA---KVTVFIRPAPsFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREE 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 579 LEEYVKSGLLT-LHTAFSREQA-QKVYVTHLLENNKEELWRVIgEQNGHVYVCGDAKNMARDVHNILLKMVKERGNMSEV 656
Cdd:cd06182   169 LQEALKDGALTrLDVAFSREQAePKVYVQDKLKEHAEELRRLL-NEGAHIYVCGDAKSMAKDVEDALVKIIAKAGGVDES 247
                         250       260
                  ....*....|....*....|
gi 1431124523 657 DAANYIKKMESQKRYSSDVW 676
Cdd:cd06182   248 DAEEYLKELEDEGRYVEDVW 267
FAD_binding_1 pfam00667
FAD binding domain; This domain is found in sulfite reductase, NADPH cytochrome P450 reductase, ...
277-496 1.69e-92

FAD binding domain; This domain is found in sulfite reductase, NADPH cytochrome P450 reductase, Nitric oxide synthase and methionine synthase reductase.


Pssm-ID: 395540 [Multi-domain]  Cd Length: 219  Bit Score: 285.77  E-value: 1.69e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 277 PYDAKNPFLAPVKMNRELHGPASDRSCMHIEFDIDGSKMRYETGDHLAVYPVNNPELVNKIGEQCGVNL--DTVFTLTNT 354
Cdd:pfam00667   1 PFDAKKPFTAPVLSNRELTSPSSDRNCIHVELDISGSGLTYQTGDHLGVYPPNNEELVEELLERLGLDPkpDTVVLLKTL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 355 DEesTKKHPFPCPCSYRTALTHYLDITSNPRTHVLKELAEYATDPAEKEKLKLMASTtvEGKAAYQQWIIQDNRNIVHIL 434
Cdd:pfam00667  81 DE--RVKPPRLPPTTYRQALKYYLDITGPPSKQLLRLLAQFAPEEEEKQRLEFLSSD--AGAREYKRWKLNHAPTLLEVL 156
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1431124523 435 EDIHSLKPPLDHLCEILPRLQCRYYSISSSPKIYPNSVHITAVVVEYKT-PTGRTNKGVTTTW 496
Cdd:pfam00667 157 EEFPSVKLPADFLLTQLPQLQPRYYSISSSSKVHPNEVHLTVVVVEYETdGEGRIHYGVCSNW 219
PRK06214 PRK06214
sulfite reductase subunit alpha;
276-676 4.50e-91

sulfite reductase subunit alpha;


Pssm-ID: 235745 [Multi-domain]  Cd Length: 530  Bit Score: 293.13  E-value: 4.50e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 276 PPYDAKNPFLAPVKMNRELHGPASDRSCMHIEFDIDGSKMRYETGDHLAVYPVNNPELVNKIGEQCGVNLDTVFtltntd 355
Cdd:PRK06214  161 LGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI------ 234
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 356 EESTkkhpfpcpcsYRTALTHylDITSNPRTHVLKELAEYATDPAEKEKLKLMAS-TTVEGKAAYQqwiiqdnrNIVHIL 434
Cdd:PRK06214  235 GGKT----------LREALLE--DVSLGPAPDGLFELLSYITGGAARKKARALAAgEDPDGDAATL--------DVLAAL 294
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 435 EDIHSLKPPLDHLCEILPRLQCRYYSISSSPKIYPNSVHITAVVVEYKTpTGRTNKGVTTTWLKEK-HPTDPpclVPIFV 513
Cdd:PRK06214  295 EKFPGIRPDPEAFVEALDPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERlAPGTR---VRVYV 370
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 514 RKSQ-FRLPTRPSTPIVMIGPGTGLAPFRGFIQERDfarkEGKEVGDTILYFGCRKSQEDFIYRDELEEYVKSGLLT-LH 591
Cdd:PRK06214  371 QKAHgFALPADPNTPIIMVGPGTGIAPFRAFLHERA----ATKAPGRNWLFFGHQRSATDFFYEDELNGLKAAGVLTrLS 446
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 592 TAFSREQAQKVYVTHLLENNKEELWRVIgEQNGHVYVCGDAKNMARDVHNILLKMVKERGNMSEVDAANYIKKMESQKRY 671
Cdd:PRK06214  447 LAWSRDGEEKTYVQDRMRENGAELWKWL-EEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAGRY 525

                  ....*
gi 1431124523 672 SSDVW 676
Cdd:PRK06214  526 QADVY 530
cysJ PRK10953
NADPH-dependent assimilatory sulfite reductase flavoprotein subunit;
57-676 2.26e-85

NADPH-dependent assimilatory sulfite reductase flavoprotein subunit;


Pssm-ID: 182862 [Multi-domain]  Cd Length: 600  Bit Score: 280.07  E-value: 2.26e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523  57 QPTSFAAVPPSEnsfikklkTSGRSLVVFYGSQTGTAEEFAGRLAKEGIRYKMKGMVADPEECDMEELVRLKtipnsLAV 136
Cdd:PRK10953   47 QPGAVAATPAPA--------AEMPGITLISASQTGNARRVAEQLRDDLLAAKLNVNLVNAGDYKFKQIAQEK-----LLI 113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 137 FCLATYGEGDPTDNAMEFIDWLKNGDG-DLTGLNYAVFGLGNKTYEHYNEIGVYVDNRLEQLGATRVVELGlgDDDANIE 215
Cdd:PRK10953  114 VVTSTQGEGEPPEEAVALHKFLFSKKApKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRV--DADVEYQ 191
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 216 DDFITWKDKFwpavceffgiegagedVSIRQYKLTEhVDLPNDRIYTGEIARLHSftnqrPPYDAKNPFLAPVKMNRELH 295
Cdd:PRK10953  192 AAASEWRARV----------------VDALKSRAPA-VAAPSQSVATGAVNEIHT-----SPYSKEAPLTASLSVNQKIT 249
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 296 GPASDRSCMHIEFDIDGSKMRYETGDHLAVYPVNNPELVNKIGEQCGvnldtvftLTNTDEESTKKHPFPcpcsYRTALT 375
Cdd:PRK10953  250 GRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLW--------LKGDEPVTVDGKTLP----LAEALQ 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 376 HYLDITSNprTHVLKElaEYATDPAEKEKLKLMASttvegKAAYQQWiiQDNRNIVHILEDIHSlKPPLDHLCEILPRLQ 455
Cdd:PRK10953  318 WHFELTVN--TANIVE--NYATLTRSETLLPLVGD-----KAALQHY--AATTPIVDMVRFAPA-QLDAEQLIGLLRPLT 385
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 456 CRYYSISSSPKIYPNSVHITAVVVEYKTpTGRTNKGVTTTWLKEKHPTDPPclVPIFVRKS-QFRLPTRPSTPIVMIGPG 534
Cdd:PRK10953  386 PRLYSIASSQAEVENEVHITVGVVRYDI-EGRARAGGASSFLADRLEEEGE--VRVFIEHNdNFRLPANPETPVIMIGPG 462
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 535 TGLAPFRGFIQERDFARKEGKevgdTILYFGCRKSQEDFIYRDELEEYVKSGLLT-LHTAFSREQAQKVYVTHLLENNKE 613
Cdd:PRK10953  463 TGIAPFRAFMQQRAADGAPGK----NWLFFGNPHFTEDFLYQVEWQRYVKEGLLTrIDLAWSRDQKEKIYVQDKLREQGA 538
                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1431124523 614 ELWRVIgEQNGHVYVCGDAKNMARDVHNILLKMVKERGNMSEVDAANYIKKMESQKRYSSDVW 676
Cdd:PRK10953  539 ELWRWI-NDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 600
Flavodoxin_1 pfam00258
Flavodoxin;
84-221 3.35e-38

Flavodoxin;


Pssm-ID: 425562 [Multi-domain]  Cd Length: 142  Bit Score: 138.27  E-value: 3.35e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523  84 VFYGSQTGTAEEFAGRLAKEGIRYKMKGMVADPEECDMEelvrLKTIPNS-LAVFCLATYGEGDPTDNAMEFIDWL---- 158
Cdd:pfam00258   1 IFYGSQTGNTEKLAEAIAEGLGEAGFEVDVVDLDDVDET----LSEIEEEdLLLVVVSTWGEGEPPDNAKPFVDWLllfg 76
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1431124523 159 KNGDGDLTGLNYAVFGLGNKTYEHYNEIGVYVDNRLEQLGATRVVELGLGDDD---ANIEDDFITW 221
Cdd:pfam00258  77 TLEDGDLSGLKYAVFGLGDSGYEGFCGAAKKLDEKLSELGASRVGPLGEGDEDpqeDGLEEAFEAW 142
FNR_like cd00322
Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a ...
430-652 2.52e-34

Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).


Pssm-ID: 99778 [Multi-domain]  Cd Length: 223  Bit Score: 130.26  E-value: 2.52e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 430 IVHILEDIHSLKPPLDHLCEILP------------RLQCRYYSISSSPKiYPNSVHITavvveyktpTGRTNKGVTTTWL 497
Cdd:cd00322     3 TEDVTDDVRLFRLQLPNGFSFKPgqyvdlhlpgdgRGLRRAYSIASSPD-EEGELELT---------VKIVPGGPFSAWL 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 498 KEKHPTDPpclVPIFVRKSQFRLPTRPSTPIVMIGPGTGLAPFRGFIQerdfARKEGKEVGDTILYFGCRkSQEDFIYRD 577
Cdd:cd00322    73 HDLKPGDE---VEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLR----HLAADKPGGEITLLYGAR-TPADLLFLD 144
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1431124523 578 ELEEYVKSG-LLTLHTAFSREQAQKVYVTHLLENNKEELWRVIGEQNGHVYVCGDAkNMARDVHNILLKMVKERGN 652
Cdd:cd00322   145 ELEELAKEGpNFRLVLALSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGPP-AMAKAVREALVSLGVPEER 219
CYPOR_like_FNR cd06208
These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but ...
424-676 5.95e-33

These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. CYPOR serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases, sulfite reducatase, and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal FNR-like FAD and NAD binding module, an FMN-binding domain, and an additional connecting domain (inserted within the FAD binding region) that orients the FNR and FMN -binding domains. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99804 [Multi-domain]  Cd Length: 286  Bit Score: 128.59  E-value: 5.95e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 424 IQDNRNIV---------HILEDIHSLKPPLD-HLCEILP---------RLQCRYYSISSSPKI-YPNSVHITAVV---VE 480
Cdd:cd06208    13 VVSNTRLTgpdapgevcHIVIDHGGKLPYLEgQSIGIIPpgtdakngkPHKLRLYSIASSRYGdDGDGKTLSLCVkrlVY 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 481 YKTPTGRTNKGVTTTWLKEKHPTDPPCLV-PIfvrKSQFRLPTRPSTPIVMIGPGTGLAPFRGFIQERdFARKEG--KEV 557
Cdd:cd06208    93 TDPETDETKKGVCSNYLCDLKPGDDVQITgPV---GKTMLLPEDPNATLIMIATGTGIAPFRSFLRRL-FREKHAdyKFT 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 558 GDTILYFGCRKSQEdFIYRDELEEYVKS--GLLTLHTAFSREQ----AQKVYVTHLLENNKEELWRVIGEQNGHVYVCGd 631
Cdd:cd06208   169 GLAWLFFGVPNSDS-LLYDDELEKYPKQypDNFRIDYAFSREQknadGGKMYVQDRIAEYAEEIWNLLDKDNTHVYICG- 246
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1431124523 632 AKNMARDVHNILLKMVKERGNMSEVDaanyiKKMESQKRYSSDVW 676
Cdd:cd06208   247 LKGMEPGVDDALTSVAEGGLAWEEFW-----ESLKKKGRWHVEVY 286
SiR_like1 cd06200
Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta ...
447-676 2.71e-27

Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99797  Cd Length: 245  Bit Score: 110.83  E-value: 2.71e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 447 LCEILPR--LQCRYYSISSspkiYPNSVHITAVVVEYKTPTGRTnkGVTTTWLKEKHPTDPPclVPIFVRK-SQFRLPTr 523
Cdd:cd06200    37 IAEIGPRhpLPHREYSIAS----LPADGALELLVRQVRHADGGL--GLGSGWLTRHAPIGAS--VALRLREnPGFHLPD- 107
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 524 PSTPIVMIGPGTGLAPFRGFIQERDFArkegkEVGDTILYFGCRKSQEDFIYRDELEEYVKSGLLT-LHTAFSREQAQKV 602
Cdd:cd06200   108 DGRPLILIGNGTGLAGLRSHLRARARA-----GRHRNWLLFGERQAAHDFFCREELEAWQAAGHLArLDLAFSRDQAQKR 182
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1431124523 603 YVTHLLENNKEELWRVIgEQNGHVYVCGDAKNMARDVHNILLKMVKErgnmSEVDAanyikkMESQKRYSSDVW 676
Cdd:cd06200   183 YVQDRLRAAADELRAWV-AEGAAIYVCGSLQGMAPGVDAVLDEILGE----EAVEA------LLAAGRYRRDVY 245
SiR_like2 cd06201
Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta ...
457-676 9.49e-23

Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99798 [Multi-domain]  Cd Length: 289  Bit Score: 98.94  E-value: 9.49e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 457 RYYSISSSPK--IYPNSVHitavvveyktptgRTNKGVTTTWLKEKHPTDppcLVPIFVRK-SQFRLPTRPStPIVMIGP 533
Cdd:cd06201   101 RFYSLASSSSdgFLEICVR-------------KHPGGLCSGYLHGLKPGD---TIKAFIRPnPSFRPAKGAA-PVILIGA 163
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 534 GTGLAPFRGFIQERDfARKEgkevgdTILYFGCRKSQEDFIYRDELEEYVKSGLLT-LHTAFSREQaQKVYVTHLLENNK 612
Cdd:cd06201   164 GTGIAPLAGFIRANA-ARRP------MHLYWGGRDPASDFLYEDELDQYLADGRLTqLHTAFSRTP-DGAYVQDRLRADA 235
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1431124523 613 EELWRVIgEQNGHVYVCGdAKNMARDVHNILLKMVKERGnmSEVDaanyikKMESQKRYSSDVW 676
Cdd:cd06201   236 ERLRRLI-EDGAQIMVCG-SRAMAQGVAAVLEEILAPQP--LSLD------ELKLQGRYAEDVY 289
NAD_binding_1 pfam00175
Oxidoreductase NAD-binding domain; Xanthine dehydrogenases, that also bind FAD/NAD, have ...
530-640 8.19e-20

Oxidoreductase NAD-binding domain; Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity.


Pssm-ID: 425503 [Multi-domain]  Cd Length: 109  Bit Score: 85.00  E-value: 8.19e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 530 MIGPGTGLAPFRGFIQERDFARKEGKEVgdtILYFGCRkSQEDFIYRDELEEYVKS--GLLTLHTAFSREQA----QKVY 603
Cdd:pfam00175   1 MIAGGTGIAPVRSMLRAILEDPKDPTQV---VLVFGNR-NEDDILYREELDELAEKhpGRLTVVYVVSRPEAgwtgGKGR 76
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1431124523 604 VTHLLENNKEElwrvIGEQNGHVYVCGdAKNMARDVH 640
Cdd:pfam00175  77 VQDALLEDHLS----LPDEETHVYVCG-PPGMIKAVR 108
PLN03115 PLN03115
ferredoxin--NADP(+) reductase; Provisional
457-676 1.40e-18

ferredoxin--NADP(+) reductase; Provisional


Pssm-ID: 215585 [Multi-domain]  Cd Length: 367  Bit Score: 88.13  E-value: 1.40e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 457 RYYSISSS-PKIYPNSVHITAVV--VEYKTPTGRTNKGVTTTWLKEKHPTDPPCLV-PIfvrKSQFRLPTRPSTPIVMIG 532
Cdd:PLN03115  146 RLYSIASSaLGDFGDSKTVSLCVkrLVYTNDQGEIVKGVCSNFLCDLKPGAEVKITgPV---GKEMLMPKDPNATIIMLA 222
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 533 PGTGLAPFRGFIQERDFARKEG-KEVGDTILYFGCRKSqEDFIYRDELEEYVKSGL--LTLHTAFSREQA----QKVYVT 605
Cdd:PLN03115  223 TGTGIAPFRSFLWKMFFEKHDDyKFNGLAWLFLGVPTS-SSLLYKEEFEKMKEKAPenFRLDFAVSREQTnakgEKMYIQ 301
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1431124523 606 HLLENNKEELWRVIGEQNGHVYVCGdAKNMARDVHNILLKMVKERGnmseVDAANYIKKMESQKRYSSDVW 676
Cdd:PLN03115  302 TRMAEYAEELWELLKKDNTYVYMCG-LKGMEKGIDDIMVSLAAKDG----IDWFEYKKQLKKAEQWNVEVY 367
PLN03116 PLN03116
ferredoxin--NADP+ reductase; Provisional
524-651 3.56e-15

ferredoxin--NADP+ reductase; Provisional


Pssm-ID: 215586 [Multi-domain]  Cd Length: 307  Bit Score: 76.68  E-value: 3.56e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 524 PSTPIVMIGPGTGLAPFRGFIQeRDFARK--EGKEVGDTILYFGCRKSqEDFIYRDELEEYVKS--GLLTLHTAFSREQA 599
Cdd:PLN03116  155 PNATHIMVATGTGIAPFRGFLR-RMFMEDvpAFKFGGLAWLFLGVANS-DSLLYDDEFERYLKDypDNFRYDYALSREQK 232
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1431124523 600 Q----KVYVTHLLENNKEELWRVIgEQNGHVYVCGdAKNMARDVHNILLKMVKERG 651
Cdd:PLN03116  233 NkkggKMYVQDKIEEYSDEIFKLL-DNGAHIYFCG-LKGMMPGIQDTLKRVAEERG 286
Fpr COG1018
Flavodoxin/ferredoxin--NADP reductase [Energy production and conversion];
457-646 4.35e-15

Flavodoxin/ferredoxin--NADP reductase [Energy production and conversion];


Pssm-ID: 440641 [Multi-domain]  Cd Length: 231  Bit Score: 75.21  E-value: 4.35e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 457 RYYSISSSPkiYPNSVHITAVVVEyktptgrtnKGVTTTWLKEK-HPTDPpclvpIFVRKSQ--FRLPTRPSTPIVMIGP 533
Cdd:COG1018    53 RAYSLSSAP--GDGRLEITVKRVP---------GGGGSNWLHDHlKVGDT-----LEVSGPRgdFVLDPEPARPLLLIAG 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 534 GTGLAPFRGFIqeRDFARKEGKEvgDTILYFGCRkSQEDFIYRDELEEYVKSGL-LTLHTAFSREQAqkVYVTHLlenNK 612
Cdd:COG1018   117 GIGITPFLSML--RTLLARGPFR--PVTLVYGAR-SPADLAFRDELEALAARHPrLRLHPVLSREPA--GLQGRL---DA 186
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1431124523 613 EELWRVIGEQNG-HVYVCGDAkNMARDVHNILLKM 646
Cdd:COG1018   187 ELLAALLPDPADaHVYLCGPP-PMMEAVRAALAEL 220
FNR1 cd06195
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible ...
457-653 1.38e-13

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99792 [Multi-domain]  Cd Length: 241  Bit Score: 71.06  E-value: 1.38e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 457 RYYSISSSPkiYPNSVHITAVVVEyktptgrtnKGVTTTWLKEKHPTDPpclvpIFVRKS---QFRL-PTRPSTPIVMIG 532
Cdd:cd06195    45 RAYSIASAP--YEENLEFYIILVP---------DGPLTPRLFKLKPGDT-----IYVGKKptgFLTLdEVPPGKRLWLLA 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 533 PGTGLAPFRGFIQERDFARKEGKevgdTILYFGCRkSQEDFIYRDELEEYVKS--GLLTLHTAFSREQAQKV---YVTHL 607
Cdd:cd06195   109 TGTGIAPFLSMLRDLEIWERFDK----IVLVHGVR-YAEELAYQDEIEALAKQynGKFRYVPIVSREKENGAltgRIPDL 183
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1431124523 608 LENnkEELWRVIGE----QNGHVYVCGDaKNMARDVHNILlkmvKERGNM 653
Cdd:cd06195   184 IES--GELEEHAGLpldpETSHVMLCGN-PQMIDDTQELL----KEKGFS 226
FldA COG0716
Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: ...
84-217 8.72e-13

Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440480 [Multi-domain]  Cd Length: 135  Bit Score: 65.69  E-value: 8.72e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523  84 VFYGSQTGTAEEFAGRLAKEgirykMKGMVADPEECDMEELVRLKtiPNSLAVFCLATYGeGDPTDNAMEFIDWLKNgdg 163
Cdd:COG0716     3 IVYGSTTGNTEKVAEAIAEA-----LGAAGVDLFEIEDADLDDLE--DYDLLILGTPTWA-GELPDDWEDFLEELKE--- 71
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1431124523 164 DLTGLNYAVFGLGNKtyEHYNEIGVYVDNRLEQLGATRVVELGLGDDDANIEDD 217
Cdd:COG0716    72 DLSGKKVALFGTGDS--SGYGDALGELKELLEEKGAKVVGGYDFEGSKAPDAED 123
FNR_iron_sulfur_binding_2 cd06216
Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding ...
448-630 9.80e-13

Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99812 [Multi-domain]  Cd Length: 243  Bit Score: 68.41  E-value: 9.80e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 448 CEILPRLQCRYYSISSSPKIYPNSVHITavvVEyKTPTGRTnkgvtTTWLKEKH-PTDppclvpiFVRKSQ----FRLPT 522
Cdd:cd06216    56 VEIDGVRHWRSYSLSSSPTQEDGTITLT---VK-AQPDGLV-----SNWLVNHLaPGD-------VVELSQpqgdFVLPD 119
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 523 RPSTPIVMIGPGTGLAPFRGFIQERDfARKEGKEVgdTILYFGcrKSQEDFIYRDELEEY-VKSGLLTLHTAFSREQAQK 601
Cdd:cd06216   120 PLPPRLLLIAAGSGITPVMSMLRTLL-ARGPTADV--VLLYYA--RTREDVIFADELRALaAQHPNLRLHLLYTREELDG 194
                         170       180       190
                  ....*....|....*....|....*....|
gi 1431124523 602 vyvtHLlenNKEELWRVIGEQNG-HVYVCG 630
Cdd:cd06216   195 ----RL---SAAHLDAVVPDLADrQVYACG 217
Mcr1 COG0543
NAD(P)H-flavin reductase [Coenzyme transport and metabolism, Energy production and conversion]; ...
457-645 2.64e-11

NAD(P)H-flavin reductase [Coenzyme transport and metabolism, Energy production and conversion];


Pssm-ID: 440309 [Multi-domain]  Cd Length: 247  Bit Score: 64.11  E-value: 2.64e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 457 RYYSISSSPKIyPNSVHITAVVVeyktptgrtnkGVTTTWLKEKHPTDPpclvpIFVR----KSqFRLPTRPStPIVMIG 532
Cdd:COG0543    43 RPFSIASAPRE-DGTIELHIRVV-----------GKGTRALAELKPGDE-----LDVRgplgNG-FPLEDSGR-PVLLVA 103
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 533 PGTGLAPFRGFIQErdfARKEGKEVgdtILYFGCRkSQEDFIYRDELEEYvksGLLTLHTAfSRE--QAQKVYVTHLLEN 610
Cdd:COG0543   104 GGTGLAPLRSLAEA---LLARGRRV---TLYLGAR-TPEDLYLLDELEAL---ADFRVVVT-TDDgwYGRKGFVTDALKE 172
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1431124523 611 NKEElwrvigEQNGHVYVCGdAKNMARDVHNILLK 645
Cdd:COG0543   173 LLAE------DSGDDVYACG-PPPMMKAVAELLLE 200
FNR_iron_sulfur_binding_3 cd06217
Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding ...
457-646 3.25e-08

Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99813 [Multi-domain]  Cd Length: 235  Bit Score: 54.96  E-value: 3.25e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 457 RYYSISSSPKIyPNSVHITavvVEyktptgRTNKGVTTTWLKEK-HPTDPpclvpIFVRK--SQFRLPTRPSTPIVMIGP 533
Cdd:cd06217    51 RSYSIASSPTQ-RGRVELT---VK------RVPGGEVSPYLHDEvKVGDL-----LEVRGpiGTFTWNPLHGDPVVLLAG 115
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 534 GTGLAPFRGFIQER-DFARKegkevGDTILYFGCRkSQEDFIYRDELEEYVKSGL-LTLHTAFSREQ-AQKVYVTHLLen 610
Cdd:cd06217   116 GSGIVPLMSMIRYRrDLGWP-----VPFRLLYSAR-TAEDVIFRDELEQLARRHPnLHVTEALTRAApADWLGPAGRI-- 187
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1431124523 611 NKEELWRVIGEQNGH-VYVCGDAkNMARDVHNILLKM 646
Cdd:cd06217   188 TADLIAELVPPLAGRrVYVCGPP-AFVEAATRLLLEL 223
FNR_like_1 cd06196
Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain ...
527-646 3.51e-08

Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.


Pssm-ID: 99793 [Multi-domain]  Cd Length: 218  Bit Score: 54.55  E-value: 3.51e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 527 PIVMIGPGTGLAPFRGFIqeRDFARKeGKEVGDTILYfgCRKSQEDFIYRDELEEYVksGLLTLHTaFSREQAQKVYVTH 606
Cdd:cd06196   101 PGVFIAGGAGITPFIAIL--RDLAAK-GKLEGNTLIF--ANKTEKDIILKDELEKML--GLKFINV-VTDEKDPGYAHGR 172
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1431124523 607 LlenNKEELWRVIGEQNGHVYVCGDAKnMARDVHNILLKM 646
Cdd:cd06196   173 I---DKAFLKQHVTDFNQHFYVCGPPP-MEEAINGALKEL 208
flav_short TIGR01753
flavodoxin, short chain; Flavodoxins are small redox-active proteins with a flavin ...
86-216 2.38e-07

flavodoxin, short chain; Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction. [Energy metabolism, Electron transport]


Pssm-ID: 273789 [Multi-domain]  Cd Length: 140  Bit Score: 50.41  E-value: 2.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523  86 YGSQTGTAEEFAgRLAKEGIRYK------MKGMVADPEECDMEELVrlktipnslaVFCLATYGEGD-PTDnamEFIDWL 158
Cdd:TIGR01753   5 YASMTGNTEEMA-NIIAEGLKEAgaevdlLEVADADAEDLLSYDAV----------LLGCSTWGDEDlEQD---DFEPFF 70
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1431124523 159 KN-GDGDLTGLNYAVFGlgnkTYEHYNEIGVYVDN---RLEQLGATRVVELGLGDDDANIED 216
Cdd:TIGR01753  71 EElEDIDLGGKKVALFG----SGDWGYEFCEAVDDweeRLKEAGATIIAEGLKVDGDPEEED 128
PRK09004 PRK09004
FMN-binding protein MioC; Provisional
141-204 3.26e-07

FMN-binding protein MioC; Provisional


Pssm-ID: 181608 [Multi-domain]  Cd Length: 146  Bit Score: 50.22  E-value: 3.26e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1431124523 141 TYGEGDPTDNAMEFIDWLKNGDGDLTGLNYAVFGLGNKTYEHYNEIGVYVDNRLEQLGATRVVE 204
Cdd:PRK09004   56 THGAGDLPDNLQPFFEELQEQKPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGE 119
PRK08105 PRK08105
flavodoxin; Provisional
86-205 3.49e-07

flavodoxin; Provisional


Pssm-ID: 181230 [Multi-domain]  Cd Length: 149  Bit Score: 50.27  E-value: 3.49e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523  86 YGSQTGTAEEFAGRLAKEGIRYKMKgmvadpEECDMEELVRLKtipNSLAVFCLATYGEGDPTDNAMEFIDWLKNGDGDL 165
Cdd:PRK08105   12 YGNALLVAEEAEAILTAQGHEVTLF------EDPELSDWQPYQ---DELVLVVTSTTGQGDLPDSIVPLFQALKDTAGYQ 82
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1431124523 166 TGLNYAVFGLGNKTYEHYNEIGVYVDNRLEQLGATRVVEL 205
Cdd:PRK08105   83 PNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGER 122
phenol_2-monooxygenase_like cd06211
Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use ...
457-584 1.44e-06

Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.


Pssm-ID: 99807  Cd Length: 238  Bit Score: 50.02  E-value: 1.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 457 RYYSISSSPKiypNSVHITAVVveyktptGRTNKGVTTTWLKEKHPTDPPCLV--P---IFVRKSQfrlptrpSTPIVMI 531
Cdd:cd06211    53 RAFSIASSPS---DAGEIELHI-------RLVPGGIATTYVHKQLKEGDELEIsgPygdFFVRDSD-------QRPIIFI 115
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1431124523 532 GPGTGLAPFRGFI---QERDFARKegkevgdTILYFGCRkSQEDFIYRDELEEYVK 584
Cdd:cd06211   116 AGGSGLSSPRSMIldlLERGDTRK-------ITLFFGAR-TRAELYYLDEFEALEK 163
PRK09267 PRK09267
flavodoxin FldA; Validated
84-202 1.94e-06

flavodoxin FldA; Validated


Pssm-ID: 236439 [Multi-domain]  Cd Length: 169  Bit Score: 48.29  E-value: 1.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523  84 VFYGSQTGTAEEFAGRLAKegiryKMKGMVADP---EECDMEELVRLKTIpnslaVFCLATYGEGDPTDNAMEFIDWLKn 160
Cdd:PRK09267    6 IFFGSDTGNTEDIAKMIQK-----KLGKDVADVvdiAKASKEDFEAYDLL-----ILGIPTWGYGELQCDWDDFLPELE- 74
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1431124523 161 gDGDLTGLNYAVFGLGNK-TYEHYneigvYVD------NRLEQLGATRV 202
Cdd:PRK09267   75 -EIDFSGKKVALFGLGDQeDYAEY-----FCDamgtlyDIVEPRGATIV 117
BenDO_FAD_NAD cd06209
Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons ...
519-630 2.85e-06

Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.


Pssm-ID: 99805 [Multi-domain]  Cd Length: 228  Bit Score: 48.74  E-value: 2.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 519 RLPTRPstpIVMIGPGTGLAPFRGFIQErdfARKEGKEVgDTILYFGCRKSQeDFIYRDELEEYVKS-GLLTLHTAFSRE 597
Cdd:cd06209    99 REVKRP---LLMLAGGTGLAPFLSMLDV---LAEDGSAH-PVHLVYGVTRDA-DLVELDRLEALAERlPGFSFRTVVADP 170
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1431124523 598 ---QAQKVYVTHLLENnkEELwrvigeqNG---HVYVCG 630
Cdd:cd06209   171 dswHPRKGYVTDHLEA--EDL-------NDgdvDVYLCG 200
sulfite_reductase_like cd06221
Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural ...
527-646 2.88e-06

Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.


Pssm-ID: 99817 [Multi-domain]  Cd Length: 253  Bit Score: 49.14  E-value: 2.88e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 527 PIVMIGPGTGLAPFRGFIQerdFARKEGKEVGDTILYFGCRKSqEDFIYRDELEEYVKSGLLTLHTAFSREQAQ---KV- 602
Cdd:cd06221   100 DLLLVAGGLGLAPLRSLIN---YILDNREDYGKVTLLYGARTP-EDLLFKEELKEWAKRSDVEVILTVDRAEEGwtgNVg 175
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1431124523 603 YVTHLLEnnkeelwRVIGEQ-NGHVYVCGDAKnMARDVHNILLKM 646
Cdd:cd06221   176 LVTDLLP-------ELTLDPdNTVAIVCGPPI-MMRFVAKELLKL 212
PRK06756 PRK06756
flavodoxin; Provisional
81-204 4.41e-06

flavodoxin; Provisional


Pssm-ID: 168663 [Multi-domain]  Cd Length: 148  Bit Score: 46.80  E-value: 4.41e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523  81 SLVVFYGSQTGTAEEFAGRLAkEGIR-----YKMKGMVADPEECDMEELVRLktipnslaVFCLATYGEGDPTDNAMEFI 155
Cdd:PRK06756    3 KLVMIFASMSGNTEEMADHIA-GVIReteneIEVIDIMDSPEASILEQYDGI--------ILGAYTWGDGDLPDDFLDFY 73
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1431124523 156 DWLKngDGDLTGLNYAVFGLGNKTYEHYneiGVYVDNRLEQL---GATRVVE 204
Cdd:PRK06756   74 DAMD--SIDLTGKKAAVFGSCDSAYPKY---GVAVDILIEKLqerGAAVVLE 120
FNR_iron_sulfur_binding_1 cd06215
Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding ...
449-661 6.55e-06

Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins which act as electron carriers in photosynthesis and ferredoxins which participate in redox chains from bacteria to mammals. Ferredoxin reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99811 [Multi-domain]  Cd Length: 231  Bit Score: 47.97  E-value: 6.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 449 EILPRLQCRYYSISSSPKIyPNSVHITAVVVEyktptgrtnKGVTTTWLKEKhptdppcLVP---IFVRK--SQFRLPTR 523
Cdd:cd06215    39 EIDGETVYRAYTLSSSPSR-PDSLSITVKRVP---------GGLVSNWLHDN-------LKVgdeLWASGpaGEFTLIDH 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 524 PSTPIVMIGPGTGLAPF----RGFIQERDFArkegkevgDtILYFGCRKSQEDFIYRDELEEYVKSglltlHTAFSreqa 599
Cdd:cd06215   102 PADKLLLLSAGSGITPMmsmaRWLLDTRPDA--------D-IVFIHSARSPADIIFADELEELARR-----HPNFR---- 163
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1431124523 600 qkvyVTHLLENNKEELW-----RV-----------IGEQngHVYVCGDAKNMArDVHNILLKMvkergnmsEVDAANY 661
Cdd:cd06215   164 ----LHLILEQPAPGAWggyrgRLnaellallvpdLKER--TVFVCGPAGFMK-AVKSLLAEL--------GFPMSRF 226
PRK07308 PRK07308
flavodoxin; Validated
84-215 8.02e-06

flavodoxin; Validated


Pssm-ID: 180922 [Multi-domain]  Cd Length: 146  Bit Score: 46.32  E-value: 8.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523  84 VFYGSQTGTAEEFAGRLAKegiRYKMKGMVADPEEC------DMEELvrlktipnSLAVFCLATYGEGDPTDNAMEFIDW 157
Cdd:PRK07308    6 IVYASMTGNTEEIADIVAD---KLRELGHDVDVDECttvdasDFEDA--------DIAIVATYTYGDGELPDEIVDFYED 74
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1431124523 158 LKngDGDLTGLNYAVFGLGNKTYEHYNEIGVYVDNRLEQLGATR---VVELGLGDDDANIE 215
Cdd:PRK07308   75 LA--DLDLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKgaeSVKVDLAAEDEDIE 133
FNR_like_3 cd06198
NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer ...
527-630 3.31e-05

NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.


Pssm-ID: 99795 [Multi-domain]  Cd Length: 216  Bit Score: 45.71  E-value: 3.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 527 PIVMIGPGTGLAPFRGFIQERdfarKEGKEVGDTILYFGCRKSqEDFIYRDELEEYVKSGLLTLHtafSREQAQKVYVTH 606
Cdd:cd06198    97 RQIWIAGGIGITPFLALLEAL----AARGDARPVTLFYCVRDP-EDAVFLDELRALAAAAGVVLH---VIDSPSDGRLTL 168
                          90       100
                  ....*....|....*....|....
gi 1431124523 607 LLENNKeelwRVIGEQNGHVYVCG 630
Cdd:cd06198   169 EQLVRA----LVPDLADADVWFCG 188
O2ase_reductase_like cd06187
The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial ...
457-599 3.47e-05

The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.


Pssm-ID: 99784 [Multi-domain]  Cd Length: 224  Bit Score: 45.66  E-value: 3.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 457 RYYSISSSPKiyPNSV---HITAVvveyktPTGRTnkgvtTTWLKEK-HPTDPpclvpIFVRKSQ--FRLPTRPSTPIVM 530
Cdd:cd06187    42 RAYSPANPPN--EDGEiefHVRAV------PGGRV-----SNALHDElKVGDR-----VRLSGPYgtFYLRRDHDRPVLC 103
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 531 IGPGTGLAPFRGFIQERdFARKEGKEVgdtILYFGCRkSQEDFIYRDELEEYVKS-GLLTLHTAFSREQA 599
Cdd:cd06187   104 IAGGTGLAPLRAIVEDA-LRRGEPRPV---HLFFGAR-TERDLYDLEGLLALAARhPWLRVVPVVSHEEG 168
T4MO_e_transfer_like cd06190
Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates ...
523-630 4.62e-05

Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.


Pssm-ID: 99787  Cd Length: 232  Bit Score: 45.32  E-value: 4.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 523 RPSTP--IVMIGPGTGLAPF----RGFIQERDFARKEGKevgdtiLYFGCRkSQEDFIYRDELEEYVKSGL-LTLHTAFS 595
Cdd:cd06190    93 RPDEDrdIVCIAGGSGLAPMlsilRGAARSPYLSDRPVD------LFYGGR-TPSDLCALDELSALVALGArLRVTPAVS 165
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1431124523 596 REQA--------QKVYVTHLLENNKEELWrvigeQNGHVYVCG 630
Cdd:cd06190   166 DAGSgsaagwdgPTGFVHEVVEATLGDRL-----AEFEFYFAG 203
flavohem_like_fad_nad_binding cd06184
FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain ...
518-646 1.57e-04

FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.


Pssm-ID: 99781  Cd Length: 247  Bit Score: 43.70  E-value: 1.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 518 FRLPTRPSTPIVMIGPGTGLAPFRGFIQErdfARKEGKEVgDTILYFGCRKSQED-FiyRDELEEYVKS-GLLTLHTAFS 595
Cdd:cd06184   106 FVLDEASDRPLVLISAGVGITPMLSMLEA---LAAEGPGR-PVTFIHAARNSAVHaF--RDELEELAARlPNLKLHVFYS 179
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1431124523 596 REQAQKVYVTHLLEN--NKEELWRVIGEQNGHVYVCGDAKNMaRDVHNILLKM 646
Cdd:cd06184   180 EPEAGDREEDYDHAGriDLALLRELLLPADADFYLCGPVPFM-QAVREGLKAL 231
FNR_iron_sulfur_binding cd06191
Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding ...
457-600 1.73e-04

Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).


Pssm-ID: 99788 [Multi-domain]  Cd Length: 231  Bit Score: 43.67  E-value: 1.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 457 RYYSISSSPKIYPNSVHITAVvveyktPTGRTNKgvtttWLKEK-HPTDPpclVPIFVRKSQFRLPTRPSTPIVMIGPGT 535
Cdd:cd06191    47 RCYSLCSSPAPDEISITVKRV------PGGRVSN-----YLREHiQPGMT---VEVMGPQGHFVYQPQPPGRYLLVAAGS 112
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1431124523 536 GLAPFRGFIQerdfARKEGKEVGDTILYFGCRKSQeDFIYRDELEEYV-KSGLLTLHTAFSREQAQ 600
Cdd:cd06191   113 GITPLMAMIR----ATLQTAPESDFTLIHSARTPA-DMIFAQELRELAdKPQRLRLLCIFTRETLD 173
oxygenase_e_transfer_subunit cd06213
The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial ...
517-630 3.03e-04

The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.


Pssm-ID: 99809  Cd Length: 227  Bit Score: 42.68  E-value: 3.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 517 QFRLptRPST-PIVMIGPGTGLAPFRGFIQErdfARKEGkEVGDTILYFGCRKsQEDFIYRDELEEYVKS--GLLTLHTA 593
Cdd:cd06213    93 DFWL--RPGDaPILCIAGGSGLAPILAILEQ---ARAAG-TKRDVTLLFGART-QRDLYALDEIAAIAARwrGRFRFIPV 165
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1431124523 594 FSREQA------QKVYVThllennkEELWRVIGEQnGHVYVCG 630
Cdd:cd06213   166 LSEEPAdsswkgARGLVT-------EHIAEVLLAA-TEAYLCG 200
NADH_quinone_reductase cd06188
Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) ...
527-655 3.32e-04

Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.


Pssm-ID: 99785 [Multi-domain]  Cd Length: 283  Bit Score: 43.06  E-value: 3.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 527 PIVMIGPGTGLAPFRGFIQERDFARKEGKEVgdtILYFGCRkSQEDFIYRDELEEYVKSGL-LTLHTAFSREQA------ 599
Cdd:cd06188   152 EMVFIGGGAGMAPLRSHIFHLLKTLKSKRKI---SFWYGAR-SLKELFYQEEFEALEKEFPnFKYHPVLSEPQPednwdg 227
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1431124523 600 -----QKVYVTHLLEN--NKEELwrvigeqngHVYVCGDAKnMARDVhnilLKMVKERGNMSE 655
Cdd:cd06188   228 ytgfiHQVLLENYLKKhpAPEDI---------EFYLCGPPP-MNSAV----IKMLDDLGVPRE 276
PRK06703 PRK06703
flavodoxin; Provisional
80-223 4.29e-04

flavodoxin; Provisional


Pssm-ID: 235854 [Multi-domain]  Cd Length: 151  Bit Score: 41.28  E-value: 4.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523  80 RSLVVfYGSQTGTAEEFAG----RLAKEGIRYKMKGMvadpEECDMEELVRLktipnSLAVFCLATYGEGDPTDNAMEFI 155
Cdd:PRK06703    3 KILIA-YASMSGNTEDIADlikvSLDAFDHEVVLQEM----DGMDAEELLAY-----DGIILGSYTWGDGDLPYEAEDFH 72
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1431124523 156 DWLKNGDgdLTGLNYAVFGLGNKTYEHYNEIGVYVDNRLEQLGATRV-----VELGLGDDD-----ANIEDDFITWKD 223
Cdd:PRK06703   73 EDLENID--LSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVqeglkIELAPETDEdvekcSNFAIAFAEKFA 148
DHOD_e_trans cd06218
FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. ...
518-630 1.03e-03

FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.


Pssm-ID: 99814 [Multi-domain]  Cd Length: 246  Bit Score: 41.38  E-value: 1.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 518 FRLPTrPSTPIVMIGPGTGLAPFRGFIQErdfARKEGKEVgdtILYFGCRkSQEDFIYRDELEEYVKSglltlhTAFSRE 597
Cdd:cd06218    92 FDLPD-DDGKVLLVGGGIGIAPLLFLAKQ---LAERGIKV---TVLLGFR-SADDLFLVEEFEALGAE------VYVATD 157
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1431124523 598 QA---QKVYVTHLLENNKEELWRVIgeqnghVYVCG 630
Cdd:cd06218   158 DGsagTKGFVTDLLKELLAEARPDV------VYACG 187
FNR_N-term_Iron_sulfur_binding cd06194
Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding ...
518-632 1.08e-03

Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99791 [Multi-domain]  Cd Length: 222  Bit Score: 41.10  E-value: 1.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 518 FRLPTRPSTPIVMIGPGTGLAPFRGFIQErdfARKEGKEvGDTILYFGCRKSQeDFIYRDELEeyvksglltlhtAFSRE 597
Cdd:cd06194    90 FYRPEYGEGPLLLVGAGTGLAPLWGIARA---ALRQGHQ-GEIRLVHGARDPD-DLYLHPALL------------WLARE 152
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1431124523 598 QAQKVYVTHLLENNKEELWRVIGEQNGH---------VYVCGDA 632
Cdd:cd06194   153 HPNFRYIPCVSEGSQGDPRVRAGRIAAHlppltrddvVYLCGAP 196
cyt_b5_reduct_like cd06183
Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as ...
528-646 7.25e-03

Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.


Pssm-ID: 99780 [Multi-domain]  Cd Length: 234  Bit Score: 38.70  E-value: 7.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431124523 528 IVMIGPGTGLAPFRGFIQERDFARKEGKEVgdTILYfgCRKSQEDFIYRDELEEYVK--SGLLTLHTAFSREQA-QKVYV 604
Cdd:cd06183   107 IGMIAGGTGITPMLQLIRAILKDPEDKTKI--SLLY--ANRTEEDILLREELDELAKkhPDRFKVHYVLSRPPEgWKGGV 182
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1431124523 605 THLlenNKEELWRVIGEQNG---HVYVCGDAKNMARDVHNILLKM 646
Cdd:cd06183   183 GFI---TKEMIKEHLPPPPSedtLVLVCGPPPMIEGAVKGLLKEL 224
PRK07609 PRK07609
CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
524-581 9.73e-03

CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated


Pssm-ID: 181058 [Multi-domain]  Cd Length: 339  Bit Score: 38.70  E-value: 9.73e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1431124523 524 PSTPIVMIGPGTGLAPFRGFI---QERDFARKegkevgdTILYFGCRKSqEDFiYRDELEE 581
Cdd:PRK07609  203 SDKPIVLLASGTGFAPIKSIVehlRAKGIQRP-------VTLYWGARRP-EDL-YLSALAE 254
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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