NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1386635388|ref|NP_001349837|]
View 

large ribosomal subunit protein mL55 isoform 1 [Mus musculus]

Protein Classification

Mitoc_L55 domain-containing protein( domain architecture ID 10561101)

Mitoc_L55 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Mitoc_L55 pfam09776
Mitochondrial ribosomal protein L55; Members of this family are involved in mitochondrial ...
 17-131 2.86e-70

Mitochondrial ribosomal protein L55; Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.


:

Pssm-ID: 462893  Cd Length: 115  Bit Score: 206.52  E-value: 2.86e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386635388  17 LRHCGVRAALPTPRHLHTSPWRADCSRASLTRLRRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPLDLDALSPEERR 96
Cdd:pfam09776   1 LRQSGVRAALPSSCCLHTSSWRADSNRASLTRIHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPVDLDTLSPEERR 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1386635388  97 ARFRKREAQLQQKREEEPEVVDSFDTERYKQFWTK 131
Cdd:pfam09776  81 ARLRKREAQLQEKKEEEPELEDDFDVERYKKFWTK 115
 
Name Accession Description Interval E-value
Mitoc_L55 pfam09776
Mitochondrial ribosomal protein L55; Members of this family are involved in mitochondrial ...
 17-131 2.86e-70

Mitochondrial ribosomal protein L55; Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.


Pssm-ID: 462893  Cd Length: 115  Bit Score: 206.52  E-value: 2.86e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386635388  17 LRHCGVRAALPTPRHLHTSPWRADCSRASLTRLRRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPLDLDALSPEERR 96
Cdd:pfam09776   1 LRQSGVRAALPSSCCLHTSSWRADSNRASLTRIHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPVDLDTLSPEERR 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1386635388  97 ARFRKREAQLQQKREEEPEVVDSFDTERYKQFWTK 131
Cdd:pfam09776  81 ARLRKREAQLQEKKEEEPELEDDFDVERYKKFWTK 115
 
Name Accession Description Interval E-value
Mitoc_L55 pfam09776
Mitochondrial ribosomal protein L55; Members of this family are involved in mitochondrial ...
 17-131 2.86e-70

Mitochondrial ribosomal protein L55; Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.


Pssm-ID: 462893  Cd Length: 115  Bit Score: 206.52  E-value: 2.86e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1386635388  17 LRHCGVRAALPTPRHLHTSPWRADCSRASLTRLRRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPLDLDALSPEERR 96
Cdd:pfam09776   1 LRQSGVRAALPSSCCLHTSSWRADSNRASLTRIHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPVDLDTLSPEERR 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1386635388  97 ARFRKREAQLQQKREEEPEVVDSFDTERYKQFWTK 131
Cdd:pfam09776  81 ARLRKREAQLQEKKEEEPELEDDFDVERYKKFWTK 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH