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Conserved domains on  [gi|1676318480|ref|NP_001349626|]
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golgin subfamily A member 2 isoform e [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GOLGA2L5 pfam15070
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ...
337-861 0e+00

Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.


:

Pssm-ID: 464485 [Multi-domain]  Cd Length: 521  Bit Score: 698.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 337 QLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPP--AGP 414
Cdd:pfam15070   1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAVPPAEEEQppAGP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 415 SEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRA 494
Cdd:pfam15070  81 SEEEQRLQEEAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILEDMQSDRATISRA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 495 LSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSH 574
Cdd:pfam15070 161 LSQNRELKEQLAELQNGFVKLTNENMELTSALQSEQHVKKELAKKLGQLQEELGELKETLELKSQEAQSLQEQRDQYLAH 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 575 LQQYAAAYQqhlaayeQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQQLQAQLSL 654
Cdd:pfam15070 241 LQQYVAAYQ-------QLASEKEELHKQYLLQTQLMDRLQHEEVQGKVAAEMARQELQETQERLEALTQQNQQLQAQLSL 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 655 LVLPGE-GDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLE 733
Cdd:pfam15070 314 LANPGEgDGLESEEEEEEAPRPSLSIPEDFESREAMVAFFNSALAQAEEERAELRRQLKEQKRRCRRLAQQAAPAQEEPE 393
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 734 KEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKAR 813
Cdd:pfam15070 394 HEAHAPGTGGDSVPVEVHQALQVAMEKLQSRFTELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAILKQR 473
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*...
gi 1676318480 814 HLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNERNEWQGKFLAVSQ 861
Cdd:pfam15070 474 HREKEEYISRLAQDKEEMKVKLLELQELVLRLVGERNEWYGKYLAAAQ 521
GM130_C pfam19046
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ...
906-951 7.19e-27

GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.


:

Pssm-ID: 465957  Cd Length: 46  Bit Score: 103.62  E-value: 7.19e-27
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1676318480 906 APHENPTAQQIMQLLREIQNPRERPGLGSNPCIPFFYRADENDEVK 951
Cdd:pfam19046   1 SPPENPTAQQIMQLLPEIQNPQEHPGLGSNPCIPFFYRADENDEVK 46
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
104-435 1.76e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 65.08  E-value: 1.76e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  104 TSSNMKELENRYQELAVALDssyvtnkQLSSTIEELKQQNQDTLDQLEKEKKDYQQKlAKEQGSLREQLQVHIQTIGILV 183
Cdd:TIGR02168  675 RRREIEELEEKIEELEEKIA-------ELEKALAELRKELEELEEELEQLRKELEEL-SRQISALRKDLARLEAEVEQLE 746
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  184 SEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSN 263
Cdd:TIGR02168  747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  264 EDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSsqssaaggnEQLQHAMEERAQLETHVSQLMESLK 343
Cdd:TIGR02168  827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE---------SELEALLNERASLEEALALLRSELE 897
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  344 QLQVERDQYAENLKGEsamwQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAAlRSQMEEPPPPEPPAGPSEAEEQLQG 423
Cdd:TIGR02168  898 ELSEELRELESKRSEL----RRELEELREKLAQLELRLEGLEVRIDNLQERLSE-EYSLTLEEAEALENKIEDDEEEARR 972
                          330
                   ....*....|..
gi 1676318480  424 EVEQLHKELERL 435
Cdd:TIGR02168  973 RLKRLENKIKEL 984
 
Name Accession Description Interval E-value
GOLGA2L5 pfam15070
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ...
337-861 0e+00

Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.


Pssm-ID: 464485 [Multi-domain]  Cd Length: 521  Bit Score: 698.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 337 QLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPP--AGP 414
Cdd:pfam15070   1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAVPPAEEEQppAGP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 415 SEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRA 494
Cdd:pfam15070  81 SEEEQRLQEEAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILEDMQSDRATISRA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 495 LSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSH 574
Cdd:pfam15070 161 LSQNRELKEQLAELQNGFVKLTNENMELTSALQSEQHVKKELAKKLGQLQEELGELKETLELKSQEAQSLQEQRDQYLAH 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 575 LQQYAAAYQqhlaayeQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQQLQAQLSL 654
Cdd:pfam15070 241 LQQYVAAYQ-------QLASEKEELHKQYLLQTQLMDRLQHEEVQGKVAAEMARQELQETQERLEALTQQNQQLQAQLSL 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 655 LVLPGE-GDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLE 733
Cdd:pfam15070 314 LANPGEgDGLESEEEEEEAPRPSLSIPEDFESREAMVAFFNSALAQAEEERAELRRQLKEQKRRCRRLAQQAAPAQEEPE 393
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 734 KEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKAR 813
Cdd:pfam15070 394 HEAHAPGTGGDSVPVEVHQALQVAMEKLQSRFTELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAILKQR 473
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*...
gi 1676318480 814 HLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNERNEWQGKFLAVSQ 861
Cdd:pfam15070 474 HREKEEYISRLAQDKEEMKVKLLELQELVLRLVGERNEWYGKYLAAAQ 521
GM130_C pfam19046
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ...
906-951 7.19e-27

GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.


Pssm-ID: 465957  Cd Length: 46  Bit Score: 103.62  E-value: 7.19e-27
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1676318480 906 APHENPTAQQIMQLLREIQNPRERPGLGSNPCIPFFYRADENDEVK 951
Cdd:pfam19046   1 SPPENPTAQQIMQLLPEIQNPQEHPGLGSNPCIPFFYRADENDEVK 46
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
221-851 3.09e-19

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 93.46  E-value: 3.09e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 221 VGELERTLSTVSTQQKQADRYnKDLTKERDALKLELYKNSKsnEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEm 300
Cdd:COG1196   195 LGELERQLEPLERQAEKAERY-RELKEELKELEAELLLLKL--RELEAELEELEAELEELEAELEELEAELAELEAELE- 270
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 301 selllqqfssqssaaggnEQLQHAMEERAQLETHVSQLMESLKQLqverdqyaENLKGESAMWQQRVQQMAEQVHTLKEE 380
Cdd:COG1196   271 ------------------ELRLELEELELELEEAQAEEYELLAEL--------ARLEQDIARLEERRRELEERLEELEEE 324
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 381 KEHRERQVQELETSLAALRSQMEEPPPPEPpagpsEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRL 460
Cdd:COG1196   325 LAELEEELEELEEELEELEEELEEAEEELE-----EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA 399
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 461 LELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKL 540
Cdd:COG1196   400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 541 GELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQG 620
Cdd:COG1196   480 AELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVA 559
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 621 KMAAELARQELQEAQERLKATSQENQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARA 700
Cdd:COG1196   560 AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 701 EEEQARLRVQLkeqkarcrslshLAAPVQSKLEKEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVE 780
Cdd:COG1196   640 VTLAGRLREVT------------LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
                         570       580       590       600       610       620       630
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1676318480 781 ELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNERNE 851
Cdd:COG1196   708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
110-644 2.14e-14

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 77.79  E-value: 2.14e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  110 ELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQkLAKEQGSLREQLQVHIQTIGILVSEKAEL 189
Cdd:TIGR02168  299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE-LKEELESLEAELEELEAELEELESRLEEL 377
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  190 QTALAHTQQAARQKAGESEDLASRLQSSRQRV----GELERTLSTVSTQQKQADRYNKDLTKER-DALKLELYKNSKSNE 264
Cdd:TIGR02168  378 EEQLETLRSKVAQLELQIASLNNEIERLEARLerleDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELE 457
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  265 DLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFS-----------SQSSAAGGNEQLQHAMEERAQLET 333
Cdd:TIGR02168  458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvkallkNQSGLSGILGVLSELISVDEGYEA 537
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  334 HVS-------------------QLMESLKQ----------LQVERDQYAENLKGESAMWQQRVQQMAEQVHT-------- 376
Cdd:TIGR02168  538 AIEaalggrlqavvvenlnaakKAIAFLKQnelgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKfdpklrka 617
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  377 -------------------LKEEKEHRERQV---------------QELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQ 422
Cdd:TIGR02168  618 lsyllggvlvvddldnaleLAKKLRPGYRIVtldgdlvrpggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAELE 697
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  423 GEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNR--- 499
Cdd:TIGR02168  698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEeel 777
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  500 -ELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQY 578
Cdd:TIGR02168  778 aEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857
                          570       580       590       600       610       620
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1676318480  579 AaayqqhlAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQE 644
Cdd:TIGR02168  858 A-------AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRE 916
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
104-435 1.76e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 65.08  E-value: 1.76e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  104 TSSNMKELENRYQELAVALDssyvtnkQLSSTIEELKQQNQDTLDQLEKEKKDYQQKlAKEQGSLREQLQVHIQTIGILV 183
Cdd:TIGR02168  675 RRREIEELEEKIEELEEKIA-------ELEKALAELRKELEELEEELEQLRKELEEL-SRQISALRKDLARLEAEVEQLE 746
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  184 SEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSN 263
Cdd:TIGR02168  747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  264 EDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSsqssaaggnEQLQHAMEERAQLETHVSQLMESLK 343
Cdd:TIGR02168  827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE---------SELEALLNERASLEEALALLRSELE 897
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  344 QLQVERDQYAENLKGEsamwQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAAlRSQMEEPPPPEPPAGPSEAEEQLQG 423
Cdd:TIGR02168  898 ELSEELRELESKRSEL----RRELEELREKLAQLELRLEGLEVRIDNLQERLSE-EYSLTLEEAEALENKIEDDEEEARR 972
                          330
                   ....*....|..
gi 1676318480  424 EVEQLHKELERL 435
Cdd:TIGR02168  973 RLKRLENKIKEL 984
mukB PRK04863
chromosome partition protein MukB;
264-614 2.45e-08

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 58.43  E-value: 2.45e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  264 EDLRQQNSELEEKLrvlvaekAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLK 343
Cdd:PRK04863   789 EQLRAEREELAERY-------ATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQ 861
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  344 QLQVERDQYAENLKGESAM-----------WQQRVQQMAEQVHTLKEEKEHRERQ---VQELETSLAALRSqmeeppppe 409
Cdd:PRK04863   862 QQRSQLEQAKEGLSALNRLlprlnlladetLADRVEEIREQLDEAEEAKRFVQQHgnaLAQLEPIVSVLQS--------- 932
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  410 ppagPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQrwseqaEERKQILESMQSDRt 489
Cdd:PRK04863   933 ----DPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLN------EKLRQRLEQAEQER- 1001
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  490 tisralsqnRELKEQLAELQNGFvrltNENMEITSALQSEQHVKKELarkLGELQERLGELkeTVELKSQEAQGLQEQRD 569
Cdd:PRK04863  1002 ---------TRAREQLRQAQAQL----AQYNQVLASLKSSYDAKRQM---LQELKQELQDL--GVPADSGAEERARARRD 1063
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*
gi 1676318480  570 QClshlqqyaaaYQQHLAAYEQltseKEAIHKQLLLQTQLMDQLQ 614
Cdd:PRK04863  1064 EL----------HARLSANRSR----RNQLEKQLTFCEAEMDNLT 1094
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
78-555 1.06e-06

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 52.73  E-value: 1.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  78 ESLRQLSQQLNGLVSESTSYINGEGLTSSNMK-------ELENRYQELAVALDSSYVTNKQLSSTIEELKQqNQDTLDQL 150
Cdd:PRK02224  279 EEVRDLRERLEELEEERDDLLAEAGLDDADAEavearreELEDRDEELRDRLEECRVAAQAHNEEAESLRE-DADDLEER 357
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 151 EKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLST 230
Cdd:PRK02224  358 AEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRT 437
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 231 VSTQQKQADRYnkdltkeRDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLlqqfss 310
Cdd:PRK02224  438 ARERVEEAEAL-------LEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDL------ 504
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 311 qSSAAGGNEQLQHAMEERAQL-ETHVSQLMESLKQLQVERDQyAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQ 389
Cdd:PRK02224  505 -VEAEDRIERLEERREDLEELiAERRETIEEKRERAEELRER-AAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA 582
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 390 ELETSLAALrsqmeeppppeppagpsEAEEQLQGEVEQLHKELERLTGQLraqvqdnESLSHLNREQEGRLLEL-EREAQ 468
Cdd:PRK02224  583 ELKERIESL-----------------ERIRTLLAAIADAEDEIERLREKR-------EALAELNDERRERLAEKrERKRE 638
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 469 RWSEQAEERkqiLESMQSDRTTISRALSQN----RELKEQLAELQNgfvrltnenmEITSalqseqhVKKELARkLGELQ 544
Cdd:PRK02224  639 LEAEFDEAR---IEEAREDKERAEEYLEQVeeklDELREERDDLQA----------EIGA-------VENELEE-LEELR 697
                         490
                  ....*....|.
gi 1676318480 545 ERLGELKETVE 555
Cdd:PRK02224  698 ERREALENRVE 708
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
210-434 1.26e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 48.61  E-value: 1.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 210 LASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQL 289
Cdd:COG4942    11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 290 GVEELQKKLE-----MSELL--LQQFSSQSS-----AAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLK 357
Cdd:COG4942    91 EIAELRAELEaqkeeLAELLraLYRLGRQPPlalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676318480 358 GESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPppeppagpsEAEEQLQGEVEQLHKELER 434
Cdd:COG4942   171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ---------QEAEELEALIARLEAEAAA 238
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
3-644 1.29e-05

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 49.20  E-value: 1.29e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480    3 EETRQSKLAAAKKKLREYQQKnspgvpagakkkkkIKNGHSPERPTASDCQSPENSHDAGNCSNLMEETKTFSSTESLRQ 82
Cdd:pfam02463  196 KLQELKLKEQAKKALEYYQLK--------------EKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIE 261
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480   83 LSQQLNGLVSESTSYINGEgltSSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLA 162
Cdd:pfam02463  262 KEEEKLAQVLKENKEEEKE---KKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIE 338
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  163 KEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYN 242
Cdd:pfam02463  339 ELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLE 418
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  243 KDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFS----SQSSAAGGN 318
Cdd:pfam02463  419 DLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQlellLSRQKLEER 498
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  319 EQLQHAMEERAQLETHVSQLMESLKQLQVERDQ--YAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLA 396
Cdd:pfam02463  499 SQKESKARSGLKVLLALIKDGVGGRIISAHGRLgdLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGAR 578
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  397 ALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEReaqrwsEQAEE 476
Cdd:pfam02463  579 KLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESG------LRKGV 652
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  477 RKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVEL 556
Cdd:pfam02463  653 SLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQD 732
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  557 KSQEAQGLQEQR-------DQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQ 629
Cdd:pfam02463  733 KINEELKLLKQKideeeeeEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKE 812
                          650
                   ....*....|....*
gi 1676318480  630 ELQEAQERLKATSQE 644
Cdd:pfam02463  813 EAELLEEEQLLIEQE 827
 
Name Accession Description Interval E-value
GOLGA2L5 pfam15070
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ...
337-861 0e+00

Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.


Pssm-ID: 464485 [Multi-domain]  Cd Length: 521  Bit Score: 698.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 337 QLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPP--AGP 414
Cdd:pfam15070   1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAVPPAEEEQppAGP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 415 SEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRA 494
Cdd:pfam15070  81 SEEEQRLQEEAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILEDMQSDRATISRA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 495 LSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSH 574
Cdd:pfam15070 161 LSQNRELKEQLAELQNGFVKLTNENMELTSALQSEQHVKKELAKKLGQLQEELGELKETLELKSQEAQSLQEQRDQYLAH 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 575 LQQYAAAYQqhlaayeQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQQLQAQLSL 654
Cdd:pfam15070 241 LQQYVAAYQ-------QLASEKEELHKQYLLQTQLMDRLQHEEVQGKVAAEMARQELQETQERLEALTQQNQQLQAQLSL 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 655 LVLPGE-GDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLE 733
Cdd:pfam15070 314 LANPGEgDGLESEEEEEEAPRPSLSIPEDFESREAMVAFFNSALAQAEEERAELRRQLKEQKRRCRRLAQQAAPAQEEPE 393
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 734 KEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKAR 813
Cdd:pfam15070 394 HEAHAPGTGGDSVPVEVHQALQVAMEKLQSRFTELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAILKQR 473
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*...
gi 1676318480 814 HLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNERNEWQGKFLAVSQ 861
Cdd:pfam15070 474 HREKEEYISRLAQDKEEMKVKLLELQELVLRLVGERNEWYGKYLAAAQ 521
GM130_C pfam19046
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ...
906-951 7.19e-27

GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.


Pssm-ID: 465957  Cd Length: 46  Bit Score: 103.62  E-value: 7.19e-27
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1676318480 906 APHENPTAQQIMQLLREIQNPRERPGLGSNPCIPFFYRADENDEVK 951
Cdd:pfam19046   1 SPPENPTAQQIMQLLPEIQNPQEHPGLGSNPCIPFFYRADENDEVK 46
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
221-851 3.09e-19

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 93.46  E-value: 3.09e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 221 VGELERTLSTVSTQQKQADRYnKDLTKERDALKLELYKNSKsnEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEm 300
Cdd:COG1196   195 LGELERQLEPLERQAEKAERY-RELKEELKELEAELLLLKL--RELEAELEELEAELEELEAELEELEAELAELEAELE- 270
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 301 selllqqfssqssaaggnEQLQHAMEERAQLETHVSQLMESLKQLqverdqyaENLKGESAMWQQRVQQMAEQVHTLKEE 380
Cdd:COG1196   271 ------------------ELRLELEELELELEEAQAEEYELLAEL--------ARLEQDIARLEERRRELEERLEELEEE 324
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 381 KEHRERQVQELETSLAALRSQMEEPPPPEPpagpsEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRL 460
Cdd:COG1196   325 LAELEEELEELEEELEELEEELEEAEEELE-----EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA 399
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 461 LELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKL 540
Cdd:COG1196   400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 541 GELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQG 620
Cdd:COG1196   480 AELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVA 559
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 621 KMAAELARQELQEAQERLKATSQENQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARA 700
Cdd:COG1196   560 AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 701 EEEQARLRVQLkeqkarcrslshLAAPVQSKLEKEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVE 780
Cdd:COG1196   640 VTLAGRLREVT------------LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
                         570       580       590       600       610       620       630
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1676318480 781 ELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNERNE 851
Cdd:COG1196   708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
110-644 2.14e-14

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 77.79  E-value: 2.14e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  110 ELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQkLAKEQGSLREQLQVHIQTIGILVSEKAEL 189
Cdd:TIGR02168  299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE-LKEELESLEAELEELEAELEELESRLEEL 377
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  190 QTALAHTQQAARQKAGESEDLASRLQSSRQRV----GELERTLSTVSTQQKQADRYNKDLTKER-DALKLELYKNSKSNE 264
Cdd:TIGR02168  378 EEQLETLRSKVAQLELQIASLNNEIERLEARLerleDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELE 457
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  265 DLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFS-----------SQSSAAGGNEQLQHAMEERAQLET 333
Cdd:TIGR02168  458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvkallkNQSGLSGILGVLSELISVDEGYEA 537
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  334 HVS-------------------QLMESLKQ----------LQVERDQYAENLKGESAMWQQRVQQMAEQVHT-------- 376
Cdd:TIGR02168  538 AIEaalggrlqavvvenlnaakKAIAFLKQnelgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKfdpklrka 617
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  377 -------------------LKEEKEHRERQV---------------QELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQ 422
Cdd:TIGR02168  618 lsyllggvlvvddldnaleLAKKLRPGYRIVtldgdlvrpggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAELE 697
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  423 GEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNR--- 499
Cdd:TIGR02168  698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEeel 777
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  500 -ELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQY 578
Cdd:TIGR02168  778 aEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857
                          570       580       590       600       610       620
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1676318480  579 AaayqqhlAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQE 644
Cdd:TIGR02168  858 A-------AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRE 916
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
130-644 4.35e-14

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 76.90  E-value: 4.35e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 130 KQLSSTIEELKQQNQDTLDQLEKEKKDYQQkLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESED 209
Cdd:COG1196   242 EELEAELEELEAELEELEAELAELEAELEE-LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE 320
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 210 LASRLQSSRQRVGELERTLSTVSTQQKQADrynkdltKERDALKLELyknsksnEDLRQQNSELEEKLRVLVAE-KAAAQ 288
Cdd:COG1196   321 LEEELAELEEELEELEEELEELEEELEEAE-------EELEEAEAEL-------AEAEEALLEAEAELAEAEEElEELAE 386
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 289 LGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQ 368
Cdd:COG1196   387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 369 QMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHkeLERLTGQLRAQVQDNES 448
Cdd:COG1196   467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA--VLIGVEAAYEAALEAAL 544
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 449 LSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRE-------LKEQLAELQNGFVRLTNENME 521
Cdd:COG1196   545 AAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAigaavdlVASDLREADARYYVLGDTLLG 624
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 522 ITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHK 601
Cdd:COG1196   625 RTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEE 704
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|...
gi 1676318480 602 QLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQE 644
Cdd:COG1196   705 EERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEEL 747
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
221-851 1.07e-13

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 75.86  E-value: 1.07e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  221 VGELERTLSTVSTQQKQADRYnKDLTKERDALKLELYKNS-----KSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQ 295
Cdd:TIGR02168  195 LNELERQLKSLERQAEKAERY-KELKAELRELELALLVLRleelrEELEELQEELKEAEEELEELTAELQELEEKLEELR 273
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  296 KKL-EMSELLLQQ----FSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLkgesAMWQQRVQQM 370
Cdd:TIGR02168  274 LEVsELEEEIEELqkelYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL----AELEEKLEEL 349
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  371 AEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEppAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESL- 449
Cdd:TIGR02168  350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKV--AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELl 427
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  450 ----SHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSA 525
Cdd:TIGR02168  428 kkleEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG 507
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  526 LQSEQHVKKELARKLGELQER--------------LGELKETVELKSQEAQglqeqrDQCLSHLQQYAAAYQQHLAAYEQ 591
Cdd:TIGR02168  508 VKALLKNQSGLSGILGVLSELisvdegyeaaieaaLGGRLQAVVVENLNAA------KKAIAFLKQNELGRVTFLPLDSI 581
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  592 LTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQ----------ELQEAQERLK---------------------- 639
Cdd:TIGR02168  582 KGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvdDLDNALELAKklrpgyrivtldgdlvrpggvi 661
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  640 --ATSQENQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKAR 717
Cdd:TIGR02168  662 tgGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  718 CRSLSHLAAPVQSKLEkEAVVPRNVDDSASEESNQALHVA---MEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETD 794
Cdd:TIGR02168  742 VEQLEERIAQLSKELT-ELEAEIEELEERLEEAEEELAEAeaeIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1676318480  795 TIGEYIALYQNQRA-------VLKARHLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNERNE 851
Cdd:TIGR02168  821 NLRERLESLERRIAaterrleDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS 884
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
264-562 3.06e-13

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 74.32  E-value: 3.06e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  264 EDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLK 343
Cdd:TIGR02168  680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL--RKDLARLEAEVEQLEERIAQLSKELT 757
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  344 QLQVERDQYAENLKGESAMWQQRVQQMAEqvhtLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQG 423
Cdd:TIGR02168  758 ELEAEIEELEERLEEAEEELAEAEAEIEE----LEAQIEQLKEELKALREALDELRAELTLLNEEAANL--RERLESLER 831
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  424 EVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQ----AEERKQILESMQSDRTTISRALSQNR 499
Cdd:TIGR02168  832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNEraslEEALALLRSELEELSEELRELESKRS 911
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1676318480  500 ELKEQLAELQNgfvRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQ 562
Cdd:TIGR02168  912 ELRRELEELRE---KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR 971
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
223-581 2.90e-11

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 67.79  E-value: 2.90e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  223 ELERTLSTVSTQQKQADRYNKDLTKERDalkLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSE 302
Cdd:TIGR02169  195 EKRQQLERLRREREKAERYQALLKEKRE---YEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIE 271
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  303 LLLQQFSSQSSAAGGNEQLQ--------HAMEERAQ-----LETHVSQLMESLKQLQVERDQY---AENLKGESAMWQQR 366
Cdd:TIGR02169  272 QLLEELNKKIKDLGEEEQLRvkekigelEAEIASLErsiaeKERELEDAEERLAKLEAEIDKLlaeIEELEREIEEERKR 351
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  367 VQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPppeppagpsEAEEQLQGEVEQLHKELERLTGQLRAQVQDN 446
Cdd:TIGR02169  352 RDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR---------EKLEKLKREINELKRELDRLQEELQRLSEEL 422
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  447 ESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQnreLKEQLAELQNgfvrltnenmEITSAl 526
Cdd:TIGR02169  423 ADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD---LKEEYDRVEK----------ELSKL- 488
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1676318480  527 qseqhvKKELARKLGELQ---ERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAA 581
Cdd:TIGR02169  489 ------QRELAEAEAQARaseERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATA 540
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
110-840 3.25e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 67.77  E-value: 3.25e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  110 ELENRYQELAVALDssyvtNKQLSSTIEELKQQNqDTLDQLEKEKKDYQQKLAKEQgslrEQLQVHIQTIGILVSEKAEL 189
Cdd:TIGR02168  210 EKAERYKELKAELR-----ELELALLVLRLEELR-EELEELQEELKEAEEELEELT----AELQELEEKLEELRLEVSEL 279
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  190 QTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQ 269
Cdd:TIGR02168  280 EEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE 359
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  270 NSELEEKLRVLVAEKAAAQLGVEELQKKLemSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVER 349
Cdd:TIGR02168  360 LEELEAELEELESRLEELEEQLETLRSKV--AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE 437
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  350 DQYA-ENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPA-GPSEAEEQLQGEVEQ 427
Cdd:TIGR02168  438 LQAElEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLeGFSEGVKALLKNQSG 517
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  428 LHKELERLTGQLRAQ-------------------VQDNES----LSHLNREQEGRLLELEREAQRWSEQAEERKQILESM 484
Cdd:TIGR02168  518 LSGILGVLSELISVDegyeaaieaalggrlqavvVENLNAakkaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNI 597
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  485 QSDRTTISRALSQNRELKEQLAELQNGFV------------RLTNENMEI--------------TSALQSEQHVKKELAR 538
Cdd:TIGR02168  598 EGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddldnalelaKKLRPGYRIvtldgdlvrpggviTGGSAKTNSSILERRR 677
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  539 KLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEV 618
Cdd:TIGR02168  678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  619 QGKMAAELARQELQEAQERLKATSQENQQLQAQLSLLVlpgegdvdqeeedeevpqsslaipEDLDSREAMVAFFNAAIA 698
Cdd:TIGR02168  758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK------------------------EELKALREALDELRAELT 813
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  699 RAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLEKEavvprNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKER 778
Cdd:TIGR02168  814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL-----SEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
                          730       740       750       760       770       780
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1676318480  779 VEELEHCCIQLSGETDTIGEyialyqnQRAVLKARHLEKEEYISRLAQDKEEMKVKLLELQE 840
Cdd:TIGR02168  889 LALLRSELEELSEELRELES-------KRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
77-638 3.40e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 67.27  E-value: 3.40e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  77 TESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELENRYQELAVALDssyvtnkQLSSTIEELKQQNQDTLDQLEKEKKD 156
Cdd:COG1196   280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA-------ELEEELEELEEELEELEEELEEAEEE 352
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 157 YQQKLAKEQGSLREQLQvhiqtigiLVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQK 236
Cdd:COG1196   353 LEEAEAELAEAEEALLE--------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 237 QADRYNKDLTKERDALKLELyknsksnedlrqqnSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAG 316
Cdd:COG1196   425 ELEEALAELEEEEEEEEEAL--------------EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 317 GNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLA 396
Cdd:COG1196   491 ARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK 570
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 397 ALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLshlnrEQEGRLLELEREAQRWSEQAEE 476
Cdd:COG1196   571 AGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLL-----GRTLVAARLEAALRRAVTLAGR 645
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 477 RKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVEL 556
Cdd:COG1196   646 LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA 725
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 557 KSQEAQGLQEQRDQclsHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLqheevqGK--MAAElarQELQEA 634
Cdd:COG1196   726 LEEQLEAEREELLE---ELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL------GPvnLLAI---EEYEEL 793

                  ....
gi 1676318480 635 QERL 638
Cdd:COG1196   794 EERY 797
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
104-435 1.76e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 65.08  E-value: 1.76e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  104 TSSNMKELENRYQELAVALDssyvtnkQLSSTIEELKQQNQDTLDQLEKEKKDYQQKlAKEQGSLREQLQVHIQTIGILV 183
Cdd:TIGR02168  675 RRREIEELEEKIEELEEKIA-------ELEKALAELRKELEELEEELEQLRKELEEL-SRQISALRKDLARLEAEVEQLE 746
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  184 SEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSN 263
Cdd:TIGR02168  747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  264 EDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSsqssaaggnEQLQHAMEERAQLETHVSQLMESLK 343
Cdd:TIGR02168  827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE---------SELEALLNERASLEEALALLRSELE 897
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  344 QLQVERDQYAENLKGEsamwQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAAlRSQMEEPPPPEPPAGPSEAEEQLQG 423
Cdd:TIGR02168  898 ELSEELRELESKRSEL----RRELEELREKLAQLELRLEGLEVRIDNLQERLSE-EYSLTLEEAEALENKIEDDEEEARR 972
                          330
                   ....*....|..
gi 1676318480  424 EVEQLHKELERL 435
Cdd:TIGR02168  973 RLKRLENKIKEL 984
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
347-638 5.32e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 63.54  E-value: 5.32e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  347 VERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQGEVE 426
Cdd:TIGR02168  673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL--EAEVEQLEERIA 750
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  427 QLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQla 506
Cdd:TIGR02168  751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES-- 828
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  507 eLQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRdqclshlqqyaaayQQHL 586
Cdd:TIGR02168  829 -LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL--------------ALLR 893
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1676318480  587 AAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERL 638
Cdd:TIGR02168  894 SELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
128-483 2.12e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 61.61  E-value: 2.12e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  128 TNKQLSSTIEELKQQnQDTLDQLEKEKKDY--QQKLAKEQGSLREQLQvHIQtIGILVSEKAELQTALAHTQQAARQKAG 205
Cdd:TIGR02168  177 TERKLERTRENLDRL-EDILNELERQLKSLerQAEKAERYKELKAELR-ELE-LALLVLRLEELREELEELQEELKEAEE 253
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  206 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKA 285
Cdd:TIGR02168  254 ELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  286 AAQLGVEELQKKLEmselllqqfssqssaaggneQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQ 365
Cdd:TIGR02168  334 ELAEELAELEEKLE--------------------ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  366 RVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSE---AEEQLQGEVEQLHKELERLTGQLRAQ 442
Cdd:TIGR02168  394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEEleeELEELQEELERLEEALEELREELEEA 473
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|.
gi 1676318480  443 VQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILES 483
Cdd:TIGR02168  474 EQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN 514
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
206-555 4.01e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 60.84  E-value: 4.01e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  206 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKA 285
Cdd:TIGR02168  678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  286 AAQLGVEELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYA---ENLKGESAM 362
Cdd:TIGR02168  758 ELEAEIEELEERLEEAEEELAEAEAEIEEL--EAQIEQLKEELKALREALDELRAELTLLNEEAANLRerlESLERRIAA 835
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  363 WQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEE-----PPPPEPPAGPSEAEEQLQGEVEQLHKELERLTG 437
Cdd:TIGR02168  836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnerASLEEALALLRSELEELSEELRELESKRSELRR 915
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  438 QLRAQvqdNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTisralsQNRELKEQLAELQNGFVRLTN 517
Cdd:TIGR02168  916 ELEEL---REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIED------DEEEARRRLKRLENKIKELGP 986
                          330       340       350
                   ....*....|....*....|....*....|....*...
gi 1676318480  518 ENMEITSALQSEQHVKKELARKLGELQERLGELKETVE 555
Cdd:TIGR02168  987 VNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIE 1024
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
168-447 2.01e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 58.53  E-value: 2.01e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  168 LREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTK 247
Cdd:TIGR02168  682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  248 ERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKL-----EMSELLLQQFSSQSSAAGGNEQLQ 322
Cdd:TIGR02168  762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtllneEAANLRERLESLERRIAATERRLE 841
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  323 HAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGesamWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQM 402
Cdd:TIGR02168  842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEA----LLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*
gi 1676318480  403 EEPPppeppagpsEAEEQLQGEVEQLHKELERLTGQLRAQVQDNE 447
Cdd:TIGR02168  918 EELR---------EKLAQLELRLEGLEVRIDNLQERLSEEYSLTL 953
mukB PRK04863
chromosome partition protein MukB;
264-614 2.45e-08

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 58.43  E-value: 2.45e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  264 EDLRQQNSELEEKLrvlvaekAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLK 343
Cdd:PRK04863   789 EQLRAEREELAERY-------ATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQ 861
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  344 QLQVERDQYAENLKGESAM-----------WQQRVQQMAEQVHTLKEEKEHRERQ---VQELETSLAALRSqmeeppppe 409
Cdd:PRK04863   862 QQRSQLEQAKEGLSALNRLlprlnlladetLADRVEEIREQLDEAEEAKRFVQQHgnaLAQLEPIVSVLQS--------- 932
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  410 ppagPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQrwseqaEERKQILESMQSDRt 489
Cdd:PRK04863   933 ----DPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLN------EKLRQRLEQAEQER- 1001
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  490 tisralsqnRELKEQLAELQNGFvrltNENMEITSALQSEQHVKKELarkLGELQERLGELkeTVELKSQEAQGLQEQRD 569
Cdd:PRK04863  1002 ---------TRAREQLRQAQAQL----AQYNQVLASLKSSYDAKRQM---LQELKQELQDL--GVPADSGAEERARARRD 1063
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*
gi 1676318480  570 QClshlqqyaaaYQQHLAAYEQltseKEAIHKQLLLQTQLMDQLQ 614
Cdd:PRK04863  1064 EL----------HARLSANRSR----RNQLEKQLTFCEAEMDNLT 1094
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
110-639 3.05e-08

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 57.82  E-value: 3.05e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  110 ELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILvsekAEL 189
Cdd:pfam15921  114 DLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVL----QEI 189
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  190 QTALAHTQQAARQKAGESEDLAS-RLQSSRQRVGELERTLSTvstqqkqadrynkdltkERDALKLELYKNSKSNEDLRq 268
Cdd:pfam15921  190 RSILVDFEEASGKKIYEHDSMSTmHFRSLGSAISKILRELDT-----------------EISYLKGRIFPVEDQLEALK- 251
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  269 qnSELEEKLRVLVAEKaaaQLGVEEL--QKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEeraQLETHVSQLMESLKQLQ 346
Cdd:pfam15921  252 --SESQNKIELLLQQH---QDRIEQLisEHEVEITGLTEKASSARSQANSIQSQLEIIQE---QARNQNSMYMRQLSDLE 323
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  347 VERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMeepppPEPPAGPSEAEEQLQGEVE 426
Cdd:pfam15921  324 STVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQL-----QKLLADLHKREKELSLEKE 398
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  427 QLHKELERLTGqlraqvqDNESLSHLNREQEGRLLELER-EAQRWSEQAEERKQILESM---QSDRTTISRALSQNRELK 502
Cdd:pfam15921  399 QNKRLWDRDTG-------NSITIDHLRRELDDRNMEVQRlEALLKAMKSECQGQMERQMaaiQGKNESLEKVSSLTAQLE 471
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  503 EQLAELQNGFVRLTNENMEITSALQSEQHVK---KELARKLGELQERLGELKETVELKSQEAQGLQEQRDQcLSHLQQYA 579
Cdd:pfam15921  472 STKEMLRKVVEELTAKKMTLESSERTVSDLTaslQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDH-LRNVQTEC 550
                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1676318480  580 AAYQQHLAayeqltsEKEAIHKQLLLQTQLMDQL--QHEEVQGKMAAELARQELQEAQERLK 639
Cdd:pfam15921  551 EALKLQMA-------EKDKVIEILRQQIENMTQLvgQHGRTAGAMQVEKAQLEKEINDRRLE 605
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
319-561 1.26e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 55.69  E-value: 1.26e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  319 EQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLkgesamWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAAL 398
Cdd:COG4913    255 EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLEL------LEAELEELRAELARLEAELERLEARLDALREELDEL 328
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  399 RSQMEEPpppeppagPSEAEEQLQGEVEQLHKELERLTgQLRAQVQdnESLSHLNREQEGRLLELEREAQRWSEQAEERK 478
Cdd:COG4913    329 EAQIRGN--------GGDRLEQLEREIERLERELEERE-RRRARLE--ALLAALGLPLPASAEEFAALRAEAAALLEALE 397
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  479 QILESMQSDRTTISRALsqnRELKEQLAELQNGFVRLTNENMEITSALqseQHVKKELARKLGELQERL---GELketVE 555
Cdd:COG4913    398 EELEALEEALAEAEAAL---RDLRRELRELEAEIASLERRKSNIPARL---LALRDALAEALGLDEAELpfvGEL---IE 468

                   ....*.
gi 1676318480  556 LKSQEA 561
Cdd:COG4913    469 VRPEEE 474
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
136-644 1.95e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 55.31  E-value: 1.95e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  136 IEELKQQnQDTLDQLEKEKKDYQQKLAK--EQGSLREQLQVHIQTIgilvsEKAELQTALAHTQQAARQKAGESEDLASR 213
Cdd:COG4913    244 LEDAREQ-IELLEPIRELAERYAAARERlaELEYLRAALRLWFAQR-----RLELLEAELEELRAELARLEAELERLEAR 317
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  214 LQSSRQRVGELERTLSTVSTQQKQadrynkDLTKERDALKLELyknsksnEDLRQQNSELEEKLRVLVAEKAAAQLGVEE 293
Cdd:COG4913    318 LDALREELDELEAQIRGNGGDRLE------QLEREIERLEREL-------EERERRRARLEALLAALGLPLPASAEEFAA 384
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  294 LQKKL---------EMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLqveRDQYAENL-------- 356
Cdd:COG4913    385 LRAEAaallealeeELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL---RDALAEALgldeaelp 461
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  357 --------KGESAMWQ---------------------QRVQ------QMAEQVHTLKEEKEHRERQVQEL-ETSLAAlrs 400
Cdd:COG4913    462 fvgelievRPEEERWRgaiervlggfaltllvppehyAAALrwvnrlHLRGRLVYERVRTGLPDPERPRLdPDSLAG--- 538
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  401 qmeeppppEPPAGPSEAEEQLQGE------------VEQLHKELERLT--GQL-----RAQVQDNESLSHL------NRE 455
Cdd:COG4913    539 --------KLDFKPHPFRAWLEAElgrrfdyvcvdsPEELRRHPRAITraGQVkgngtRHEKDDRRRIRSRyvlgfdNRA 610
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  456 Q----EGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQN------RELKEQLAELQNGFVRLTNENMEItsa 525
Cdd:COG4913    611 KlaalEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdeidvASAEREIAELEAELERLDASSDDL--- 687
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  526 lqseqhvkKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQhlaayeqlTSEKEAIHKQLLL 605
Cdd:COG4913    688 --------AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA--------AEDLARLELRALL 751
                          570       580       590
                   ....*....|....*....|....*....|....*....
gi 1676318480  606 QTQLmDQLQHEEVQGKMAAELaRQELQEAQERLKATSQE 644
Cdd:COG4913    752 EERF-AAALGDAVERELRENL-EERIDALRARLNRAEEE 788
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
219-559 2.71e-07

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 54.74  E-value: 2.71e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 219 QRVGELERTLSTVSTQQKQAD-RYNKDLTKERDALK--LELYKNSKSNEDlRQQNSELEEKLRVLVAEKAAAQLGVEELQ 295
Cdd:pfam17380 237 ERRKESFNLAEDVTTMTPEYTvRYNGQTMTENEFLNqlLHIVQHQKAVSE-RQQQEKFEKMEQERLRQEKEEKAREVERR 315
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 296 KKLEMSELLlQQFSSQSSAAGGNEQLQHAMEERAQLE----THVSQLMESLKQ----LQVERDQYAENLKGESAMWQQRV 367
Cdd:pfam17380 316 RKLEEAEKA-RQAEMDRQAAIYAEQERMAMERERELErirqEERKRELERIRQeeiaMEISRMRELERLQMERQQKNERV 394
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 368 QQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPppeppagpseaEEQLQGEVEQLHKELERLTGQLRAQVQDNE 447
Cdd:pfam17380 395 RQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEAR-----------QREVRRLEEERAREMERVRLEEQERQQQVE 463
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 448 SLSHLNREQEGRLLELEREAQRWSEQAEERKQILE-SMQSDRTTISRALSQNRELKEQLAELQNGFV----RLTNENMEI 522
Cdd:pfam17380 464 RLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEkELEERKQAMIEEERKRKLLEKEMEERQKAIYeeerRREAEEERR 543
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1676318480 523 TSALQSEQHVKKELARKLGELQERLGELKETVELKSQ 559
Cdd:pfam17380 544 KQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQ 580
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
133-555 2.92e-07

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 54.68  E-value: 2.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 133 SSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLrEQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLAS 212
Cdd:PRK03918  188 TENIEELIKEKEKELEEVLREINEISSELPELREEL-EKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEE 266
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 213 RLQSSRQRVGELERTLSTVSTQQKQADRYNKdLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAaqlgVE 292
Cdd:PRK03918  267 RIEELKKEIEELEEKVKELKELKEKAEEYIK-LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER----LE 341
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 293 ELQKKLEMSELLLQQFssqssaaggneqlqhamEERAQLETHVSQLMESLKQLQVERDQYA-ENLKGESAMWQQRVQQMA 371
Cdd:PRK03918  342 ELKKKLKELEKRLEEL-----------------EERHELYEEAKAKKEELERLKKRLTGLTpEKLEKELEELEKAKEEIE 404
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 372 EQVHTLKEEKEHRERQVQELETSLAALRSqmeePPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSH 451
Cdd:PRK03918  405 EEISKITARIGELKKEIKELKKAIEELKK----AKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRK 480
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 452 LNREQEGRLLElEREAQRWSEQAEERKQILESMQS-DRTTISRALSQNRELKEQLAELQnGFVRLTNENMEITSALQSEq 530
Cdd:PRK03918  481 ELRELEKVLKK-ESELIKLKELAEQLKELEEKLKKyNLEELEKKAEEYEKLKEKLIKLK-GEIKSLKKELEKLEELKKK- 557
                         410       420
                  ....*....|....*....|....*
gi 1676318480 531 hvKKELARKLGELQERLGELKETVE 555
Cdd:PRK03918  558 --LAELEKKLDELEEELAELLKELE 580
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
416-783 3.91e-07

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 54.19  E-value: 3.91e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  416 EAEEQLQGEVEQLH----------KELERLTGQLRAQVQDNESLS-HLNREQEG---------RLLELEREAQRWSEQAE 475
Cdd:COG3096    289 ELRRELFGARRQLAeeqyrlvemaRELEELSARESDLEQDYQAASdHLNLVQTAlrqqekierYQEDLEELTERLEEQEE 368
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  476 ERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFvrltneNMEITSALQSEQHVK-KELARKLGELQERLGE-LKET 553
Cdd:COG3096    369 VVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAL------DVQQTRAIQYQQAVQaLEKARALCGLPDLTPEnAEDY 442
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  554 VELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTS-----EKEAIHKQlllQTQLMDQLQHEEVQGKMAAELaR 628
Cdd:COG3096    443 LAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKiagevERSQAWQT---ARELLRRYRSQQALAQRLQQL-R 518
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  629 QELQEAQERLKatSQENQQLQAQLSLLVLPGEGdvdqeeedeevpQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLR 708
Cdd:COG3096    519 AQLAELEQRLR--QQQNAERLLEEFCQRIGQQL------------DAAEELEELLAELEAQLEELEEQAAEAVEQRSELR 584
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1676318480  709 VQLKEQKARCRSLSHLAaPVQSKLEkEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELE 783
Cdd:COG3096    585 QQLEQLRARIKELAARA-PAWLAAQ-DALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAARKQALE 657
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
78-555 1.06e-06

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 52.73  E-value: 1.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  78 ESLRQLSQQLNGLVSESTSYINGEGLTSSNMK-------ELENRYQELAVALDSSYVTNKQLSSTIEELKQqNQDTLDQL 150
Cdd:PRK02224  279 EEVRDLRERLEELEEERDDLLAEAGLDDADAEavearreELEDRDEELRDRLEECRVAAQAHNEEAESLRE-DADDLEER 357
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 151 EKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLST 230
Cdd:PRK02224  358 AEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRT 437
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 231 VSTQQKQADRYnkdltkeRDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLlqqfss 310
Cdd:PRK02224  438 ARERVEEAEAL-------LEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDL------ 504
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 311 qSSAAGGNEQLQHAMEERAQL-ETHVSQLMESLKQLQVERDQyAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQ 389
Cdd:PRK02224  505 -VEAEDRIERLEERREDLEELiAERRETIEEKRERAEELRER-AAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA 582
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 390 ELETSLAALrsqmeeppppeppagpsEAEEQLQGEVEQLHKELERLTGQLraqvqdnESLSHLNREQEGRLLEL-EREAQ 468
Cdd:PRK02224  583 ELKERIESL-----------------ERIRTLLAAIADAEDEIERLREKR-------EALAELNDERRERLAEKrERKRE 638
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 469 RWSEQAEERkqiLESMQSDRTTISRALSQN----RELKEQLAELQNgfvrltnenmEITSalqseqhVKKELARkLGELQ 544
Cdd:PRK02224  639 LEAEFDEAR---IEEAREDKERAEEYLEQVeeklDELREERDDLQA----------EIGA-------VENELEE-LEELR 697
                         490
                  ....*....|.
gi 1676318480 545 ERLGELKETVE 555
Cdd:PRK02224  698 ERREALENRVE 708
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
221-643 1.65e-06

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 52.08  E-value: 1.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 221 VGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEM 300
Cdd:COG4717    48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 301 SELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEE 380
Cdd:COG4717   128 LPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR 207
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 381 KEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQ-------------LQGEVEQLHKELERLTGQLRAQV---- 443
Cdd:COG4717   208 LAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEarlllliaaallaLLGLGGSLLSLILTIAGVLFLVLglla 287
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 444 -----QDNESLSHLNREQEGRLLELER--EAQRWSEQAEER-----------KQILESMQSDRTTISRALSQNRELK--E 503
Cdd:COG4717   288 llfllLAREKASLGKEAEELQALPALEelEEEELEELLAALglppdlspeelLELLDRIEELQELLREAEELEEELQleE 367
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 504 QLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVE--LKSQEAQGLQEQRDQCLSHLQQYAAA 581
Cdd:COG4717   368 LEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEelLEALDEEELEEELEELEEELEELEEE 447
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676318480 582 YQQHLAAYEQLTSEKEAIHK-----QLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQ 643
Cdd:COG4717   448 LEELREELAELEAELEQLEEdgelaELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERL 514
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
243-644 2.78e-06

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 51.31  E-value: 2.78e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 243 KDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQ 322
Cdd:COG4717    49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL 128
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 323 HAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQM 402
Cdd:COG4717   129 PLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRL 208
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 403 EEPPppeppagpsEAEEQLQGEVEQLHKELERLTGQLRAQvQDNESLSHLNREQ--EGRLLELEREAQRWSEQAEERKQI 480
Cdd:COG4717   209 AELE---------EELEEAQEELEELEEELEQLENELEAA-ALEERLKEARLLLliAAALLALLGLGGSLLSLILTIAGV 278
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 481 LESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKEL-----------ARKLGELQERLGE 549
Cdd:COG4717   279 LFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLspeellelldrIEELQELLREAEE 358
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 550 LKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHlAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELA-- 627
Cdd:COG4717   359 LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQA-EEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEel 437
                         410
                  ....*....|....*..
gi 1676318480 628 RQELQEAQERLKATSQE 644
Cdd:COG4717   438 EEELEELEEELEELREE 454
PTZ00121 PTZ00121
MAEBL; Provisional
151-645 2.95e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 51.68  E-value: 2.95e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  151 EKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTlst 230
Cdd:PTZ00121  1234 EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK--- 1310
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  231 vSTQQKQADRYNK---DLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQ 307
Cdd:PTZ00121  1311 -AEEAKKADEAKKkaeEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE 1389
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  308 FSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQ 387
Cdd:PTZ00121  1390 KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEA 1469
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  388 VQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGE-----VEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLE 462
Cdd:PTZ00121  1470 KKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAeakkkADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  463 LEREAQRwSEQAEERKQILESM--QSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKL 540
Cdd:PTZ00121  1550 ELKKAEE-LKKAEEKKKAEEAKkaEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA 1628
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  541 GELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQlllqtqlMDQLQHEEVQG 620
Cdd:PTZ00121  1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA-------AEALKKEAEEA 1701
                          490       500
                   ....*....|....*....|....*..
gi 1676318480  621 KMAAELARQELQEAQ--ERLKATSQEN 645
Cdd:PTZ00121  1702 KKAEELKKKEAEEKKkaEELKKAEEEN 1728
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
134-851 2.95e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 51.22  E-value: 2.95e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  134 STIEELKQQNQDTLDQLEKEKKDYQQKL---AKEQGSLREQLQVHIQTigilvsEKAELQTALAHTQQAARQKAGESEDL 210
Cdd:TIGR02169  247 ASLEEELEKLTEEISELEKRLEEIEQLLeelNKKIKDLGEEEQLRVKE------KIGELEAEIASLERSIAEKERELEDA 320
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  211 ASRLQSSRQRVGELERTLSTVSTQQKQadrynkdLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLG 290
Cdd:TIGR02169  321 EERLAKLEAEIDKLLAEIEELEREIEE-------ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  291 VEELQKKLEmselllqqfSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGEsamwQQRVQQM 370
Cdd:TIGR02169  394 LEKLKREIN---------ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ----EWKLEQL 460
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  371 AEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSE-----AEEQLQ-------GEVEQLHKELER---- 434
Cdd:TIGR02169  461 AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVrggraVEEVLKasiqgvhGTVAQLGSVGERyata 540
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  435 ----LTGQLRAQVQDNES-----LSHLNREQEGR------------------------------LLELEREAQRWSEQAE 475
Cdd:TIGR02169  541 ievaAGNRLNNVVVEDDAvakeaIELLKRRKAGRatflplnkmrderrdlsilsedgvigfavdLVEFDPKYEPAFKYVF 620
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  476 ERKQILESMQSDR--TTISRALSQNRELKEQLAELQNGFVrltnenmeitsALQSEQHVKKELARKLGELQERLGELKET 553
Cdd:TIGR02169  621 GDTLVVEDIEAARrlMGKYRMVTLEGELFEKSGAMTGGSR-----------APRGGILFSRSEPAELQRLRERLEGLKRE 689
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  554 VELKSQEAQGLQEQRDQCLSHLQqyaAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQH--------EEVQGKMAAE 625
Cdd:TIGR02169  690 LSSLQSELRRIENRLDELSQELS---DASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSleqeienvKSELKELEAR 766
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  626 LARQELQEAQERLKATSQENQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSslaIPEDLDSREAMVAFFNAAIARAEEEQA 705
Cdd:TIGR02169  767 IEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLRE---IEQKLNRLTLEKEYLEKEIQELQEQRI 843
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  706 RLRVQLKEQKARCRSLSHLAAPVQSKLEKEAVVPRNVDDSASEESNQALHV--AMEKLQSRFLEVMQEKVELKERVEELE 783
Cdd:TIGR02169  844 DLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELeaQLRELERKIEELEAQIEKKRKRLSELK 923
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  784 HCCIQLSGETDTIGEYIALYQNQRA------VLKARHLEKEEYISRLA-------QDKEEMKVKLLELQELVLRLVNERN 850
Cdd:TIGR02169  924 AKLEALEEELSEIEDPKGEDEEIPEeelsleDVQAELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERK 1003

                   .
gi 1676318480  851 E 851
Cdd:TIGR02169 1004 A 1004
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
136-645 3.62e-06

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 51.19  E-value: 3.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 136 IEELKQQNQDTLDQLEKekkdyqQKLAKEQGSLREQLQVhiqtigiLVSEKAELQTALAHTQQAARQKAGESEDLASRLQ 215
Cdd:PRK02224  178 VERVLSDQRGSLDQLKA------QIEEKEEKDLHERLNG-------LESELAELDEEIERYEEQREQARETRDEADEVLE 244
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 216 SSRQRVGELERTLSTV--STQQKQADRynkdltKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEE 293
Cdd:PRK02224  245 EHEERREELETLEAEIedLRETIAETE------REREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREE 318
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 294 LQKKLEmselllqqfssqssaaggnEQLQHAMEERAQLETHVSQlmeslkqlqverdqyAENLKGESAMWQQRVQQMAEQ 373
Cdd:PRK02224  319 LEDRDE-------------------ELRDRLEECRVAAQAHNEE---------------AESLREDADDLEERAEELREE 364
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 374 VHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGpsEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLShlN 453
Cdd:PRK02224  365 AAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP--VDLGNAEDFLEELREERDELREREAELEATLRTAR--E 440
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 454 REQEGRLLeleREAQRWSE--QAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLtnenmeiTSALQSEQH 531
Cdd:PRK02224  441 RVEEAEAL---LEAGKCPEcgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA-------EDLVEAEDR 510
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 532 VKKeLARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMD 611
Cdd:PRK02224  511 IER-LEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIE 589
                         490       500       510
                  ....*....|....*....|....*....|....
gi 1676318480 612 QLQHEEVQGKMAAElARQELQEAQERLKATSQEN 645
Cdd:PRK02224  590 SLERIRTLLAAIAD-AEDEIERLREKREALAELN 622
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
243-508 3.67e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 51.07  E-value: 3.67e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  243 KDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVL--VAEKAAAQLGVEELQKKLEMSELLLQQFSS--------QS 312
Cdd:COG4913    613 AALEAELAELEEELAEAEERLEALEAELDALQERREALqrLAEYSWDEIDVASAEREIAELEAELERLDAssddlaalEE 692
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  313 SAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELE 392
Cdd:COG4913    693 QLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLE 772
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  393 TSLAALRSQMeeppppeppagpSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNES-LSHLNREQEGRLLELEreaQRWs 471
Cdd:COG4913    773 ERIDALRARL------------NRAEEELERAMRAFNREWPAETADLDADLESLPEyLALLDRLEEDGLPEYE---ERF- 836
                          250       260       270
                   ....*....|....*....|....*....|....*...
gi 1676318480  472 eqaeeRKQILESMQSDRTTISRALSQNREL-KEQLAEL 508
Cdd:COG4913    837 -----KELLNENSIEFVADLLSKLRRAIREiKERIDPL 869
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
109-639 4.69e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 50.68  E-value: 4.69e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  109 KELENRYQELAVALDSsyvTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAkEQGSLREQLQVHIQTIGI-LVSEKA 187
Cdd:COG4913    305 ARLEAELERLEARLDA---LREELDELEAQIRGNGGDRLEQLEREIERLERELE-ERERRRARLEALLAALGLpLPASAE 380
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  188 ELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQ----QKQADRYNKDLTKERDALKLELyknSKSN 263
Cdd:COG4913    381 EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEiaslERRKSNIPARLLALRDALAEAL---GLDE 457
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  264 EDLR------QQNSELEE------------KLRVLVAEKAAAQ----------------LGVEELQKKLEMSEL----LL 305
Cdd:COG4913    458 AELPfvgeliEVRPEEERwrgaiervlggfALTLLVPPEHYAAalrwvnrlhlrgrlvyERVRTGLPDPERPRLdpdsLA 537
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  306 QQFSSQSSAAGG--NEQLQHAM-----EERAQLETHVSQLME--------SLKQLQVERDQYAENLKGESAmwQQRVQQM 370
Cdd:COG4913    538 GKLDFKPHPFRAwlEAELGRRFdyvcvDSPEELRRHPRAITRagqvkgngTRHEKDDRRRIRSRYVLGFDN--RAKLAAL 615
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  371 AEQVHTLKEEKEHRERQVQELETSLAALRSQmeePPPPEPPAGPSEAEEqlqgEVEQLHKELERLTGQLRAQVQDNESLS 450
Cdd:COG4913    616 EAELAELEEELAEAEERLEALEAELDALQER---REALQRLAEYSWDEI----DVASAEREIAELEAELERLDASSDDLA 688
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  451 HLNREQEgrllELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENM-EITSALQSE 529
Cdd:COG4913    689 ALEEQLE----ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERfAAALGDAVE 764
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  530 QHVKKELARKLGELQERLGELKETVELKSQEAqglQEQRDQCLSHLQQYAAAYQQHLAAYEQLTS----EKEAIHKQLLL 605
Cdd:COG4913    765 RELRENLEERIDALRARLNRAEEELERAMRAF---NREWPAETADLDADLESLPEYLALLDRLEEdglpEYEERFKELLN 841
                          570       580       590
                   ....*....|....*....|....*....|....*.
gi 1676318480  606 Q--TQLMDQLQHEevqgkmaaelARQELQEAQERLK 639
Cdd:COG4913    842 EnsIEFVADLLSK----------LRRAIREIKERID 867
PRK11281 PRK11281
mechanosensitive channel MscK;
186-647 7.29e-06

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 49.91  E-value: 7.29e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  186 KAELQTALahtQQAARQKAGESEDLASrlqssrqrVGELERTLSTVstqqKQADRYNKDLtkerDALKLELyknSKSNED 265
Cdd:PRK11281    38 EADVQAQL---DALNKQKLLEAEDKLV--------QQDLEQTLALL----DKIDRQKEET----EQLKQQL---AQAPAK 95
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  266 LRQQNSELE--EKLRVLVAEKAAAQLGVEELQKKLEmsELLLQQFSSQSSAAGGNEQL--QHAMEERAQlethvSQLMES 341
Cdd:PRK11281    96 LRQAQAELEalKDDNDEETRETLSTLSLRQLESRLA--QTLDQLQNAQNDLAEYNSQLvsLQTQPERAQ-----AALYAN 168
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  342 lkqlqverdqyaenlkgesamwQQRVQQMAEQVHTLKEEKEH-RERQVQELETSLAALRSQMEEPPPPEppagpsEAEEQ 420
Cdd:PRK11281   169 ----------------------SQRLQQIRNLLKGGKVGGKAlRPSQRVLLQAEQALLNAQNDLQRKSL------EGNTQ 220
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  421 LQGEVEQLHKELERLTGQLRAQVQDNESLshLNREqegRLLELEREAQrwseQAEERKQILESMQSDrtTISRALSQNRE 500
Cdd:PRK11281   221 LQDLLQKQRDYLTARIQRLEHQLQLLQEA--INSK---RLTLSEKTVQ----EAQSQDEAARIQANP--LVAQELEINLQ 289
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  501 LKEQLAELQNGFVRLTNENMEIT----SALQSEQHVKKE---------LARKLGELQERLGELKETVELKSQEAQ----- 562
Cdd:PRK11281   290 LSQRLLKATEKLNTLTQQNLRVKnwldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLADRIADlrleq 369
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  563 -GLQEQRDQcLSHLQQYAAAyqqhlaayeqltsekeaihkqlLLQTQlmdqlqheevQGKMAAELARQELQEAQERLKAT 641
Cdd:PRK11281   370 fEINQQRDA-LFQPDAYIDK----------------------LEAGH----------KSEVTDEVRDALLQLLDERRELL 416

                   ....*.
gi 1676318480  642 SQENQQ 647
Cdd:PRK11281   417 DQLNKQ 422
mukB PRK04863
chromosome partition protein MukB;
169-559 1.02e-05

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 49.57  E-value: 1.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  169 REQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVST---QQKQADRYNKDL 245
Cdd:PRK04863   278 ANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTalrQQEKIERYQADL 357
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  246 tkerDALKLELYKNSKSNEDLRQQNSELEEKLRvlvaekaAAQLGVEELQKKLEMSElllQQFSSQSSAAGGNEQLQHAM 325
Cdd:PRK04863   358 ----EELEERLEEQNEVVEEADEQQEENEARAE-------AAEEEVDELKSQLADYQ---QALDVQQTRAIQYQQAVQAL 423
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  326 EERAQL----ETHVSQLMESLKQLQVERDQYAENLKG------ESAMWQQRVQQMAEQVHTLKEEKEHRE--RQVQELET 393
Cdd:PRK04863   424 ERAKQLcglpDLTADNAEDWLEEFQAKEQEATEELLSleqklsVAQAAHSQFEQAYQLVRKIAGEVSRSEawDVARELLR 503
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  394 SLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLhkeLERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQ 473
Cdd:PRK04863   504 RLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERL---LAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARER 580
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  474 AEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKET 553
Cdd:PRK04863   581 RMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEE 660

                   ....*.
gi 1676318480  554 VELKSQ 559
Cdd:PRK04863   661 IERLSQ 666
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
272-543 1.07e-05

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 49.57  E-value: 1.07e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  272 ELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQ 351
Cdd:COG3096    789 ELRAERDELAEQYAKASFDVQKLQRLHQAFSQFVGGHLAVAFAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQ 868
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  352 YAENLKGESAM-----------WQQRVQQMAEQVHTLKEEKEHRERQ---VQELETSLAALRSqmeeppppeppagPSEA 417
Cdd:COG3096    869 LKEQLQLLNKLlpqanlladetLADRLEELREELDAAQEAQAFIQQHgkaLAQLEPLVAVLQS-------------DPEQ 935
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  418 EEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLElerEAQRWSEQAEERkqiLESMQSDRttisralsq 497
Cdd:COG3096    936 FEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDAVGLLG---ENSDLNEKLRAR---LEQAEEAR--------- 1000
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*.
gi 1676318480  498 nRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGEL 543
Cdd:COG3096   1001 -REAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEEL 1045
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
210-434 1.26e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 48.61  E-value: 1.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 210 LASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQL 289
Cdd:COG4942    11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 290 GVEELQKKLE-----MSELL--LQQFSSQSS-----AAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLK 357
Cdd:COG4942    91 EIAELRAELEaqkeeLAELLraLYRLGRQPPlalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676318480 358 GESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPppeppagpsEAEEQLQGEVEQLHKELER 434
Cdd:COG4942   171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ---------QEAEELEALIARLEAEAAA 238
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
3-644 1.29e-05

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 49.20  E-value: 1.29e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480    3 EETRQSKLAAAKKKLREYQQKnspgvpagakkkkkIKNGHSPERPTASDCQSPENSHDAGNCSNLMEETKTFSSTESLRQ 82
Cdd:pfam02463  196 KLQELKLKEQAKKALEYYQLK--------------EKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIE 261
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480   83 LSQQLNGLVSESTSYINGEgltSSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLA 162
Cdd:pfam02463  262 KEEEKLAQVLKENKEEEKE---KKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIE 338
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  163 KEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYN 242
Cdd:pfam02463  339 ELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLE 418
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  243 KDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFS----SQSSAAGGN 318
Cdd:pfam02463  419 DLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQlellLSRQKLEER 498
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  319 EQLQHAMEERAQLETHVSQLMESLKQLQVERDQ--YAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLA 396
Cdd:pfam02463  499 SQKESKARSGLKVLLALIKDGVGGRIISAHGRLgdLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGAR 578
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  397 ALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEReaqrwsEQAEE 476
Cdd:pfam02463  579 KLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESG------LRKGV 652
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  477 RKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVEL 556
Cdd:pfam02463  653 SLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQD 732
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  557 KSQEAQGLQEQR-------DQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQ 629
Cdd:pfam02463  733 KINEELKLLKQKideeeeeEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKE 812
                          650
                   ....*....|....*
gi 1676318480  630 ELQEAQERLKATSQE 644
Cdd:pfam02463  813 EAELLEEEQLLIEQE 827
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
131-807 1.33e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 49.30  E-value: 1.33e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  131 QLSSTIEELKQQnQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDL 210
Cdd:TIGR02169  291 RVKEKIGELEAE-IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL 369
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  211 ASRLQssrqrvgELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLG 290
Cdd:TIGR02169  370 RAELE-------EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE 442
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  291 VEELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMwQQRVQQM 370
Cdd:TIGR02169  443 KEDKALEIKKQEWKLEQLAADLSKY--EQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAV-EEVLKAS 519
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  371 AEQVH-TLKEEKEHRERQVQELETSLAA-------------------LRS---------------QMEEPPPPEPPAGPS 415
Cdd:TIGR02169  520 IQGVHgTVAQLGSVGERYATAIEVAAGNrlnnvvveddavakeaielLKRrkagratflplnkmrDERRDLSILSEDGVI 599
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  416 -------EAEEQLQGEVEQ------LHKELE---RLTGQLRAQVQDNESL---------SHLNREQEGRLLELEREAQRW 470
Cdd:TIGR02169  600 gfavdlvEFDPKYEPAFKYvfgdtlVVEDIEaarRLMGKYRMVTLEGELFeksgamtggSRAPRGGILFSRSEPAELQRL 679
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  471 SEQAEERKQILESMQSDRTTISRALSqnrELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGEL 550
Cdd:TIGR02169  680 RERLEGLKRELSSLQSELRRIENRLD---ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  551 KETVELKSQEAQGLQEQrdqcLSHLQQYAAAYQQHLAAY-----EQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAE 625
Cdd:TIGR02169  757 KSELKELEARIEELEED----LHKLEEALNDLEARLSHSripeiQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  626 LARQELQEAQERLKATSQENQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSSLA-IPEDLDSREAMVAFFNAAIARAEEEQ 704
Cdd:TIGR02169  833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGdLKKERDELEAQLRELERKIEELEAQI 912
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  705 ARLRVQLKEQKARCRSL-SHLAAPVQSKLEKEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELE 783
Cdd:TIGR02169  913 EKKRKRLSELKAKLEALeEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELK 992
                          730       740
                   ....*....|....*....|....
gi 1676318480  784 HCCIQLSGETDTIGEYIALYQNQR 807
Cdd:TIGR02169  993 EKRAKLEEERKAILERIEEYEKKK 1016
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
415-642 2.10e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 47.84  E-value: 2.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 415 SEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRA 494
Cdd:COG4942    19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 495 LSQNRE-LKEQLAELQ-NGFVRLTNENMEITSALQSE------QHVKKELARKLGELQERLGELKETVELKSQEAQGLQE 566
Cdd:COG4942    99 LEAQKEeLAELLRALYrLGRQPPLALLLSPEDFLDAVrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1676318480 567 QRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLllqtqlmDQLQHEEVQGKMAAELARQELQEAQERLKATS 642
Cdd:COG4942   179 LLAELEEERAALEALKAERQKLLARLEKELAELAAEL-------AELQQEAEELEALIARLEAEAAAAAERTPAAG 247
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
108-471 2.53e-05

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 48.23  E-value: 2.53e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 108 MKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQdtldQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKA 187
Cdd:COG4717   134 LEALEAELAELPERLEELEERLEELRELEEELEELEA----ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLA 209
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 188 ELQTALAHTQQAARQKAGESEDLASRLQSS--RQRVGELERTL---STVSTQQKQADRYNKDLTKERDALKLELYKNSKS 262
Cdd:COG4717   210 ELEEELEEAQEELEELEEELEQLENELEAAalEERLKEARLLLliaAALLALLGLGGSLLSLILTIAGVLFLVLGLLALL 289
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 263 NEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLemSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLmeSL 342
Cdd:COG4717   290 FLLLAREKASLGKEAEELQALPALEELEEEELEELL--AALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL--QL 365
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 343 KQLQVERDQYAENLKGES-AMWQQRVQQmAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQL 421
Cdd:COG4717   366 EELEQEIAALLAEAGVEDeEELRAALEQ-AEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEEL 444
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1676318480 422 QGEVEQLHKELERLTGQLRaQVQDNESLSHLNREQEGRLLELEREAQRWS 471
Cdd:COG4717   445 EEELEELREELAELEAELE-QLEEDGELAELLQELEELKAELRELAEEWA 493
CCDC22 pfam05667
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ...
187-434 2.97e-05

Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.


Pssm-ID: 461708 [Multi-domain]  Cd Length: 600  Bit Score: 47.71  E-value: 2.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 187 AELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGElertlSTVSTQQKQADRYNK-DLTKERDALKLELYKNSKSNED 265
Cdd:pfam05667 254 EQLRSAALAGTEATSGASRSAQDLAELLSSFSGSSTT-----DTGLTKGSRFTHTEKlQFTNEAPAATSSPPTKVETEEE 328
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 266 LRQQN----SELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQssaaggNEQLQHAMEERAQLETHVSQLMES 341
Cdd:pfam05667 329 LQQQReeelEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQ------NEELEKQYKVKKKTLDLLPDAEEN 402
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 342 LKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGpsEAEEQL 421
Cdd:pfam05667 403 IAKLQALVDASAQRLVELAGQWEKHRVPLIEEYRALKEAKSNKEDESQRKLEEIKELREKIKEVAEEAKQKE--ELYKQL 480
                         250
                  ....*....|...
gi 1676318480 422 QGEVEQLHKELER 434
Cdd:pfam05667 481 VAEYERLPKDVSR 493
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
334-638 3.17e-05

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 48.02  E-value: 3.17e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  334 HVSQLMESLKQLQ-VERDQYA-ENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLA----ALRSQM----- 402
Cdd:COG3096    335 HLNLVQTALRQQEkIERYQEDlEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyqqALDVQQtraiq 414
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  403 ------EEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQdNESLSHLNREQEGRLLELER----EAQRwSE 472
Cdd:COG3096    415 yqqavqALEKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQ-KLSVADAARRQFEKAYELVCkiagEVER-SQ 492
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  473 QAEERKQILESMQSDRTTISRALSQNRELKE--QLAELQNGFVRLTNE-NMEITSALQSEQhvkkELARKLGELQERLGE 549
Cdd:COG3096    493 AWQTARELLRRYRSQQALAQRLQQLRAQLAEleQRLRQQQNAERLLEEfCQRIGQQLDAAE----ELEELLAELEAQLEE 568
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  550 LKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHeEVQGKMAAELARQ 629
Cdd:COG3096    569 LEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQ-LLEREREATVERD 647

                   ....*....
gi 1676318480  630 ELQEAQERL 638
Cdd:COG3096    648 ELAARKQAL 656
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
104-508 4.25e-05

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 47.45  E-value: 4.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 104 TSSNMKELENRYQELAVALDS-----SYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQgSLREQLQvhiqt 178
Cdd:COG4717   100 LEEELEELEAELEELREELEKlekllQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELE-ELEAELA----- 173
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 179 igilvSEKAELQTALAHTQQAARQkagESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRynkdltkerdalKLELYK 258
Cdd:COG4717   174 -----ELQEELEELLEQLSLATEE---ELQDLAEELEELQQRLAELEEELEEAQEELEELEE------------ELEQLE 233
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 259 NSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELL--------LQQFSSQSSAAGGNEQLQHAMEERAQ 330
Cdd:COG4717   234 NELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLflvlgllaLLFLLLAREKASLGKEAEELQALPAL 313
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 331 LETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEqvhtlkEEKEHRERQVQELETSLAAL--RSQMEEPPPP 408
Cdd:COG4717   314 EELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE------AEELEEELQLEELEQEIAALlaEAGVEDEEEL 387
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 409 EPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQ--DNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQS 486
Cdd:COG4717   388 RAALEQAEEYQELKEELEELEEQLEELLGELEELLEalDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEE 467
                         410       420
                  ....*....|....*....|..
gi 1676318480 487 DRtTISRALSQNRELKEQLAEL 508
Cdd:COG4717   468 DG-ELAELLQELEELKAELREL 488
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
206-401 4.45e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 47.60  E-value: 4.45e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  206 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQ-------ADRYNKDLTK----ERDALKLELYKNSKSNEDLRQQNSELE 274
Cdd:COG4913    222 DTFEAADALVEHFDDLERAHEALEDAREQIELlepirelAERYAAARERlaelEYLRAALRLWFAQRRLELLEAELEELR 301
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  275 EKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQfssqssaAGGN------EQLQHAMEERAQLETHVSQLMESLKQLQVE 348
Cdd:COG4913    302 AELARLEAELERLEARLDALREELDELEAQIRG-------NGGDrleqleREIERLERELEERERRRARLEALLAALGLP 374
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1676318480  349 rdqyaenLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQ 401
Cdd:COG4913    375 -------LPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE 420
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
64-630 5.01e-05

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 47.27  E-value: 5.01e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480   64 CSNLMEETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQN 143
Cdd:TIGR00618  269 IEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQ 348
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  144 QDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGE 223
Cdd:TIGR00618  349 TLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAH 428
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  224 LERTLS---TVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEM 300
Cdd:TIGR00618  429 AKKQQElqqRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCG 508
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  301 SELLLQQFSSQSSAAGGNEQLQHAMEERAQ-----LETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVH 375
Cdd:TIGR00618  509 SCIHPNPARQDIDNPGPLTRRMQRGEQTYAqletsEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPN 588
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  376 TLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNRE 455
Cdd:TIGR00618  589 LQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIR 668
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  456 QEGRLLELEREAQRWSEQAEerkqiLESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKE 535
Cdd:TIGR00618  669 VLPKELLASRQLALQKMQSE-----KEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQ 743
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  536 LARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQH 615
Cdd:TIGR00618  744 SLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQC 823
                          570
                   ....*....|....*
gi 1676318480  616 EEVQGKMAAELARQE 630
Cdd:TIGR00618  824 ETLVQEEEQFLSRLE 838
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
130-570 8.18e-05

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 46.64  E-value: 8.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 130 KQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQL------QVHIQTIGILVSEKAELQTALAHTQQAARQK 203
Cdd:pfam05483 355 EATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTkfknnkEVELEELKKILAEDEKLLDEKKQFEKIAEEL 434
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 204 AGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAE 283
Cdd:pfam05483 435 KGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLE 514
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 284 KAAAQlgvEELQKKLEMSELLLQQFSSQSsaaggneqlQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMW 363
Cdd:pfam05483 515 LKKHQ---EDIINCKKQEERMLKQIENLE---------EKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEV 582
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 364 QQRVQQMA---EQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQGEVEQLHKELERLTGQLR 440
Cdd:pfam05483 583 LKKEKQMKileNKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAY--EIKVNKLELELASAKQKFEEIIDNYQ 660
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 441 AQVQDNESlshlnrEQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNenm 520
Cdd:pfam05483 661 KEIEDKKI------SEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYK--- 731
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|
gi 1676318480 521 eitSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQ 570
Cdd:pfam05483 732 ---NKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
150-611 1.06e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 45.91  E-value: 1.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 150 LEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLS 229
Cdd:COG4717    47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 230 tvstqqkqadryNKDLTKERDALKLELYKNSKSNEDLRQQN---SELEEKLRVLVAEKAAAQLGVEELQKKL-EMSELLL 305
Cdd:COG4717   127 ------------LLPLYQELEALEAELAELPERLEELEERLeelRELEEELEELEAELAELQEELEELLEQLsLATEEEL 194
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 306 QQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRE 385
Cdd:COG4717   195 QDLAEELEEL--QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLI 272
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 386 RQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEV------EQLHKELERLTGQLRAQVQDNESLSHLNREQEGR 459
Cdd:COG4717   273 LTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPAleeleeEELEELLAALGLPPDLSPEELLELLDRIEELQEL 352
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 460 LLELEREAQR--WSEQAEERKQILESMQ-SDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALqsEQHVKKEL 536
Cdd:COG4717   353 LREAEELEEElqLEELEQEIAALLAEAGvEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELL--EALDEEEL 430
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1676318480 537 ARKLGELQERLGELKETVELKSQEAQGLQEQRDQcLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMD 611
Cdd:COG4717   431 EEELEELEEELEELEEELEELREELAELEAELEQ-LEEDGELAELLQELEELKAELRELAEEWAALKLALELLEE 504
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
364-570 1.14e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.53  E-value: 1.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 364 QQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQGEVEQLHKELERLTGQLRAQV 443
Cdd:COG4942    33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL--EAELAELEKEIAELRAELEAQKEELAELL 110
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 444 QDNESLSHLNREQE----GRLLELEREAQRWSEQAEERKQILEsmqsdrttisralsqnrELKEQLAELQNGFVRLTNEN 519
Cdd:COG4942   111 RALYRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQAE-----------------ELRADLAELAALRAELEAER 173
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1676318480 520 MEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQ 570
Cdd:COG4942   174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
mukB PRK04863
chromosome partition protein MukB;
128-730 1.24e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 46.10  E-value: 1.24e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  128 TNKQLSSTIEELKQQNQ---DTLDQLEkekkdyqQKLAKEQGSLREQLQVH--IQTIGILVSEKAELQTALAHTQQAARQ 202
Cdd:PRK04863   436 TADNAEDWLEEFQAKEQeatEELLSLE-------QKLSVAQAAHSQFEQAYqlVRKIAGEVSRSEAWDVARELLRRLREQ 508
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  203 KAgesedLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDAlklelyknsksNEDLRQQNSELEEKLRVLVA 282
Cdd:PRK04863   509 RH-----LAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDD-----------EDELEQLQEELEARLESLSE 572
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  283 EKAAAQLGVEELQKKLEMSELLLQQFSS--------QSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYA- 353
Cdd:PRK04863   573 SVSEARERRMALRQQLEQLQARIQRLAArapawlaaQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAa 652
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  354 ---------ENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQE---LETSLAALRSQMEEPPppeppagPSEAEEQL 421
Cdd:PRK04863   653 rkqaldeeiERLSQPGGSEDPRLNALAERFGGVLLSEIYDDVSLEDapyFSALYGPARHAIVVPD-------LSDAAEQL 725
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  422 QGEvEQLHKELERLTGQLR--------AQVQDNESLSHLNREQ-----------------EGRLLELEREAQRWSEQAEE 476
Cdd:PRK04863   726 AGL-EDCPEDLYLIEGDPDsfddsvfsVEELEKAVVVKIADRQwrysrfpevplfgraarEKRIEQLRAEREELAERYAT 804
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  477 RKQILESMQSDRTTISRALSQN-------------RELKEQLAELQNGFVRLTNENMEITSALQSeqhvKKELARKLGEL 543
Cdd:PRK04863   805 LSFDVQKLQRLHQAFSRFIGSHlavafeadpeaelRQLNRRRVELERALADHESQEQQQRSQLEQ----AKEGLSALNRL 880
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  544 QERLGELKEtvELKSQEAQGLQEQRDQClshlqQYAAAY-QQHLAAYEQLtsEKEAIhkqlLLQTqlmDQLQHEEVQGkm 622
Cdd:PRK04863   881 LPRLNLLAD--ETLADRVEEIREQLDEA-----EEAKRFvQQHGNALAQL--EPIVS----VLQS---DPEQFEQLKQ-- 942
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  623 AAELARQELQEAQERLKATSQENQQLQAQLSLLVlpgegdvdqeeedeevpqsslaiPEDLDSREAMVAFFNAAIARAEE 702
Cdd:PRK04863   943 DYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDA-----------------------AEMLAKNSDLNEKLRQRLEQAEQ 999
                          650       660
                   ....*....|....*....|....*...
gi 1676318480  703 EQARLRVQLKEQKARCRSLSHLAAPVQS 730
Cdd:PRK04863  1000 ERTRAREQLRQAQAQLAQYNQVLASLKS 1027
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
215-468 1.30e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 45.78  E-value: 1.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 215 QSSRQRVGELERTLSTVstqQKQADRYNKDLtkERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEEL 294
Cdd:COG3206   164 QNLELRREEARKALEFL---EEQLPELRKEL--EEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEA 238
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 295 QKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLEThvsqlmeslkQLQVERDQYAENlkgesamwQQRVQQMAEQV 374
Cdd:COG3206   239 EARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEA----------ELAELSARYTPN--------HPDVIALRAQI 300
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 375 HTLKEEKEHRERQV-QELETSLAALRSQmeeppppeppagpseaEEQLQGEVEQLHKELERLTgqlraqvqdneslshln 453
Cdd:COG3206   301 AALRAQLQQEAQRIlASLEAELEALQAR----------------EASLQAQLAQLEARLAELP----------------- 347
                         250
                  ....*....|....*
gi 1676318480 454 rEQEGRLLELEREAQ 468
Cdd:COG3206   348 -ELEAELRRLEREVE 361
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
136-609 1.49e-04

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 45.73  E-value: 1.49e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  136 IEELKQQNQDTLDQLEKEKKDYQQKLAKEQgsLREQLQVHIQTIGILVSEKAELQTALAHTQQAAR---------QKAGE 206
Cdd:TIGR00618  231 LREALQQTQQSHAYLTQKREAQEEQLKKQQ--LLKQLRARIEELRAQEAVLEETQERINRARKAAPlaahikavtQIEQQ 308
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  207 SEDLASRLQSS-RQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKN-SKSNEDLRQQNSELEEKLRVLVAEK 284
Cdd:TIGR00618  309 AQRIHTELQSKmRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEvATSIREISCQQHTLTQHIHTLQQQK 388
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  285 AAAQLGVEELQKKLEMSELLLQQFSSQSSA--------AGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENL 356
Cdd:TIGR00618  389 TTLTQKLQSLCKELDILQREQATIDTRTSAfrdlqgqlAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSL 468
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  357 KGESAMWQQrVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAE-EQLQGEVEQLHKELERL 435
Cdd:TIGR00618  469 KEREQQLQT-KEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRmQRGEQTYAQLETSEEDV 547
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  436 TGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQsdrttisRALSQNRELKEQLAELQNGFVRL 515
Cdd:TIGR00618  548 YHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQ-------DLTEKLSEAEDMLACEQHALLRK 620
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  516 TNENMEITSALQSEQHVKKELARKLGELQERLGELketveLKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSE 595
Cdd:TIGR00618  621 LQPEQDLQDVRLHLQQCSQELALKLTALHALQLTL-----TQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYW 695
                          490
                   ....*....|....*
gi 1676318480  596 KEAI-HKQLLLQTQL 609
Cdd:TIGR00618  696 KEMLaQCQTLLRELE 710
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
365-625 1.58e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 45.83  E-value: 1.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 365 QRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPP----AGPSEAEEQLQGEVEQLHKELERLTGQLR 440
Cdd:PRK03918  186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEleelKEEIEELEKELESLEGSKRKLEEKIRELE 265
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 441 AQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLtnenm 520
Cdd:PRK03918  266 ERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL----- 340
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 521 eitsalqseqhvkKELARKLGELQERLGELKETVELkSQEAQGLQEQRDQCLSHLQQYAAayQQHLAAYEQLTSEKEAIH 600
Cdd:PRK03918  341 -------------EELKKKLKELEKRLEELEERHEL-YEEAKAKKEELERLKKRLTGLTP--EKLEKELEELEKAKEEIE 404
                         250       260
                  ....*....|....*....|....*
gi 1676318480 601 KQLLLQTQLMDQLQHEEVQGKMAAE 625
Cdd:PRK03918  405 EEISKITARIGELKKEIKELKKAIE 429
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
418-849 1.64e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 45.53  E-value: 1.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 418 EEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALsQ 497
Cdd:COG4717    48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL-Q 126
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 498 NRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQ 577
Cdd:COG4717   127 LLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQ 206
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 578 YAAAYQQHLaayEQLTSEKEAIHKQLllqtqlmdqlqhEEVQGKMAAELARQELQEAQERLKATS-------QENQQLQA 650
Cdd:COG4717   207 RLAELEEEL---EEAQEELEELEEEL------------EQLENELEAAALEERLKEARLLLLIAAallallgLGGSLLSL 271
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 651 QLSLLVLPGEGDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQS 730
Cdd:COG4717   272 ILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQE 351
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 731 KLEKEAVVPRNVDDSASEESNQAL----HVAMEKLQSRFLEVMQEKVELKERVEELEHcciQLSGETDTIGEYIAlyQNQ 806
Cdd:COG4717   352 LLREAEELEEELQLEELEQEIAALlaeaGVEDEEELRAALEQAEEYQELKEELEELEE---QLEELLGELEELLE--ALD 426
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|...
gi 1676318480 807 RAVLKARHLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNER 849
Cdd:COG4717   427 EEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDG 469
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
79-497 2.15e-04

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


Pssm-ID: 444019 [Multi-domain]  Cd Length: 711  Bit Score: 45.34  E-value: 2.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  79 SLRQLSQQLNGLVSESTSYINGEGLTSSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQ 158
Cdd:COG4995    35 AAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALLAAALALALAAAALAALALLAALLA 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 159 QKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQA 238
Cdd:COG4995   115 LAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALALALAAAALALLALLLAALAAALAAA 194
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 239 DRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGN 318
Cdd:COG4995   195 AAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAALAAAAAALLALAAALLLLAALAALA 274
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 319 EQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAAL 398
Cdd:COG4995   275 AAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLLAALALLALLLLLAAAALLAAALAAALA 354
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 399 RSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERK 478
Cdd:COG4995   355 LAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQLLRLLLAALALLLALAAYAAARLALLA 434
                         410
                  ....*....|....*....
gi 1676318480 479 QILESMQSDRTTISRALSQ 497
Cdd:COG4995   435 LIEYIILPDRLYAFVQLYQ 453
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
129-567 2.30e-04

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 45.01  E-value: 2.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 129 NKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKlakeqgslREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESE 208
Cdd:TIGR04523 213 NKSLESQISELKKQNNQLKDNIEKKQQEINEK--------TTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 209 DLASRLQSSRQRVGELErtlstvstQQKQADrYNKDLT-------KERDALKLELYKNSKSNEDLRQQNSELEEKLRVLV 281
Cdd:TIGR04523 285 ELEKQLNQLKSEISDLN--------NQKEQD-WNKELKselknqeKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSE 355
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 282 AEKAAAQLGVEELQKKL-----EMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVErdqyAENL 356
Cdd:TIGR04523 356 SENSEKQRELEEKQNEIeklkkENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE----IERL 431
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 357 KGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEppagpseaeEQLQGEVEQLHKELERLT 436
Cdd:TIGR04523 432 KETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL---------EQKQKELKSKEKELKKLN 502
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 437 GQLRaqvQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRAL--SQNRELKEQLAELQNGFVR 514
Cdd:TIGR04523 503 EEKK---ELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENleKEIDEKNKEIEELKQTQKS 579
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1676318480 515 LTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQ 567
Cdd:TIGR04523 580 LKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSI 632
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
335-783 2.43e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 44.76  E-value: 2.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 335 VSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQV---HTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPP 411
Cdd:COG4717    48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEeeyAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 412 AGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERkqilesMQSDRTTI 491
Cdd:COG4717   128 LPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEE------LQDLAEEL 201
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 492 SRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKK--ELARKLGELQERLGELKETVELKSQEAQGLQEQRD 569
Cdd:COG4717   202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERlkEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFL 281
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 570 QCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQQLQ 649
Cdd:COG4717   282 VLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE 361
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 650 AQLSLlvlpgegdvdqeeedeevpqsslaipedlDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQ 729
Cdd:COG4717   362 ELQLE-----------------------------ELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLE 412
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1676318480 730 SKLEKEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELE 783
Cdd:COG4717   413 ELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLE 466
PTZ00121 PTZ00121
MAEBL; Provisional
4-490 4.21e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 44.36  E-value: 4.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480    4 ETRQSKLAAAKKKLREYQQKNSpgVPAGAKKKKKIKNGHSPERPTASDCQSPENSHDAGNCSNLMEETKtfsSTESLRQL 83
Cdd:PTZ00121  1325 EEAKKKADAAKKKAEEAKKAAE--AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK---KADEAKKK 1399
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480   84 SQQLNGLVSEstsyINGEGLTSSNMKELENRYQELAVAldssyvtnkqlsstiEELKQQNQDTLDQLEKEKKDYQQKLAK 163
Cdd:PTZ00121  1400 AEEDKKKADE----LKKAAAAKKKADEAKKKAEEKKKA---------------DEAKKKAEEAKKADEAKKKAEEAKKAE 1460
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  164 EQGSLREQlqvhiqtigilvSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNK 243
Cdd:PTZ00121  1461 EAKKKAEE------------AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  244 DLTKERDALKLELYKNSKSNEDLR--QQNSELEEKLRVLVAEKA----AAQLGVEELQKKLEMSELLLQQFSSQSSAAGG 317
Cdd:PTZ00121  1529 KAEEAKKADEAKKAEEKKKADELKkaEELKKAEEKKKAEEAKKAeedkNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  318 NEQLQHAMEERAQLET-----HVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQM----------AEQVHTLKEEKE 382
Cdd:PTZ00121  1609 AEEAKKAEEAKIKAEElkkaeEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEakkaeedkkkAEEAKKAEEDEK 1688
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  383 HRERQV-QELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELE---RLTGQLRAQVQDNESLSHLNREQEG 458
Cdd:PTZ00121  1689 KAAEALkKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEedkKKAEEAKKDEEEKKKIAHLKKEEEK 1768
                          490       500       510
                   ....*....|....*....|....*....|..
gi 1676318480  459 RLLELEREAQRWSEQAEERKQILESMQSDRTT 490
Cdd:PTZ00121  1769 KAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
mukB PRK04863
chromosome partition protein MukB;
137-355 4.71e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 44.18  E-value: 4.71e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  137 EELKQQNQDTLDQLEKEKKDYQQKLAKEQ------------------------------GSLREQLQVHIQTIG-ILVSE 185
Cdd:PRK04863   382 EARAEAAEEEVDELKSQLADYQQALDVQQtraiqyqqavqalerakqlcglpdltadnaEDWLEEFQAKEQEATeELLSL 461
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  186 KAELQTALAHTQQ----------------------AARQKAGESED---LASRLQSSRQRVGELERTLSTVSTQQKQADR 240
Cdd:PRK04863   462 EQKLSVAQAAHSQfeqayqlvrkiagevsrseawdVARELLRRLREqrhLAEQLQQLRMRLSELEQRLRQQQRAERLLAE 541
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  241 YNKDLTKERDAlklelyknsksNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSS--------QS 312
Cdd:PRK04863   542 FCKRLGKNLDD-----------EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAArapawlaaQD 610
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 1676318480  313 SAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAEN 355
Cdd:PRK04863   611 ALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAAR 653
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
187-508 4.87e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 44.14  E-value: 4.87e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  187 AELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQAdrynkDLTKERDALKLELYKNSKSNEDL 266
Cdd:COG4913    613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVA-----SAEREIAELEAELERLDASSDDL 687
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  267 R---QQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLqhamEERAQLETHVSQLMESLK 343
Cdd:COG4913    688 AaleEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL----ELRALLEERFAAALGDAV 763
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  344 QLQVeRDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRerqVQELETSLAALRSQMEEPPPPEPPAGPsEAEEQLQG 423
Cdd:COG4913    764 EREL-RENLEERIDALRARLNRAEEELERAMRAFNREWPAE---TADLDADLESLPEYLALLDRLEEDGLP-EYEERFKE 838
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  424 EV-EQLHKELERLTGQLRAQVQD--------NESLSHLnREQEGRLLELEREAQRwSEQAEERKQILESMQSDRTTISRA 494
Cdd:COG4913    839 LLnENSIEFVADLLSKLRRAIREikeridplNDSLKRI-PFGPGRYLRLEARPRP-DPEVREFRQELRAVTSGASLFDEE 916
                          330
                   ....*....|....
gi 1676318480  495 LSQNRElkEQLAEL 508
Cdd:COG4913    917 LSEARF--AALKRL 928
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
132-357 5.09e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 43.85  E-value: 5.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 132 LSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHI-----QTIGILVSEKAELQTALAHTQQAARQKAGE 206
Cdd:COG3206   162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGlvdlsEEAKLLLQQLSELESQLAEARAELAEAEAR 241
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 207 SEDLASRLQSSRQRVGELERTLSTVSTQQKQAdrynkDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAE-KA 285
Cdd:COG3206   242 LAALRAQLGSGPDALPELLQSPVIQQLRAQLA-----ELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRiLA 316
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1676318480 286 AAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHV-SQLMESLKQLQVERDQYAENLK 357
Cdd:COG3206   317 SLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELyESLLQRLEEARLAEALTVGNVR 389
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
130-510 6.45e-04

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 43.47  E-value: 6.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 130 KQLSSTIEELKQQ-NQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQ---TIGILVSEKAELQTALAHTQQAARQKAG 205
Cdd:TIGR04523 291 NQLKSEISDLNNQkEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQlneQISQLKKELTNSESENSEKQRELEEKQN 370
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 206 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKA 285
Cdd:TIGR04523 371 EIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDS 450
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 286 AAQLGVEELQKKlemselllqqfssqssaaggneqlqhameeRAQLETHVSQLMESLKQLQVERDQYAENLK---GESAM 362
Cdd:TIGR04523 451 VKELIIKNLDNT------------------------------RESLETQLKVLSRSINKIKQNLEQKQKELKskeKELKK 500
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 363 WQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTgqlraq 442
Cdd:TIGR04523 501 LNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELK------ 574
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1676318480 443 vQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDrttISRALSQNRELKEQLAELQN 510
Cdd:TIGR04523 575 -QTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE---LEKAKKENEKLSSIIKNIKS 638
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
69-342 6.83e-04

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 43.50  E-value: 6.83e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480   69 EETKTFSSTESLRQLSQQL---NGLVSESTSYINGEGLTSSNMKELENRYQELAVALDSSYVTNKQLsstiEELKQQNQD 145
Cdd:PRK10929   128 EQDRAREISDSLSQLPQQQteaRRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELEL----AQLSANNRQ 203
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  146 TLDQLEKE--KKDYQQKLAKEQGsLREQLQVHIQtigilvsEKAELqtALAHTQQAARQKAGESEDLASRLQSSRQRVGE 223
Cdd:PRK10929   204 ELARLRSElaKKRSQQLDAYLQA-LRNQLNSQRQ-------REAER--ALESTELLAEQSGDLPKSIVAQFKINRELSQA 273
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  224 LE---RTLSTVSTQQKQADrynKDLTKERDALKlELYKNSK----SN---EDLRQQNSELEEKLRVLVAEKAAAQLGVee 293
Cdd:PRK10929   274 LNqqaQRMDLIASQQRQAA---SQTLQVRQALN-TLREQSQwlgvSNalgEALRAQVARLPEMPKPQQLDTEMAQLRV-- 347
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1676318480  294 lqKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEE--RAQLETHvSQLMESL 342
Cdd:PRK10929   348 --QRLRYEDLLNKQPQLRQIRQADGQPLTAEQNRilDAQLRTQ-RELLNSL 395
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
415-644 9.01e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 43.08  E-value: 9.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 415 SEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLShlnreqegrllelereaqrwseQAEERKQILESMQSDRTTISRA 494
Cdd:COG3206   174 RKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVD----------------------LSEEAKLLLQQLSELESQLAEA 231
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 495 LSQNRELKEQLAELQNgfvRLTNENMEITSALQSEqhVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSH 574
Cdd:COG3206   232 RAELAEAEARLAALRA---QLGSGPDALPELLQSP--VIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ 306
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1676318480 575 LQQYAAAYQQHL-AAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMA---AELARQELQEAQERLKATSQE 644
Cdd:COG3206   307 LQQEAQRILASLeAELEALQAREASLQAQLAQLEARLAELPELEAELRRLereVEVARELYESLLQRLEEARLA 380
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
206-819 1.02e-03

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 43.11  E-value: 1.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 206 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRynkdlTKERDALKLELYKNSKSN-EDLRQQNSELEEKLRVLVAEK 284
Cdd:PRK02224  200 EEKDLHERLNGLESELAELDEEIERYEEQREQARE-----TRDEADEVLEEHEERREElETLEAEIEDLRETIAETERER 274
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 285 AAAQLGVEELQKKLEmsELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQY---AENLKGESA 361
Cdd:PRK02224  275 EELAEEVRDLRERLE--ELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHneeAESLREDAD 352
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 362 MWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGpsEAEEQLQGEVEQLHKELERLTGQLRA 441
Cdd:PRK02224  353 DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP--VDLGNAEDFLEELREERDELREREAE 430
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 442 QVQDNESLShlNREQEGRLLeleREAQRWSE--QAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTnen 519
Cdd:PRK02224  431 LEATLRTAR--ERVEEAEAL---LEAGKCPEcgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE--- 502
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 520 meitSALQSEQHVKKeLARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAI 599
Cdd:PRK02224  503 ----DLVEAEDRIER-LEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAEL 577
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 600 HKQLLLQTQLMDQLQHEEVQGKMAAElARQELQEAQERLKATSQENQQLQAQLSLLVLPgegdvdqeeedeevpQSSLAi 679
Cdd:PRK02224  578 NSKLAELKERIESLERIRTLLAAIAD-AEDEIERLREKREALAELNDERRERLAEKRER---------------KRELE- 640
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 680 pEDLDsrEAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLEkeavvprnvddsaseesnqalhvame 759
Cdd:PRK02224  641 -AEFD--EARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELE-------------------------- 691
                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 760 klqsrflevmqEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEE 819
Cdd:PRK02224  692 -----------ELEELRERREALENRVEALEALYDEAEELESMYGDLRAELRQRNVETLE 740
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
109-603 1.03e-03

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 43.24  E-value: 1.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  109 KELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKkDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAE 188
Cdd:pfam01576   71 QELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEE-AARQKLQLEKVTTEAKIKKLEEDILLLEDQNSK 149
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  189 LQ---TALAHTQQAARQKAGESEDLASRLQSSRQRvgeLERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNED 265
Cdd:pfam01576  150 LSkerKLLEERISEFTSNLAEEEEKAKSLSKLKNK---HEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAE 226
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  266 LRQQNSELEEKLRVLVAEKAAAQLGVEElqKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQL 345
Cdd:pfam01576  227 LQAQIAELRAQLAKKEEELQAALARLEE--ETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEAL 304
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  346 QVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEP--PPPEPPAGPSEAEEQLQG 423
Cdd:pfam01576  305 KTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQleQAKRNKANLEKAKQALES 384
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  424 EVEQLHKELERLTGQlraqVQDNEslsHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRAL-------- 495
Cdd:pfam01576  385 ENAELQAELRTLQQA----KQDSE---HKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLneaegkni 457
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  496 ----------SQNRELKEQLAE-------LQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKS 558
Cdd:pfam01576  458 klskdvssleSQLQDTQELLQEetrqklnLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDA 537
                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*
gi 1676318480  559 QEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQL 603
Cdd:pfam01576  538 GTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQEL 582
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
116-401 1.05e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 43.02  E-value: 1.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  116 QELAVALDSSyvtNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKL--AKEQGSLREQLQ---------VHIQTIGILVS 184
Cdd:COG3096    824 GHLAVAFAPD---PEAELAALRQRRSELERELAQHRAQEQQLRQQLdqLKEQLQLLNKLLpqanlladeTLADRLEELRE 900
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  185 EKAELQTALAHTQQAARQkAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSksnE 264
Cdd:COG3096    901 ELDAAQEAQAFIQQHGKA-LAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDA---V 976
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  265 DLRQQNSELEEKLR--VLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESl 342
Cdd:COG3096    977 GLLGENSDLNEKLRarLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEELGVQADAEAEE- 1055
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1676318480  343 kQLQVERDQyaenLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQ 401
Cdd:COG3096   1056 -RARIRRDE----LHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQ 1109
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
252-613 1.19e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 42.73  E-value: 1.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  252 LKLELyKNSKSNEDLRQQNS--ELEEKLRVLVAEKAAAQlGVEELQKKLE----MSELLLQQFSSQSSAAGGNEQLQHAM 325
Cdd:PRK10929    28 ITQEL-EQAKAAKTPAQAEIveALQSALNWLEERKGSLE-RAKQYQQVIDnfpkLSAELRQQLNNERDEPRSVPPNMSTD 105
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  326 EERAQLETHVSQLMESLKQLQVERDqyaenlkgesamwqqRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEP 405
Cdd:PRK10929   106 ALEQEILQVSSQLLEKSRQAQQEQD---------------RAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPL 170
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  406 PPPEPPAGPSEAE------EQLqgEVEQL----HKELERLTG--------QLRAQVQDNESLSHLNREQEGRlLELEREA 467
Cdd:PRK10929   171 AQAQLTALQAESAalkalvDEL--ELAQLsannRQELARLRSelakkrsqQLDAYLQALRNQLNSQRQREAE-RALESTE 247
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  468 QRWSEQAEERKQILESMQSDRtTISRALSQNRELKEQLAELQNgfvRLTNENMEITSALQS--EQHVKKELARKLGE-LQ 544
Cdd:PRK10929   248 LLAEQSGDLPKSIVAQFKINR-ELSQALNQQAQRMDLIASQQR---QAASQTLQVRQALNTlrEQSQWLGVSNALGEaLR 323
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1676318480  545 ---ERLGELKETVELKSQEAQgLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAI-HKQLLLQTQLMDQL 613
Cdd:PRK10929   324 aqvARLPEMPKPQQLDTEMAQ-LRVQRLRYEDLLNKQPQLRQIRQADGQPLTAEQNRIlDAQLRTQRELLNSL 395
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
312-508 1.65e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 41.67  E-value: 1.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 312 SSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGEsamwQQRVQQMAEQVHTLKEEKEHRERQVQEL 391
Cdd:COG4942    13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL----ERRIAALARRIRALEQELAALEAELAEL 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 392 ETSLAALRSQMEEPPPPEPP--------------------AGPSEAE---EQLQGEVEQLHKELERLTGQLRAQVQDNES 448
Cdd:COG4942    89 EKEIAELRAELEAQKEELAEllralyrlgrqpplalllspEDFLDAVrrlQYLKYLAPARREQAEELRADLAELAALRAE 168
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 449 LSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAEL 508
Cdd:COG4942   169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
467-644 1.95e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 41.67  E-value: 1.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 467 AQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQER 546
Cdd:COG4942    19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 547 LGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAEL 626
Cdd:COG4942    99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
                         170
                  ....*....|....*...
gi 1676318480 627 ARQELQEAQERLKATSQE 644
Cdd:COG4942   179 LLAELEEERAALEALKAE 196
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
118-344 2.48e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 41.29  E-value: 2.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 118 LAVALDSSYVTNKQLSSTIEELKQQnqdtLDQLEKEkkdyQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQ 197
Cdd:COG4942    11 LALAAAAQADAAAEAEAELEQLQQE----IAELEKE----LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 198 QAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQK-----------QADR---YNKDLTKERDALKLELYKNSKSN 263
Cdd:COG4942    83 AELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPlalllspedflDAVRrlqYLKYLAPARREQAEELRADLAEL 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 264 EDLRQQNSELEEKLRVLVAEKAAAQlgvEELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLK 343
Cdd:COG4942   163 AALRAELEAERAELEALLAELEEER---AALEALKAERQKLLARLEKELAEL--AAELAELQQEAEELEALIARLEAEAA 237

                  .
gi 1676318480 344 Q 344
Cdd:COG4942   238 A 238
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
137-375 2.61e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 41.86  E-value: 2.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  137 EELKQQNQDTLDQLEKEKKDYQQKL------------------------------------------AKEQG------SL 168
Cdd:COG3096    381 EARLEAAEEEVDSLKSQLADYQQALdvqqtraiqyqqavqalekaralcglpdltpenaedylaafrAKEQQateevlEL 460
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  169 REQLQV-------HIQTIGILVSEKAELQTALAHtqQAARQ---KAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQA 238
Cdd:COG3096    461 EQKLSVadaarrqFEKAYELVCKIAGEVERSQAW--QTAREllrRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLL 538
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  239 DRYNKDLTKERDAlklelyknsksNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSS-------- 310
Cdd:COG3096    539 EEFCQRIGQQLDA-----------AEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAArapawlaa 607
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1676318480  311 QSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENlkgesamwQQRVQQMAEQVH 375
Cdd:COG3096    608 QDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAAR--------KQALESQIERLS 664
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
364-588 2.77e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.82  E-value: 2.77e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  364 QQRVQQMAEQVHTLKEEKEHRER------QVQELETSLAALRSQMEEPPPPEPPagpsEAEEQLQGEVEQLHKELERLTG 437
Cdd:COG4913    241 HEALEDAREQIELLEPIRELAERyaaareRLAELEYLRAALRLWFAQRRLELLE----AELEELRAELARLEAELERLEA 316
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  438 QLRAQVQDNESLSHLNREQEGRLLE-LEREAQRWSEQAEERKQilesmqsdrttisralsqnrelkeQLAELQNGFVRLT 516
Cdd:COG4913    317 RLDALREELDELEAQIRGNGGDRLEqLEREIERLERELEERER------------------------RRARLEALLAALG 372
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1676318480  517 NENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAA 588
Cdd:COG4913    373 LPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLA 444
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
107-453 2.78e-03

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 461677 [Multi-domain]  Cd Length: 660  Bit Score: 41.65  E-value: 2.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 107 NMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLdqlekEKKDYQQKLA------KEQGSLRE---QLQVHIQ 177
Cdd:pfam05557 147 KASEAEQLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSE-----IVKNSKSELAripeleKELERLREhnkHLNENIE 221
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 178 TIGILVSEKAELQTALAHTQQAARQKAG---------------------------ESEDLASRLQSSRQRVGELERTLST 230
Cdd:pfam05557 222 NKLLLKEEVEDLKRKLEREEKYREEAATlelekekleqelqswvklaqdtglnlrSPEDLSRRIEQLQQREIVLKEENSS 301
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 231 VSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSS 310
Cdd:pfam05557 302 LTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLER 381
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 311 QSSAAGGNEQLQ-HAMEERAQLE------THVSQLMESLKQ-LQVERDQYAENlkgESAMWQQRVQQMAEQVHTLKEEKE 382
Cdd:pfam05557 382 IEEAEDMTQKMQaHNEEMEAQLSvaeeelGGYKQQAQTLEReLQALRQQESLA---DPSYSKEEVDSLRRKLETLELERQ 458
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1676318480 383 HRERQVQELETSLAALRSQ----MEEPPPPEPPAGP-SEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLN 453
Cdd:pfam05557 459 RLREQKNELEMELERRCLQgdydPKKTKVLHLSMNPaAEAYQQRKNQLEKLQAEIERLKRLLKKLEDDLEQVLRLP 534
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
109-297 2.98e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 41.59  E-value: 2.98e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  109 KELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQlEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAE 188
Cdd:TIGR02169  808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ-IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  189 LQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNK-------------DLTKERDALKLE 255
Cdd:TIGR02169  887 LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGedeeipeeelsleDVQAELQRVEEE 966
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1676318480  256 LYKNSKSN-------EDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKK 297
Cdd:TIGR02169  967 IRALEPVNmlaiqeyEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
125-562 3.01e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 41.54  E-value: 3.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 125 SYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQ---TIGILVSEKAELQTALAHTQQAAR 201
Cdd:TIGR04523  20 SYVGYKNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNsnnKIKILEQQIKDLNDKLKKNKDKIN 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 202 QKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLV 281
Cdd:TIGR04523 100 KLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLE 179
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 282 AEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGG-NEQLQHAMEERAQLETHVSQLMESLKQLQVE---RDQYAENLK 357
Cdd:TIGR04523 180 KEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSlESQISELKKQNNQLKDNIEKKQQEINEKTTEisnTQTQLNQLK 259
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 358 GESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEeppppeppagpSEAEEQLQGEVEQLHKELERLTG 437
Cdd:TIGR04523 260 DEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE-----------QDWNKELKSELKNQEKKLEEIQN 328
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 438 QLRaqvQDNESLSHLNRE---QEGRLLELEREAQRWSEQAEERKQILESMQSDrttISRALSQNRELKEQLAELQNGFVR 514
Cdd:TIGR04523 329 QIS---QNNKIISQLNEQisqLKKELTNSESENSEKQRELEEKQNEIEKLKKE---NQSYKQEIKNLESQINDLESKIQN 402
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*....
gi 1676318480 515 LTNENMEITSALQSEQHVKKELARKLGELQERLGELKETV-ELKSQEAQ 562
Cdd:TIGR04523 403 QEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIkDLTNQDSV 451
PRK11281 PRK11281
mechanosensitive channel MscK;
129-644 3.38e-03

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 41.44  E-value: 3.38e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  129 NKQLSSTIEELKQQNQDTLDQLEKeKKDYQQKLAKeqgsLREQLQvhiqtigilvsekaelqtalahtqqaarqkagese 208
Cdd:PRK11281    51 QKLLEAEDKLVQQDLEQTLALLDK-IDRQKEETEQ----LKQQLA----------------------------------- 90
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  209 dlasrlqssrqrvgelertlstvstqqkQADRYNKDLTKERDALKlelyknSKSNEDLRQQNSeleeklrvlvaekaaaQ 288
Cdd:PRK11281    91 ----------------------------QAPAKLRQAQAELEALK------DDNDEETRETLS----------------T 120
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  289 LGVEELQKKLEmsELLLQQFSSQSSAAGGNEQL--QHAMEERAQlethvSQLMESlkqlqverdqyaenlkgesamwQQR 366
Cdd:PRK11281   121 LSLRQLESRLA--QTLDQLQNAQNDLAEYNSQLvsLQTQPERAQ-----AALYAN----------------------SQR 171
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  367 VQQMAEQVHTLKEEKEH-RERQVQELETSLAALRSQMEEPPPPEppagpsEAEEQLQGEVEQLHKELERLTGQLRAQVQD 445
Cdd:PRK11281   172 LQQIRNLLKGGKVGGKAlRPSQRVLLQAEQALLNAQNDLQRKSL------EGNTQLQDLLQKQRDYLTARIQRLEHQLQL 245
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  446 NESLshLNREqegRLLELEREAQrwseQAEERKQILESMQSDrtTISRALSQNRELKEQLAELQNGFVRLTNENMEIT-- 523
Cdd:PRK11281   246 LQEA--INSK---RLTLSEKTVQ----EAQSQDEAARIQANP--LVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKnw 314
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  524 --SALQSEQHVKKE---------LARKLGELQERLGELKETVELKSQEAQ------GLQEQRDQcLSHLQQYAAAYQQHl 586
Cdd:PRK11281   315 ldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLADRIADlrleqfEINQQRDA-LFQPDAYIDKLEAG- 392
                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1676318480  587 aayeQLTSEKEAIHKQL--LLQT--QLMDQLQHEEVQGKMAA---ELARQELQEAQERLKATSQE 644
Cdd:PRK11281   393 ----HKSEVTDEVRDALlqLLDErrELLDQLNKQLNNQLNLAinlQLNQQQLLSVSDSLQSTLTQ 453
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
202-633 3.58e-03

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 41.25  E-value: 3.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 202 QKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLR-----------QQN 270
Cdd:pfam05483 251 EKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEedlqiatkticQLT 330
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 271 SELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQqfSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERD 350
Cdd:pfam05483 331 EEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLR--TEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELE 408
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 351 QYAENLKGESAMW--QQRVQQMAEQVHTLKEE----KEHRERQVQELETSLAALRSqmeeppppeppagpseAEEQLQGE 424
Cdd:pfam05483 409 ELKKILAEDEKLLdeKKQFEKIAEELKGKEQEliflLQAREKEIHDLEIQLTAIKT----------------SEEHYLKE 472
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 425 VEQLHKELErltgqlRAQVQDNESLSHLNReqegRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQ 504
Cdd:pfam05483 473 VEDLKTELE------KEKLKNIELTAHCDK----LLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEK 542
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 505 LAELQNGFvrltnenmeitsalqseQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQ 584
Cdd:pfam05483 543 EMNLRDEL-----------------ESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIEN 605
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*....
gi 1676318480 585 HLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQE 633
Cdd:pfam05483 606 KNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEE 654
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
419-735 3.81e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 41.21  E-value: 3.81e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  419 EQLQGEVEQLHKELERLTGQLRAQVQDNESLSHlNREQEGRLLELEREAQRWseqaeERKQILESMQSDRTTISRALSQN 498
Cdd:TIGR02169  173 EKALEELEEVEENIERLDLIIDEKRQQLERLRR-EREKAERYQALLKEKREY-----EGYELLKEKEALERQKEAIERQL 246
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  499 RELKEQLAELQngfVRLTNENMEITSALQSEQHVKKELARKLGELQERLGElkETVELKSQEAQgLQEQRDQCLSHLQQY 578
Cdd:TIGR02169  247 ASLEEELEKLT---EEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE--KIGELEAEIAS-LERSIAEKERELEDA 320
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  579 AAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQQLQAQLSLLVLP 658
Cdd:TIGR02169  321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676318480  659 GEGDVDQEEEDEevpqsslaipEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLEKE 735
Cdd:TIGR02169  401 INELKRELDRLQ----------EELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467
HEC1 COG5185
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ...
228-549 4.50e-03

Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444066 [Multi-domain]  Cd Length: 594  Bit Score: 40.71  E-value: 4.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 228 LSTVSTQQKQADryNKDLTKERDALKLELYKNSKSNEDLRQQN-SELEEKLRVLVAEKAAAQLGVEELQKKLEMSElllQ 306
Cdd:COG5185   229 INIEEALKGFQD--PESELEDLAQTSDKLEKLVEQNTDLRLEKlGENAESSKRLNENANNLIKQFENTKEKIAEYT---K 303
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 307 QFSSQSSAAGGNEQLQhAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGEsamwQQRVQQMAEQVHTLkEEKEHRER 386
Cdd:COG5185   304 SIDIKKATESLEEQLA-AAEAEQELEESKRETETGIQNLTAEIEQGQESLTEN----LEAIKEEIENIVGE-VELSKSSE 377
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 387 QVQELETSLAALRSQMEEPPPPEPPAGPsEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELERE 466
Cdd:COG5185   378 ELDSFKDTIESTKESLDEIPQNQRGYAQ-EILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMRE 456
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 467 AQ--RWSEQAEERKQILESMQSDRTTISRALSQ-NRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGEL 543
Cdd:COG5185   457 ADeeSQSRLEEAYDEINRSVRSKKEDLNEELTQiESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFMRARGYA 536

                  ....*.
gi 1676318480 544 QERLGE 549
Cdd:COG5185   537 HILALE 542
PLN02939 PLN02939
transferase, transferring glycosyl groups
55-387 4.58e-03

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 41.04  E-value: 4.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  55 PENSHDAGNCSNLMEETKTFSSteSLRQLSQqlngLVSESTSYINGEGLTSSNMKE--LENRYQELAVALDSSYVTNKQL 132
Cdd:PLN02939   57 KQRSSNSKLQSNTDENGQLENT--SLRTVME----LPQKSTSSDDDHNRASMQRDEaiAAIDNEQQTNSKDGEQLSDFQL 130
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 133 SSTIEELK--QQNQDTLDQLEKEKKDYQQKLAKEqgslREQLQVHIQTIGILVSE-KAELQTAL---AHTQQAARQKAGE 206
Cdd:PLN02939  131 EDLVGMIQnaEKNILLLNQARLQALEDLEKILTE----KEALQGKINILEMRLSEtDARIKLAAqekIHVEILEEQLEKL 206
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 207 SEDLASRLQSSRQRVGELERTLSTVSTQqkqadryNKDLTKERDALKLELYKNSKSNED---LRQQNSELEEKLRVLVAE 283
Cdd:PLN02939  207 RNELLIRGATEGLCVHSLSKELDVLKEE-------NMLLKDDIQFLKAELIEVAETEERvfkLEKERSLLDASLRELESK 279
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 284 KAAAQ--------LGVEELQKKLEMSELLLQQFSSQSSAA----GGNEQLQHAME--ERAQLETHVSQ--------LMES 341
Cdd:PLN02939  280 FIVAQedvsklspLQYDCWWEKVENLQDLLDRATNQVEKAalvlDQNQDLRDKVDklEASLKEANVSKfssykvelLQQK 359
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1676318480 342 LKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQ 387
Cdd:PLN02939  360 LKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLE 405
mukB PRK04863
chromosome partition protein MukB;
214-478 5.48e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 40.71  E-value: 5.48e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  214 LQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDAL-KLELYKNSKSNEDLRQQNSELEEKL-RVLVAEKAAAQLGV 291
Cdd:PRK04863   839 LRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALnRLLPRLNLLADETLADRVEEIREQLdEAEEAKRFVQQHGN 918
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  292 -------------------EELQKKLEMSELLLQQFSSQSSA---------AGGNEQLQHAMEERAQLethVSQLMESLK 343
Cdd:PRK04863   919 alaqlepivsvlqsdpeqfEQLKQDYQQAQQTQRDAKQQAFAltevvqrraHFSYEDAAEMLAKNSDL---NEKLRQRLE 995
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  344 QLQVERDQYAENLKGEsamwQQRVQQmAEQVHT-LKEEKEHRERQVQELETSLAALRSQmeeppppeppaGPSEAEEQLQ 422
Cdd:PRK04863   996 QAEQERTRAREQLRQA----QAQLAQ-YNQVLAsLKSSYDAKRQMLQELKQELQDLGVP-----------ADSGAEERAR 1059
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1676318480  423 GEVEQLHKELeRLTGQLRAQVQDNESLSHLN-REQEGRLLELEREAQRWSEQAEERK 478
Cdd:PRK04863  1060 ARRDELHARL-SANRSRRNQLEKQLTFCEAEmDNLTKKLRKLERDYHEMREQVVNAK 1115
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
168-613 7.63e-03

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


Pssm-ID: 444019 [Multi-domain]  Cd Length: 711  Bit Score: 39.95  E-value: 7.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 168 LREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTK 247
Cdd:COG4995     8 ALLAALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALAL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 248 ERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEE 327
Cdd:COG4995    88 ALLAAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLA 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 328 RAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPP 407
Cdd:COG4995   168 LALALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAA 247
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 408 PEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSD 487
Cdd:COG4995   248 AALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLL 327
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 488 RTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQ 567
Cdd:COG4995   328 AALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQ 407
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 1676318480 568 RDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIH--KQLLLQTQLMDQL 613
Cdd:COG4995   408 LLRLLLAALALLLALAAYAAARLALLALIEYIIlpDRLYAFVQLYQLL 455
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
80-287 7.66e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 39.75  E-value: 7.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480  80 LRQLSQQLNGLVSESTSYINGEGLTSSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQ 159
Cdd:COG4942    29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318480 160 KLAKEQGSLRE---QLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQK 236
Cdd:COG4942   109 LLRALYRLGRQpplALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERA 188
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1676318480 237 QADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAA 287
Cdd:COG4942   189 ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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