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Conserved domains on  [gi|1372102641|ref|NP_001348653|]
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Vesicle transport protein [Caenorhabditis elegans]

Protein Classification

Got1/Sft2-like family vesicle transport protein( domain architecture ID 6026)

Got1/Sft2-like family vesicle transport protein such as Homo sapiens vesicle transport protein GOT1A, which may be involved in fusion of ER-derived transport vesicles with the Golgi complex

Gene Ontology:  GO:0015031|GO:0006888
PubMed:  10406798

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Got1 super family cl02130
Got1/Sft2-like family; Traffic through the yeast Golgi complex depends on a member of the ...
 81-187 4.15e-12

Got1/Sft2-like family; Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments.


The actual alignment was detected with superfamily member COG5102:

Pssm-ID: 470475  Cd Length: 201  Bit Score: 61.86  E-value: 4.15e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372102641  81 STQDESMFGMTRTQRIIAFFMCIIGAIFCFSTAAVLIPVILVSTRKFAGLNTLGSLLLLLSFAFLLGPKSYLTHMASPQR 160
Cdd:COG5102    53 HYFQSSEFGLSRFERAVLFSACLLGAGACSAFLYFMFPVLRLKPRKFILLWTMGSLLFVLMFGFLLGFRAYLEGLTSKER 132

                          90       100
                  ....*....|....*....|....*..
gi 1372102641 161 RLVTVSYLSALFATLYSSLWVRALVCS 187
Cdd:COG5102   133 LPHSSWFFGTTLLTIYVVLKYKRTLLN 159
 
Name Accession Description Interval E-value
SFT2 COG5102
Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion];
81-187 4.15e-12

Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion];


Pssm-ID: 227433  Cd Length: 201  Bit Score: 61.86  E-value: 4.15e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372102641  81 STQDESMFGMTRTQRIIAFFMCIIGAIFCFSTAAVLIPVILVSTRKFAGLNTLGSLLLLLSFAFLLGPKSYLTHMASPQR 160
Cdd:COG5102    53 HYFQSSEFGLSRFERAVLFSACLLGAGACSAFLYFMFPVLRLKPRKFILLWTMGSLLFVLMFGFLLGFRAYLEGLTSKER 132

                          90       100
                  ....*....|....*....|....*..
gi 1372102641 161 RLVTVSYLSALFATLYSSLWVRALVCS 187
Cdd:COG5102   133 LPHSSWFFGTTLLTIYVVLKYKRTLLN 159
Got1 pfam04178
Got1/Sft2-like family; Traffic through the yeast Golgi complex depends on a member of the ...
 96-182 8.02e-12

Got1/Sft2-like family; Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments.


Pssm-ID: 461210  Cd Length: 110  Bit Score: 59.04  E-value: 8.02e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372102641  96 IIAFFMCIIGAIFCFSTAAVLIpvILVSTRKFAGLNTLGSLLLLLSFAFLLGPKSYLTHMASPQRRLVTVSYLSALFATL 175
Cdd:pfam04178   1 LIGFGICLLLGVLCFFLSFFLF--VLAKPRKFALLYTLGNILFLGSTGFLIGPKKQLKHMFSKERLPFTIAYLGSLLLTL 78


                  ....*..
gi 1372102641 176 YSSLWVR 182
Cdd:pfam04178  79 YFALILK 85
 
Name Accession Description Interval E-value
SFT2 COG5102
Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion];
81-187 4.15e-12

Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion];


Pssm-ID: 227433  Cd Length: 201  Bit Score: 61.86  E-value: 4.15e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372102641  81 STQDESMFGMTRTQRIIAFFMCIIGAIFCFSTAAVLIPVILVSTRKFAGLNTLGSLLLLLSFAFLLGPKSYLTHMASPQR 160
Cdd:COG5102    53 HYFQSSEFGLSRFERAVLFSACLLGAGACSAFLYFMFPVLRLKPRKFILLWTMGSLLFVLMFGFLLGFRAYLEGLTSKER 132

                          90       100
                  ....*....|....*....|....*..
gi 1372102641 161 RLVTVSYLSALFATLYSSLWVRALVCS 187
Cdd:COG5102   133 LPHSSWFFGTTLLTIYVVLKYKRTLLN 159
Got1 pfam04178
Got1/Sft2-like family; Traffic through the yeast Golgi complex depends on a member of the ...
 96-182 8.02e-12

Got1/Sft2-like family; Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments.


Pssm-ID: 461210  Cd Length: 110  Bit Score: 59.04  E-value: 8.02e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372102641  96 IIAFFMCIIGAIFCFSTAAVLIpvILVSTRKFAGLNTLGSLLLLLSFAFLLGPKSYLTHMASPQRRLVTVSYLSALFATL 175
Cdd:pfam04178   1 LIGFGICLLLGVLCFFLSFFLF--VLAKPRKFALLYTLGNILFLGSTGFLIGPKKQLKHMFSKERLPFTIAYLGSLLLTL 78


                  ....*..
gi 1372102641 176 YSSLWVR 182
Cdd:pfam04178  79 YFALILK 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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