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Conserved domains on  [gi|1254002633|ref|NP_001343722|]
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C-CAP/cofactor C-like domain-containing protein [Caenorhabditis elegans]

Protein Classification

TBCC domain-containing protein( domain architecture ID 1006203)

TBCC (Tubulin binding cofactor C) domain-containing protein similar to Saccharomyces cerevisiae tubulin-specific chaperone C, which is a tubulin-folding protein involved in the early step of the tubulin folding pathway

Gene Ontology:  GO:0007023

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TBCC super family cl29757
Tubulin binding cofactor C; Members of this family are involved in the folding pathway of ...
 6-69 5.64e-13

Tubulin binding cofactor C; Members of this family are involved in the folding pathway of tubulins and form a beta helix structure.


The actual alignment was detected with superfamily member pfam07986:

Pssm-ID: 475252  Cd Length: 119  Bit Score: 62.23  E-value: 5.64e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1254002633   6 IVLGAVRGIVIVKNCQSTRISVSCDQLIVLDSKNIEIYAMSPKKPIIFNSSAVTFAPFNTIYEG 69
Cdd:pfam07986  33 IFLGPVSGSVFIRDCENCTIVVACRQLRIHDCTNCDFYLHTTSRPIIEDSTGIRFAPYNTSYPG 96
 
Name Accession Description Interval E-value
TBCC pfam07986
Tubulin binding cofactor C; Members of this family are involved in the folding pathway of ...
 6-69 5.64e-13

Tubulin binding cofactor C; Members of this family are involved in the folding pathway of tubulins and form a beta helix structure.


Pssm-ID: 462331  Cd Length: 119  Bit Score: 62.23  E-value: 5.64e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1254002633   6 IVLGAVRGIVIVKNCQSTRISVSCDQLIVLDSKNIEIYAMSPKKPIIFNSSAVTFAPFNTIYEG 69
Cdd:pfam07986  33 IFLGPVSGSVFIRDCENCTIVVACRQLRIHDCTNCDFYLHTTSRPIIEDSTGIRFAPYNTSYPG 96
 
Name Accession Description Interval E-value
TBCC pfam07986
Tubulin binding cofactor C; Members of this family are involved in the folding pathway of ...
 6-69 5.64e-13

Tubulin binding cofactor C; Members of this family are involved in the folding pathway of tubulins and form a beta helix structure.


Pssm-ID: 462331  Cd Length: 119  Bit Score: 62.23  E-value: 5.64e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1254002633   6 IVLGAVRGIVIVKNCQSTRISVSCDQLIVLDSKNIEIYAMSPKKPIIFNSSAVTFAPFNTIYEG 69
Cdd:pfam07986  33 IFLGPVSGSVFIRDCENCTIVVACRQLRIHDCTNCDFYLHTTSRPIIEDSTGIRFAPYNTSYPG 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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