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Conserved domains on  [gi|1972297541|ref|NP_001343580|]
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protein of unknown function WSN domain-containing protein [Caenorhabditis elegans]

Protein Classification

WSN and PspC_subgroup_2 domain-containing protein( domain architecture ID 10648612)

WSN and PspC_subgroup_2 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WSN smart00453
Worm-specific (usually) N-terminal domain;
57-122 3.86e-14

Worm-specific (usually) N-terminal domain;


:

Pssm-ID: 197734  Cd Length: 69  Bit Score: 67.99  E-value: 3.86e-14
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1972297541   57 EDPATLFEKLPAVARLVTAIAIINGFSDGSIPADPVIAEFFNVDTAILQQLEKFNKASVDKFVESL 122
Cdd:smart00453   1 SKLQTVIERLSMLARVTNAISLQAGLINGSIPIDDVIAELLNIDSSKLSDIINVDLTKIDEGLNKL 66
 
Name Accession Description Interval E-value
WSN smart00453
Worm-specific (usually) N-terminal domain;
57-122 3.86e-14

Worm-specific (usually) N-terminal domain;


Pssm-ID: 197734  Cd Length: 69  Bit Score: 67.99  E-value: 3.86e-14
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1972297541   57 EDPATLFEKLPAVARLVTAIAIINGFSDGSIPADPVIAEFFNVDTAILQQLEKFNKASVDKFVESL 122
Cdd:smart00453   1 SKLQTVIERLSMLARVTNAISLQAGLINGSIPIDDVIAELLNIDSSKLSDIINVDLTKIDEGLNKL 66
WSN pfam02206
Domain of unknown function;
58-123 2.32e-13

Domain of unknown function;


Pssm-ID: 426657  Cd Length: 66  Bit Score: 65.55  E-value: 2.32e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1972297541  58 DPATLFEKLPAVARLVTAIAIINGFSDGSIPADPVIAEFFNVDTAILQQLEKFNKASVDKFVESLN 123
Cdd:pfam02206   1 NLSLIVEKLSILARITNAISLQAGLIDGSIPVDDVISELLNLGSVTLSDIIKIDVDKLKELLEKLK 66
 
Name Accession Description Interval E-value
WSN smart00453
Worm-specific (usually) N-terminal domain;
57-122 3.86e-14

Worm-specific (usually) N-terminal domain;


Pssm-ID: 197734  Cd Length: 69  Bit Score: 67.99  E-value: 3.86e-14
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1972297541   57 EDPATLFEKLPAVARLVTAIAIINGFSDGSIPADPVIAEFFNVDTAILQQLEKFNKASVDKFVESL 122
Cdd:smart00453   1 SKLQTVIERLSMLARVTNAISLQAGLINGSIPIDDVIAELLNIDSSKLSDIINVDLTKIDEGLNKL 66
WSN pfam02206
Domain of unknown function;
58-123 2.32e-13

Domain of unknown function;


Pssm-ID: 426657  Cd Length: 66  Bit Score: 65.55  E-value: 2.32e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1972297541  58 DPATLFEKLPAVARLVTAIAIINGFSDGSIPADPVIAEFFNVDTAILQQLEKFNKASVDKFVESLN 123
Cdd:pfam02206   1 NLSLIVEKLSILARITNAISLQAGLIDGSIPVDDVISELLNLGSVTLSDIIKIDVDKLKELLEKLK 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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