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Conserved domains on  [gi|1254049404|ref|NP_001343572|]
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PAN-3 domain-containing protein [Caenorhabditis elegans]

Protein Classification

CW domain-containing protein( domain architecture ID 10652029)

CW domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CW smart00605
CW domain;
34-114 5.22e-21

CW domain;


:

Pssm-ID: 214742  Cd Length: 94  Bit Score: 85.56  E-value: 5.22e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254049404   34 YSMIVTYGRPTNFSSSIPNSAPTWNDCVVQCYISNTCVLAYSPaSPIKCQLFNVNRVFVVEKLQASDDQFVAFKTVKSEV 113
Cdd:smart00605   1 VKMVLIYGKPTTSSSSVTAATLSWDECIQKCYEDSNCVLAYGN-SSETCYLFSYGTVLTVKKLSSSSGKKVAFKVSTDQP 79

                   .
gi 1254049404  114 T 114
Cdd:smart00605  80 S 80
 
Name Accession Description Interval E-value
CW smart00605
CW domain;
34-114 5.22e-21

CW domain;


Pssm-ID: 214742  Cd Length: 94  Bit Score: 85.56  E-value: 5.22e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254049404   34 YSMIVTYGRPTNFSSSIPNSAPTWNDCVVQCYISNTCVLAYSPaSPIKCQLFNVNRVFVVEKLQASDDQFVAFKTVKSEV 113
Cdd:smart00605   1 VKMVLIYGKPTTSSSSVTAATLSWDECIQKCYEDSNCVLAYGN-SSETCYLFSYGTVLTVKKLSSSSGKKVAFKVSTDQP 79

                   .
gi 1254049404  114 T 114
Cdd:smart00605  80 S 80
PAN_3 pfam08277
PAN-like domain;
36-108 2.95e-14

PAN-like domain;


Pssm-ID: 429894  Cd Length: 71  Bit Score: 66.61  E-value: 2.95e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1254049404  36 MIVTYGRPTNFSSSIPNSAPTWNDCVVQCYISNTCVLAYSPASpiKCQLFNVNRVFVVEKLQASDDQFVAFKT 108
Cdd:pfam08277   1 MVLIYGEPEDYYSTSSTTSESWDDCVTKCYEDSTCVLAYFNSE--NCYLFSIGNVSTVKKIESSSGSKVAFKI 71
 
Name Accession Description Interval E-value
CW smart00605
CW domain;
34-114 5.22e-21

CW domain;


Pssm-ID: 214742  Cd Length: 94  Bit Score: 85.56  E-value: 5.22e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254049404   34 YSMIVTYGRPTNFSSSIPNSAPTWNDCVVQCYISNTCVLAYSPaSPIKCQLFNVNRVFVVEKLQASDDQFVAFKTVKSEV 113
Cdd:smart00605   1 VKMVLIYGKPTTSSSSVTAATLSWDECIQKCYEDSNCVLAYGN-SSETCYLFSYGTVLTVKKLSSSSGKKVAFKVSTDQP 79

                   .
gi 1254049404  114 T 114
Cdd:smart00605  80 S 80
PAN_3 pfam08277
PAN-like domain;
36-108 2.95e-14

PAN-like domain;


Pssm-ID: 429894  Cd Length: 71  Bit Score: 66.61  E-value: 2.95e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1254049404  36 MIVTYGRPTNFSSSIPNSAPTWNDCVVQCYISNTCVLAYSPASpiKCQLFNVNRVFVVEKLQASDDQFVAFKT 108
Cdd:pfam08277   1 MVLIYGEPEDYYSTSSTTSESWDDCVTKCYEDSTCVLAYFNSE--NCYLFSIGNVSTVKKIESSSGSKVAFKI 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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