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Conserved domains on  [gi|1245897678|ref|NP_001342598|]
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protein SLX4IP isoform 3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UPF0492 super family cl24343
Uncharacterized protein family UPF0492; This family of proteins is found in eukaryotes. ...
 10-51 5.24e-17

Uncharacterized protein family UPF0492; This family of proteins is found in eukaryotes. Proteins in this family are typically between 78 and 408 amino acids in length.


The actual alignment was detected with superfamily member pfam15744:

Pssm-ID: 464840  Cd Length: 359  Bit Score: 74.91  E-value: 5.24e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1245897678  10 CGNFAVLVDLHVLPQGSNRDSSWFSEQKK-EVMAFRSQLISSR 51
Cdd:pfam15744   1 CGNFAVLVDLHILPQGSNKDTSWFSEQKKeEVCLLLKETIDSR 43
 
Name Accession Description Interval E-value
UPF0492 pfam15744
Uncharacterized protein family UPF0492; This family of proteins is found in eukaryotes. ...
 10-51 5.24e-17

Uncharacterized protein family UPF0492; This family of proteins is found in eukaryotes. Proteins in this family are typically between 78 and 408 amino acids in length.


Pssm-ID: 464840  Cd Length: 359  Bit Score: 74.91  E-value: 5.24e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1245897678  10 CGNFAVLVDLHVLPQGSNRDSSWFSEQKK-EVMAFRSQLISSR 51
Cdd:pfam15744   1 CGNFAVLVDLHILPQGSNKDTSWFSEQKKeEVCLLLKETIDSR 43
 
Name Accession Description Interval E-value
UPF0492 pfam15744
Uncharacterized protein family UPF0492; This family of proteins is found in eukaryotes. ...
 10-51 5.24e-17

Uncharacterized protein family UPF0492; This family of proteins is found in eukaryotes. Proteins in this family are typically between 78 and 408 amino acids in length.


Pssm-ID: 464840  Cd Length: 359  Bit Score: 74.91  E-value: 5.24e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1245897678  10 CGNFAVLVDLHVLPQGSNRDSSWFSEQKK-EVMAFRSQLISSR 51
Cdd:pfam15744   1 CGNFAVLVDLHILPQGSNKDTSWFSEQKKeEVCLLLKETIDSR 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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