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Conserved domains on  [gi|1242862547|ref|NP_001342307|]
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coiled-coil domain-containing protein 171 isoform 1 [Mus musculus]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000095)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
58-818 5.13e-20

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 97.05  E-value: 5.13e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   58 HNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEaglgRRAAEERLAEaqrIQERLCAQNSELQGKANEIEKTfq 137
Cdd:TIGR02168  237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLE----VSELEEEIEE---LQKELYALANEISRLEQQKQIL-- 307
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  138 isqekwREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTELES--RVRETALGEFRLQTEEW 215
Cdd:TIGR02168  308 ------RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEleAELEELESRLEELEEQL 381
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  216 EAERRELQLIVQEQDSAvqsmQKKVEQLEAEHMDCSDLLRRQTSELEfsTQREERLRKEFEATTLRVRKLEENIEAERAA 295
Cdd:TIGR02168  382 ETLRSKVAQLELQIASL----NNEIERLEARLERLEDRRERLQQEIE--ELLKKLEEAELKELQAELEELEEELEELQEE 455
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  296 HLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNtqescaklnLLEREYFSQN----- 370
Cdd:TIGR02168  456 LERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKAL---------LKNQSGLSGIlgvls 526
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  371 KKLNEEIEDQKKVIIDLSKRLQY----NEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKD 446
Cdd:TIGR02168  527 ELISVDEGYEAAIEAALGGRLQAvvveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKD 606
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  447 KDK-PPSFSVVLETLRRTL---TDYQNKLEDASNELNN----------------INDAKEKTSNELDSTKQKIETHIKNT 506
Cdd:TIGR02168  607 LVKfDPKLRKALSYLLGGVlvvDDLDNALELAKKLRPGyrivtldgdlvrpggvITGGSAKTNSSILERRREIEELEEKI 686
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  507 KELQDKLTEVHKELSHLRAKCADREALITSLK----------VELQNVLHCWEKEKACAAQCESELQKLSQAFQKDSEEK 576
Cdd:TIGR02168  687 EELEEKIAELEKALAELRKELEELEEELEQLRkeleelsrqiSALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  577 LTFLHTLYQHLVAGCVLIKQPEGMLDKFswSELCAVLQENVDALIADLNRANEKISHLEYICKNKSDTMRELQQTQEDTf 656
Cdd:TIGR02168  767 EERLEEAEEELAEAEAEIEELEAQIEQL--KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL- 843
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  657 nkvaeqikaqescwQKQKKELEFQYSELLLEVQRRAQKFQEIAEKNSEKLNRIETSHEQLVRENSHFkTTLSRTQREqtc 736
Cdd:TIGR02168  844 --------------EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL-EELSEELRE--- 905
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  737 llaacalmagalcpLYSRSCALSTQRDFLQEQVNSLEL----FKLEIRTLAQALSAVDEKKQEEAKTKKKTFKGLVRVFR 812
Cdd:TIGR02168  906 --------------LESKRSELRRELEELREKLAQLELrlegLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR 971

                   ....*.
gi 1242862547  813 KGVIAI 818
Cdd:TIGR02168  972 RRLKRL 977
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
990-1246 2.49e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.90  E-value: 2.49e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  990 TQRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKsqsLQTQLNEFKHSKLITHEKFESACEELNNALLR----EQQAQML 1065
Cdd:TIGR02168  231 VLRLEELREELEELQEELKEAEEELEELTAELQE---LEEKLEELRLEVSELEEEIEELQKELYALANEisrlEQQKQIL 307
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547 1066 LNEQAQ---QLQELNYRLELHSS-------EEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEEN 1135
Cdd:TIGR02168  308 RERLANlerQLEELEAQLEELESkldelaeELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK 387
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547 1136 IRDAESALRMAAKDKECVANHMRTIENMLHKVRDQISLSRTAATRNDFTLQLPKLHLETFAMEGLQGGPEVVacQAMIKS 1215
Cdd:TIGR02168  388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL--EEALEE 465
                          250       260       270
                   ....*....|....*....|....*....|.
gi 1242862547 1216 FMDVYQLASARISTLEKEMTSHRSHIATLKS 1246
Cdd:TIGR02168  466 LREELEEAEQALDAAERELAQLQARLDSLER 496
 
Name Accession Description Interval E-value
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
58-818 5.13e-20

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 97.05  E-value: 5.13e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   58 HNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEaglgRRAAEERLAEaqrIQERLCAQNSELQGKANEIEKTfq 137
Cdd:TIGR02168  237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLE----VSELEEEIEE---LQKELYALANEISRLEQQKQIL-- 307
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  138 isqekwREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTELES--RVRETALGEFRLQTEEW 215
Cdd:TIGR02168  308 ------RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEleAELEELESRLEELEEQL 381
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  216 EAERRELQLIVQEQDSAvqsmQKKVEQLEAEHMDCSDLLRRQTSELEfsTQREERLRKEFEATTLRVRKLEENIEAERAA 295
Cdd:TIGR02168  382 ETLRSKVAQLELQIASL----NNEIERLEARLERLEDRRERLQQEIE--ELLKKLEEAELKELQAELEELEEELEELQEE 455
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  296 HLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNtqescaklnLLEREYFSQN----- 370
Cdd:TIGR02168  456 LERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKAL---------LKNQSGLSGIlgvls 526
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  371 KKLNEEIEDQKKVIIDLSKRLQY----NEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKD 446
Cdd:TIGR02168  527 ELISVDEGYEAAIEAALGGRLQAvvveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKD 606
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  447 KDK-PPSFSVVLETLRRTL---TDYQNKLEDASNELNN----------------INDAKEKTSNELDSTKQKIETHIKNT 506
Cdd:TIGR02168  607 LVKfDPKLRKALSYLLGGVlvvDDLDNALELAKKLRPGyrivtldgdlvrpggvITGGSAKTNSSILERRREIEELEEKI 686
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  507 KELQDKLTEVHKELSHLRAKCADREALITSLK----------VELQNVLHCWEKEKACAAQCESELQKLSQAFQKDSEEK 576
Cdd:TIGR02168  687 EELEEKIAELEKALAELRKELEELEEELEQLRkeleelsrqiSALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  577 LTFLHTLYQHLVAGCVLIKQPEGMLDKFswSELCAVLQENVDALIADLNRANEKISHLEYICKNKSDTMRELQQTQEDTf 656
Cdd:TIGR02168  767 EERLEEAEEELAEAEAEIEELEAQIEQL--KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL- 843
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  657 nkvaeqikaqescwQKQKKELEFQYSELLLEVQRRAQKFQEIAEKNSEKLNRIETSHEQLVRENSHFkTTLSRTQREqtc 736
Cdd:TIGR02168  844 --------------EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL-EELSEELRE--- 905
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  737 llaacalmagalcpLYSRSCALSTQRDFLQEQVNSLEL----FKLEIRTLAQALSAVDEKKQEEAKTKKKTFKGLVRVFR 812
Cdd:TIGR02168  906 --------------LESKRSELRRELEELREKLAQLELrlegLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR 971

                   ....*.
gi 1242862547  813 KGVIAI 818
Cdd:TIGR02168  972 RRLKRL 977
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
60-346 9.76e-14

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 76.51  E-value: 9.76e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   60 AELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERLcaqnSELQGKANEIEKTFQIS 139
Cdd:COG1196    232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE----YELLAELARLEQDIARL 307
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  140 QEKWREECRRFEHDLEERDNIiqncNQEYESLMQEKTRLQKTLQEILEKHEQEKTELESRvrETALGEFRLQTEEWEAER 219
Cdd:COG1196    308 EERRRELEERLEELEEELAEL----EEELEELEEELEELEEELEEAEEELEEAEAELAEA--EEALLEAEAELAEAEEEL 381
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  220 RELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLES 299
Cdd:COG1196    382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*..
gi 1242862547  300 KFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYE 346
Cdd:COG1196    462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
21-577 1.16e-08

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 59.69  E-value: 1.16e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   21 SLDVKQMLKNETE--------SDIIADLRKKLHRAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEyDLAV 92
Cdd:PRK03918   167 LGEVIKEIKRRIErlekfikrTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE-ELEK 245
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   93 ARKEAGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTfqisqEKWREECRRFEHDLEERDNIIQNCNQEYESLM 172
Cdd:PRK03918   246 ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL-----KEKAEEYIKLSEFYEEYLDELREIEKRLSRLE 320
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  173 QEKTRLQKTLQEiLEKHEQEKTELESRVRETalgefRLQTEEWEAERRELQLIVQEQDSAvQSMQKKVEQLEAEHMDcsd 252
Cdd:PRK03918   321 EEINGIEERIKE-LEEKEERLEELKKKLKEL-----EKRLEELEERHELYEEAKAKKEEL-ERLKKRLTGLTPEKLE--- 390
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  253 llrrqtSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDL----------EGALQVEKA 322
Cdd:PRK03918   391 ------KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELteehrkelleEYTAELKRI 464
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  323 SQ--AEAVADLEMIKNEFKEVESAYEREKQ------------NTQESCAKLNLLE-----REYFSQNKKLNE------EI 377
Cdd:PRK03918   465 EKelKEIEEKERKLRKELRELEKVLKKESEliklkelaeqlkELEEKLKKYNLEElekkaEEYEKLKEKLIKlkgeikSL 544
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  378 EDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFL----VETCENNVRELESILGSFSvsaqwtsgvhKDKDKPPSf 453
Cdd:PRK03918   545 KKELEKLEELKKKLAELEKKLDELEEELAELLKELEELgfesVEELEERLKELEPFYNEYL----------ELKDAEKE- 613
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  454 svvLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKI--ETHikntKELQDKLTEVHKELSHLRAKCADRE 531
Cdd:PRK03918   614 ---LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYseEEY----EELREEYLELSRELAGLRAELEELE 686
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*.
gi 1242862547  532 ALITSLKVELQNVLHcwEKEKACAAQCESELQKLSQAFQKDSEEKL 577
Cdd:PRK03918   687 KRREEIKKTLEKLKE--ELEEREKAKKELEKLEKALERVEELREKV 730
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
149-710 4.88e-08

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 57.82  E-value: 4.88e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  149 RFEHDLEERDNIIQNCNQEY-ESLMQEKTR----LQKTLQEILEKHEQEKTELESRV--RETALGEFRLQTEEWEAERRE 221
Cdd:pfam15921   56 KYEVELDSPRKIIAYPGKEHiERVLEEYSHqvkdLQRRLNESNELHEKQKFYLRQSVidLQTKLQEMQMERDAMADIRRR 135
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  222 LQlivQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEfstqreeRLRK---EFEATTLRVRKLEenIEAERAAHLE 298
Cdd:pfam15921  136 ES---QSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIE-------QLRKmmlSHEGVLQEIRSIL--VDFEEASGKK 203
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  299 SKFNSEIIQLRIRDLEGALQvekASQAEAVADLEMIKNEFKEVESAYEREKQNTQEscaKLNLLEREYfsqNKKLNEEIE 378
Cdd:pfam15921  204 IYEHDSMSTMHFRSLGSAIS---KILRELDTEISYLKGRIFPVEDQLEALKSESQN---KIELLLQQH---QDRIEQLIS 274
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  379 DQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKDKDKPPSFSVVLE 458
Cdd:pfam15921  275 EHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLA 354
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  459 TlrRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADR-------E 531
Cdd:pfam15921  355 N--SELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRnmevqrlE 432
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  532 ALITSLKVELQNVLhcwEKEKACAAQCESELQKLSqAFQKDSEEKLTFLHTLYQHLVAGCVLIKQPEGMLdkfswSELCA 611
Cdd:pfam15921  433 ALLKAMKSECQGQM---ERQMAAIQGKNESLEKVS-SLTAQLESTKEMLRKVVEELTAKKMTLESSERTV-----SDLTA 503
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  612 VLQENVDALIAD-------LNRANEKISHLEYIcKNKSDTMRELQQTQEDTFNKVAEQIKAQESCWQK------------ 672
Cdd:pfam15921  504 SLQEKERAIEATnaeitklRSRVDLKLQELQHL-KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQienmtqlvgqhg 582
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*.
gi 1242862547  673 --------QKKELEFQYSELLLEVqrraQKFQEIAEKNSEKLNRIE 710
Cdd:pfam15921  583 rtagamqvEKAQLEKEINDRRLEL----QEFKILKDKKDAKIRELE 624
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
990-1246 2.49e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.90  E-value: 2.49e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  990 TQRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKsqsLQTQLNEFKHSKLITHEKFESACEELNNALLR----EQQAQML 1065
Cdd:TIGR02168  231 VLRLEELREELEELQEELKEAEEELEELTAELQE---LEEKLEELRLEVSELEEEIEELQKELYALANEisrlEQQKQIL 307
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547 1066 LNEQAQ---QLQELNYRLELHSS-------EEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEEN 1135
Cdd:TIGR02168  308 RERLANlerQLEELEAQLEELESkldelaeELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK 387
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547 1136 IRDAESALRMAAKDKECVANHMRTIENMLHKVRDQISLSRTAATRNDFTLQLPKLHLETFAMEGLQGGPEVVacQAMIKS 1215
Cdd:TIGR02168  388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL--EEALEE 465
                          250       260       270
                   ....*....|....*....|....*....|.
gi 1242862547 1216 FMDVYQLASARISTLEKEMTSHRSHIATLKS 1246
Cdd:TIGR02168  466 LREELEEAEQALDAAERELAQLQARLDSLER 496
PRK11281 PRK11281
mechanosensitive channel MscK;
977-1143 2.25e-03

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 42.59  E-value: 2.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  977 KSTAALQKQIFGFTQRLhaaeverRSLRLEVTEYKRTVHEMKKELDKSQS---LQTQLNEfkhskliTHEKFESACEELN 1053
Cdd:PRK11281    80 EETEQLKQQLAQAPAKL-------RQAQAELEALKDDNDEETRETLSTLSlrqLESRLAQ-------TLDQLQNAQNDLA 145
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547 1054 --NALLREQQ-----AQMLLNEQAQQLQELNYRLELHSSEEADKN---QTLGEAVKSLSEAKMELRRKD-------QSLR 1116
Cdd:PRK11281   146 eyNSQLVSLQtqperAQAALYANSQRLQQIRNLLKGGKVGGKALRpsqRVLLQAEQALLNAQNDLQRKSlegntqlQDLL 225
                          170       180
                   ....*....|....*....|....*..
gi 1242862547 1117 QLNRHLTQLEQDkrRLEENIRDAESAL 1143
Cdd:PRK11281   226 QKQRDYLTARIQ--RLEHQLQLLQEAI 250
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
986-1151 3.22e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.82  E-value: 3.22e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  986 IFGFT--QRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKSQSLQTQLnefkhsklithekfeSACEELNNALLREQQAQ 1063
Cdd:COG4913    603 VLGFDnrAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAL---------------QRLAEYSWDEIDVASAE 667
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547 1064 MLLNEQAQQLQELnyrlelhsseEADkNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDAESAL 1143
Cdd:COG4913    668 REIAELEAELERL----------DAS-SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL 736

                   ....*...
gi 1242862547 1144 RMAAKDKE 1151
Cdd:COG4913    737 EAAEDLAR 744
 
Name Accession Description Interval E-value
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
58-818 5.13e-20

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 97.05  E-value: 5.13e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   58 HNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEaglgRRAAEERLAEaqrIQERLCAQNSELQGKANEIEKTfq 137
Cdd:TIGR02168  237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLE----VSELEEEIEE---LQKELYALANEISRLEQQKQIL-- 307
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  138 isqekwREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTELES--RVRETALGEFRLQTEEW 215
Cdd:TIGR02168  308 ------RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEleAELEELESRLEELEEQL 381
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  216 EAERRELQLIVQEQDSAvqsmQKKVEQLEAEHMDCSDLLRRQTSELEfsTQREERLRKEFEATTLRVRKLEENIEAERAA 295
Cdd:TIGR02168  382 ETLRSKVAQLELQIASL----NNEIERLEARLERLEDRRERLQQEIE--ELLKKLEEAELKELQAELEELEEELEELQEE 455
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  296 HLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNtqescaklnLLEREYFSQN----- 370
Cdd:TIGR02168  456 LERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKAL---------LKNQSGLSGIlgvls 526
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  371 KKLNEEIEDQKKVIIDLSKRLQY----NEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKD 446
Cdd:TIGR02168  527 ELISVDEGYEAAIEAALGGRLQAvvveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKD 606
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  447 KDK-PPSFSVVLETLRRTL---TDYQNKLEDASNELNN----------------INDAKEKTSNELDSTKQKIETHIKNT 506
Cdd:TIGR02168  607 LVKfDPKLRKALSYLLGGVlvvDDLDNALELAKKLRPGyrivtldgdlvrpggvITGGSAKTNSSILERRREIEELEEKI 686
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  507 KELQDKLTEVHKELSHLRAKCADREALITSLK----------VELQNVLHCWEKEKACAAQCESELQKLSQAFQKDSEEK 576
Cdd:TIGR02168  687 EELEEKIAELEKALAELRKELEELEEELEQLRkeleelsrqiSALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  577 LTFLHTLYQHLVAGCVLIKQPEGMLDKFswSELCAVLQENVDALIADLNRANEKISHLEYICKNKSDTMRELQQTQEDTf 656
Cdd:TIGR02168  767 EERLEEAEEELAEAEAEIEELEAQIEQL--KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL- 843
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  657 nkvaeqikaqescwQKQKKELEFQYSELLLEVQRRAQKFQEIAEKNSEKLNRIETSHEQLVRENSHFkTTLSRTQREqtc 736
Cdd:TIGR02168  844 --------------EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL-EELSEELRE--- 905
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  737 llaacalmagalcpLYSRSCALSTQRDFLQEQVNSLEL----FKLEIRTLAQALSAVDEKKQEEAKTKKKTFKGLVRVFR 812
Cdd:TIGR02168  906 --------------LESKRSELRRELEELREKLAQLELrlegLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR 971

                   ....*.
gi 1242862547  813 KGVIAI 818
Cdd:TIGR02168  972 RRLKRL 977
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
60-346 9.76e-14

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 76.51  E-value: 9.76e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   60 AELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERLcaqnSELQGKANEIEKTFQIS 139
Cdd:COG1196    232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE----YELLAELARLEQDIARL 307
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  140 QEKWREECRRFEHDLEERDNIiqncNQEYESLMQEKTRLQKTLQEILEKHEQEKTELESRvrETALGEFRLQTEEWEAER 219
Cdd:COG1196    308 EERRRELEERLEELEEELAEL----EEELEELEEELEELEEELEEAEEELEEAEAELAEA--EEALLEAEAELAEAEEEL 381
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  220 RELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLES 299
Cdd:COG1196    382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*..
gi 1242862547  300 KFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYE 346
Cdd:COG1196    462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
66-380 1.03e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 66.50  E-value: 1.03e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   66 ESQIARLRSEVEKGE---ALRQRLEydlavarkeaglgRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKtFQISQEK 142
Cdd:COG1196    199 ERQLEPLERQAEKAEryrELKEELK-------------ELEAELLLLKLRELEAELEELEAELEELEAELEE-LEAELAE 264
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  143 WREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTELEsrvretalgEFRLQTEEWEAERREL 222
Cdd:COG1196    265 LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE---------ELEEELAELEEELEEL 335
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  223 QLIVQEQDSAVQSMQKKVEQLEAEhmdcsdLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFN 302
Cdd:COG1196    336 EEELEELEEELEEAEEELEEAEAE------LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAE 409
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1242862547  303 SEIIQLRIRdLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQ 380
Cdd:COG1196    410 EALLERLER-LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
46-375 2.34e-10

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 65.47  E-value: 2.34e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   46 RAKKEKLEMTtkhNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERLCAQNSEL 125
Cdd:TIGR02169  670 RSEPAELQRL---RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL 746
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  126 QGKANEIEKTFQiSQEKWREECRRFEHDLEE------------RDNIIQNCNQEYESLMQEKTRLQKTLQEI---LEKHE 190
Cdd:TIGR02169  747 SSLEQEIENVKS-ELKELEARIEELEEDLHKleealndlearlSHSRIPEIQAELSKLEEEVSRIEARLREIeqkLNRLT 825
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  191 QEKTELESRVRE--TALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQRE 268
Cdd:TIGR02169  826 LEKEYLEKEIQElqEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI 905
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  269 ERLRKEFEATTLRVRKLEENIEA--ERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKN----EFKEVE 342
Cdd:TIGR02169  906 EELEAQIEKKRKRLSELKAKLEAleEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMlaiqEYEEVL 985
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*...
gi 1242862547  343 SAY----------EREKQNTQESCAKLNLLEREYFSQ-----NKKLNE 375
Cdd:TIGR02169  986 KRLdelkekraklEEERKAILERIEEYEKKKREVFMEafeaiNENFNE 1033
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
64-378 5.81e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 64.31  E-value: 5.81e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   64 SYESQIARLRSEVEKGEALRQRLEYDLAVARKEaglgRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTfqisQEKW 143
Cdd:TIGR02168  674 ERRREIEELEEKIEELEEKIAELEKALAELRKE----LEELEEELEQLRKELEELSRQISALRKDLARLEAE----VEQL 745
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  144 REECRRFEHDLEERDNIIQNCNQEYESlmqektrlqktLQEILEKHEQEKTELESRVRetalgEFRLQTEEWEAERRELQ 223
Cdd:TIGR02168  746 EERIAQLSKELTELEAEIEELEERLEE-----------AEEELAEAEAEIEELEAQIE-----QLKEELKALREALDELR 809
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  224 LIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEA---------ERA 294
Cdd:TIGR02168  810 AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnerasleEAL 889
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  295 AHLESKFNSEIIQLR-----IRDLEGALQVEKASQAEAVADLEMIKNEFKEVESA----YEREKQNTQESCAKLNLLERE 365
Cdd:TIGR02168  890 ALLRSELEELSEELReleskRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlseeYSLTLEEAEALENKIEDDEEE 969
                          330
                   ....*....|...
gi 1242862547  366 YFSQNKKLNEEIE 378
Cdd:TIGR02168  970 ARRRLKRLENKIK 982
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
37-330 9.64e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 63.42  E-value: 9.64e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   37 IADLRKKLHRAKKEKLEMTTKH---NAELSSYESQIARLRSEVE-KGEALRQ------RLEYDLAVARKEaglgRRAAEE 106
Cdd:COG1196    241 LEELEAELEELEAELEELEAELaelEAELEELRLELEELELELEeAQAEEYEllaelaRLEQDIARLEER----RRELEE 316
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  107 RLAEAQRIQERLCAQNSELQGKANEIEKTFQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEIL 186
Cdd:COG1196    317 RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAA 396
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  187 EKHEQEKTELESRVR-ETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFST 265
Cdd:COG1196    397 ELAAQLEELEEAEEAlLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1242862547  266 QREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVAD 330
Cdd:COG1196    477 AALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE 541
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
191-430 5.30e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 60.72  E-value: 5.30e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  191 QEKTELESRVRETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREER 270
Cdd:COG1196    220 EELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  271 LRKEFEATTLRVRKLEENIEAERAAHLEskfnseiIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQ 350
Cdd:COG1196    300 LEQDIARLEERRRELEERLEELEEELAE-------LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  351 NTQEscaKLNLLEREYFSQNKKLNEEIEDQKKvIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESIL 430
Cdd:COG1196    373 ELAE---AEEELEELAEELLEALRAAAELAAQ-LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
167-432 9.59e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 59.95  E-value: 9.59e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  167 EYESLMQEKTRLQKTLQEILEKHEQEKTELesRVRETALGEFRLQTEEWEAERRELQlivqeqdSAVQSMQKKVEQLEAE 246
Cdd:COG1196    233 KLRELEAELEELEAELEELEAELEELEAEL--AELEAELEELRLELEELELELEEAQ-------AEEYELLAELARLEQD 303
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  247 hmdcsdlLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAE 326
Cdd:COG1196    304 -------IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  327 AVADLEMIKNEFKEVESA---YEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQE 403
Cdd:COG1196    377 AEEELEELAEELLEALRAaaeLAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
                          250       260
                   ....*....|....*....|....*....
gi 1242862547  404 ELVMAKKHQAFLVETCENNVRELESILGS 432
Cdd:COG1196    457 EEEALLELLAELLEEAALLEAALAELLEE 485
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
21-577 1.16e-08

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 59.69  E-value: 1.16e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   21 SLDVKQMLKNETE--------SDIIADLRKKLHRAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEyDLAV 92
Cdd:PRK03918   167 LGEVIKEIKRRIErlekfikrTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE-ELEK 245
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   93 ARKEAGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTfqisqEKWREECRRFEHDLEERDNIIQNCNQEYESLM 172
Cdd:PRK03918   246 ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL-----KEKAEEYIKLSEFYEEYLDELREIEKRLSRLE 320
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  173 QEKTRLQKTLQEiLEKHEQEKTELESRVRETalgefRLQTEEWEAERRELQLIVQEQDSAvQSMQKKVEQLEAEHMDcsd 252
Cdd:PRK03918   321 EEINGIEERIKE-LEEKEERLEELKKKLKEL-----EKRLEELEERHELYEEAKAKKEEL-ERLKKRLTGLTPEKLE--- 390
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  253 llrrqtSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDL----------EGALQVEKA 322
Cdd:PRK03918   391 ------KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELteehrkelleEYTAELKRI 464
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  323 SQ--AEAVADLEMIKNEFKEVESAYEREKQ------------NTQESCAKLNLLE-----REYFSQNKKLNE------EI 377
Cdd:PRK03918   465 EKelKEIEEKERKLRKELRELEKVLKKESEliklkelaeqlkELEEKLKKYNLEElekkaEEYEKLKEKLIKlkgeikSL 544
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  378 EDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFL----VETCENNVRELESILGSFSvsaqwtsgvhKDKDKPPSf 453
Cdd:PRK03918   545 KKELEKLEELKKKLAELEKKLDELEEELAELLKELEELgfesVEELEERLKELEPFYNEYL----------ELKDAEKE- 613
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  454 svvLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKI--ETHikntKELQDKLTEVHKELSHLRAKCADRE 531
Cdd:PRK03918   614 ---LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYseEEY----EELREEYLELSRELAGLRAELEELE 686
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*.
gi 1242862547  532 ALITSLKVELQNVLHcwEKEKACAAQCESELQKLSQAFQKDSEEKL 577
Cdd:PRK03918   687 KRREEIKKTLEKLKE--ELEEREKAKKELEKLEKALERVEELREKV 730
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
149-710 4.88e-08

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 57.82  E-value: 4.88e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  149 RFEHDLEERDNIIQNCNQEY-ESLMQEKTR----LQKTLQEILEKHEQEKTELESRV--RETALGEFRLQTEEWEAERRE 221
Cdd:pfam15921   56 KYEVELDSPRKIIAYPGKEHiERVLEEYSHqvkdLQRRLNESNELHEKQKFYLRQSVidLQTKLQEMQMERDAMADIRRR 135
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  222 LQlivQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEfstqreeRLRK---EFEATTLRVRKLEenIEAERAAHLE 298
Cdd:pfam15921  136 ES---QSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIE-------QLRKmmlSHEGVLQEIRSIL--VDFEEASGKK 203
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  299 SKFNSEIIQLRIRDLEGALQvekASQAEAVADLEMIKNEFKEVESAYEREKQNTQEscaKLNLLEREYfsqNKKLNEEIE 378
Cdd:pfam15921  204 IYEHDSMSTMHFRSLGSAIS---KILRELDTEISYLKGRIFPVEDQLEALKSESQN---KIELLLQQH---QDRIEQLIS 274
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  379 DQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKDKDKPPSFSVVLE 458
Cdd:pfam15921  275 EHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLA 354
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  459 TlrRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADR-------E 531
Cdd:pfam15921  355 N--SELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRnmevqrlE 432
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  532 ALITSLKVELQNVLhcwEKEKACAAQCESELQKLSqAFQKDSEEKLTFLHTLYQHLVAGCVLIKQPEGMLdkfswSELCA 611
Cdd:pfam15921  433 ALLKAMKSECQGQM---ERQMAAIQGKNESLEKVS-SLTAQLESTKEMLRKVVEELTAKKMTLESSERTV-----SDLTA 503
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  612 VLQENVDALIAD-------LNRANEKISHLEYIcKNKSDTMRELQQTQEDTFNKVAEQIKAQESCWQK------------ 672
Cdd:pfam15921  504 SLQEKERAIEATnaeitklRSRVDLKLQELQHL-KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQienmtqlvgqhg 582
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*.
gi 1242862547  673 --------QKKELEFQYSELLLEVqrraQKFQEIAEKNSEKLNRIE 710
Cdd:pfam15921  583 rtagamqvEKAQLEKEINDRRLEL----QEFKILKDKKDAKIRELE 624
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
90-590 7.41e-08

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 57.00  E-value: 7.41e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   90 LAVARKEAGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEK--TFQISQEKWREECRRFEHDLEERDNIIQNCNQE 167
Cdd:PRK03918   167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEisSELPELREELEKLEKEVKELEELKEEIEELEKE 246
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  168 YESLMQEKTRLQKTLQEI---LEKHEQEKTELESRVRetalgefRLQTEEWEAER-RELQLIVQEQDSAVQSMQKKVEQL 243
Cdd:PRK03918   247 LESLEGSKRKLEEKIRELeerIEELKKEIEELEEKVK-------ELKELKEKAEEyIKLSEFYEEYLDELREIEKRLSRL 319
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  244 EAEhmdcSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEA-ERAAHLES---KFNSEIIQLRIRDLEGALQV 319
Cdd:PRK03918   320 EEE----INGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELyEEAKAKKEeleRLKKRLTGLTPEKLEKELEE 395
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  320 EKASQAEAVADLEMIKNEFKEVESAYEREKQNTQE---SCAKLNLLEREYFSQNKKlnEEIEDQKKVIIDLSKRLQYNEK 396
Cdd:PRK03918   396 LEKAKEEIEEEISKITARIGELKKEIKELKKAIEElkkAKGKCPVCGRELTEEHRK--ELLEEYTAELKRIEKELKEIEE 473
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  397 SCGELQEELV-----MAKKHQAFLVETCENNVRELESILGSFsvsaqwtsGVHKDKDKPPSFSVVLETLR------RTLT 465
Cdd:PRK03918   474 KERKLRKELRelekvLKKESELIKLKELAEQLKELEEKLKKY--------NLEELEKKAEEYEKLKEKLIklkgeiKSLK 545
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  466 DYQNKLEDASNELNNINDAKEKTSNELDSTKQKI-ETHIKNTKELQDKLTEVHK------ELSHLRAKCADREALITSLK 538
Cdd:PRK03918   546 KELEKLEELKKKLAELEKKLDELEEELAELLKELeELGFESVEELEERLKELEPfyneylELKDAEKELEREEKELKKLE 625
                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1242862547  539 VELQNVLHCWEKEKACAAQCESELQKLSQAFQKDSEEKLTFLHTLYQHLVAG 590
Cdd:PRK03918   626 EELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAG 677
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
183-516 2.34e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 55.45  E-value: 2.34e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  183 QEILEKHEQEKtELESRVRETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHmdcsdllrrqtSELE 262
Cdd:TIGR02168  213 ERYKELKAELR-ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV-----------SELE 280
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  263 fstQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVE 342
Cdd:TIGR02168  281 ---EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  343 SAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKviidLSKRLQYNEKSCGELQEElvmakkhqaflVETCENN 422
Cdd:TIGR02168  358 AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIAS----LNNEIERLEARLERLEDR-----------RERLQQE 422
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  423 VRELESILGSFSVSAQWTSgvhkdkdkppsfsvvLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETH 502
Cdd:TIGR02168  423 IEELLKKLEEAELKELQAE---------------LEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
                          330
                   ....*....|....
gi 1242862547  503 IKNTKELQDKLTEV 516
Cdd:TIGR02168  488 QARLDSLERLQENL 501
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
8-559 3.08e-07

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 55.05  E-value: 3.08e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547    8 NATPGDTQ-----------------RLKNASLDVKQMLKNETESdiIADLRKKLhrAKKEKLEMttkhNAELSSYESQIA 70
Cdd:PRK02224   145 NATPSDRQdmiddllqlgkleeyreRASDARLGVERVLSDQRGS--LDQLKAQI--EEKEEKDL----HERLNGLESELA 216
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   71 RLRSEVEKGEALRQRleydlAVARKEAglgrraAEERLAE-AQRIQE--RLCAQNSELQGKANEIEKTFQISQEKWREEC 147
Cdd:PRK02224   217 ELDEEIERYEEQREQ-----ARETRDE------ADEVLEEhEERREEleTLEAEIEDLRETIAETEREREELAEEVRDLR 285
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  148 RRFEHDLEERDNIIQNCnqEYESLMQEktrlqkTLQEILEKHEQEKTELESRVRE--TALGEFRLQTE------------ 213
Cdd:PRK02224   286 ERLEELEEERDDLLAEA--GLDDADAE------AVEARREELEDRDEELRDRLEEcrVAAQAHNEEAEslredaddleer 357
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  214 --EWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIE- 290
Cdd:PRK02224   358 aeELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRt 437
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  291 -----AERAAHLESKFNSEIIQlrirDLEGALQVEKASQ-----AEAVADLEMIKNEFKEVESAYEREKQnTQESCAKLN 360
Cdd:PRK02224   438 arervEEAEALLEAGKCPECGQ----PVEGSPHVETIEEdrervEELEAELEDLEEEVEEVEERLERAED-LVEAEDRIE 512
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  361 LLEreyfSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEEL-----VMAKKHQAflVETCENNVRELESILGSFSV 435
Cdd:PRK02224   513 RLE----ERREDLEELIAERRETIEEKRERAEELRERAAELEAEAeekreAAAEAEEE--AEEAREEVAELNSKLAELKE 586
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  436 SAQWTSGVHKDKDKPPSFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDStkQKIETHIKNTKELQDKLTE 515
Cdd:PRK02224   587 RIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDE--ARIEEAREDKERAEEYLEQ 664
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....
gi 1242862547  516 VHKELSHLRAKCADREALITSLKVELQNVLHCWEKEKACAAQCE 559
Cdd:PRK02224   665 VEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVE 708
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
133-404 3.44e-07

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 54.74  E-value: 3.44e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  133 EKTFQISQEKWREECRRFEHDLEERDNIiqncnQEYESLMQEKTRLQKTLQEilekhEQEKTELEsrvRETALGEFRLqt 212
Cdd:pfam17380  291 EKFEKMEQERLRQEKEEKAREVERRRKL-----EEAEKARQAEMDRQAAIYA-----EQERMAME---RERELERIRQ-- 355
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  213 eewEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQ-TSELEFSTQREERLRK--EFEATTLRVRKLEENI 289
Cdd:pfam17380  356 ---EERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQElEAARKVKILEEERQRKiqQQKVEMEQIRAEQEEA 432
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  290 EAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEA---VADLEMIKNEFKEVESAYEREKQNTQESCA-KLNLLERE 365
Cdd:pfam17380  433 RQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEerkRKKLELEKEKRDRKRAEEQRRKILEKELEErKQAMIEEE 512
                          250       260       270
                   ....*....|....*....|....*....|....*....
gi 1242862547  366 yfSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEE 404
Cdd:pfam17380  513 --RKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEME 549
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
34-538 4.08e-07

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 54.68  E-value: 4.08e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   34 SDIIADLRKKLHRAKKEKLEMTtKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAglgrRAAEERLAEAQR 113
Cdd:PRK03918   213 SSELPELREELEKLEKEVKELE-ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI----EELEEKVKELKE 287
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  114 IQE------RLCAQNSELQGKANEIEKTFQISQEKWREECRRFEhDLEERDNIIQNCNQEYESLMQEKTRLQ-------- 179
Cdd:PRK03918   288 LKEkaeeyiKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK-ELEEKEERLEELKKKLKELEKRLEELEerhelyee 366
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  180 -KTLQEILEKHEQEKTELESRVRETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDC-------- 250
Cdd:PRK03918   367 aKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgrelt 446
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  251 ----SDLLRRQTSELEfstqreeRLRKEFEATTLRVRKLEEnieaeRAAHLESKFNSEIIQLRIRDLegALQVEKASQAE 326
Cdd:PRK03918   447 eehrKELLEEYTAELK-------RIEKELKEIEEKERKLRK-----ELRELEKVLKKESELIKLKEL--AEQLKELEEKL 512
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  327 AVADLEMIKNEFKEVESAYErekqntqescaKLNLLEREYFSQNKKLnEEIEDQKKVIIDLSKRLQYNEKSCGELQEELv 406
Cdd:PRK03918   513 KKYNLEELEKKAEEYEKLKE-----------KLIKLKGEIKSLKKEL-EKLEELKKKLAELEKKLDELEEELAELLKEL- 579
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  407 maKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKDKDKPPSFSVVLETLRRTLTDYQNKLEDASNELN------- 479
Cdd:PRK03918   580 --EELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEelekkys 657
                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1242862547  480 -----NINDAKEKTSNE----------LDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLK 538
Cdd:PRK03918   658 eeeyeELREEYLELSRElaglraeleeLEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVK 731
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
150-543 4.30e-07

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 54.64  E-value: 4.30e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  150 FEHDLEERDNIIQNCNQEYeslmqekTRLQKTLQeILEKHEQEKTELESRVREtalgeFRLQTEEWEAERRELQLIVQEQ 229
Cdd:TIGR04523  178 LEKEKLNIQKNIDKIKNKL-------LKLELLLS-NLKKKIQKNKSLESQISE-----LKKQNNQLKDNIEKKQQEINEK 244
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  230 DSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEatTLRVRKLEENIEAERAAHLESKFNSEIIQLR 309
Cdd:TIGR04523  245 TTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLN--QLKSEISDLNNQKEQDWNKELKSELKNQEKK 322
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  310 IRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREyfsqNKKLNEEIEDQKKVIIDLSK 389
Cdd:TIGR04523  323 LEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE----NQSYKQEIKNLESQINDLES 398
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  390 RLQYNEKSCGELQEELVMAKKhqaflvetcENNVRELE-SILGSFSVSAQWTSGVHKDKDKppSFSVVLETLRRTLTDYQ 468
Cdd:TIGR04523  399 KIQNQEKLNQQKDEQIKKLQQ---------EKELLEKEiERLKETIIKNNSEIKDLTNQDS--VKELIIKNLDNTRESLE 467
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1242862547  469 NKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQN 543
Cdd:TIGR04523  468 TQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISD 542
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
177-567 9.19e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 53.53  E-value: 9.19e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  177 RLQKTLQEILEKHEQEKtELESRVRETALGEFRLQTEEWEAER-RELQLIVQEQD-----SAVQSMQKKVEQLEAEhmdc 250
Cdd:TIGR02169  171 KKEKALEELEEVEENIE-RLDLIIDEKRQQLERLRREREKAERyQALLKEKREYEgyellKEKEALERQKEAIERQ---- 245
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  251 sdlLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAEraahleskfnSEIIQLRIRDLEGALQVEKASQAEAVAd 330
Cdd:TIGR02169  246 ---LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL----------GEEEQLRVKEKIGELEAEIASLERSIA- 311
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  331 lemiknefkevesAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQynekscgELQEELvmakk 410
Cdd:TIGR02169  312 -------------EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYA-------ELKEEL----- 366
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  411 hqaflvetcennvRELESILGSFSVSAQwtsgvhkdkdkppsfsvvleTLRRTLTDYQNKLEDASNELNNINDAKEKTSN 490
Cdd:TIGR02169  367 -------------EDLRAELEEVDKEFA--------------------ETRDELKDYREKLEKLKREINELKRELDRLQE 413
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1242862547  491 ELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVLHCWEKEKACAAQCESELQKLSQ 567
Cdd:TIGR02169  414 ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
PTZ00121 PTZ00121
MAEBL; Provisional
28-562 1.60e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 52.84  E-value: 1.60e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   28 LKNETESDIIADLRKKLHRAKKEKLEMTTKHNAELSSYEsQIARLRSEVEKGEALRQRLEYdlavARKEAGLGRRAAEER 107
Cdd:PTZ00121  1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKAD-EAKKKAEEKKKADEAKKKAEE----AKKADEAKKKAEEAK 1457
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  108 LAEAQRIQERLCAQNSELQGKANEIEKTFQISQE-----KWREECRRFEHDLEERDNIiQNCNQEYESLMQEKTRLQKTL 182
Cdd:PTZ00121  1458 KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKaeeakKKADEAKKAAEAKKKADEA-KKAEEAKKADEAKKAEEAKKA 1536
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  183 QEILEKHEQEKTELESRVRETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELE 262
Cdd:PTZ00121  1537 DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAE 1616
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  263 FSTQREERLRKEFE----ATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEavadlemikNEF 338
Cdd:PTZ00121  1617 EAKIKAEELKKAEEekkkVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE---------EDE 1687
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  339 KEVESAYEREKQNTQEScAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVE- 417
Cdd:PTZ00121  1688 KKAAEALKKEAEEAKKA-EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEe 1766
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  418 --TCENNVRELESILgsfsvsaqwTSGVhkDKDKPPSFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDST 495
Cdd:PTZ00121  1767 ekKAEEIRKEKEAVI---------EEEL--DEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEV 1835
                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1242862547  496 KQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVLHCWEKEKACAAQCESEL 562
Cdd:PTZ00121  1836 ADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREI 1902
PTZ00121 PTZ00121
MAEBL; Provisional
24-404 2.26e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 52.45  E-value: 2.26e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   24 VKQMLKNETESDIIADLRKKLHRAKKEKLEMttKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRA 103
Cdd:PTZ00121  1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAA--KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAD 1381
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  104 AEERLAEAQRIQERLCAQNSELQGKANEIEKtfQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQ 183
Cdd:PTZ00121  1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKK--AAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA 1459
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  184 EILEKHEQEKTELESRVREtalGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRR--QTSEL 261
Cdd:PTZ00121  1460 EEAKKKAEEAKKADEAKKK---AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKaeEAKKA 1536
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  262 EFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNS---------EIIQLRIRDLEGALQVEKASQAEAVADLE 332
Cdd:PTZ00121  1537 DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMalrkaeeakKAEEARIEEVMKLYEEEKKMKAEEAKKAE 1616
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1242862547  333 MIKNEFKEVESAYEREKQNTQescakLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEE 404
Cdd:PTZ00121  1617 EAKIKAEELKKAEEEKKKVEQ-----LKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
72-524 2.62e-06

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 52.04  E-value: 2.62e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   72 LRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTFQISQEKWREECRRFE 151
Cdd:pfam15921  262 LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYE 341
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  152 HDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTELESRVRETALgEFRLQTEEWEAE----------RRE 221
Cdd:pfam15921  342 DKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSL-EKEQNKRLWDRDtgnsitidhlRRE 420
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  222 LqlivQEQDSAVQSMQKKVEQLEAEhmdCSDLLRRQTSELEFSTQREER---LRKEFEATTLRVRKLEENIEAERAAHLE 298
Cdd:pfam15921  421 L----DDRNMEVQRLEALLKAMKSE---CQGQMERQMAAIQGKNESLEKvssLTAQLESTKEMLRKVVEELTAKKMTLES 493
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  299 SKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAyEREKQNTQESCAKLNLLEREYFSQNKKLNEEIE 378
Cdd:pfam15921  494 SERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE-GDHLRNVQTECEALKLQMAEKDKVIEILRQQIE 572
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  379 DQKKVIIDLSKRLQYNEKSCGELQEEL---VMAKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKDKDKppsfsv 455
Cdd:pfam15921  573 NMTQLVGQHGRTAGAMQVEKAQLEKEIndrRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLR------ 646
                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1242862547  456 VLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIEThikNTKELQDKLTEVHKELSHLR 524
Cdd:pfam15921  647 AVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMET---TTNKLKMQLKSAQSELEQTR 712
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
37-405 2.94e-06

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 51.69  E-value: 2.94e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   37 IADLRKKLHRAKKEKLEMTTKHNaELSSYESQIARLRSEVEKGEALRQRLEYdlAVARKEAGLGRRAAEERLAEAQRIQE 116
Cdd:COG4717     73 LKELEEELKEAEEKEEEYAELQE-ELEELEEELEELEAELEELREELEKLEK--LLQLLPLYQELEALEAELAELPERLE 149
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  117 RLCAQNSELQGKANEIEKTFQiSQEKWREECRR-FEHDLEERDNIIQNCNQEYESLMQEKTRLQ---KTLQEILEKHEQE 192
Cdd:COG4717    150 ELEERLEELRELEEELEELEA-ELAELQEELEElLEQLSLATEEELQDLAEELEELQQRLAELEeelEEAQEELEELEEE 228
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  193 KTELESRVRETALGEfRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVE----------QLEAEHMDCSDLLRRQTSELE 262
Cdd:COG4717    229 LEQLENELEAAALEE-RLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvlflvlgllALLFLLLAREKASLGKEAEEL 307
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  263 FSTQREERLRKEFEATTLRVRKLEENIEAERAAHL----------ESKFNSEIIQLRIRDLEGALQVE-KASQAEAVADL 331
Cdd:COG4717    308 QALPALEELEEEELEELLAALGLPPDLSPEELLELldrieelqelLREAEELEEELQLEELEQEIAALlAEAGVEDEEEL 387
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1242862547  332 EMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKK-LNEEIEDQKKVIIDLSKRLQYNEKSCGELQEEL 405
Cdd:COG4717    388 RAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEeLEEELEELEEELEELEEELEELREELAELEAEL 462
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
175-525 3.32e-06

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 51.43  E-value: 3.32e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  175 KTRLQKTLQEILEKHEqeKTELESRVRETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLl 254
Cdd:pfam07888   33 QNRLEECLQERAELLQ--AQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSAS- 109
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  255 rrqtseLEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMI 334
Cdd:pfam07888  110 ------SEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQT 183
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  335 KNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNE------EIEDQKKVIIDLSKRLQYNEKSCGELQEEL--- 405
Cdd:pfam07888  184 EEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTahrkeaENEALLEELRSLQERLNASERKVEGLGEELssm 263
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  406 ------VMAKKHQAFLvETCENNVRELESILGSFSVSAQWTsgvhKDKdkppsfsvvlETLRRTLTDYQNKLEDASNELN 479
Cdd:pfam07888  264 aaqrdrTQAELHQARL-QAAQLTLQLADASLALREGRARWA----QER----------ETLQQSAEADKDRIEKLSAELQ 328
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*..
gi 1242862547  480 nindAKEKTSNELDSTKQKIETHIKNTKEL-QDKLTEVHKELSHLRA 525
Cdd:pfam07888  329 ----RLEERLQEERMEREKLEVELGREKDCnRVQLSESRRELQELKA 371
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
34-246 4.73e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 50.53  E-value: 4.73e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   34 SDIIADLRKKLHRAKKEKLEMTTKHN---AELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAE 110
Cdd:COG4942     19 ADAAAEAEAELEQLQQEIAELEKELAalkKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  111 AQRIQERLCAQNSELQGKANEIEKTFQISQEKWREECRR---FEHDLEERDNIIQNCNQEYESLMQEKTRLQ---KTLQE 184
Cdd:COG4942     99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRlqyLKYLAPARREQAEELRADLAELAALRAELEaerAELEA 178
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1242862547  185 ILEKHEQEKTELESRV--RETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAE 246
Cdd:COG4942    179 LLAELEEERAALEALKaeRQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
25-547 5.11e-06

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 51.20  E-value: 5.11e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   25 KQMLKNETESDIIadlRKKLHRAKKEKL-EMTTKHNAELSSYESQIARLRSEVEKGEALRQRLeydlavARKEAGLGRRA 103
Cdd:TIGR00606  279 KQMEKDNSELELK---MEKVFQGTDEQLnDLYHNHQRTVREKERELVDCQRELEKLNKERRLL------NQEKTELLVEQ 349
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  104 AEERLaEAQRIQERLCAQNSELQGKANeiektfqisqekwREECRRFEHDLE---ERDNIIQNCNQEYESLMQEKTRLQK 180
Cdd:TIGR00606  350 GRLQL-QADRHQEHIRARDSLIQSLAT-------------RLELDGFERGPFserQIKNFHTLVIERQEDEAKTAAQLCA 415
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  181 TLQEILEKHEQEKTELesRVRETALGE-FRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTS 259
Cdd:TIGR00606  416 DLQSKERLKQEQADEI--RDEKKGLGRtIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKN 493
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  260 ELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQL-------RIRDLEGALQVEKASQAEAVADLE 332
Cdd:TIGR00606  494 SLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKdkmdkdeQIRKIKSRHSDELTSLLGYFPNKK 573
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  333 MIKNEFKEVEsayeREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRL------QYNEKSCGELQEELV 406
Cdd:TIGR00606  574 QLEDWLHSKS----KEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdvcgsQDEESDLERLKEEIE 649
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  407 MAKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKDKDKPPSFSVVLETLRRTLTDyqnKLEDASNELNNINDAKE 486
Cdd:TIGR00606  650 KSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPD---KLKSTESELKKKEKRRD 726
                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1242862547  487 KTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVLHC 547
Cdd:TIGR00606  727 EMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVC 787
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
46-286 5.42e-06

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 51.19  E-value: 5.42e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   46 RAKKEKLEmttkhnAELSSYESQIARLRSEVEKGEALRQrleydlAVARKEAGLGRR-AAEERLAEAQRIQERLCAQNSE 124
Cdd:PRK02224   474 RERVEELE------AELEDLEEEVEEVEERLERAEDLVE------AEDRIERLEERReDLEELIAERRETIEEKRERAEE 541
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  125 LQGKANEIEKtfqiSQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKtLQEILEKHEQEKTELES-RVRET 203
Cdd:PRK02224   542 LRERAAELEA----EAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLAAIADAEDEIERlREKRE 616
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  204 ALGEFRLQTEEWEAERREL--QLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSE----------LEFSTQREERL 271
Cdd:PRK02224   617 ALAELNDERRERLAEKRERkrELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREErddlqaeigaVENELEELEEL 696
                          250
                   ....*....|....*
gi 1242862547  272 RKEFEATTLRVRKLE 286
Cdd:PRK02224   697 RERREALENRVEALE 711
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
102-568 9.99e-06

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 50.04  E-value: 9.99e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  102 RAAEERLAeaqrIQERLCAQNSELQGKANEIEktfQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTrlqkT 181
Cdd:PRK02224   170 RASDARLG----VERVLSDQRGSLDQLKAQIE---EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRD----E 238
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  182 LQEILEKHEQEKTELEsrvretalgefrlqteEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSEL 261
Cdd:PRK02224   239 ADEVLEEHEERREELE----------------TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEA 302
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  262 EFSTQREERLRKEFEATTLRVRKLEENIEAERAAhlESKFNSEIIQLRirdlegalqvekasqaEAVADLEMIKNEFKEV 341
Cdd:PRK02224   303 GLDDADAEAVEARREELEDRDEELRDRLEECRVA--AQAHNEEAESLR----------------EDADDLEERAEELREE 364
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  342 ESAYEREKQNTQEScaklnLLEREyfSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFL---VET 418
Cdd:PRK02224   365 AAELESELEEAREA-----VEDRR--EEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELeatLRT 437
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  419 CENNVRELESIL--------GSFSVSAQWTSGVHKDKDKPPSFSVVLETLRRTLTDYQNKLEDASnELNNINDAKEKTSN 490
Cdd:PRK02224   438 ARERVEEAEALLeagkcpecGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEE 516
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1242862547  491 ELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELqnvlhcwEKEKACAAQCESELQKLSQA 568
Cdd:PRK02224   517 RREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEA-------EEAREEVAELNSKLAELKER 587
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
61-551 1.16e-05

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 50.12  E-value: 1.16e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   61 ELSSYESQIARLRSEVEKGEALR----QRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTF 136
Cdd:pfam15921  318 QLSDLESTVSQLRSELREAKRMYedkiEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEK 397
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  137 QISQEKWREEC------RRFEHDLEERDNIIQNCNQEYESLMQE-KTRLQKTLQEILEKHEQ-EKTELESRVRETALGEF 208
Cdd:pfam15921  398 EQNKRLWDRDTgnsitiDHLRRELDDRNMEVQRLEALLKAMKSEcQGQMERQMAAIQGKNESlEKVSSLTAQLESTKEML 477
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  209 RLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLlrrqTSELEFSTQREERLRKEFEattlRVRKLEEN 288
Cdd:pfam15921  478 RKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKL----RSRVDLKLQELQHLKNEGD----HLRNVQTE 549
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  289 IEAERAAHLESKFNSEIIQLRIRDL----------EGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAK 358
Cdd:pfam15921  550 CEALKLQMAEKDKVIEILRQQIENMtqlvgqhgrtAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSD 629
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  359 LNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQ 438
Cdd:pfam15921  630 LELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELE 709
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  439 WTSGVHKDKDKPPSFSVVLE-------TLRRTLTD-YQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQ 510
Cdd:pfam15921  710 QTRNTLKSMEGSDGHAMKVAmgmqkqiTAKRGQIDaLQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMA 789
                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....
gi 1242862547  511 DKLTEVHKELSHLRAKCADREALI--TSLK-VELQNVLHCWEKE 551
Cdd:pfam15921  790 GELEVLRSQERRLKEKVANMEVALdkASLQfAECQDIIQRQEQE 833
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
39-291 2.17e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 49.30  E-value: 2.17e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   39 DLRKKLHRAK-KEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARK---------------------- 95
Cdd:TIGR02169  215 ALLKEKREYEgYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQlleelnkkikdlgeeeqlrvke 294
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   96 -------EAGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTfqisqekwREECRRFEHDLEERDNIIQNCNQEY 168
Cdd:TIGR02169  295 kigeleaEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL--------EREIEEERKRRDKLTEEYAELKEEL 366
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  169 ESLMQEKTRLQKTLQEILEKHEQEKTELESRVREtaLGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHM 248
Cdd:TIGR02169  367 EDLRAELEEVDKEFAETRDELKDYREKLEKLKRE--INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 1242862547  249 DCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEA 291
Cdd:TIGR02169  445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487
PTZ00121 PTZ00121
MAEBL; Provisional
68-410 2.35e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.98  E-value: 2.35e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   68 QIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERlcAQNSELQGKANEIEKTFQISQEKwrEEC 147
Cdd:PTZ00121  1167 EEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEE--ARKAEDAKKAEAVKKAEEAKKDA--EEA 1242
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  148 RRFEhdlEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTELESRVRETALGEFRLQTEEWEAERRELQLiVQ 227
Cdd:PTZ00121  1243 KKAE---EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK-AD 1318
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  228 EQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQ 307
Cdd:PTZ00121  1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  308 LRIRDLEGALQVEKASQAEAVADleMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKViiDL 387
Cdd:PTZ00121  1399 KAEEDKKKADELKKAAAAKKKAD--EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKA--DE 1474
                          330       340
                   ....*....|....*....|...
gi 1242862547  388 SKRLQYNEKSCGELQEELVMAKK 410
Cdd:PTZ00121  1475 AKKKAEEAKKADEAKKKAEEAKK 1497
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
990-1246 2.49e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.90  E-value: 2.49e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  990 TQRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKsqsLQTQLNEFKHSKLITHEKFESACEELNNALLR----EQQAQML 1065
Cdd:TIGR02168  231 VLRLEELREELEELQEELKEAEEELEELTAELQE---LEEKLEELRLEVSELEEEIEELQKELYALANEisrlEQQKQIL 307
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547 1066 LNEQAQ---QLQELNYRLELHSS-------EEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEEN 1135
Cdd:TIGR02168  308 RERLANlerQLEELEAQLEELESkldelaeELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK 387
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547 1136 IRDAESALRMAAKDKECVANHMRTIENMLHKVRDQISLSRTAATRNDFTLQLPKLHLETFAMEGLQGGPEVVacQAMIKS 1215
Cdd:TIGR02168  388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL--EEALEE 465
                          250       260       270
                   ....*....|....*....|....*....|.
gi 1242862547 1216 FMDVYQLASARISTLEKEMTSHRSHIATLKS 1246
Cdd:TIGR02168  466 LREELEEAEQALDAAERELAQLQARLDSLER 496
PTZ00121 PTZ00121
MAEBL; Provisional
39-574 4.42e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.21  E-value: 4.42e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   39 DLRKKLHRAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERL 118
Cdd:PTZ00121  1234 EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE 1313
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  119 CAQNSELQGKANEIEKTFQISQEKWREECRRFE---HDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTE 195
Cdd:PTZ00121  1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEaakAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA 1393
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  196 LESRVRETALGEFRLQTEEWEAERR----------------ELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTS 259
Cdd:PTZ00121  1394 DEAKKKAEEDKKKADELKKAAAAKKkadeakkkaeekkkadEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD 1473
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  260 ELEFSTQ---REERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKN 336
Cdd:PTZ00121  1474 EAKKKAEeakKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  337 EfKEVESAYEREKQNTQEScaklnllEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLV 416
Cdd:PTZ00121  1554 A-EELKKAEEKKKAEEAKK-------AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL 1625
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  417 ETCENNVRELESILGSFSVSAQWTSGVHKDKDKPpsfSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNElDSTK 496
Cdd:PTZ00121  1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN---KIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE-AEEA 1701
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  497 QKIETHIKNTKELQDKLTEVHK--ELSHLRAKCADREALITSLKVELQNVLhcwEKEKACAAQCESELQKLSQAFQKDSE 574
Cdd:PTZ00121  1702 KKAEELKKKEAEEKKKAEELKKaeEENKIKAEEAKKEAEEDKKKAEEAKKD---EEEKKKIAHLKKEEEKKAEEIRKEKE 1778
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
144-809 8.05e-05

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 47.37  E-value: 8.05e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  144 REECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEI---LEKHEQEKTELESRVREtaLGEFRLQTEEWEAERR 220
Cdd:PRK03918   178 IERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELreeLEKLEKEVKELEELKEE--IEELEKELESLEGSKR 255
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  221 ELQLIVQEQDSAVQSMQKKVEQLEAEhmdcsdllRRQTSELEFSTQREERLRKEFEATTLRVRKLEEnieaeRAAHLESK 300
Cdd:PRK03918   256 KLEEKIRELEERIEELKKEIEELEEK--------VKELKELKEKAEEYIKLSEFYEEYLDELREIEK-----RLSRLEEE 322
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  301 FNSeiIQLRIRDLEgalqvekasqaEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQ 380
Cdd:PRK03918   323 ING--IEERIKELE-----------EKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKL 389
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  381 KKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLvetcENNVRELESILGSFSVSAQWTSGVHKdkdkppsfsvvletl 460
Cdd:PRK03918   390 EKELEELEKAKEEIEEEISKITARIGELKKEIKEL----KKAIEELKKAKGKCPVCGRELTEEHR--------------- 450
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  461 RRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKI--ETHIKNTKELQDKLTEVHKELSHLRAKCADREA------ 532
Cdd:PRK03918   451 KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLkkESELIKLKELAEQLKELEEKLKKYNLEELEKKAeeyekl 530
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  533 --LITSLKVELQNVLHCWEKEKACaaqcESELQKLSQAFqKDSEEKLTFLHTLYQHLVAGCVlikqpegmldkfswselc 610
Cdd:PRK03918   531 keKLIKLKGEIKSLKKELEKLEEL----KKKLAELEKKL-DELEEELAELLKELEELGFESV------------------ 587
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  611 avlqENVDALIADLNRANEKISHLEYICKNKSDTMRELQQTQ---EDTFNKVAEQIKAQESCwQKQKKELEFQYSEllle 687
Cdd:PRK03918   588 ----EELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEeelDKAFEELAETEKRLEEL-RKELEELEKKYSE---- 658
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  688 vqrraQKFQEIAEKNSEKLNRIETSHEQLVRENSHFKTTLSRTqreqtcllaacalmagalcplysrscalstqrDFLQE 767
Cdd:PRK03918   659 -----EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTL--------------------------------EKLKE 701
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|..
gi 1242862547  768 QVNSLELFKLEIRTLAQALSAVdekkqEEAKTKKKTFKGLVR 809
Cdd:PRK03918   702 ELEEREKAKKELEKLEKALERV-----EELREKVKKYKALLK 738
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
66-318 9.14e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 47.22  E-value: 9.14e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   66 ESQIARLRSEVEKGEALRQRLEYDLAVARKEaglgRRAAEERLAEAQRIQErLCAQNSELQGKANEIEktfQISQEkwRE 145
Cdd:COG4913    609 RAKLAALEAELAELEEELAEAEERLEALEAE----LDALQERREALQRLAE-YSWDEIDVASAEREIA---ELEAE--LE 678
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  146 ECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTEL-ESRVRETALGEFRLQTEEWEAERRELQL 224
Cdd:COG4913    679 RLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELdELQDRLEAAEDLARLELRALLEERFAAA 758
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  225 IVQEQDSAV-QSMQKKVEQLEAEHMDCSDLLRRQTSE---------------LEFSTQREERLRK-------EFEAttlR 281
Cdd:COG4913    759 LGDAVERELrENLEERIDALRARLNRAEEELERAMRAfnrewpaetadldadLESLPEYLALLDRleedglpEYEE---R 835
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|
gi 1242862547  282 VRK-LEENIEAERaAHLESKFNSEI--IQLRIRDLEGALQ 318
Cdd:COG4913    836 FKElLNENSIEFV-ADLLSKLRRAIreIKERIDPLNDSLK 874
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
82-340 1.84e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 46.06  E-value: 1.84e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   82 LRQRLEYDLAVARKEAGLGRRAAEERLAE-------------AQRIQER---LCAQN-SELQGKANEIEKTFQISQEKwr 144
Cdd:COG4913    510 LRGRLVYERVRTGLPDPERPRLDPDSLAGkldfkphpfrawlEAELGRRfdyVCVDSpEELRRHPRAITRAGQVKGNG-- 587
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  145 eecRRFEHDLE---ERDNIIQNCNQEY-ESLMQEKTRLQKTLQEI---LEKHEQEKTELESRVRE-TALGEFRLQTEEWE 216
Cdd:COG4913    588 ---TRHEKDDRrriRSRYVLGFDNRAKlAALEAELAELEEELAEAeerLEALEAELDALQERREAlQRLAEYSWDEIDVA 664
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  217 AERRELQLIVQEQ------DSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIE 290
Cdd:COG4913    665 SAEREIAELEAELerldasSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR 744
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1242862547  291 AERAAHLESKFNSEIIQLRIRD----LEGALQVEKASQAEAVADLEMIKNEFKE 340
Cdd:COG4913    745 LELRALLEERFAAALGDAVERElrenLEERIDALRARLNRAEEELERAMRAFNR 798
PTZ00121 PTZ00121
MAEBL; Provisional
64-735 1.93e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 46.29  E-value: 1.93e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   64 SYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERlcAQNSELQGKANEI----EKTFQIS 139
Cdd:PTZ00121  1169 ARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAED--AKKAEAVKKAEEAkkdaEEAKKAE 1246
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  140 QEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRlqkTLQEILEKHEQEKTELESRVRET-ALGEFRLQTEEWEAE 218
Cdd:PTZ00121  1247 EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELK---KAEEKKKADEAKKAEEKKKADEAkKKAEEAKKADEAKKK 1323
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  219 RRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTlrvRKLEENIEAERAAHLE 298
Cdd:PTZ00121  1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK---KKAEEKKKADEAKKKA 1400
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  299 SKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIE 378
Cdd:PTZ00121  1401 EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE 1480
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  379 DQKKViIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESilgsfSVSAQWTSGVHKDKDKPPSFSV-VL 457
Cdd:PTZ00121  1481 EAKKA-DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKK-----AEEAKKADEAKKAEEKKKADELkKA 1554
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  458 ETLRRtlTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCAD-REALITS 536
Cdd:PTZ00121  1555 EELKK--AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElKKAEEEK 1632
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  537 LKVELQNVLHCWEKEKACAAQCESELQKLSQAFQKDSEEKltflhtlyqhlvagcvlikqpegmlDKFSWSELCAVLQEN 616
Cdd:PTZ00121  1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE-------------------------DKKKAEEAKKAEEDE 1687
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  617 VDALIADLNRANEKiSHLEYICKNKSDTMRELQQTQEDtfnKVAEQIKAQEScwqKQKKELEFQYSELLLEVQRRAQKFQ 696
Cdd:PTZ00121  1688 KKAAEALKKEAEEA-KKAEELKKKEAEEKKKAEELKKA---EEENKIKAEEA---KKEAEEDKKKAEEAKKDEEEKKKIA 1760
                          650       660       670
                   ....*....|....*....|....*....|....*....
gi 1242862547  697 EIAEKNSEKLNRIETSHEQLVRENSHFKTTLSRTQREQT 735
Cdd:PTZ00121  1761 HLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
468-1248 2.08e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 45.82  E-value: 2.08e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  468 QNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKnTKELQDKLTEVHKELSHLRAKCADREalITSLKVELQNVLHC 547
Cdd:TIGR02168  178 ERKLERTRENLDRLEDILNELERQLKSLERQAEKAER-YKELKAELRELELALLVLRLEELREE--LEELQEELKEAEEE 254
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  548 WEKEKACAAQCESELQKLSQAFQKDSEEKLTFLHTLYQHLVagcvLIKQPEGMLdkfswselcAVLQENVDALIADLNRA 627
Cdd:TIGR02168  255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN----EISRLEQQK---------QILRERLANLERQLEEL 321
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  628 NEKISHLEyickNKSDTMRE---LQQTQEDTFNKVAEQIKAQESCWQKQKKELEFQYSELLLEVQRRAQKFQEI---AEK 701
Cdd:TIGR02168  322 EAQLEELE----SKLDELAEelaELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLelqIAS 397
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  702 NSEKLNRIETSHEQLVREnshfkttLSRTQREQTCLLAAcaLMAGALCPLYSRSCALSTQRDFLQEQVNSLELFKLEIRT 781
Cdd:TIGR02168  398 LNNEIERLEARLERLEDR-------RERLQQEIEELLKK--LEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  782 -LAQALSAVDEKKQEEAKTKKKtFKGLVRVFR------KGVIAILA-ANRLKLLGQSCAFLFTWMES--------CKEGI 845
Cdd:TIGR02168  469 eLEEAEQALDAAERELAQLQAR-LDSLERLQEnlegfsEGVKALLKnQSGLSGILGVLSELISVDEGyeaaieaaLGGRL 547
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  846 GMLVCTGEPKDKR--QFPKHQREQLRCLQALAWLTSSDLLGTVISSMTELQEVIS------KTDPNSR-----ICGHLLI 912
Cdd:TIGR02168  548 QAVVVENLNAAKKaiAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGvakdlvKFDPKLRkalsyLLGGVLV 627
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  913 gaaknsfaklMDKLSSAMASIPLHSSRSITYVEKDSLVQR---LARGLHKVNTLALKYG-----LCSHIPIMKSTAA-LQ 983
Cdd:TIGR02168  628 ----------VDDLDNALELAKKLRPGYRIVTLDGDLVRPggvITGGSAKTNSSILERRreieeLEEKIEELEEKIAeLE 697
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  984 KQIFGFTQRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKSQSLQTQLNEFKHSKLITHEKFEsacEELNNALLREQQAQ 1063
Cdd:TIGR02168  698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE---AEIEELEERLEEAE 774
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547 1064 MLLNEQAQQLQELNYRLELHSSEeadkNQTLGEAVKSLSEAKMELRRKDQSLRQ-----------LNRHLTQLEQDKRRL 1132
Cdd:TIGR02168  775 EELAEAEAEIEELEAQIEQLKEE----LKALREALDELRAELTLLNEEAANLRErleslerriaaTERRLEDLEEQIEEL 850
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547 1133 EENI--------------RDAESALRMAAKDKECVANHMRTIENMLHKVRDQISLSRTAATRNDFTLQLPKLHLETFAM- 1197
Cdd:TIGR02168  851 SEDIeslaaeieeleeliEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELr 930
                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1242862547 1198 -EGLQGGPEVVACQAMiKSFMDVYQLASARISTLEKEMTSHRSHIATLKSEL 1248
Cdd:TIGR02168  931 lEGLEVRIDNLQERLS-EEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
308-577 2.44e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 45.83  E-value: 2.44e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  308 LRIRDLEGALQVEKASqaeAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQN----------KKLNEEI 377
Cdd:TIGR02169  677 QRLRERLEGLKRELSS---LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKerleeleedlSSLEQEI 753
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  378 EDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAF-LVETCENNVRELESILGSFSVSAQWTSGVHKDKDKPPSFsvv 456
Cdd:TIGR02169  754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHsRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY--- 830
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  457 LETLRRTLTDYQNKLEDASN----ELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREA 532
Cdd:TIGR02169  831 LEKEIQELQEQRIDLKEQIKsiekEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*.
gi 1242862547  533 LITSLKvELQNVLhcweKEKACAAQCE-SELQKLSQAFQKDSEEKL 577
Cdd:TIGR02169  911 QIEKKR-KRLSEL----KAKLEALEEElSEIEDPKGEDEEIPEEEL 951
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
46-277 2.59e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 45.68  E-value: 2.59e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   46 RAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAglgrraAEERLAEAQRIQERLCAQNSEL 125
Cdd:COG4913    248 REQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEE------LRAELARLEAELERLEARLDAL 321
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  126 QGKANEIEKtfQISQEKWREEcrrfeHDLEERdniIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTELESRVREtal 205
Cdd:COG4913    322 REELDELEA--QIRGNGGDRL-----EQLERE---IERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAE--- 388
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1242862547  206 geFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHmdcSDLLRRQTSelefSTQREERLRKEFEA 277
Cdd:COG4913    389 --AAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEI---ASLERRKSN----IPARLLALRDALAE 451
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
17-503 2.64e-04

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 45.81  E-value: 2.64e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   17 LKNASLDVKQmlKNETESDIiADLRKKLHRAKKEklemTTKHNAELSSYESQIARLrsevekgealrqrleYDLAVARKE 96
Cdd:TIGR01612 1303 IREKSLKIIE--DFSEESDI-NDIKKELQKNLLD----AQKHNSDINLYLNEIANI---------------YNILKLNKI 1360
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   97 AGLGRRAAEErlaeAQRIQERLCAQNSELQGKANEIEKtfqISQEKWREECR-RFEHDLEERD--NIIQNCNQEYESLMQ 173
Cdd:TIGR01612 1361 KKIIDEVKEY----TKEIEENNKNIKDELDKSEKLIKK---IKDDINLEECKsKIESTLDDKDidECIKKIKELKNHILS 1433
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  174 EKTRLQKTLQEILEKHEQektelesrvretalgeFRLQTEEWEAERRELQLIVQEQ-DSAVQSMQKKVEQLEaEHMDCSD 252
Cdd:TIGR01612 1434 EESNIDTYFKNADENNEN----------------VLLLFKNIEMADNKSQHILKIKkDNATNDHDFNINELK-EHIDKSK 1496
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  253 LLRRQTSELEFSTQREERLRKEF--EATTLRVRKLEENIEAERAahlESKFNSEIIQLRIRDLEG--ALQVEKASQaeav 328
Cdd:TIGR01612 1497 GCKDEADKNAKAIEKNKELFEQYkkDVTELLNKYSALAIKNKFA---KTKKDSEIIIKEIKDAHKkfILEAEKSEQ---- 1569
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  329 aDLEMIKNEFKEVEsayerekqntqescaklnllerEYFSQNKKLNeeiedqkKVIIDLSKRLQYNEKSCGELQEelvMA 408
Cdd:TIGR01612 1570 -KIKEIKKEKFRIE----------------------DDAAKNDKSN-------KAAIDIQLSLENFENKFLKISD---IK 1616
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  409 KKHQAFLVETcennvRELESILGSFSVSAQWTSgVHKDKDKPPSFSVVLETLRrtltDYQNKLEDASNELNNINDAKEKT 488
Cdd:TIGR01612 1617 KKINDCLKET-----ESIEKKISSFSIDSQDTE-LKENGDNLNSLQEFLESLK----DQKKNIEDKKKELDELDSEIEKI 1686
                          490
                   ....*....|....*
gi 1242862547  489 SNELDSTKQKIETHI 503
Cdd:TIGR01612 1687 EIDVDQHKKNYEIGI 1701
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
97-309 2.97e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 44.75  E-value: 2.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   97 AGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKtfqiSQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKT 176
Cdd:COG4942     11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKK----EEKALLKQLAALERRIAALARRIRALEQELAALEAELA 86
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  177 RLQKTLQEILEKHEQEKTELESRV-------------------------------------RETALGEFRLQTEEWEAER 219
Cdd:COG4942     87 ELEKEIAELRAELEAQKEELAELLralyrlgrqpplalllspedfldavrrlqylkylapaRREQAEELRADLAELAALR 166
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  220 RELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLES 299
Cdd:COG4942    167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
                          250
                   ....*....|
gi 1242862547  300 KFNSEIIQLR 309
Cdd:COG4942    247 GFAALKGKLP 256
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
41-542 4.88e-04

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 44.71  E-value: 4.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   41 RKKLHRAKKEKLE----MTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAglgrraaeERLAEAQRIQE 116
Cdd:pfam05483  210 RLEMHFKLKEDHEkiqhLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKA--------NQLEEKTKLQD 281
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  117 RLCAQNSELQGKANEIEKTFQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTEL 196
Cdd:pfam05483  282 ENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSL 361
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  197 ESRVRETalgefRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQRE---ERLRK 273
Cdd:pfam05483  362 EELLRTE-----QQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEkiaEELKG 436
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  274 EFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEV---ESAYEREKQ 350
Cdd:pfam05483  437 KEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELtqeASDMTLELK 516
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  351 NTQESCAKLNllereyfSQNKKLNEEIEDQKKVIIDLSKRLQYnekscgeLQEELVMAKKHQAFLVETCENNVRELE-SI 429
Cdd:pfam05483  517 KHQEDIINCK-------KQEERMLKQIENLEEKEMNLRDELES-------VREEFIQKGDEVKCKLDKSEENARSIEyEV 582
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  430 LGSFSVSAQWTSGVHKDKDKPPSFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKN-TKE 508
Cdd:pfam05483  583 LKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNyQKE 662
                          490       500       510
                   ....*....|....*....|....*....|....*
gi 1242862547  509 LQDKLTEVHKELSHL-RAKCADREALITSLKVELQ 542
Cdd:pfam05483  663 IEDKKISEEKLLEEVeKAKAIADEAVKLQKEIDKR 697
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1023-1303 5.01e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.66  E-value: 5.01e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547 1023 KSQSLQTQLNEFKHSKLITHekFESACEELNNALLREQQAQMLLNEQAQQLQELNYRLELHSSEEADKNQTLGEAVKSLS 1102
Cdd:TIGR02168  214 RYKELKAELRELELALLVLR--LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY 291
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547 1103 EAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDAESALRMAAKDkecvanhmrtienmLHKVRDQIslsrtaatrnd 1182
Cdd:TIGR02168  292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE--------------LAELEEKL----------- 346
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547 1183 ftlqlpklhletfamEGLQggPEVVACQAMIKSFMDVYQLASARISTLEKEMTSHRSHIATLKSEL--HTACLRENESLQ 1260
Cdd:TIGR02168  347 ---------------EELK--EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIasLNNEIERLEARL 409
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 1242862547 1261 SMGSRDHSNLSVPSRAAAPMDTVGDLLPLQAELDTTYTFLKET 1303
Cdd:TIGR02168  410 ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL 452
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
304-578 5.30e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 44.54  E-value: 5.30e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  304 EIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNE---EIEDQ 380
Cdd:COG1196    228 ELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARleqDIARL 307
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  381 KKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKDKDKppsfsvVLETL 460
Cdd:COG1196    308 EERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE------AEEEL 381
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  461 RRTLTDYQNKLEDASNELNNINDAKEktsnELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVE 540
Cdd:COG1196    382 EELAEELLEALRAAAELAAQLEELEE----AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
                          250       260       270
                   ....*....|....*....|....*....|....*...
gi 1242862547  541 LQNVLHCWEKEKACAAQCESELQKLSQAFQKDSEEKLT 578
Cdd:COG1196    458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
126-570 6.04e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 44.37  E-value: 6.04e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  126 QGKANEIEKTFQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTELESRVRETAL 205
Cdd:COG4717     62 QGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAEL 141
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  206 GEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCS----DLLRRQTSELEFSTQREERLRKEFEATTLR 281
Cdd:COG4717    142 AELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSlateEELQDLAEELEELQQRLAELEEELEEAQEE 221
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  282 VRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEF--------KEVESAYEREKQNTQ 353
Cdd:COG4717    222 LEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVlflvlgllALLFLLLAREKASLG 301
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  354 ESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLveTCENNVRELESILGSF 433
Cdd:COG4717    302 KEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL--QLEELEQEIAALLAEA 379
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  434 SVS--AQWTSGVHKDKDKppsfsvvlETLRRTLTDYQNKLEDASNELNNINDAKEKTS--NELDSTKQKIETHIKNTKEL 509
Cdd:COG4717    380 GVEdeEELRAALEQAEEY--------QELKEELEELEEQLEELLGELEELLEALDEEEleEELEELEEELEELEEELEEL 451
                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1242862547  510 QDKLTEVHKELSHLRA--KCADREALITSLKVELQNVLHCWEKEKACAAQCESELQKLSQAFQ 570
Cdd:COG4717    452 REELAELEAELEQLEEdgELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERL 514
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
38-273 7.81e-04

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 44.06  E-value: 7.81e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   38 ADLRKKLHRAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEAlrQRLEYDlavarkEAGLGRRAAE-ERLAEAQRIQE 116
Cdd:pfam12128  286 AELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALED--QHGAFL------DADIETAAADqEQLPSWQSELE 357
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  117 RLCAQNSELQGKANEIEKTFQISQEKWREECRRFEHDLEER-DNIIQNCNQEYESlmqEKTRLQKTLQEILEKHEQEKTE 195
Cdd:pfam12128  358 NLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKlAKIREARDRQLAV---AEDDLQALESELREQLEAGKLE 434
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  196 L--ESRVRETALGEFRLQTEEWEAErRELQLIVQEQDSAVQSMQKKVEQLEAEhmdcsdLLRRQTSELEFSTQREERLRK 273
Cdd:pfam12128  435 FneEEYRLKSRLGELKLRLNQATAT-PELLLQLENFDERIERAREEQEAANAE------VERLQSELRQARKRRDQASEA 507
Borrelia_P83 pfam05262
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
69-246 9.87e-04

Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.


Pssm-ID: 114011 [Multi-domain]  Cd Length: 489  Bit Score: 43.45  E-value: 9.87e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   69 IARLRSEVEKGEALRQRLeydLAVARKEAGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTFQISQEKWREECR 148
Cdd:pfam05262  183 VEALREDNEKGVNFRRDM---TDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKN 259
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  149 RFE----HDLEERDNIIQNCNQEYESLMQEktrLQKTLQEILEKHEQEKTELESRVREtalgefrlqtEEWEAERRELQL 224
Cdd:pfam05262  260 LPKpadtSSPKEDKQVAENQKREIEKAQIE---IKKNDEEALKAKDHKAFDLKQESKA----------SEKEAEDKELEA 326
                          170       180
                   ....*....|....*....|..
gi 1242862547  225 IVQEQDSAvQSMQKKVEQLEAE 246
Cdd:pfam05262  327 QKKREPVA-EDLQKTKPQVEAQ 347
PTZ00121 PTZ00121
MAEBL; Provisional
57-410 1.18e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.59  E-value: 1.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   57 KHNAELSSYESQIaRLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAE-AQRIQERLCAQNSELQGKANEIEKT 135
Cdd:PTZ00121  1085 EDNRADEATEEAF-GKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEdARKAEEARKAEDAKRVEIARKAEDA 1163
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  136 FQISQEKWREECRRFEHdleerdniiqncnqeyeslmqektrlQKTLQEILEKHEQEKTELESRVRETALGEFRLQTEew 215
Cdd:PTZ00121  1164 RKAEEARKAEDAKKAEA--------------------------ARKAEEVRKAEELRKAEDARKAEAARKAEEERKAE-- 1215
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  216 EAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRR-QTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERA 294
Cdd:PTZ00121  1216 EARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKfEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  295 AHLESKFNSEIIQLRIRDLEGALQVEKASQaEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLN 374
Cdd:PTZ00121  1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAE-EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*
gi 1242862547  375 EEIE---------DQKKVIIDLSKRLQYNEKSCGELQEELVMAKK 410
Cdd:PTZ00121  1375 EAKKkadaakkkaEEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
19-544 1.25e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 43.51  E-value: 1.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   19 NASLDVKQMLKNETESdIIADLRKKLHRAKKEKLEMT---TKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARK 95
Cdd:TIGR02168  357 EAELEELEAELEELES-RLEELEEQLETLRSKVAQLElqiASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL 435
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   96 EAglgrraAEERLAEAQRIQERLCAQNSELQGKANEIEKTFQISQEKWREEcRRFEHDLEERDNIIQNCNQEYES----- 170
Cdd:TIGR02168  436 KE------LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA-ERELAQLQARLDSLERLQENLEGfsegv 508
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  171 --LMQEKTRLQKTLQEILEKHEQEKtELESRVrETALGEfRLQ---TEEWEAERRELQLIVQEQDSAVQSM---QKKVEQ 242
Cdd:TIGR02168  509 kaLLKNQSGLSGILGVLSELISVDE-GYEAAI-EAALGG-RLQavvVENLNAAKKAIAFLKQNELGRVTFLpldSIKGTE 585
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  243 LEAEHMDCSDLLRRQTSELEFSTQREERLRKEFE------------ATTLRVRKLEEniEAERAAHLE------------ 298
Cdd:TIGR02168  586 IQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddlDNALELAKKLR--PGYRIVTLDgdlvrpggvitg 663
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  299 --SKFNSEIIQLR--IRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKK-- 372
Cdd:TIGR02168  664 gsAKTNSSILERRreIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEve 743
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  373 -LNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSvsaqwtsgvhkdkdkpp 451
Cdd:TIGR02168  744 qLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD----------------- 806
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  452 SFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADRE 531
Cdd:TIGR02168  807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLE 886
                          570
                   ....*....|...
gi 1242862547  532 ALITSLKVELQNV 544
Cdd:TIGR02168  887 EALALLRSELEEL 899
PRK01156 PRK01156
chromosome segregation protein; Provisional
52-520 1.37e-03

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 43.35  E-value: 1.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   52 LEMTTKHNAELSSYESQIARLRSEVEKGEALRQR---LEYDLAVARKEAGLGRRAAEERLAEAQRIQERLCAQNS---EL 125
Cdd:PRK01156   248 EDMKNRYESEIKTAESDLSMELEKNNYYKELEERhmkIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINkyhAI 327
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  126 QGKANEIEKTFQISQEKWREecrrfehdLEERDNIIQNCnQEYESLMQEKTRLQKTLQEILEKHEQEKTELESRVRETaL 205
Cdd:PRK01156   328 IKKLSVLQKDYNDYIKKKSR--------YDDLNNQILEL-EGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEI-L 397
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  206 GEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDcsdlLRRQTSELE-----------FSTQREERLRKE 274
Cdd:PRK01156   398 KIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDE----LSRNMEMLNgqsvcpvcgttLGEEKSNHIINH 473
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  275 FEATTLR----VRKLEENIEA--ERAAHLEsKFNSEIIQLRIRDLEGALQVEKASQAEaVADLEMIKNEFKEVESAYERE 348
Cdd:PRK01156   474 YNEKKSRleekIREIEIEVKDidEKIVDLK-KRKEYLESEEINKSINEYNKIESARAD-LEDIKIKINELKDKHDKYEEI 551
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  349 KQntQESCAKLNLLEREYFSQNK-----------KLNEEIEDQKKVIIDLSKRLQ-----------YNEKSCGELQEElv 406
Cdd:PRK01156   552 KN--RYKSLKLEDLDSKRTSWLNalavislidieTNRSRSNEIKKQLNDLESRLQeieigfpddksYIDKSIREIENE-- 627
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  407 makkhqaflVETCENNVRELESIlgsfsvsaqwtsgvhkdkdkppsfSVVLETLRRTLTDY----------QNKLEDASN 476
Cdd:PRK01156   628 ---------ANNLNNKYNEIQEN------------------------KILIEKLRGKIDNYkkqiaeidsiIPDLKEITS 674
                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1242862547  477 ELNNINDAKEKTSNELDST-------KQKIETHIKNTKELQDKLTEVHKEL 520
Cdd:PRK01156   675 RINDIEDNLKKSRKALDDAkanrarlESTIEILRTRINELSDRINDINETL 725
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
211-404 1.38e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 42.83  E-value: 1.38e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  211 QTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIE 290
Cdd:COG4942     21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  291 AE--------RAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKnEFKEVESAYEREKQNTQESCAKLNLL 362
Cdd:COG4942    101 AQkeelaellRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAE-ELRADLAELAALRAELEAERAELEAL 179
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1242862547  363 EREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEE 404
Cdd:COG4942    180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
14-710 1.60e-03

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 43.04  E-value: 1.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   14 TQRLKNASLDVKQMLKNETESDIIADLRKKLHRAKKEKLEMTTKHNaELSSYESQIARLRSEVEKGEALRQRLEYDLAVA 93
Cdd:pfam02463  297 ELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEK-ELKELEIKREAEEEEEEELEKLQEKLEQLEEEL 375
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   94 RKEAGLGRRAAEERLAEAQRIQERLCAQNSELQGKA-----NEIEKTFQISQEKWREECRRFEHDLEERDNIIQNCNQEY 168
Cdd:pfam02463  376 LAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLelarqLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEK 455
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  169 ESLMQEKTRLQKTLQEILEKHEQEKTELESRV--RETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAE 246
Cdd:pfam02463  456 QELKLLKDELELKKSEDLLKETQLVKLQEQLEllLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLG 535
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  247 HMD--------CSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQ 318
Cdd:pfam02463  536 VAVenykvaisTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA 615
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  319 VEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEReyfSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSC 398
Cdd:pfam02463  616 DEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEK---SEVKASLSELTKELLEIQELQEKAESELAKE 692
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  399 GELQEELVMAKKHQAFLVETCENNVrELESILGSFSVSAQWTSGVHKDKDKPPSFSVVLETLRRTLTDYQNKLEDASNEL 478
Cdd:pfam02463  693 EILRRQLEIKKKEQREKEELKKLKL-EAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSL 771
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  479 NNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHK---ELSHLRAKCADREALITSLKVELQNVLHCWEKEKACA 555
Cdd:pfam02463  772 KEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKeeaELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKL 851
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  556 AQCESELQKLSQAFQKDSEEKLTFLHTLYQHLVAGCVLIKQPEGMLDKFSWSELCAVLQENVDALIADLNRANEKIsHLE 635
Cdd:pfam02463  852 AEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEA-EIL 930
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1242862547  636 YICKNKSDTMRELQQTQEDTFNKVAEQIKAQESCWQKQKKELEFQYSELLLEVQRRAQKFQEI-AEKNSEKLNRIE 710
Cdd:pfam02463  931 LKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDeLEKERLEEEKKK 1006
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
482-712 1.93e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 42.06  E-value: 1.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  482 NDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVlhcwEKEKACAAQCESE 561
Cdd:COG4942     19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL----EAELAELEKEIAE 94
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  562 LQKLSQAFQKDSEEKLTFLHTLYQHlvAGCVLIKQPEGMLDKFS----WSELCAVLQENVDALIADLNRANEKISHLEYI 637
Cdd:COG4942     95 LRAELEAQKEELAELLRALYRLGRQ--PPLALLLSPEDFLDAVRrlqyLKYLAPARREQAEELRADLAELAALRAELEAE 172
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1242862547  638 CKNKSDTMRELQQTQEDTFNKVAEQIKAQESCwQKQKKELEFQYSELLLEVQRRAQKFQEIAEKNSEKLNRIETS 712
Cdd:COG4942    173 RAELEALLAELEEERAALEALKAERQKLLARL-EKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
176-412 1.99e-03

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 42.65  E-value: 1.99e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  176 TRLQKTLQEILEKHEQEKTELESRVRETALGEFRLQTEEWEAER--RELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDL 253
Cdd:pfam02463  165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKalEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQE 244
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  254 LRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEA---ERAAHLESKFNSEIIQLRIRDlegaLQVEKASQAEAVAD 330
Cdd:pfam02463  245 LLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKlqeEELKLLAKEEEELKSELLKLE----RRKVDDEEKLKESE 320
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  331 LEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKK 410
Cdd:pfam02463  321 KEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 400

                   ..
gi 1242862547  411 HQ 412
Cdd:pfam02463  401 SE 402
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
123-523 2.25e-03

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 461677 [Multi-domain]  Cd Length: 660  Bit Score: 42.42  E-value: 2.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  123 SELQGKANEIEKTFQISQEKWREECRRFEHdLEERDNIIQNCNQEyeslMQEKTRLQKTLQEILEKHEQEKTELESRVRE 202
Cdd:pfam05557   30 IELEKKASALKRQLDRESDRNQELQKRIRL-LEKREAEAEEALRE----QAELNRLKKKYLEALNKKLNEKESQLADARE 104
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  203 TA------LGEFRLQTEEWEAERRELQLIVQ-------EQDSAVQSMQKKVEQLEAEHMDCSDlLRRQTSELEFSTQREE 269
Cdd:pfam05557  105 VIsclkneLSELRRQIQRAELELQSTNSELEelqerldLLKAKASEAEQLRQNLEKQQSSLAE-AEQRIKELEFEIQSQE 183
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  270 R---LRKEFEATTLRVRKLEENIEA--ERAAHL-ESKFNSEIIQLRIRDLEGALQVEKASQAEAVA---DLEMIKNEFKE 340
Cdd:pfam05557  184 QdseIVKNSKSELARIPELEKELERlrEHNKHLnENIENKLLLKEEVEDLKRKLEREEKYREEAATlelEKEKLEQELQS 263
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  341 VES--------------AYEREKQNTQEscaKLNLLEREYFSQN---------KKLNEEIEDQKKVIIDLSKRLQYNEKS 397
Cdd:pfam05557  264 WVKlaqdtglnlrspedLSRRIEQLQQR---EIVLKEENSSLTSsarqlekarRELEQELAQYLKKIEDLNKKLKRHKAL 340
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  398 CGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQWTSG---VHKDKDKPPSFSVVLETLRRTLTDYQNKLEDA 474
Cdd:pfam05557  341 VRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLERIEEAedmTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTL 420
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1242862547  475 SNEL-----NNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHL 523
Cdd:pfam05557  421 ERELqalrqQESLADPSYSKEEVDSLRRKLETLELERQRLREQKNELEMELERR 474
PRK11281 PRK11281
mechanosensitive channel MscK;
977-1143 2.25e-03

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 42.59  E-value: 2.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  977 KSTAALQKQIFGFTQRLhaaeverRSLRLEVTEYKRTVHEMKKELDKSQS---LQTQLNEfkhskliTHEKFESACEELN 1053
Cdd:PRK11281    80 EETEQLKQQLAQAPAKL-------RQAQAELEALKDDNDEETRETLSTLSlrqLESRLAQ-------TLDQLQNAQNDLA 145
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547 1054 --NALLREQQ-----AQMLLNEQAQQLQELNYRLELHSSEEADKN---QTLGEAVKSLSEAKMELRRKD-------QSLR 1116
Cdd:PRK11281   146 eyNSQLVSLQtqperAQAALYANSQRLQQIRNLLKGGKVGGKALRpsqRVLLQAEQALLNAQNDLQRKSlegntqlQDLL 225
                          170       180
                   ....*....|....*....|....*..
gi 1242862547 1117 QLNRHLTQLEQDkrRLEENIRDAESAL 1143
Cdd:PRK11281   226 QKQRDYLTARIQ--RLEHQLQLLQEAI 250
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
28-500 2.27e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 42.31  E-value: 2.27e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   28 LKNETESDIIADLRKKLHRAKKEKLEMTTkhnaELSSYESQIARLRSEVEKGEALRQRLEydlavarkeaglgrraaeer 107
Cdd:TIGR04523  300 LNNQKEQDWNKELKSELKNQEKKLEEIQN----QISQNNKIISQLNEQISQLKKELTNSE-------------------- 355
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  108 lAEAQRIQERLCAQNSELQGKANEIEKTFQiSQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILE 187
Cdd:TIGR04523  356 -SENSEKQRELEEKQNEIEKLKKENQSYKQ-EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKE 433
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  188 KHEQEKTELESRVRETAlgEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEhmdcsdlLRRQTSELEFSTQR 267
Cdd:TIGR04523  434 TIIKNNSEIKDLTNQDS--VKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKE-------LKSKEKELKKLNEE 504
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  268 EERLRKEFEATTLRVRKLEENIEaeraahlesKFNSEI--IQLRIRDLEGalqvekasqaeavadlEMIKNEFKEVESAY 345
Cdd:TIGR04523  505 KKELEEKVKDLTKKISSLKEKIE---------KLESEKkeKESKISDLED----------------ELNKDDFELKKENL 559
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  346 EREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLV-------ET 418
Cdd:TIGR04523  560 EKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSsiiknikSK 639
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  419 CENNVRELESILGSF-SVSAQWTSGVHKDKD----------------KPPSFSVVLETLRRTLTDYQNKLEDASNELNNI 481
Cdd:TIGR04523  640 KNKLKQEVKQIKETIkEIRNKWPEIIKKIKEsktkiddiielmkdwlKELSLHYKKYITRMIRIKDLPKLEEKYKEIEKE 719
                          490
                   ....*....|....*....
gi 1242862547  482 NDAKEKTSNELDSTKQKIE 500
Cdd:TIGR04523  720 LKKLDEFSKELENIIKNFN 738
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
14-587 2.33e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 42.26  E-value: 2.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   14 TQRLKNASLDVKQMLKNETESdiIADLRKKLHRAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYD---- 89
Cdd:TIGR00618  200 TLRSQLLTLCTPCMPDTYHER--KQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRaqea 277
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   90 -LAVARKEAGLGRRAAE--ERLAEAQRIQERLCAQNSELQGKANEIEKTFQ-----ISQEKWREECRRFEHDLEERDNII 161
Cdd:TIGR00618  278 vLEETQERINRARKAAPlaAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMkraahVKQQSSIEEQRRLLQTLHSQEIHI 357
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  162 QNCNQE----YESLMQEKTRLQ--KTLQEILEKHEQE----KTELESRVRETALGEFRLQTE----------EWEAERRE 221
Cdd:TIGR00618  358 RDAHEVatsiREISCQQHTLTQhiHTLQQQKTTLTQKlqslCKELDILQREQATIDTRTSAFrdlqgqlahaKKQQELQQ 437
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  222 LQLIVQEQDSAVQSMQKKVEQLEAEHMDCS-DLLRRQTSELEFSTQREERLRKEFEATTLRVRKLE---ENIEAERAAHL 297
Cdd:TIGR00618  438 RYAELCAAAITCTAQCEKLEKIHLQESAQSlKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPcplCGSCIHPNPAR 517
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  298 ESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAK-----------LNLLER-- 364
Cdd:TIGR00618  518 QDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCdnrskedipnlQNITVRlq 597
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  365 ---------------EYFSQNKKLNEEIEDQKKVIID--LSKRLQYNEKSCGELQEELVMAKKHQAFLV------ETCEN 421
Cdd:TIGR00618  598 dlteklseaedmlacEQHALLRKLQPEQDLQDVRLHLqqCSQELALKLTALHALQLTLTQERVREHALSirvlpkELLAS 677
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  422 NVRELESILGSFSVSAQWTSGVHKDKDKPPSFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDS---TKQK 498
Cdd:TIGR00618  678 RQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHqarTVLK 757
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  499 IETHIKNTKELQ--------DKLTEVHKELSHLRAKCADREALITSLKVELQNvlHCWEKEKACAAQCESELQKLSQAFQ 570
Cdd:TIGR00618  758 ARTEAHFNNNEEvtaalqtgAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQ--EIPSDEDILNLQCETLVQEEEQFLS 835
                          650
                   ....*....|....*..
gi 1242862547  571 KdSEEKLTFLHTLYQHL 587
Cdd:TIGR00618  836 R-LEEKSATLGEITHQL 851
PRK09039 PRK09039
peptidoglycan -binding protein;
50-160 2.44e-03

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 41.88  E-value: 2.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   50 EKLEMTTKHNAELssyESQIARLRSEVEKGEALRQRLEYDLA-VARKEAGLGRRAAE--ERLAEAQRIQER-------LC 119
Cdd:PRK09039    67 DLLSLERQGNQDL---QDSVANLRASLSAAEAERSRLQALLAeLAGAGAAAEGRAGElaQELDSEKQVSARalaqvelLN 143
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1242862547  120 AQNSELQGKANEIEKTFQISQEKWREECRRFEhDLEERDNI 160
Cdd:PRK09039   144 QQIAALRRQLAALEAALDASEKRDRESQAKIA-DLGRRLNV 183
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
53-379 2.62e-03

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 42.47  E-value: 2.62e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   53 EMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAglgrRAAEERLAEAQRIQERLCAQNSELQGKANEI 132
Cdd:pfam01576  349 EMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAEL----RTLQQAKQDSEHKRKKLEGQLQELQARLSES 424
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  133 EKTFQISQE---KWREECRRFEHDLEERDNIIQNCNQEYESLmqeKTRLQKTlQEILEKHEQEKTELESRVR--ETALGE 207
Cdd:pfam01576  425 ERQRAELAEklsKLQSELESVSSLLNEAEGKNIKLSKDVSSL---ESQLQDT-QELLQEETRQKLNLSTRLRqlEDERNS 500
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  208 FRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEE 287
Cdd:pfam01576  501 LQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQ 580
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  288 NIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEReyf 367
Cdd:pfam01576  581 ELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELER--- 657
                          330
                   ....*....|..
gi 1242862547  368 sQNKKLNEEIED 379
Cdd:pfam01576  658 -TNKQLRAEMED 668
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
40-279 2.73e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 42.03  E-value: 2.73e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   40 LRKKLHRAKKEKLeMTTKHNAELSSYESQIARLRSEVEKGealRQRleydlAVARKEAGLGRRAAEERLAEAQRIQ--ER 117
Cdd:pfam17380  394 VRQELEAARKVKI-LEEERQRKIQQQKVEMEQIRAEQEEA---RQR-----EVRRLEEERAREMERVRLEEQERQQqvER 464
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  118 LCAQNSELQGKANEIEKTFQISQEKWREECRRFEHDLEERdniiqncnqeyESLMQEKTRLQKTLQEILEkhEQEKTELE 197
Cdd:pfam17380  465 LRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEER-----------KQAMIEEERKRKLLEKEME--ERQKAIYE 531
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  198 SRVRETALGEFRLQTEEWEAERRELQL-IVQEQDSAVQSMQKKVEQLeaehmdcsdllrRQTSElefstqrEERLRKEFE 276
Cdd:pfam17380  532 EERRREAEEERRKQQEMEERRRIQEQMrKATEERSRLEAMEREREMM------------RQIVE-------SEKARAEYE 592

                   ...
gi 1242862547  277 ATT 279
Cdd:pfam17380  593 ATT 595
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
61-222 2.78e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 41.06  E-value: 2.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   61 ELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAglgrRAAEERLAEAQRIQERLCAQNSELQGKANEIEKtfQISQ 140
Cdd:COG1579     11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARL----EAAKTELEDLEKEIKRLELEIEEVEARIKKYEE--QLGN 84
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  141 EKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTELESRV--RETALGEFRLQTEEWEAE 218
Cdd:COG1579     85 VRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKaeLDEELAELEAELEELEAE 164

                   ....
gi 1242862547  219 RREL 222
Cdd:COG1579    165 REEL 168
mukB PRK04863
chromosome partition protein MukB;
28-244 3.00e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 42.25  E-value: 3.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   28 LKNETESDIIADLRKKLHRAKKEKLEMTtKHNAELSSYESQIARLRSEVEKGEALRQrlEYDLAVARKE---------AG 98
Cdd:PRK04863   887 LADETLADRVEEIREQLDEAEEAKRFVQ-QHGNALAQLEPIVSVLQSDPEQFEQLKQ--DYQQAQQTQRdakqqafalTE 963
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   99 LGRRAAEERLAEAQRIQERLCAQNSELQGKaneiektfqisQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRL 178
Cdd:PRK04863   964 VVQRRAHFSYEDAAEMLAKNSDLNEKLRQR-----------LEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAK 1032
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1242862547  179 QKTLQEIlekhEQEKTELESRVRETALGEFRLQTEEWEAE-------RRELQLIVQEQDSAVQSMQKKVEQLE 244
Cdd:PRK04863  1033 RQMLQEL----KQELQDLGVPADSGAEERARARRDELHARlsanrsrRNQLEKQLTFCEAEMDNLTKKLRKLE 1101
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
986-1151 3.22e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.82  E-value: 3.22e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  986 IFGFT--QRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKSQSLQTQLnefkhsklithekfeSACEELNNALLREQQAQ 1063
Cdd:COG4913    603 VLGFDnrAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAL---------------QRLAEYSWDEIDVASAE 667
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547 1064 MLLNEQAQQLQELnyrlelhsseEADkNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDAESAL 1143
Cdd:COG4913    668 REIAELEAELERL----------DAS-SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL 736

                   ....*...
gi 1242862547 1144 RMAAKDKE 1151
Cdd:COG4913    737 EAAEDLAR 744
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
183-825 3.41e-03

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 42.02  E-value: 3.41e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  183 QEILEKHEQEKTELESRVRETALGEFRlQTEEW----EAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCS------- 251
Cdd:pfam05483   62 QEGLKDSDFENSEGLSRLYSKLYKEAE-KIKKWkvsiEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSlkleeei 140
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  252 ----DLLRRQTSELEF----------STQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRI-----RD 312
Cdd:pfam05483  141 qenkDLIKENNATRHLcnllketcarSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMhfklkED 220
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  313 LEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNT---QESCAKLNLLEREYFSQNKKLNEEIEDQ---KKVIID 386
Cdd:pfam05483  221 HEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTfllEESRDKANQLEEKTKLQDENLKELIEKKdhlTKELED 300
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  387 LSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQwtsgvhkdkdkppSFSVVLETLRRTLTD 466
Cdd:pfam05483  301 IKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVT-------------EFEATTCSLEELLRT 367
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  467 YQNKLEDASNELNNINDAKEKTSNELDSTkqkieTHIKNTKELqdkltevhkELSHLRAKCADREALITSLKVelqnvlh 546
Cdd:pfam05483  368 EQQRLEKNEDQLKIITMELQKKSSELEEM-----TKFKNNKEV---------ELEELKKILAEDEKLLDEKKQ------- 426
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  547 cWEKEKACAAQCESELQKLSQAFQK---DSEEKLTFLHTLYQHlvagcvLIKQPEGMLDKFSWSELCAV-LQENVDALIA 622
Cdd:pfam05483  427 -FEKIAEELKGKEQELIFLLQAREKeihDLEIQLTAIKTSEEH------YLKEVEDLKTELEKEKLKNIeLTAHCDKLLL 499
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  623 DlnraNEKIShleyicKNKSDTMRELQQTQEDTFNKvaeqiKAQESCWQKQKKELEFQYSELLLEVQRRAQKFQEIAEKN 702
Cdd:pfam05483  500 E----NKELT------QEASDMTLELKKHQEDIINC-----KKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEV 564
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  703 SEKLNRIETSHEQLVRENSHFKTTLSRTQREQTCLLAACALMAGALCPLYSRSCALSTQRDFLQEQVNSLEL----FKLE 778
Cdd:pfam05483  565 KCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIkvnkLELE 644
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....*..
gi 1242862547  779 IRTLAQALSAVDEKKQEEAKTKKKTFKGLVRVFRKGVIAILAANRLK 825
Cdd:pfam05483  645 LASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQ 691
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
1004-1171 4.04e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.46  E-value: 4.04e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547 1004 RLEVTEYKRTVHEMKKELDKSQSLQTQLNEFKhsklithekfesacEELNNALLREQQAQMLLNEQAQQLQELNYRLELH 1083
Cdd:COG1196    221 ELKELEAELLLLKLRELEAELEELEAELEELE--------------AELEELEAELAELEAELEELRLELEELELELEEA 286
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547 1084 SSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDAESALRMAAKDKECVANHMRTIENM 1163
Cdd:COG1196    287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366

                   ....*...
gi 1242862547 1164 LHKVRDQI 1171
Cdd:COG1196    367 LLEAEAEL 374
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
990-1151 4.44e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.46  E-value: 4.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  990 TQRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKSQSLQTQLNEfkhskliTHEKFESACEELNNALLREQQAQMLLNEQ 1069
Cdd:COG1196    238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELEL-------ELEEAQAEEYELLAELARLEQDIARLEER 310
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547 1070 AQQLQELNYRLELhssEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDAESALRMAAKD 1149
Cdd:COG1196    311 RRELEERLEELEE---ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387

                   ..
gi 1242862547 1150 KE 1151
Cdd:COG1196    388 LL 389
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
101-285 5.17e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 41.16  E-value: 5.17e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  101 RRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTFQISQEKWREEcrrfehDLEERDNI----IQNCNQEYESLMQEKT 176
Cdd:COG3206    163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLV------DLSEEAKLllqqLSELESQLAEARAELA 236
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  177 RLQKTLQEILEKHEQEKTELESRVRETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAE-HMDCSDLLR 255
Cdd:COG3206    237 EAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQlQQEAQRILA 316
                          170       180       190
                   ....*....|....*....|....*....|
gi 1242862547  256 RQTSELEFSTQREERLRKEFEATTLRVRKL 285
Cdd:COG3206    317 SLEAELEALQAREASLQAQLAQLEARLAEL 346
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
35-223 5.56e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 41.21  E-value: 5.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   35 DIIADLRKKLHRAKKEKlemtTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRI 114
Cdd:TIGR02169  308 RSIAEKERELEDAEERL----AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  115 QERLCAQNSELQGKANEIEKtFQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQ----------KTLQE 184
Cdd:TIGR02169  384 RDELKDYREKLEKLKREINE-LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAleikkqewklEQLAA 462
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 1242862547  185 ILEKHEQEKTELESRVR--ETALGEFRLQTEEWEAERRELQ 223
Cdd:TIGR02169  463 DLSKYEQELYDLKEEYDrvEKELSKLQRELAEAEAQARASE 503
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
8-412 5.99e-03

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 40.93  E-value: 5.99e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547    8 NATPGDTQRLKNASLDVKQMLKNETES--DIIADLRKKLHRAKKEklemttkhnaeLSSYESQIARLRSEVEkgEALRQR 85
Cdd:pfam01576  418 QARLSESERQRAELAEKLSKLQSELESvsSLLNEAEGKNIKLSKD-----------VSSLESQLQDTQELLQ--EETRQK 484
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   86 LEYDLAVARKEAGlgRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTFQ---ISQEKWREECRRFEHDLEERDNIIQ 162
Cdd:pfam01576  485 LNLSTRLRQLEDE--RNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEedaGTLEALEEGKKRLQRELEALTQQLE 562
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  163 NCNQEYESLMQEKTRLQKTLQEI-------------LEK--------------------HEQEKTELESRVRET------ 203
Cdd:pfam01576  563 EKAAAYDKLEKTKNRLQQELDDLlvdldhqrqlvsnLEKkqkkfdqmlaeekaisaryaEERDRAEAEAREKETralsla 642
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  204 -ALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEhmdcSDLLRRQTSELEfsTQREErLRKEFEATTLRV 282
Cdd:pfam01576  643 rALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERS----KRALEQQVEEMK--TQLEE-LEDELQATEDAK 715
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  283 RKLEENIEAERAAHLESKFNSE--------IIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQE 354
Cdd:pfam01576  716 LRLEVNMQALKAQFERDLQARDeqgeekrrQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREE 795
                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1242862547  355 SCAKLNLLEREYFSQNKKLNEEIEDQKKVII---DLSKRLQYNEKSCGELQEELVMAKKHQ 412
Cdd:pfam01576  796 AVKQLKKLQAQMKDLQRELEEARASRDEILAqskESEKKLKNLEAELLQLQEDLAASERAR 856
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
485-826 6.02e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.08  E-value: 6.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  485 KEKTSNELDSTKQKIEthikntkELQDKLTEVHKELSHLRA-----------KCADREALITSLKVELQNVLHCWEKEKA 553
Cdd:COG1196    174 KEEAERKLEATEENLE-------RLEDILGELERQLEPLERqaekaeryrelKEELKELEAELLLLKLRELEAELEELEA 246
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  554 CAAQCESELQKLSQAFQKDSEEKLTFLHTLYQhlvagcvlikqpegmldkfswselcavLQENVDALIADLNRANEKISH 633
Cdd:COG1196    247 ELEELEAELEELEAELAELEAELEELRLELEE---------------------------LELELEEAQAEEYELLAELAR 299
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  634 LEYICKNKSDTMRELQQTQEDTfNKVAEQIKAQESCWQKQKKELEFQYSELLLEVQRRAQKFQEIAEKNSEKLNRIETSH 713
Cdd:COG1196    300 LEQDIARLEERRRELEERLEEL-EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  714 EQLVRENSHFKTTLSRTQREQTCLLAACALMAGALcplySRSCALSTQRDFLQEQVNSLELFKLEIRTLAQALSAVDEKK 793
Cdd:COG1196    379 EELEELAEELLEALRAAAELAAQLEELEEAEEALL----ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
                          330       340       350
                   ....*....|....*....|....*....|...
gi 1242862547  794 QEEAKTKKKTFKGLVRVFRKGVIAILAANRLKL 826
Cdd:COG1196    455 EEEEEALLELLAELLEEAALLEAALAELLEELA 487
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
180-343 7.75e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 40.67  E-value: 7.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  180 KTLQEILEKHEQEKTELESRVRETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCS----DLLR 255
Cdd:COG4913    265 AAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgdrlEQLE 344
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  256 RQTSELEFSTQREERLRKEFEAttlRVRKLEENIEAERAAHLEskfNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIK 335
Cdd:COG4913    345 REIERLERELEERERRRARLEA---LLAALGLPLPASAEEFAA---LRAEAAALLEALEEELEALEEALAEAEAALRDLR 418

                   ....*...
gi 1242862547  336 NEFKEVES 343
Cdd:COG4913    419 RELRELEA 426
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
69-716 8.25e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 40.59  E-value: 8.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547   69 IARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERlcaqnselQGKANEIEKTFQISQEKWREECR 148
Cdd:pfam12128  233 IAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEER--------QETSAELNQLLRTLDDQWKEKRD 304
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  149 RFEHDLEERDNIIQNCNQEYESLMQEKTRLQK----TLQEILEKHEQEKTELESRVRETALGEFRLQTEEWEAERRElQL 224
Cdd:pfam12128  305 ELNGELSAADAAVAKDRSELEALEDQHGAFLDadieTAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRR-SK 383
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  225 IVQEQDSAVQSMQKKV----EQLEAEHMDCSDLLRRQTSElefstqreerLRKEFEATTLRVRKLEENIEaERAAHL--- 297
Cdd:pfam12128  384 IKEQNNRDIAGIKDKLakirEARDRQLAVAEDDLQALESE----------LREQLEAGKLEFNEEEYRLK-SRLGELklr 452
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  298 --------ESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQ 369
Cdd:pfam12128  453 lnqatatpELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQ 532
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  370 NKKLNEEiedqkkviidLSKRLQYNEKSCGELQEelvmakkhQAFLVETCENNVRELESILGSFSVsaqWTSGVHKDKDK 449
Cdd:pfam12128  533 AGTLLHF----------LRKEAPDWEQSIGKVIS--------PELLHRTDLDPEVWDGSVGGELNL---YGVKLDLKRID 591
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  450 PPSFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIE---THIKNTKELQDKLTEVHKELShlRAK 526
Cdd:pfam12128  592 VPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETfarTALKNARLDLRRLFDEKQSEK--DKK 669
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  527 CADREALITSLKVELQNVlhcwEKEKacaAQCESELQKLSQAFQKDSEEKLTFLHTLYQHLV----AGCVLIKQPEGMLD 602
Cdd:pfam12128  670 NKALAERKDSANERLNSL----EAQL---KQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEgaldAQLALLKAAIAARR 742
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242862547  603 KFSWSELCAVLQENVDAL---------IADLNRANEK-ISHLEYICKNKSDtMRELQQTQEDTFNKVAEQIKAQESCWQK 672
Cdd:pfam12128  743 SGAKAELKALETWYKRDLaslgvdpdvIAKLKREIRTlERKIERIAVRRQE-VLRYFDWYQETWLQRRPRLATQLSNIER 821
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....
gi 1242862547  673 QKKELEFQYSELLLEVQRRAQKFQEIAEKNSEKLNRIETSHEQL 716
Cdd:pfam12128  822 AISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGL 865
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
457-530 9.03e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 40.20  E-value: 9.03e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1242862547  457 LETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADR 530
Cdd:COG3883     18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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