NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1233730816|ref|NP_001341625|]
View 

selenocysteine insertion sequence-binding protein 2 isoform 5 [Homo sapiens]

Protein Classification

ribosomal L7Ae/L30e/S12e/Gadd45 family protein( domain architecture ID 10472466)

ribosomal L7Ae/L30e/S12e/Gadd45 family protein belongs to a family of K-turn-binding proteins that are important in ribosome structure, the site-specific modification of RNA, and spliceosome assembly

CATH:  3.30.1330.30
Gene Ontology:  GO:0003735|GO:0042274
PubMed:  24149842|24524803|7622064

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
 618-718 3.81e-16

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


:

Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 74.17  E-value: 3.81e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233730816 618 DRMYQKDPVKAKTKRrLVLGLREVLKHLKLKKLKCVIISPNCEKIQSKGglddtlhTIIDYACEQNIPFVFALNRKALGR 697
Cdd:pfam01248   1 DAIYEVLKKALKTGK-LVLGLKEVTKALERGEAKLVIIAEDCDPEEKVK-------LIPALCKEKNVPYVKVPSKKELGE 72

                          90       100
                  ....*....|....*....|.
gi 1233730816 698 SLNKAVPVSVVGIFSYDGAQD 718
Cdd:pfam01248  73 ACGKKRPVSALAIKDEGDSKI 93
 
Name Accession Description Interval E-value
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
 618-718 3.81e-16

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 74.17  E-value: 3.81e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233730816 618 DRMYQKDPVKAKTKRrLVLGLREVLKHLKLKKLKCVIISPNCEKIQSKGglddtlhTIIDYACEQNIPFVFALNRKALGR 697
Cdd:pfam01248   1 DAIYEVLKKALKTGK-LVLGLKEVTKALERGEAKLVIIAEDCDPEEKVK-------LIPALCKEKNVPYVKVPSKKELGE 72

                          90       100
                  ....*....|....*....|.
gi 1233730816 698 SLNKAVPVSVVGIFSYDGAQD 718
Cdd:pfam01248  73 ACGKKRPVSALAIKDEGDSKI 93
 
Name Accession Description Interval E-value
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
 618-718 3.81e-16

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 74.17  E-value: 3.81e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233730816 618 DRMYQKDPVKAKTKRrLVLGLREVLKHLKLKKLKCVIISPNCEKIQSKGglddtlhTIIDYACEQNIPFVFALNRKALGR 697
Cdd:pfam01248   1 DAIYEVLKKALKTGK-LVLGLKEVTKALERGEAKLVIIAEDCDPEEKVK-------LIPALCKEKNVPYVKVPSKKELGE 72

                          90       100
                  ....*....|....*....|.
gi 1233730816 698 SLNKAVPVSVVGIFSYDGAQD 718
Cdd:pfam01248  73 ACGKKRPVSALAIKDEGDSKI 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH