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progesterone-induced-blocking factor 1 isoform 1 [Homo sapiens]
Protein Classification
coiled-coil domain-containing protein ( domain architecture ID 1000037 )
coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership
List of domain hits
Name
Accession
Description
Interval
E-value
SMC_prok_B super family
cl37069 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
208-567
1.61e-08
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
TIGR02168 :Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 58.53
E-value: 1.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 208 LAE EL STNKNQ L K --- QLT E T Y E E DRKNYS E VQ ircqr LAL ELADTKQ L iqqgdyr Q E NYDKVKS E RDAL E Q E VI EL RRK 284
Cdd:TIGR02168 194 ILN EL ERQLKS L E rqa EKA E R Y K E LKAELR E LE ----- LAL LVLRLEE L ------- R E ELEELQE E LKEA E E E LE EL TAE 261
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 285 HEI LE ASHMIQTK E R SEL SK E VVT L EQTVTL L QKDKEY L NR Q NME L SV R C A HE E DR LE R L Q AQLEE SKKARE E MY E K yva 364
Cdd:TIGR02168 262 LQE LE EKLEELRL E V SEL EE E IEE L QKELYA L ANEISR L EQ Q KQI L RE R L A NL E RQ LE E L E AQLEE LESKLD E LA E E --- 338
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 365 srdhyktey ENK L HDE LE QIRLKTNQEIDQ L RNASR E MY E R E N R SGGW E V Q YLR tgiwqepshyiiiwhk A R RNLREAR d 444
Cdd:TIGR02168 339 --------- LAE L EEK LE ELKEELESLEAE L EELEA E LE E L E S R LEEL E E Q LET ---------------- L R SKVAQLE - 392
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 445 nava EKERAVMA E KDA LE KHDQL L DRY RE LQLSTESK vtefl HQS KL KSF E SERV Q LLQ EE TARN L TQC Q L E C E KYQKK L 524
Cdd:TIGR02168 393 ---- LQIASLNN E IER LE ARLER L EDR RE RLQQEIEE ----- LLK KL EEA E LKEL Q AEL EE LEEE L EEL Q E E L E RLEEA L 463
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1164769123 525 E V L TK E F yslq ASS E KRITELQAQNSEH QARLD IY E K L EKE L D 567
Cdd:TIGR02168 464 E E L RE E L ---- EEA E QALDAAERELAQL QARLD SL E R L QEN L E 502
SMC_N super family
cl47134 RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
32-355
2.62e-06
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
TIGR02169 :Pssm-ID: 481474 [Multi-domain]
Cd Length: 1164
Bit Score: 51.22
E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 32 D D I SSSE E REG K VRITRQLI E RK E L lh NI QL L KIELSQ K TMMIDN L KVDYLTKIE -- E L EEKLNDA --- LHQ K QLLT L R - 105
Cdd:TIGR02169 160 D E I AGVA E FDR K KEKALEEL E EV E E -- NI ER L DLIIDE K RQQLER L RREREKAER yq A L LKEKREY egy ELL K EKEA L E r 237
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 106 ---- LDN QLA FQQKDAS K YQ E LMKQEMETILLRQKQ LEE T N LQLREKAGD ---- V RRNLRDF E LTEEQYIKLK A FP E DQ L 177
Cdd:TIGR02169 238 qkea IER QLA SLEEELE K LT E EISELEKRLEEIEQL LEE L N KKIKDLGEE eqlr V KEKIGEL E AEIASLERSI A EK E RE L 317
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 178 SIP E YVSVRFYELVNP L RK EI C E lqvkkni L AE E LSTNKNQLKQ LTE T Y E E DRKNYSEVQIRCQRLAL E L A D T KQLIQQ g 257
Cdd:TIGR02169 318 EDA E ERLAKLEAEIDK L LA EI E E ------- L ER E IEEERKRRDK LTE E Y A E LKEELEDLRAELEEVDK E F A E T RDELKD - 389
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 258 dy RQ E NYD K V K S E RDA L -------------- EQ E VIE L RRKHEIL EA SHMIQTK E RSELSK E VVTL E QTVTL L QK D KEYL 323
Cdd:TIGR02169 390 -- YR E KLE K L K R E INE L kreldrlqeelqrl SE E LAD L NAAIAGI EA KINELEE E KEDKAL E IKKQ E WKLEQ L AA D LSKY 467
330 340 350
....*....|....*....|....*....|..
gi 1164769123 324 NRQNME L SVRCAHE E DR L ER LQ AQ L E E SKKAR 355
Cdd:TIGR02169 468 EQELYD L KEEYDRV E KE L SK LQ RE L A E AEAQA 499
Smc super family
cl34174 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
433-723
4.80e-06
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
COG1196 :Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 50.32
E-value: 4.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 433 HK A R R N L REARD N ---------------------- AV AE KE R AVMA E KDA LE k HDQ LL DRY REL Q lste SKVT E FLHQSK 490
Cdd:COG1196 175 EE A E R K L EATEE N lerledilgelerqleplerqa EK AE RY R ELKE E LKE LE - AEL LL LKL REL E ---- AELE E LEAELE 249
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 491 LKSF E S E RVQLLQE E TARN L TQCQ LE C E KYQKK LE VLTK E F Y S L Q A SSEKRITELQAQNSEHQARLDIY E K LE K EL D E II 570
Cdd:COG1196 250 ELEA E L E ELEAELA E LEAE L EELR LE L E ELELE LE EAQA E E Y E L L A ELARLEQDIARLEERRRELEERL E E LE E EL A E LE 329
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 571 MQTA E I E N E D E AER vlfsygyg ANVPTTAKRRLKQSVH LA RRVLQ L EKQNSLILKDL E HRKDQVTQ L SQE L DR A NS L LN Q 650
Cdd:COG1196 330 EELE E L E E E L E ELE -------- EELEEAEEELEEAEAE LA EAEEA L LEAEAELAEAE E ELEELAEE L LEA L RA A AE L AA Q 401
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1164769123 651 TQQ pyry L I E SVRQRDSKIDS L T E SIAQ LE KDVSN L NK E KSALLQTKNQM A LDLEQ L LNHR E E L AAMKQI L VK 723
Cdd:COG1196 402 LEE ---- L E E AEEALLERLER L E E ELEE LE EALAE L EE E EEEEEEALEEA A EEEAE L EEEE E A L LELLAE L LE 470
Name
Accession
Description
Interval
E-value
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
208-567
1.61e-08
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 58.53
E-value: 1.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 208 LAE EL STNKNQ L K --- QLT E T Y E E DRKNYS E VQ ircqr LAL ELADTKQ L iqqgdyr Q E NYDKVKS E RDAL E Q E VI EL RRK 284
Cdd:TIGR02168 194 ILN EL ERQLKS L E rqa EKA E R Y K E LKAELR E LE ----- LAL LVLRLEE L ------- R E ELEELQE E LKEA E E E LE EL TAE 261
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 285 HEI LE ASHMIQTK E R SEL SK E VVT L EQTVTL L QKDKEY L NR Q NME L SV R C A HE E DR LE R L Q AQLEE SKKARE E MY E K yva 364
Cdd:TIGR02168 262 LQE LE EKLEELRL E V SEL EE E IEE L QKELYA L ANEISR L EQ Q KQI L RE R L A NL E RQ LE E L E AQLEE LESKLD E LA E E --- 338
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 365 srdhyktey ENK L HDE LE QIRLKTNQEIDQ L RNASR E MY E R E N R SGGW E V Q YLR tgiwqepshyiiiwhk A R RNLREAR d 444
Cdd:TIGR02168 339 --------- LAE L EEK LE ELKEELESLEAE L EELEA E LE E L E S R LEEL E E Q LET ---------------- L R SKVAQLE - 392
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 445 nava EKERAVMA E KDA LE KHDQL L DRY RE LQLSTESK vtefl HQS KL KSF E SERV Q LLQ EE TARN L TQC Q L E C E KYQKK L 524
Cdd:TIGR02168 393 ---- LQIASLNN E IER LE ARLER L EDR RE RLQQEIEE ----- LLK KL EEA E LKEL Q AEL EE LEEE L EEL Q E E L E RLEEA L 463
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1164769123 525 E V L TK E F yslq ASS E KRITELQAQNSEH QARLD IY E K L EKE L D 567
Cdd:TIGR02168 464 E E L RE E L ---- EEA E QALDAAERELAQL QARLD SL E R L QEN L E 502
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
206-569
3.06e-07
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 54.17
E-value: 3.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 206 NILAE EL STNKNQ L K --- QLT E T Y E E DRKNYS E VQIRCQR L A L ELADTKQ -- L IQQGDYRQENYDKVKS E RDA LE Q E VI E 280
Cdd:COG1196 192 EDILG EL ERQLEP L E rqa EKA E R Y R E LKEELK E LEAELLL L K L RELEAEL ee L EAELEELEAELEELEA E LAE LE A E LE E 271
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 281 LR RKH E I LE ASHMIQTK E RS EL SK E VVT LEQ TVTL L QKDKEY L NRQNM EL SVRC A HE E DR LE R L QAQ LEE SKKAR EE mye 360
Cdd:COG1196 272 LR LEL E E LE LELEEAQA E EY EL LA E LAR LEQ DIAR L EERRRE L EERLE EL EEEL A EL E EE LE E L EEE LEE LEEEL EE --- 348
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 361 kyvasrdhykteyenk LHD ELE QIRLKTNQEIDQ L RN A SR E MY E R E NR sggwevqylrtgiwqepshyiiiwhkarrnl R 440
Cdd:COG1196 349 ---------------- AEE ELE EAEAELAEAEEA L LE A EA E LA E A E EE ------------------------------- L 381
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 441 E ARDNAVA E KE RA VMAEKDA LE KHDQLLDRYR E LQLST E SKVT E FLHQSKLKSF E S E RVQLLQ EE T A RNLTQCQL E C E KY 520
Cdd:COG1196 382 E ELAEELL E AL RA AAELAAQ LE ELEEAEEALL E RLERL E EELE E LEEALAELEE E E E EEEEAL EE A A EEEAELEE E E E AL 461
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1164769123 521 QKK L EV L TK E FYS L Q A SSEKRIT EL QAQNSEHQAR L DIYEKL E KE L DEI 569
Cdd:COG1196 462 LEL L AE L LE E AAL L E A ALAELLE EL AEAAARLLLL L EAEADY E GF L EGV 510
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
32-355
2.62e-06
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 51.22
E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 32 D D I SSSE E REG K VRITRQLI E RK E L lh NI QL L KIELSQ K TMMIDN L KVDYLTKIE -- E L EEKLNDA --- LHQ K QLLT L R - 105
Cdd:TIGR02169 160 D E I AGVA E FDR K KEKALEEL E EV E E -- NI ER L DLIIDE K RQQLER L RREREKAER yq A L LKEKREY egy ELL K EKEA L E r 237
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 106 ---- LDN QLA FQQKDAS K YQ E LMKQEMETILLRQKQ LEE T N LQLREKAGD ---- V RRNLRDF E LTEEQYIKLK A FP E DQ L 177
Cdd:TIGR02169 238 qkea IER QLA SLEEELE K LT E EISELEKRLEEIEQL LEE L N KKIKDLGEE eqlr V KEKIGEL E AEIASLERSI A EK E RE L 317
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 178 SIP E YVSVRFYELVNP L RK EI C E lqvkkni L AE E LSTNKNQLKQ LTE T Y E E DRKNYSEVQIRCQRLAL E L A D T KQLIQQ g 257
Cdd:TIGR02169 318 EDA E ERLAKLEAEIDK L LA EI E E ------- L ER E IEEERKRRDK LTE E Y A E LKEELEDLRAELEEVDK E F A E T RDELKD - 389
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 258 dy RQ E NYD K V K S E RDA L -------------- EQ E VIE L RRKHEIL EA SHMIQTK E RSELSK E VVTL E QTVTL L QK D KEYL 323
Cdd:TIGR02169 390 -- YR E KLE K L K R E INE L kreldrlqeelqrl SE E LAD L NAAIAGI EA KINELEE E KEDKAL E IKKQ E WKLEQ L AA D LSKY 467
330 340 350
....*....|....*....|....*....|..
gi 1164769123 324 NRQNME L SVRCAHE E DR L ER LQ AQ L E E SKKAR 355
Cdd:TIGR02169 468 EQELYD L KEEYDRV E KE L SK LQ RE L A E AEAQA 499
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
433-723
4.80e-06
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 50.32
E-value: 4.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 433 HK A R R N L REARD N ---------------------- AV AE KE R AVMA E KDA LE k HDQ LL DRY REL Q lste SKVT E FLHQSK 490
Cdd:COG1196 175 EE A E R K L EATEE N lerledilgelerqleplerqa EK AE RY R ELKE E LKE LE - AEL LL LKL REL E ---- AELE E LEAELE 249
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 491 LKSF E S E RVQLLQE E TARN L TQCQ LE C E KYQKK LE VLTK E F Y S L Q A SSEKRITELQAQNSEHQARLDIY E K LE K EL D E II 570
Cdd:COG1196 250 ELEA E L E ELEAELA E LEAE L EELR LE L E ELELE LE EAQA E E Y E L L A ELARLEQDIARLEERRRELEERL E E LE E EL A E LE 329
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 571 MQTA E I E N E D E AER vlfsygyg ANVPTTAKRRLKQSVH LA RRVLQ L EKQNSLILKDL E HRKDQVTQ L SQE L DR A NS L LN Q 650
Cdd:COG1196 330 EELE E L E E E L E ELE -------- EELEEAEEELEEAEAE LA EAEEA L LEAEAELAEAE E ELEELAEE L LEA L RA A AE L AA Q 401
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1164769123 651 TQQ pyry L I E SVRQRDSKIDS L T E SIAQ LE KDVSN L NK E KSALLQTKNQM A LDLEQ L LNHR E E L AAMKQI L VK 723
Cdd:COG1196 402 LEE ---- L E E AEEALLERLER L E E ELEE LE EALAE L EE E EEEEEEALEEA A EEEAE L EEEE E A L LELLAE L LE 470
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
433-763
6.93e-05
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 46.59
E-value: 6.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 433 HKAR R N L REA R D N ------ AVA E K ER AV --- MAEKDAL E KHDQ L LDRY REL Q L STESKVT E F L HQSKLKSF E S - ERVQLL 502
Cdd:TIGR02168 175 KETE R K L ERT R E N ldrled ILN E L ER QL ksl ERQAEKA E RYKE L KAEL REL E L ALLVLRL E E L REELEELQ E E l KEAEEE 254
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 503 Q EE TARN L TQCQLEC E ------- KYQKKL E V L T KE F Y S L QA ssek R I TE L QA Q NSEHQA RL DIY E KLEK EL DEIIMQTAE 575
Cdd:TIGR02168 255 L EE LTAE L QELEEKL E elrlevs ELEEEI E E L Q KE L Y A L AN ---- E I SR L EQ Q KQILRE RL ANL E RQLE EL EAQLEELES 330
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 576 IEN E DEA E rvlfsygyganvptt AKRRLKQSVH L ARRVLQ LE KQNSLILKD LE HRKDQVTQ L SQE L DRAN S LLN Q TQQPY 655
Cdd:TIGR02168 331 KLD E LAE E --------------- LAELEEKLEE L KEELES LE AELEELEAE LE ELESRLEE L EEQ L ETLR S KVA Q LELQI 395
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 656 RY L IESVRQRDSKIDS L TESIAQ L EKDVSN L N K EKSALLQTKN Q MA L DL -- E Q L LNHR EEL AAMKQI L VKMHSKHS E NSL 733
Cdd:TIGR02168 396 AS L NNEIERLEARLER L EDRRER L QQEIEE L L K KLEEAELKEL Q AE L EE le E E L EELQ EEL ERLEEA L EELREELE E AEQ 475
330 340 350
....*....|....*....|....*....|
gi 1164769123 734 L L TKT E PKHVTENQKSKT L NVPK E HEDNIF 763
Cdd:TIGR02168 476 A L DAA E RELAQLQARLDS L ERLQ E NLEGFS 505
PRK03918
PRK03918 DNA double-strand break repair ATPase Rad50;
124-566
7.16e-04
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain]
Cd Length: 880
Bit Score: 43.13
E-value: 7.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 124 MKQ E M E TI L LRQKQLEETNLQ LRE KAGDVRRNLRDF E LTE E QYIK L KA fped Q L SIP E YVSVRFY E LVNP L RKE I C EL QV 203
Cdd:PRK03918 198 KEK E L E EV L REINEISSELPE LRE ELEKLEKEVKEL E ELK E EIEE L EK ---- E L ESL E GSKRKLE E KIRE L EER I E EL KK 273
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 204 KKNI L a EE LSTNKNQ LK QLT E T Y EEDRKN Y S E VQIRCQRLALE L ADTKQL I QQGDY R QENYDKVKSERDA L EQEVI EL RR 283
Cdd:PRK03918 274 EIEE L - EE KVKELKE LK EKA E E Y IKLSEF Y E E YLDELREIEKR L SRLEEE I NGIEE R IKELEEKEERLEE L KKKLK EL EK 352
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 284 KH E I LE AS H MIQTKERSELS ----------- KEVVT LE QTVTL L Q K D KE YLNRQNMELSV R CAHEEDRLER L QAQL EE S K 352
Cdd:PRK03918 353 RL E E LE ER H ELYEEAKAKKE elerlkkrltg LTPEK LE KELEE L E K A KE EIEEEISKITA R IGELKKEIKE L KKAI EE L K 432
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 353 KA --------------- R E E MY E K Y ------ VASRDHYKT E Y E N KL HD EL EQIR -- LK TNQ E IDQ L RNASREMY E R E NRS 409
Cdd:PRK03918 433 KA kgkcpvcgrelteeh R K E LL E E Y taelkr IEKELKEIE E K E R KL RK EL RELE kv LK KES E LIK L KELAEQLK E L E EKL 512
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 410 GGWEVQY L RTG i WQ E ---- PSHY I IIWHKARRNLR E ARDNAVAE K ER A VMAE K -- DAL E KHDQ LL DRYR EL QLSTESKVT 483
Cdd:PRK03918 513 KKYNLEE L EKK - AE E yekl KEKL I KLKGEIKSLKK E LEKLEELK K KL A ELEK K ld ELE E ELAE LL KELE EL GFESVEELE 591
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 484 E F L hq SK L KS F ES E RVQ L LQ ----- E ETARN L TQCQL E CE K YQKK L EVLT K EFYS L qass E K RIT EL QAQN S -- E HQARL 556
Cdd:PRK03918 592 E R L -- KE L EP F YN E YLE L KD aekel E REEKE L KKLEE E LD K AFEE L AETE K RLEE L ---- R K ELE EL EKKY S ee E YEELR 665
490
....*....|
gi 1164769123 557 DI Y EK L EK EL 566
Cdd:PRK03918 666 EE Y LE L SR EL 675
CCDC158
pfam15921 Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
141-721
1.77e-03
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain]
Cd Length: 1112
Bit Score: 42.03
E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 141 TNLQL R EKAGDVRRN LR DFE l TE EQ Y I K LKA FP - EDQL SIPEYV S VRFY EL V nplrkeice LQ VKKNILAEEL S TNKNQL 219
Cdd:pfam15921 211 STMHF R SLGSAISKI LR ELD - TE IS Y L K GRI FP v EDQL EALKSE S QNKI EL L --------- LQ QHQDRIEQLI S EHEVEI 280
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 220 KQ LTE TYEED R KNYSEV Q IRCQ rlaleladtkql I Q Q GDY R QE N YDKVKSER D a LE QE V IE LR R kh E IL EA SH M IQT K e R 299
Cdd:pfam15921 281 TG LTE KASSA R SQANSI Q SQLE ------------ I I Q EQA R NQ N SMYMRQLS D - LE ST V SQ LR S -- E LR EA KR M YED K - I 344
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 300 S EL S K EV V TLEQTV T LLQKDKEYLNRQNME L SVRCAHEEDR L ERLQAQ L EES K KAREEMYEKYVASR --- DH YKT E YENK 376
Cdd:pfam15921 345 E EL E K QL V LANSEL T EARTERDQFSQESGN L DDQLQKLLAD L HKREKE L SLE K EQNKRLWDRDTGNS iti DH LRR E LDDR 424
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 377 ------ L HDE L EQIRLKTNQEIDQLRN A SREMY E RENRSGGWEV Q YLR T giw Q E PSHYIIIWHK A RRNLR E ARDNA V A -- 448
Cdd:pfam15921 425 nmevqr L EAL L KAMKSECQGQMERQMA A IQGKN E SLEKVSSLTA Q LES T --- K E MLRKVVEELT A KKMTL E SSERT V S dl 501
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 449 ----- EKERA VM A EKDALE K HDQLL D - RYR ELQ - L ST E SKVTEFLHQS ---- KL KSF E SER V QLLQEETAR N L TQ ----- 512
Cdd:pfam15921 502 taslq EKERA IE A TNAEIT K LRSRV D l KLQ ELQ h L KN E GDHLRNVQTE ceal KL QMA E KDK V IEILRQQIE N M TQ lvgqh 581
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 513 ----------- C QLE C E KYQKK LE V lt K EF YS L QASSEKR I T EL Q A QN S EHQ ----------- A RL DIYEKLEK E L D EII 570
Cdd:pfam15921 582 grtagamqvek A QLE K E INDRR LE L -- Q EF KI L KDKKDAK I R EL E A RV S DLE lekvklvnags E RL RAVKDIKQ E R D QLL 659
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 571 MQTAEIE NE ----- DEA E RVLFSYGYGANVPT T AKRR LK QSVHL A RRV L Q lek Q NSLI LK DL E HRKDQVTQLSQELDR an 645
Cdd:pfam15921 660 NEVKTSR NE lnsls EDY E VLKRNFRNKSEEME T TTNK LK MQLKS A QSE L E --- Q TRNT LK SM E GSDGHAMKVAMGMQK -- 734
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1164769123 646 sllnqtqqpyrylie SVRQRDSK ID S L TES I AQ LE KDVS N L NKEK SA L LQT KN QMALD L EQLLNHREEL A AMKQI L 721
Cdd:pfam15921 735 --------------- QITAKRGQ ID A L QSK I QF LE EAMT N A NKEK HF L KEE KN KLSQE L STVATEKNKM A GELEV L 795
Name
Accession
Description
Interval
E-value
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
208-567
1.61e-08
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 58.53
E-value: 1.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 208 LAE EL STNKNQ L K --- QLT E T Y E E DRKNYS E VQ ircqr LAL ELADTKQ L iqqgdyr Q E NYDKVKS E RDAL E Q E VI EL RRK 284
Cdd:TIGR02168 194 ILN EL ERQLKS L E rqa EKA E R Y K E LKAELR E LE ----- LAL LVLRLEE L ------- R E ELEELQE E LKEA E E E LE EL TAE 261
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 285 HEI LE ASHMIQTK E R SEL SK E VVT L EQTVTL L QKDKEY L NR Q NME L SV R C A HE E DR LE R L Q AQLEE SKKARE E MY E K yva 364
Cdd:TIGR02168 262 LQE LE EKLEELRL E V SEL EE E IEE L QKELYA L ANEISR L EQ Q KQI L RE R L A NL E RQ LE E L E AQLEE LESKLD E LA E E --- 338
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 365 srdhyktey ENK L HDE LE QIRLKTNQEIDQ L RNASR E MY E R E N R SGGW E V Q YLR tgiwqepshyiiiwhk A R RNLREAR d 444
Cdd:TIGR02168 339 --------- LAE L EEK LE ELKEELESLEAE L EELEA E LE E L E S R LEEL E E Q LET ---------------- L R SKVAQLE - 392
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 445 nava EKERAVMA E KDA LE KHDQL L DRY RE LQLSTESK vtefl HQS KL KSF E SERV Q LLQ EE TARN L TQC Q L E C E KYQKK L 524
Cdd:TIGR02168 393 ---- LQIASLNN E IER LE ARLER L EDR RE RLQQEIEE ----- LLK KL EEA E LKEL Q AEL EE LEEE L EEL Q E E L E RLEEA L 463
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1164769123 525 E V L TK E F yslq ASS E KRITELQAQNSEH QARLD IY E K L EKE L D 567
Cdd:TIGR02168 464 E E L RE E L ---- EEA E QALDAAERELAQL QARLD SL E R L QEN L E 502
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
125-404
6.22e-08
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 56.60
E-value: 6.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 125 KQ E M E TILLRQKQ LEE TNLQ L REKAGDV R RN L RDF E LTE EQ YI K LKAFPED Q L S IPEYVSV R FYEL V NP L RKE I CE L QVK 204
Cdd:TIGR02168 676 RR E I E ELEEKIEE LEE KIAE L EKALAEL R KE L EEL E EEL EQ LR K ELEELSR Q I S ALRKDLA R LEAE V EQ L EER I AQ L SKE 755
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 205 KNI L AE E LSTNKNQ L KQLT E TYE E DRKNYS E VQIRCQR L AL EL ADTKQLIQ -- QGDYRQE N -- YDKVKSERDA LE QEVIE 280
Cdd:TIGR02168 756 LTE L EA E IEELEER L EEAE E ELA E AEAEIE E LEAQIEQ L KE EL KALREALD el RAELTLL N ee AANLRERLES LE RRIAA 835
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 281 LR R KH E I LE ASHMIQTKERSE L SK E VVT LE QTVTL L QKDK E Y L NRQNME L SVRC A HEEDR LE R L QAQ L E E SKKA R E E MYE 360
Cdd:TIGR02168 836 TE R RL E D LE EQIEELSEDIES L AA E IEE LE ELIEE L ESEL E A L LNERAS L EEAL A LLRSE LE E L SEE L R E LESK R S E LRR 915
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1164769123 361 KYVAS R DH yktey ENK L HDE LE QIRLKTNQEIDQ L RNASREMY E 404
Cdd:TIGR02168 916 ELEEL R EK ----- LAQ L ELR LE GLEVRIDNLQER L SEEYSLTL E 954
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
206-569
3.06e-07
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 54.17
E-value: 3.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 206 NILAE EL STNKNQ L K --- QLT E T Y E E DRKNYS E VQIRCQR L A L ELADTKQ -- L IQQGDYRQENYDKVKS E RDA LE Q E VI E 280
Cdd:COG1196 192 EDILG EL ERQLEP L E rqa EKA E R Y R E LKEELK E LEAELLL L K L RELEAEL ee L EAELEELEAELEELEA E LAE LE A E LE E 271
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 281 LR RKH E I LE ASHMIQTK E RS EL SK E VVT LEQ TVTL L QKDKEY L NRQNM EL SVRC A HE E DR LE R L QAQ LEE SKKAR EE mye 360
Cdd:COG1196 272 LR LEL E E LE LELEEAQA E EY EL LA E LAR LEQ DIAR L EERRRE L EERLE EL EEEL A EL E EE LE E L EEE LEE LEEEL EE --- 348
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 361 kyvasrdhykteyenk LHD ELE QIRLKTNQEIDQ L RN A SR E MY E R E NR sggwevqylrtgiwqepshyiiiwhkarrnl R 440
Cdd:COG1196 349 ---------------- AEE ELE EAEAELAEAEEA L LE A EA E LA E A E EE ------------------------------- L 381
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 441 E ARDNAVA E KE RA VMAEKDA LE KHDQLLDRYR E LQLST E SKVT E FLHQSKLKSF E S E RVQLLQ EE T A RNLTQCQL E C E KY 520
Cdd:COG1196 382 E ELAEELL E AL RA AAELAAQ LE ELEEAEEALL E RLERL E EELE E LEEALAELEE E E E EEEEAL EE A A EEEAELEE E E E AL 461
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1164769123 521 QKK L EV L TK E FYS L Q A SSEKRIT EL QAQNSEHQAR L DIYEKL E KE L DEI 569
Cdd:COG1196 462 LEL L AE L LE E AAL L E A ALAELLE EL AEAAARLLLL L EAEADY E GF L EGV 510
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
17-717
7.85e-07
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 52.75
E-value: 7.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 17 SL E S E DIS L ETTVPTDDISSS E E R EGKVRITRQLI E RKEL L HNIQLLKIE L S Q KTMMIDNLKVDYLTKI EELE EK L NDAL 96
Cdd:TIGR02168 250 EA E E E LEE L TAELQELEEKLE E L R LEVSELEEEIE E LQKE L YALANEISR L E Q QKQILRERLANLERQL EELE AQ L EELE 329
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 97 HQKQL L TLR L d NQ L AFQQKDASKYQ E LMKQ E M E TILLRQKQ LE ETNLQ L R E KAGDV R RNLRDF EL TEE ---- QYIK L K A F 172
Cdd:TIGR02168 330 SKLDE L AEE L - AE L EEKLEELKEEL E SLEA E L E ELEAELEE LE SRLEE L E E QLETL R SKVAQL EL QIA slnn EIER L E A R 408
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 173 P E D - QLSIPEYVSVRFYE L VNPLRK E IC ELQ VKKNI L A EEL STNKNQ L KQ L T E TY EE D R KNYS E VQIRCQRLAL ELA DTK 251
Cdd:TIGR02168 409 L E R l EDRRERLQQEIEEL L KKLEEA E LK ELQ AELEE L E EEL EELQEE L ER L E E AL EE L R EELE E AEQALDAAER ELA QLQ 488
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 252 QLIQQGDYR QEN YDKVKSERD AL EQEVIE L RRKHEI L ea S HM I QTK E RS E LSK E VVTLEQTVTLLQKDKE ------- Y L N 324
Cdd:TIGR02168 489 ARLDSLERL QEN LEGFSEGVK AL LKNQSG L SGILGV L -- S EL I SVD E GY E AAI E AALGGRLQAVVVENLN aakkaia F L K 566
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 325 RQNMELSVRCAHEEDRLERL Q AQLE E SK K a RE E MYEKYVASRDHYKTEYENK L HDE L EQIRLKTN qe I D QLRNASREMYE 404
Cdd:TIGR02168 567 QNELGRVTFLPLDSIKGTEI Q GNDR E IL K - NI E GFLGVAKDLVKFDPKLRKA L SYL L GGVLVVDD -- L D NALELAKKLRP 643
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 405 REN --------- R S GG wevqy LR TG IWQEPSHY I IIWHKARRN L R E ARDNAVAEKERAVM A EKDALEKHDQ L LDRYRE L Q 475
Cdd:TIGR02168 644 GYR ivtldgdlv R P GG ----- VI TG GSAKTNSS I LERRREIEE L E E KIEELEEKIAELEK A LAELRKELEE L EEELEQ L R 718
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 476 LST E SKVTEFLHQS K LKSFESER V QL L Q E ET A RNLTQCQLECEKYQKKL E V L TKEFYS L QASSEK r I T EL Q AQ nsehqar 555
Cdd:TIGR02168 719 KEL E ELSRQISALR K DLARLEAE V EQ L E E RI A QLSKELTELEAEIEELE E R L EEAEEE L AEAEAE - I E EL E AQ ------- 790
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 556 ldi Y E K L EK EL DEIIMQTA E IEN E DEAERVLF sygyg AN VPTTAKRRLKQSVHLA RR VLQ LE K Q NSLILK D L E HRKDQVT 635
Cdd:TIGR02168 791 --- I E Q L KE EL KALREALD E LRA E LTLLNEEA ----- AN LRERLESLERRIAATE RR LED LE E Q IEELSE D I E SLAAEIE 862
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 636 Q L SQELDRAN S L L NQTQQPYRY L I E SVRQRD S KIDS L T E SIAQ LE KDV S N L NK E KSA L LQTKN Q MA L D LE Q L LNHREE L A 715
Cdd:TIGR02168 863 E L EELIEELE S E L EALLNERAS L E E ALALLR S ELEE L S E ELRE LE SKR S E L RR E LEE L REKLA Q LE L R LE G L EVRIDN L Q 942
..
gi 1164769123 716 AM 717
Cdd:TIGR02168 943 ER 944
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
87-696
1.03e-06
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 52.63
E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 87 EL E E K L NDALHQKQ LL T LR - L DNQ L AFQQKDASKYQELMKQEMETILLRQKQ LEE TN L Q L R E KAGDVRRNLRDFELTEEQ 165
Cdd:COG1196 217 EL K E E L KELEAELL LL K LR e L EAE L EELEAELEELEAELEELEAELAELEAE LEE LR L E L E E LELELEEAQAEEYELLAE 296
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 166 YIK L K afpedqlsipeyvsvrfy ELVNP L RKEIC EL QVKKNI L A EEL STNKNQ L KQ L T E TY EE DRKNYS E VQIRCQRLAL 245
Cdd:COG1196 297 LAR L E ------------------ QDIAR L EERRR EL EERLEE L E EEL AELEEE L EE L E E EL EE LEEELE E AEEELEEAEA 358
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 246 ELA DTKQ ---- LIQQGDYRQ E NYDKVKS E RDALEQEVI EL RRKH E I LE ASHMIQTKERSE L SK E VVT LE QTVTL L QKDK E 321
Cdd:COG1196 359 ELA EAEE alle AEAELAEAE E ELEELAE E LLEALRAAA EL AAQL E E LE EAEEALLERLER L EE E LEE LE EALAE L EEEE E 438
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 322 YLNRQNM E L svrc A H EE DR LE RLQAQ L E E SKKARE E MYEKYV A SRDHYKT E YENKLHDE L EQIRLKTNQ E id QLRNASRE 401
Cdd:COG1196 439 EEEEALE E A ---- A E EE AE LE EEEEA L L E LLAELL E EAALLE A ALAELLE E LAEAAARL L LLLEAEADY E -- GFLEGVKA 512
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 402 MYERENRS G GWEVQYLRT G IWQEPSHYIIIWHK A RRNLREAR D NA VA EKERAVMAEKD A LEKHDQL LD RY R ELQLSTESK 481
Cdd:COG1196 513 ALLLAGLR G LAGAVAVLI G VEAAYEAALEAALA A ALQNIVVE D DE VA AAAIEYLKAAK A GRATFLP LD KI R ARAALAAAL 592
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 482 VTEF ------ L HQ S K L KSFESERVQ L LQEETA R N L TQCQ LE CEKYQKK ------ L EV LTKEFYSLQAS S EKRITELQAQN 549
Cdd:COG1196 593 ARGA igaavd L VA S D L READARYYV L GDTLLG R T L VAAR LE AALRRAV tlagrl R EV TLEGEGGSAGG S LTGGSRRELLA 672
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 550 SEHQ A RLDIY E KL E KELD E IIMQTAEIEN E D E A ER vlfsygyganvpt TAKRRLKQSVHLARRVLQ LE K Q NSLILKD L EH 629
Cdd:COG1196 673 ALLE A EAELE E LA E RLAE E ELELEEALLA E E E E ER ------------- ELAEAEEERLEEELEEEA LE E Q LEAEREE L LE 739
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 630 RKDQVTQ L SQ E LDRANSLLNQTQQPYRYLI E SVRQR ------------------------- DSKIDS L T E SIAQ LE KDVS 684
Cdd:COG1196 740 ELLEEEE L LE E EALEELPEPPDLEELEREL E RLERE iealgpvnllaieeyeeleerydfl SEQRED L E E ARET LE EAIE 819
650
....*....|..
gi 1164769123 685 NLNK E KSALLQT 696
Cdd:COG1196 820 EIDR E TRERFLE 831
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
32-355
2.62e-06
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 51.22
E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 32 D D I SSSE E REG K VRITRQLI E RK E L lh NI QL L KIELSQ K TMMIDN L KVDYLTKIE -- E L EEKLNDA --- LHQ K QLLT L R - 105
Cdd:TIGR02169 160 D E I AGVA E FDR K KEKALEEL E EV E E -- NI ER L DLIIDE K RQQLER L RREREKAER yq A L LKEKREY egy ELL K EKEA L E r 237
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 106 ---- LDN QLA FQQKDAS K YQ E LMKQEMETILLRQKQ LEE T N LQLREKAGD ---- V RRNLRDF E LTEEQYIKLK A FP E DQ L 177
Cdd:TIGR02169 238 qkea IER QLA SLEEELE K LT E EISELEKRLEEIEQL LEE L N KKIKDLGEE eqlr V KEKIGEL E AEIASLERSI A EK E RE L 317
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 178 SIP E YVSVRFYELVNP L RK EI C E lqvkkni L AE E LSTNKNQLKQ LTE T Y E E DRKNYSEVQIRCQRLAL E L A D T KQLIQQ g 257
Cdd:TIGR02169 318 EDA E ERLAKLEAEIDK L LA EI E E ------- L ER E IEEERKRRDK LTE E Y A E LKEELEDLRAELEEVDK E F A E T RDELKD - 389
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 258 dy RQ E NYD K V K S E RDA L -------------- EQ E VIE L RRKHEIL EA SHMIQTK E RSELSK E VVTL E QTVTL L QK D KEYL 323
Cdd:TIGR02169 390 -- YR E KLE K L K R E INE L kreldrlqeelqrl SE E LAD L NAAIAGI EA KINELEE E KEDKAL E IKKQ E WKLEQ L AA D LSKY 467
330 340 350
....*....|....*....|....*....|..
gi 1164769123 324 NRQNME L SVRCAHE E DR L ER LQ AQ L E E SKKAR 355
Cdd:TIGR02169 468 EQELYD L KEEYDRV E KE L SK LQ RE L A E AEAQA 499
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
90-716
3.63e-06
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 50.83
E-value: 3.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 90 EK L N D A L HQ -- K QL LT L RL dnqlaf Q QKD A SK Y Q EL m K Q E METIL L R --------- QKQ LEE TNLQ L R E KAGDVRRNLRD 158
Cdd:TIGR02168 189 DR L E D I L NE le R QL KS L ER ------ Q AEK A ER Y K EL - K A E LRELE L A llvlrleel REE LEE LQEE L K E AEEELEELTAE 261
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 159 FELT EE QYIK L K - AFP E DQLS I P E YVS v RF Y E L V N plrk EI CE L QVK K N IL A E E L STNKN QL KQ L TETY EE DRKNYS E VQ 237
Cdd:TIGR02168 262 LQEL EE KLEE L R l EVS E LEEE I E E LQK - EL Y A L A N ---- EI SR L EQQ K Q IL R E R L ANLER QL EE L EAQL EE LESKLD E LA 336
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 238 IRCQR L ALE L ADT K QLIQQ gdy RQENYDKVKS E RDA LE QEVI EL RRKH E I L EASHMIQTKERSE L SK E VVT LE QTVTL L Q 317
Cdd:TIGR02168 337 EELAE L EEK L EEL K EELES --- LEAELEELEA E LEE LE SRLE EL EEQL E T L RSKVAQLELQIAS L NN E IER LE ARLER L E 413
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 318 KDK E Y L NRQNM EL sv RCAH EE DR L ER LQA Q LEE SKKAR EE MY E KYVASRDHYKTEY E NK lh D E L EQ IRLKTNQ E ID QL RN 397
Cdd:TIGR02168 414 DRR E R L QQEIE EL -- LKKL EE AE L KE LQA E LEE LEEEL EE LQ E ELERLEEALEELR E EL -- E E A EQ ALDAAER E LA QL QA 489
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 398 ASREMYERENRSG G -------- WEV Q YLRT GI WQEP S HY I II --- WHK A RRN - L REARDNA V A E KER A VMAEKDA L EKHD 465
Cdd:TIGR02168 490 RLDSLERLQENLE G fsegvkal LKN Q SGLS GI LGVL S EL I SV deg YEA A IEA a L GGRLQAV V V E NLN A AKKAIAF L KQNE 569
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 466 QLLDRYRE L QLSTESKV t EFLHQSK LK SF E SERVQLLQEET ------------------ ARN L TQCQLECE K YQKKLEVL 527
Cdd:TIGR02168 570 LGRVTFLP L DSIKGTEI - QGNDREI LK NI E GFLGVAKDLVK fdpklrkalsyllggvlv VDD L DNALELAK K LRPGYRIV 648
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 528 T KEFYSLQAS ------ S E K RITELQAQNS E hqarldi Y E K LE KELD E IIMQT AE I E NE - D E AERV L FSYGYGANVPTTAK 600
Cdd:TIGR02168 649 T LDGDLVRPG gvitgg S A K TNSSILERRR E ------- I E E LE EKIE E LEEKI AE L E KA l A E LRKE L EELEEELEQLRKEL 721
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 601 RR L KQSVHLA R -------- R V L QLE KQNSLIL K D L EHRKDQVTQ L SQE L DR A NSL L NQTQQPYRY L IESVR Q RDSKIDS L 672
Cdd:TIGR02168 722 EE L SRQISAL R kdlarlea E V E QLE ERIAQLS K E L TELEAEIEE L EER L EE A EEE L AEAEAEIEE L EAQIE Q LKEELKA L 801
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 1164769123 673 T E SIAQ L EKDVSN LN K E KSA L LQTKNQMALDLEQLLNHR E E L AA 716
Cdd:TIGR02168 802 R E ALDE L RAELTL LN E E AAN L RERLESLERRIAATERRL E D L EE 845
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
433-723
4.80e-06
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 50.32
E-value: 4.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 433 HK A R R N L REARD N ---------------------- AV AE KE R AVMA E KDA LE k HDQ LL DRY REL Q lste SKVT E FLHQSK 490
Cdd:COG1196 175 EE A E R K L EATEE N lerledilgelerqleplerqa EK AE RY R ELKE E LKE LE - AEL LL LKL REL E ---- AELE E LEAELE 249
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 491 LKSF E S E RVQLLQE E TARN L TQCQ LE C E KYQKK LE VLTK E F Y S L Q A SSEKRITELQAQNSEHQARLDIY E K LE K EL D E II 570
Cdd:COG1196 250 ELEA E L E ELEAELA E LEAE L EELR LE L E ELELE LE EAQA E E Y E L L A ELARLEQDIARLEERRRELEERL E E LE E EL A E LE 329
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 571 MQTA E I E N E D E AER vlfsygyg ANVPTTAKRRLKQSVH LA RRVLQ L EKQNSLILKDL E HRKDQVTQ L SQE L DR A NS L LN Q 650
Cdd:COG1196 330 EELE E L E E E L E ELE -------- EELEEAEEELEEAEAE LA EAEEA L LEAEAELAEAE E ELEELAEE L LEA L RA A AE L AA Q 401
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1164769123 651 TQQ pyry L I E SVRQRDSKIDS L T E SIAQ LE KDVSN L NK E KSALLQTKNQM A LDLEQ L LNHR E E L AAMKQI L VK 723
Cdd:COG1196 402 LEE ---- L E E AEEALLERLER L E E ELEE LE EALAE L EE E EEEEEEALEEA A EEEAE L EEEE E A L LELLAE L LE 470
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
36-409
1.23e-05
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 48.91
E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 36 S SEE R E G KVRITRQLI E RKE L LHNIQL LK I ELS --- QKTMM I D N LKVDYLTKIEELEE K LNDALHQKQL L TLRLDNQLAF 112
Cdd:TIGR02169 659 S RAP R G G ILFSRSEPA E LQR L RERLEG LK R ELS slq SELRR I E N RLDELSQELSDASR K IGEIEKEIEQ L EQEEEKLKER 738
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 113 QQKDASKYQE L ------ M K Q E METILL R QKQ LEE TNLQ L R E KAG D VRRN L RDFELT E E Q yiklkafpe DQ LS IP E YVSV R 186
Cdd:TIGR02169 739 LEELEEDLSS L eqeien V K S E LKELEA R IEE LEE DLHK L E E ALN D LEAR L SHSRIP E I Q --------- AE LS KL E EEVS R 809
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 187 FYELVNPLRKEICE L QVK K NI L AE E LSTNKN Q LKQ L T E TYEEDR K NYSEVQIRCQR L AL EL ADTKQLIQQGD yrq ENYDK 266
Cdd:TIGR02169 810 IEARLREIEQKLNR L TLE K EY L EK E IQELQE Q RID L K E QIKSIE K EIENLNGKKEE L EE EL EELEAALRDLE --- SRLGD 886
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 267 V K S ERD A LE QEVI EL R RK H E I LEA SHMIQT K ER SEL SKEVVT LE QTVTLLQKD K EYLNRQNM E LSV -- RCAH E ED R L E RL 344
Cdd:TIGR02169 887 L K K ERD E LE AQLR EL E RK I E E LEA QIEKKR K RL SEL KAKLEA LE EELSEIEDP K GEDEEIPE E ELS le DVQA E LQ R V E EE 966
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1164769123 345 QAQ LE ESKKAREEM YE KYVASR D HY K t E YEN KL HD E LEQ I RLKTNQEIDQL R NASR E MY E RE N RS 409
Cdd:TIGR02169 967 IRA LE PVNMLAIQE YE EVLKRL D EL K - E KRA KL EE E RKA I LERIEEYEKKK R EVFM E AF E AI N EN 1030
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
37-356
1.51e-05
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 48.90
E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 37 SEER E GKVRITRQLI E RK EL LHNIQL L KI EL SQKTMM I DN L KV D y L TKI E ELE E K L NDALH Q KQLLTLR L DNQLAFQQKD 116
Cdd:TIGR02168 691 EKIA E LEKALAELRK E LE EL EEELEQ L RK EL EELSRQ I SA L RK D - L ARL E AEV E Q L EERIA Q LSKELTE L EAEIEELEER 769
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 117 ASKYQ E LMKQEMET I LLRQK Q L E ETNLQ ---------- LR EKAGDVRRNLRDFELTE E QYIKLK A FP E DQ L SIP E YVSVR 186
Cdd:TIGR02168 770 LEEAE E ELAEAEAE I EELEA Q I E QLKEE lkalrealde LR AELTLLNEEAANLRERL E SLERRI A AT E RR L EDL E EQIEE 849
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 187 FY E LVNP L RK EI C EL QVKKNI L AE EL STNK N QLKQ L T E TYEED R KNYS E VQIRCQR L ALELADTKQLIQQGDYRQENYDK 266
Cdd:TIGR02168 850 LS E DIES L AA EI E EL EELIEE L ES EL EALL N ERAS L E E ALALL R SELE E LSEELRE L ESKRSELRRELEELREKLAQLEL 929
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 267 VKSERDALEQEVI E LRRKHEI L EASHMIQTKERS E LSK E V vt LEQTVTL L QKDKEY L NRQ N MELSVRCAHEED R LER L Q A 346
Cdd:TIGR02168 930 RLEGLEVRIDNLQ E RLSEEYS L TLEEAEALENKI E DDE E E -- ARRRLKR L ENKIKE L GPV N LAAIEEYEELKE R YDF L T A 1007
330
....*....|
gi 1164769123 347 Q L E ESKK A R E 356
Cdd:TIGR02168 1008 Q K E DLTE A K E 1017
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
125-357
3.84e-05
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 46.68
E-value: 3.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 125 KQ E M E TI llr Q KQLE E TNLQ L REKAGDVRRN L RDFELT E EQYIK L kafp EDQLSIP E yvsvrfy ELVNP L RK E IC EL QVK 204
Cdd:COG4942 26 EA E L E QL --- Q QEIA E LEKE L AALKKEEKAL L KQLAAL E RRIAA L ---- ARRIRAL E ------- QELAA L EA E LA EL EKE 91
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 205 KNI L AE EL STN K NQ L - KQ L TET Y EED R KNYSEVQIRCQRLALELADTKQ L IQQGDY R Q E NYDKVKSERDA L EQEVI EL RR 283
Cdd:COG4942 92 IAE L RA EL EAQ K EE L a EL L RAL Y RLG R QPPLALLLSPEDFLDAVRRLQY L KYLAPA R R E QAEELRADLAE L AALRA EL EA 171
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1164769123 284 KHEI LEA SHMIQTK ER SE L SKEVVTLEQTVTL L Q K DKEY L NRQNM EL svrc AH E EDR LE R L Q A Q LE ESKK A RE E 357
Cdd:COG4942 172 ERAE LEA LLAELEE ER AA L EALKAERQKLLAR L E K ELAE L AAELA EL ---- QQ E AEE LE A L I A R LE AEAA A AA E 241
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
433-763
6.93e-05
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 46.59
E-value: 6.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 433 HKAR R N L REA R D N ------ AVA E K ER AV --- MAEKDAL E KHDQ L LDRY REL Q L STESKVT E F L HQSKLKSF E S - ERVQLL 502
Cdd:TIGR02168 175 KETE R K L ERT R E N ldrled ILN E L ER QL ksl ERQAEKA E RYKE L KAEL REL E L ALLVLRL E E L REELEELQ E E l KEAEEE 254
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 503 Q EE TARN L TQCQLEC E ------- KYQKKL E V L T KE F Y S L QA ssek R I TE L QA Q NSEHQA RL DIY E KLEK EL DEIIMQTAE 575
Cdd:TIGR02168 255 L EE LTAE L QELEEKL E elrlevs ELEEEI E E L Q KE L Y A L AN ---- E I SR L EQ Q KQILRE RL ANL E RQLE EL EAQLEELES 330
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 576 IEN E DEA E rvlfsygyganvptt AKRRLKQSVH L ARRVLQ LE KQNSLILKD LE HRKDQVTQ L SQE L DRAN S LLN Q TQQPY 655
Cdd:TIGR02168 331 KLD E LAE E --------------- LAELEEKLEE L KEELES LE AELEELEAE LE ELESRLEE L EEQ L ETLR S KVA Q LELQI 395
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 656 RY L IESVRQRDSKIDS L TESIAQ L EKDVSN L N K EKSALLQTKN Q MA L DL -- E Q L LNHR EEL AAMKQI L VKMHSKHS E NSL 733
Cdd:TIGR02168 396 AS L NNEIERLEARLER L EDRRER L QQEIEE L L K KLEEAELKEL Q AE L EE le E E L EELQ EEL ERLEEA L EELREELE E AEQ 475
330 340 350
....*....|....*....|....*....|
gi 1164769123 734 L L TKT E PKHVTENQKSKT L NVPK E HEDNIF 763
Cdd:TIGR02168 476 A L DAA E RELAQLQARLDS L ERLQ E NLEGFS 505
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
242-584
8.79e-05
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 46.20
E-value: 8.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 242 R L ALELADTKQL I QQG dyr QENYDKVKS E RDA LE Q E VIE LR RKH E I L EASHMIQT K ERSE L SK EV VT LE QTVTL L Q K DKE 321
Cdd:TIGR02168 681 E L EEKIEELEEK I AEL --- EKALAELRK E LEE LE E E LEQ LR KEL E E L SRQISALR K DLAR L EA EV EQ LE ERIAQ L S K ELT 757
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 322 Y L NRQNM EL SV R CAHE E DR L ERLQ A QL EE SKKAR E EMY E KYV A S R dhykteyen KLH DEL EQIRLKT N Q E IDQ LR NA s R E 401
Cdd:TIGR02168 758 E L EAEIE EL EE R LEEA E EE L AEAE A EI EE LEAQI E QLK E ELK A L R --------- EAL DEL RAELTLL N E E AAN LR ER - L E 827
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 402 MY ER ENRSGGWEVQY L rtgiwqepshyiiiw HKARRN L R E ARDNAV AE K E RAVMAEKDALEKHDQ LL DRYRE L QLSTESK 481
Cdd:TIGR02168 828 SL ER RIAATERRLED L --------------- EEQIEE L S E DIESLA AE I E ELEELIEELESELEA LL NERAS L EEALALL 892
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 482 VT E F - LHQSK L KSF ES E R VQ L LQ E etarn L TQCQLECEKYQKK LE V L TKEFYS LQ AS - SE KRITE L QAQNSEHQARL D IY 559
Cdd:TIGR02168 893 RS E L e ELSEE L REL ES K R SE L RR E ----- L EELREKLAQLELR LE G L EVRIDN LQ ER l SE EYSLT L EEAEALENKIE D DE 967
330 340 350
....*....|....*....|....*....|....
gi 1164769123 560 E KLEKE L DEIIMQTA E I --------- E N E DEA ER 584
Cdd:TIGR02168 968 E EARRR L KRLENKIK E L gpvnlaaie E Y E ELK ER 1001
SMC_prok_A
TIGR02169 chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
183-579
1.01e-04
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain]
Cd Length: 1164
Bit Score: 46.21
E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 183 V S VRFYELVNP LR KEICE L QVKKNI L AE EL STNK N Q L KQ L TETYEEDRKNYS E VQIRCQR L AL E LADT K QLIQQ gdyrqe 262
Cdd:TIGR02169 668 F S RSEPAELQR LR ERLEG L KRELSS L QS EL RRIE N R L DE L SQELSDASRKIG E IEKEIEQ L EQ E EEKL K ERLEE ------ 741
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 263 nydk VKSERDA LEQE VIELRRKHEI LEA SHMIQTKERSE L SKEVVT LE QT ----- VTLL Q KDKEY L NRQNMELSV R CAHE 337
Cdd:TIGR02169 742 ---- LEEDLSS LEQE IENVKSELKE LEA RIEELEEDLHK L EEALND LE AR lshsr IPEI Q AELSK L EEEVSRIEA R LREI 817
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 338 E DR L E RL QAQL E ESK K ARE E M y EKYVASRDHYKTEY E NKLHDELEQIR l KTNQ E IDQ L RN A S R EMYE R enrsggwevqyl 417
Cdd:TIGR02169 818 E QK L N RL TLEK E YLE K EIQ E L - QEQRIDLKEQIKSI E KEIENLNGKKE - ELEE E LEE L EA A L R DLES R ------------ 883
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 418 rtgiwqepshyiiiwhka RRN L REA RD NAV A EKERAVMAEKDALEKHDQLLD R YR EL QLST E SK vteflh QSK L KSF E SE 497
Cdd:TIGR02169 884 ------------------ LGD L KKE RD ELE A QLRELERKIEELEAQIEKKRK R LS EL KAKL E AL ------ EEE L SEI E DP 939
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 498 RVQLLQE etarnl TQCQ L EC E KY Q KK L EVLTK E FYS L QASSEKR I T E LQ aqns E HQA RLD IYE ---- KLE K E LDE I IMQT 573
Cdd:TIGR02169 940 KGEDEEI ------ PEEE L SL E DV Q AE L QRVEE E IRA L EPVNMLA I Q E YE ---- E VLK RLD ELK ekra KLE E E RKA I LERI 1009
....*.
gi 1164769123 574 A E I E NE 579
Cdd:TIGR02169 1010 E E Y E KK 1015
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
218-696
1.05e-04
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 46.06
E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 218 QLKQ L T E T Y EED R KNYS E VQIRCQR L A L EL A DTKQLIQQGDYR -- QENYDKVKS E RDA LE QEVIE LR RKHEI LEA SHM - I 294
Cdd:COG4913 256 PIRE L A E R Y AAA R ERLA E LEYLRAA L R L WF A QRRLELLEAELE el RAELARLEA E LER LE ARLDA LR EELDE LEA QIR g N 335
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 295 QTKERSE L SK E VVT LE QTVTLLQKDKEY L NRQNME L SVRCAHEEDRLER L Q A QL -------- EE SKKAR E EMY E KYV A S R 366
Cdd:COG4913 336 GGDRLEQ L ER E IER LE RELEERERRRAR L EALLAA L GLPLPASAEEFAA L R A EA aalleale EE LEALE E ALA E AEA A L R 415
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 367 D H y KT E YE n K L HD E LEQIRLKTN --- QEIDQ LR N A SR ----------------- E MYER E N R sgg W E --- VQY L --- RTG 420
Cdd:COG4913 416 D L - RR E LR - E L EA E IASLERRKS nip ARLLA LR D A LA ealgldeaelpfvgeli E VRPE E E R --- W R gai ERV L ggf ALT 490
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 421 IWQE P S HY ----- IIIWHKA R RN L REA R DNAVAEKERAVMAEK D A L ekhdqlldr YRE L QLS t ESKVTEF L HQSKLKS F E 495
Cdd:COG4913 491 LLVP P E HY aaalr WVNRLHL R GR L VYE R VRTGLPDPERPRLDP D S L --------- AGK L DFK - PHPFRAW L EAELGRR F D 560
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 496 SER V QLLQ E -- ETA R NL T - QC Q L -- ECEKYQ K KLEVLTKEF Y S L QASSEKRITE L Q A QNS E HQAR L D iye KL E KE L DEII 570
Cdd:COG4913 561 YVC V DSPE E lr RHP R AI T r AG Q V kg NGTRHE K DDRRRIRSR Y V L GFDNRAKLAA L E A ELA E LEEE L A --- EA E ER L EALE 637
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 571 MQTAEIENED EA ERV L FS Y GY ganvptt AKRRLKQ svh LA R RVLQ LE KQ nsli L KD L EHRK D QVTQ L SQE L DRANSL L NQ 650
Cdd:COG4913 638 AELDALQERR EA LQR L AE Y SW ------- DEIDVAS --- AE R EIAE LE AE ---- L ER L DASS D DLAA L EEQ L EELEAE L EE 703
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 1164769123 651 TQQPYRY L IESVRQRDSKIDSLT E SIAQ L EKDVSNLNKEKSAL L QT 696
Cdd:COG4913 704 LEEELDE L KGEIGRLEKELEQAE E ELDE L QDRLEAAEDLARLE L RA 749
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
194-379
1.30e-04
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 45.68
E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 194 L RK E IC EL QVKKNILA E E L STNKNQ L KQ L T E TY E -- EDRKN YS EVQ I RCQRLAL E L A DTKQLIQQ ----- G D YR -- Q E NY 264
Cdd:COG4913 615 L EA E LA EL EEELAEAE E R L EALEAE L DA L Q E RR E al QRLAE YS WDE I DVASAER E I A ELEAELER ldass D D LA al E E QL 694
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 265 DKVKS E RDA LE Q E VI EL RRKHEI LE ASHMIQTK E RS EL SKEVVTL E QTVT L LQ kd KEY L NRQNMELSVR c A H E EDRL E R L 344
Cdd:COG4913 695 EELEA E LEE LE E E LD EL KGEIGR LE KELEQAEE E LD EL QDRLEAA E DLAR L EL -- RAL L EERFAAALGD - A V E RELR E N L 771
170 180 190
....*....|....*....|....*....|....*
gi 1164769123 345 QAQLEESKKAREEMY E KYVASRDHYKT E YENKLH D 379
Cdd:COG4913 772 EERIDALRARLNRAE E ELERAMRAFNR E WPAETA D 806
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
87-717
1.63e-04
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 45.43
E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 87 EL EEK L NDA lh QKQ LL T LRL D --- NQ L AFQ Q KDASKYQ E LMKQEMETILLRQKQ LEE TN L QLR E KA ---------- GDVR 153
Cdd:TIGR02168 217 EL KAE L REL -- ELA LL V LRL E elr EE L EEL Q EELKEAE E ELEELTAELQELEEK LEE LR L EVS E LE eeieelqkel YALA 294
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 154 RNLRDF E LTEEQYIKLK A FP E D QL SIP E YVSVRFY ------- E LVNP L RKEIC EL QVKKNI L AE EL STNKNQ L KQ L TETY 226
Cdd:TIGR02168 295 NEISRL E QQKQILRERL A NL E R QL EEL E AQLEELE skldela E ELAE L EEKLE EL KEELES L EA EL EELEAE L EE L ESRL 374
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 227 EE D ------- R KNYSEVQIRCQR L AL E LADTKQLIQQGDY R Q E NYDKVKS E -- RDAL E Q E VI EL RRKH E I LE ASHMIQTK 297
Cdd:TIGR02168 375 EE L eeqletl R SKVAQLELQIAS L NN E IERLEARLERLED R R E RLQQEIE E ll KKLE E A E LK EL QAEL E E LE EELEELQE 454
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 298 E RSE L SKEVVT L EQTVTLLQKDKEYLN R QNME L SV R CAHE E DRL E R L Q aql EE S KKAREEMYEKYVA S RDH --------- 368
Cdd:TIGR02168 455 E LER L EEALEE L REELEEAEQALDAAE R ELAQ L QA R LDSL E RLQ E N L E --- GF S EGVKALLKNQSGL S GIL gvlselisv 531
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 369 --- Y KTEY E NK L HDE L EQIRLKTNQEIDQLRNA sremy ERE N RS G GWEVQY L RTGIWQ E PSHYIIIWH K ARRNLREARDN 445
Cdd:TIGR02168 532 deg Y EAAI E AA L GGR L QAVVVENLNAAKKAIAF ----- LKQ N EL G RVTFLP L DSIKGT E IQGNDREIL K NIEGFLGVAKD 606
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 446 A V AEKERAVM A EKDA L ------ EKH D QL L DRYRE L QLS t ESK VT --- EFLHQSKLKSFE S ERVQLLQE E TA R NLTQCQLE 516
Cdd:TIGR02168 607 L V KFDPKLRK A LSYL L ggvlvv DDL D NA L ELAKK L RPG - YRI VT ldg DLVRPGGVITGG S AKTNSSIL E RR R EIEELEEK 685
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 517 C E KYQ ------- K K L EV L T KE FYS L QASS E KRIT EL QAQNSEHQ A RLDIYEK LE K E ---- LDE I IMQTA E IENEDEAERV 585
Cdd:TIGR02168 686 I E ELE ekiaele K A L AE L R KE LEE L EEEL E QLRK EL EELSRQIS A LRKDLAR LE A E veql EER I AQLSK E LTELEAEIEE 765
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 586 L FSYGYG A N vp TTAKRRLKQSVH L ARRVL QL EKQNSLILKD L EHRKDQV T Q L SQ E LDRANSL L NQTQQPYRYLIESVRQR 665
Cdd:TIGR02168 766 L EERLEE A E -- EELAEAEAEIEE L EAQIE QL KEELKALREA L DELRAEL T L L NE E AANLRER L ESLERRIAATERRLEDL 843
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 1164769123 666 DSK I DS L T E S I AQ L EKDVSN L ---- NKEK S A L LQTK N QM A LDL E Q L LNH R E EL AAM 717
Cdd:TIGR02168 844 EEQ I EE L S E D I ES L AAEIEE L eeli EELE S E L EALL N ER A SLE E A L ALL R S EL EEL 899
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
113-716
2.00e-04
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 44.93
E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 113 Q QKD A SK Y Q EL MKQEM E T - IL L RQKQ L E E TNLQ L R E KAGDVRRNLRDF E LT E EQYIK L K A fpedqlsipeyvsvrfye LV 191
Cdd:COG1196 208 Q AEK A ER Y R EL KEELK E L e AE L LLLK L R E LEAE L E E LEAELEELEAEL E EL E AELAE L E A ------------------ EL 269
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 192 NP LR K E IC EL QVKKNILAE E LSTNKNQ L KQ L TETYEEDRKNYS E VQI R CQR L AL ELA DTKQLIQQ gdyrqenydk VKS E R 271
Cdd:COG1196 270 EE LR L E LE EL ELELEEAQA E EYELLAE L AR L EQDIARLEERRR E LEE R LEE L EE ELA ELEEELEE ---------- LEE E L 339
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 272 DA LE Q E VI E LRRKH E IL EA SHMIQTKERS E LSK E VVTL E QTVTL L QKDKEYLN R QNM EL SVRCAHE E DRL E R L QAQ LE ES 351
Cdd:COG1196 340 EE LE E E LE E AEEEL E EA EA ELAEAEEALL E AEA E LAEA E EELEE L AEELLEAL R AAA EL AAQLEEL E EAE E A L LER LE RL 419
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 352 KKAR EE MY E KYVASR dhykt E Y E NKLHDE LE QIRLKTNQEIDQLRNASREMY E RENRSGGW E VQ ylrtgiwqepshyiii 431
Cdd:COG1196 420 EEEL EE LE E ALAELE ----- E E E EEEEEA LE EAAEEEAELEEEEEALLELLA E LLEEAALL E AA ---------------- 478
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 432 WHKARRN L R EA RDNAVAEK E RAVMA E --- KDALEKHDQLLD R YRELQLSTESK V t E FLHQSK L KSFESERV Q LLQE E TAR 508
Cdd:COG1196 479 LAELLEE L A EA AARLLLLL E AEADY E gfl EGVKAALLLAGL R GLAGAVAVLIG V - E AAYEAA L EAALAAAL Q NIVV E DDE 557
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 509 NL tqcq LECEK Y Q K KLEVLTKE F YS L QASSEKRITELQAQNSEHQ A RL D IYEKLEK E L D EIIMQTAEIENEDEAE rvlfs 588
Cdd:COG1196 558 VA ---- AAAIE Y L K AAKAGRAT F LP L DKIRARAALAAALARGAIG A AV D LVASDLR E A D ARYYVLGDTLLGRTLV ----- 628
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 589 ygyg A NVPTT A K RR LKQSVHLA R R V LQLEKQN S LILKDLEHRKDQVTQLSQ E LDRANSL L NQTQQ py RYLI E SVRQRDSK 668
Cdd:COG1196 629 ---- A ARLEA A L RR AVTLAGRL R E V TLEGEGG S AGGSLTGGSRRELLAALL E AEAELEE L AERLA -- EEEL E LEEALLAE 702
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 1164769123 669 IDSLT E SIAQL E KDVSNLNK E KSALL Q TKNQMALD LE Q LL NHR E E L AA 716
Cdd:COG1196 703 EEEER E LAEAE E ERLEEELE E EALEE Q LEAEREEL LE E LL EEE E L L EE 750
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
503-716
3.36e-04
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 43.60
E-value: 3.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 503 QE E TARN L T Q C Q L E CEKYQ K K L EV L T KE FYS L Q --- A SS E K RI TE L QAQNSEHQAR L diy EK LE K EL D E IIMQT AE IEN E 579
Cdd:COG4942 22 AA E AEAE L E Q L Q Q E IAELE K E L AA L K KE EKA L L kql A AL E R RI AA L ARRIRALEQE L --- AA LE A EL A E LEKEI AE LRA E 98
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 580 D E ------ AE RVLFS Y GY G ANV P TTAKRRLKQSVHLA RR VLQ L EKQN slilkdl EH R KD Q VTQ L SQE L DRANS L LNQTQQ 653
Cdd:COG4942 99 L E aqkeel AE LLRAL Y RL G RQP P LALLLSPEDFLDAV RR LQY L KYLA ------- PA R RE Q AEE L RAD L AELAA L RAELEA 171
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1164769123 654 PYRY L IESVRQRDSKIDS L TESI A QLE K DVSN L N KE KSA L --- L QTKN Q M A LD LE Q L LNHR E EL AA 716
Cdd:COG4942 172 ERAE L EALLAELEEERAA L EALK A ERQ K LLAR L E KE LAE L aae L AELQ Q E A EE LE A L IARL E AE AA 237
PRK03918
PRK03918 DNA double-strand break repair ATPase Rad50;
124-566
7.16e-04
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain]
Cd Length: 880
Bit Score: 43.13
E-value: 7.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 124 MKQ E M E TI L LRQKQLEETNLQ LRE KAGDVRRNLRDF E LTE E QYIK L KA fped Q L SIP E YVSVRFY E LVNP L RKE I C EL QV 203
Cdd:PRK03918 198 KEK E L E EV L REINEISSELPE LRE ELEKLEKEVKEL E ELK E EIEE L EK ---- E L ESL E GSKRKLE E KIRE L EER I E EL KK 273
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 204 KKNI L a EE LSTNKNQ LK QLT E T Y EEDRKN Y S E VQIRCQRLALE L ADTKQL I QQGDY R QENYDKVKSERDA L EQEVI EL RR 283
Cdd:PRK03918 274 EIEE L - EE KVKELKE LK EKA E E Y IKLSEF Y E E YLDELREIEKR L SRLEEE I NGIEE R IKELEEKEERLEE L KKKLK EL EK 352
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 284 KH E I LE AS H MIQTKERSELS ----------- KEVVT LE QTVTL L Q K D KE YLNRQNMELSV R CAHEEDRLER L QAQL EE S K 352
Cdd:PRK03918 353 RL E E LE ER H ELYEEAKAKKE elerlkkrltg LTPEK LE KELEE L E K A KE EIEEEISKITA R IGELKKEIKE L KKAI EE L K 432
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 353 KA --------------- R E E MY E K Y ------ VASRDHYKT E Y E N KL HD EL EQIR -- LK TNQ E IDQ L RNASREMY E R E NRS 409
Cdd:PRK03918 433 KA kgkcpvcgrelteeh R K E LL E E Y taelkr IEKELKEIE E K E R KL RK EL RELE kv LK KES E LIK L KELAEQLK E L E EKL 512
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 410 GGWEVQY L RTG i WQ E ---- PSHY I IIWHKARRNLR E ARDNAVAE K ER A VMAE K -- DAL E KHDQ LL DRYR EL QLSTESKVT 483
Cdd:PRK03918 513 KKYNLEE L EKK - AE E yekl KEKL I KLKGEIKSLKK E LEKLEELK K KL A ELEK K ld ELE E ELAE LL KELE EL GFESVEELE 591
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 484 E F L hq SK L KS F ES E RVQ L LQ ----- E ETARN L TQCQL E CE K YQKK L EVLT K EFYS L qass E K RIT EL QAQN S -- E HQARL 556
Cdd:PRK03918 592 E R L -- KE L EP F YN E YLE L KD aekel E REEKE L KKLEE E LD K AFEE L AETE K RLEE L ---- R K ELE EL EKKY S ee E YEELR 665
490
....*....|
gi 1164769123 557 DI Y EK L EK EL 566
Cdd:PRK03918 666 EE Y LE L SR EL 675
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
265-696
7.48e-04
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 43.12
E-value: 7.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 265 D K VK S ERDALEQ E VI EL RR K H E I LE ASHMIQT K ERS EL S KE VVT LE QTVTL L Q K DK E Y L N RQ NME L SVRC A HE E DRL E R L 344
Cdd:TIGR02168 666 A K TN S SILERRR E IE EL EE K I E E LE EKIAELE K ALA EL R KE LEE LE EELEQ L R K EL E E L S RQ ISA L RKDL A RL E AEV E Q L 745
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 345 QAQLEESK K ARE E MYEKYVASRD hy KT E YENKLHD E L E QIRLKTNQE I D QL RNA sremyerenrsggwevqylrtgiwqe 424
Cdd:TIGR02168 746 EERIAQLS K ELT E LEAEIEELEE -- RL E EAEEELA E A E AEIEELEAQ I E QL KEE -------------------------- 797
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 425 pshyiii WHKA R RN L R E A R DNAVAEK E R A vmae KDAL E KHDQ L LD R YRELQ lstes KVT E F L HQSK lksfes E RVQLLQ E 504
Cdd:TIGR02168 798 ------- LKAL R EA L D E L R AELTLLN E E A ---- ANLR E RLES L ER R IAATE ----- RRL E D L EEQI ------ E ELSEDI E 855
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 505 ET A RNLTQCQLEC E KYQKK LE V L TK E FY SL QASSEKRIT EL QAQNS E HQARLDIYEK L EK EL D E IIMQT A EI E NED E AER 584
Cdd:TIGR02168 856 SL A AEIEELEELI E ELESE LE A L LN E RA SL EEALALLRS EL EELSE E LRELESKRSE L RR EL E E LREKL A QL E LRL E GLE 935
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 585 V lfsygyga NVPTTAK R RLKQSVHLARRVLQ LE KQNSLILKDLEH R KDQVTQLSQ EL DRA N SL ---- LNQTQQP Y RY L ie 660
Cdd:TIGR02168 936 V -------- RIDNLQE R LSEEYSLTLEEAEA LE NKIEDDEEEARR R LKRLENKIK EL GPV N LA aiee YEELKER Y DF L -- 1005
410 420 430
....*....|....*....|....*....|....*.
gi 1164769123 661 svrqr DSKIDS LTE SIAQ LE KDVSNLNK E KSALLQT 696
Cdd:TIGR02168 1006 ----- TAQKED LTE AKET LE EAIEEIDR E ARERFKD 1036
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
18-579
7.67e-04
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 43.00
E-value: 7.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 18 LE S E DIS LE TTVPTDDISSS E E R EGKVRITRQ L I E RKELLHNIQLLKIE L S Q KTMMIDNLKVDYLTKI EELEE K L NDALH 97
Cdd:COG1196 251 LE A E LEE LE AELAELEAELE E L R LELEELELE L E E AQAEEYELLAELAR L E Q DIARLEERRRELEERL EELEE E L AELEE 330
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 98 QKQL L TLR L DNQLA f QQKD A SKYQ E LMKQ E METILLRQKQL E ETNLQLR E KAGDVRRN L RDFELTEEQYIKLKAFP E DQL 177
Cdd:COG1196 331 ELEE L EEE L EELEE - ELEE A EEEL E EAEA E LAEAEEALLEA E AELAEAE E ELEELAEE L LEALRAAAELAAQLEEL E EAE 409
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 178 SI peyvsvrfyelvnp L RKEICE L QVKKNI L A E E L STNKNQLKQLT E TY EE DRKNYS E VQIRCQR L ALE LA D ---- TKQ L 253
Cdd:COG1196 410 EA -------------- L LERLER L EEELEE L E E A L AELEEEEEEEE E AL EE AAEEEA E LEEEEEA L LEL LA E llee AAL L 475
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 254 IQQGDYRQ E NYDKVKSERDA L EQEVIELR ------ RKHEI L EASHMIQTKERSELSK E VVTLEQTVTL L QKDKEYLNRQN 327
Cdd:COG1196 476 EAALAELL E ELAEAAARLLL L LEAEADYE gflegv KAALL L AGLRGLAGAVAVLIGV E AAYEAALEAA L AAALQNIVVED 555
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 328 M E LSVRC ----- A HEED R LER L QAQLEESKK A REEMYEKYVASRDHYKTEYENKLH D ELEQIRLK T NQE -- IDQL R NASR 400
Cdd:COG1196 556 D E VAAAA ieylk A AKAG R ATF L PLDKIRARA A LAAALARGAIGAAVDLVASDLREA D ARYYVLGD T LLG rt LVAA R LEAA 635
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 401 EMYERENRSGGW EV QYLRT G IWQEP S HYIIIWHKARRN L R EA RDNAVAEK ER AVMA E KDAL E KHDQLLDRY REL QLST E S 480
Cdd:COG1196 636 LRRAVTLAGRLR EV TLEGE G GSAGG S LTGGSRRELLAA L L EA EAELEELA ER LAEE E LELE E ALLAEEEEE REL AEAE E E 715
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 481 KVT E F L HQ sklksfes E RVQLLQ E ETARN L TQCQ LE C E KYQKKLEVLTKEFYSLQASS E KRITE L QAQNSEH ---- QARL 556
Cdd:COG1196 716 RLE E E L EE -------- E ALEEQL E AEREE L LEEL LE E E ELLEEEALEELPEPPDLEEL E RELER L EREIEAL gpvn LLAI 787
570 580
....*....|....*....|...
gi 1164769123 557 DI YE K LE KEL D EIIM Q TAEI E NE 579
Cdd:COG1196 788 EE YE E LE ERY D FLSE Q REDL E EA 810
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
19-284
8.07e-04
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 43.12
E-value: 8.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 19 E S E DI S LETTVPTD D ISSS E EREGKV -- RI TRQLI E RK EL LHN I QL L KIE L SQKTMMIDNLKV dylt K IEELE EKLNDAL 96
Cdd:TIGR02168 720 E L E EL S RQISALRK D LARL E AEVEQL ee RI AQLSK E LT EL EAE I EE L EER L EEAEEELAEAEA ---- E IEELE AQIEQLK 795
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 97 HQKQL L TLR LD --- NQ L AFQQKD A SKYQ E LMKQEMET I LLRQKQ LE ETNL Q LR E KAG D VRRNLRDF E LT EE QYIK L kafp 173
Cdd:TIGR02168 796 EELKA L REA LD elr AE L TLLNEE A ANLR E RLESLERR I AATERR LE DLEE Q IE E LSE D IESLAAEI E EL EE LIEE L ---- 871
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 174 E DQ L SIPEYVSVRFY E LVNP LR K E IC EL QVKKNI L AEEL S TNKNQ L KQ L T E TYEEDRKNYSEVQI R CQR L ALE L ADTKQ L 253
Cdd:TIGR02168 872 E SE L EALLNERASLE E ALAL LR S E LE EL SEELRE L ESKR S ELRRE L EE L R E KLAQLELRLEGLEV R IDN L QER L SEEYS L 951
250 260 270
....*....|....*....|....*....|.
gi 1164769123 254 IQQGD yr QENYD K VKSERDALEQEVIE L RR K 284
Cdd:TIGR02168 952 TLEEA -- EALEN K IEDDEEEARRRLKR L EN K 980
CCDC158
pfam15921 Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
141-721
1.77e-03
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain]
Cd Length: 1112
Bit Score: 42.03
E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 141 TNLQL R EKAGDVRRN LR DFE l TE EQ Y I K LKA FP - EDQL SIPEYV S VRFY EL V nplrkeice LQ VKKNILAEEL S TNKNQL 219
Cdd:pfam15921 211 STMHF R SLGSAISKI LR ELD - TE IS Y L K GRI FP v EDQL EALKSE S QNKI EL L --------- LQ QHQDRIEQLI S EHEVEI 280
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 220 KQ LTE TYEED R KNYSEV Q IRCQ rlaleladtkql I Q Q GDY R QE N YDKVKSER D a LE QE V IE LR R kh E IL EA SH M IQT K e R 299
Cdd:pfam15921 281 TG LTE KASSA R SQANSI Q SQLE ------------ I I Q EQA R NQ N SMYMRQLS D - LE ST V SQ LR S -- E LR EA KR M YED K - I 344
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 300 S EL S K EV V TLEQTV T LLQKDKEYLNRQNME L SVRCAHEEDR L ERLQAQ L EES K KAREEMYEKYVASR --- DH YKT E YENK 376
Cdd:pfam15921 345 E EL E K QL V LANSEL T EARTERDQFSQESGN L DDQLQKLLAD L HKREKE L SLE K EQNKRLWDRDTGNS iti DH LRR E LDDR 424
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 377 ------ L HDE L EQIRLKTNQEIDQLRN A SREMY E RENRSGGWEV Q YLR T giw Q E PSHYIIIWHK A RRNLR E ARDNA V A -- 448
Cdd:pfam15921 425 nmevqr L EAL L KAMKSECQGQMERQMA A IQGKN E SLEKVSSLTA Q LES T --- K E MLRKVVEELT A KKMTL E SSERT V S dl 501
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 449 ----- EKERA VM A EKDALE K HDQLL D - RYR ELQ - L ST E SKVTEFLHQS ---- KL KSF E SER V QLLQEETAR N L TQ ----- 512
Cdd:pfam15921 502 taslq EKERA IE A TNAEIT K LRSRV D l KLQ ELQ h L KN E GDHLRNVQTE ceal KL QMA E KDK V IEILRQQIE N M TQ lvgqh 581
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 513 ----------- C QLE C E KYQKK LE V lt K EF YS L QASSEKR I T EL Q A QN S EHQ ----------- A RL DIYEKLEK E L D EII 570
Cdd:pfam15921 582 grtagamqvek A QLE K E INDRR LE L -- Q EF KI L KDKKDAK I R EL E A RV S DLE lekvklvnags E RL RAVKDIKQ E R D QLL 659
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 571 MQTAEIE NE ----- DEA E RVLFSYGYGANVPT T AKRR LK QSVHL A RRV L Q lek Q NSLI LK DL E HRKDQVTQLSQELDR an 645
Cdd:pfam15921 660 NEVKTSR NE lnsls EDY E VLKRNFRNKSEEME T TTNK LK MQLKS A QSE L E --- Q TRNT LK SM E GSDGHAMKVAMGMQK -- 734
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1164769123 646 sllnqtqqpyrylie SVRQRDSK ID S L TES I AQ LE KDVS N L NKEK SA L LQT KN QMALD L EQLLNHREEL A AMKQI L 721
Cdd:pfam15921 735 --------------- QITAKRGQ ID A L QSK I QF LE EAMT N A NKEK HF L KEE KN KLSQE L STVATEKNKM A GELEV L 795
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
209-402
3.52e-03
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 40.52
E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 209 A EELSTNKNQ L K QL TETYE E DR K NYSEVQIRCQR L ALE LA DTKQL I QQ gdy RQENYDKVKS E RD ALE Q E VI EL RRKHEI L 288
Cdd:COG4942 19 A DAAAEAEAE L E QL QQEIA E LE K ELAALKKEEKA L LKQ LA ALERR I AA --- LARRIRALEQ E LA ALE A E LA EL EKEIAE L 95
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 289 E A SHMI Q TK E RS EL SKEVVT L EQT ---- VT L LQK D K ---------- E YL NRQNM E LSVRCAHEEDR L ER L Q A Q LE ESKKA 354
Cdd:COG4942 96 R A ELEA Q KE E LA EL LRALYR L GRQ ppla LL L SPE D F ldavrrlqyl K YL APARR E QAEELRADLAE L AA L R A E LE AERAE 175
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1164769123 355 R E EMYEKYVAS R DHYKTEYE -- N KL HDE LE QIRLKTNQ E IDQ L RNASR E M 402
Cdd:COG4942 176 L E ALLAELEEE R AALEALKA er Q KL LAR LE KELAELAA E LAE L QQEAE E L 225
EnvC
COG4942 Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
625-740
7.96e-03
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain]
Cd Length: 377
Bit Score: 39.36
E-value: 7.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 625 KDLEHRKDQVT QL S QE LDRANSL L NQTQQPYRY L IESVRQRDSK I DS L TES I AQ LE KDVSN L NK E KSA L LQTKNQMALD L 704
Cdd:COG4942 20 DAAAEAEAELE QL Q QE IAELEKE L AALKKEEKA L LKQLAALERR I AA L ARR I RA LE QELAA L EA E LAE L EKEIAELRAE L 99
90 100 110
....*....|....*....|....*....|....*.
gi 1164769123 705 E QL lnh R EELA AMKQI L VKM h SKHSENS LLL TKTEP 740
Cdd:COG4942 100 E AQ --- K EELA ELLRA L YRL - GRQPPLA LLL SPEDF 131
COG4913
COG4913 Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
262-475
8.94e-03
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain]
Cd Length: 1089
Bit Score: 39.51
E-value: 8.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 262 E NY D KVKSER D A L --- EQEVIEL R RKH E I LE ashmiqtk ERS EL SKEVVTLEQTVTL L QKDKEY L NRQNMELSV ----- R 333
Cdd:COG4913 225 E AA D ALVEHF D D L era HEALEDA R EQI E L LE -------- PIR EL AERYAAARERLAE L EYLRAA L RLWFAQRRL ellea E 296
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164769123 334 CAHEEDR L E RL Q A Q LE ESKKAREEMY E K yvas R D HYKTEYENKLH D E LEQ IR lktn Q EI DQ L R nas RE MY ERE N R SGGW E 413
Cdd:COG4913 297 LEELRAE L A RL E A E LE RLEARLDALR E E ---- L D ELEAQIRGNGG D R LEQ LE ---- R EI ER L E --- RE LE ERE R R RARL E 365
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1164769123 414 v QY L RTGIWQE P SH y IIIWHKA R RNLREARDNAVA E K E RAVM A EKD A LEKHDQ L LDRY REL Q 475
Cdd:COG4913 366 - AL L AALGLPL P AS - AEEFAAL R AEAAALLEALEE E L E ALEE A LAE A EAALRD L RREL REL E 425
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
