|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
454-731 |
1.55e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 1.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 454 AAKESLIFGLRTERKVWGHELAQQGSSLA---QNRGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKL 530
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAeleKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 531 KDCLQEKDEHIKRLQEKITEIEkctqEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHD 610
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELE----ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 611 KGELLCHLETQVKEVKEKFENKEKKLKAERDKSIELQKNaMEKLHSMDDAFKRQVDAIVEAhQAEIAQLANEKQKCIDSA 690
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE-IEELEELIEELESELEALLNE-RASLEEALALLRSELEEL 899
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1164778612 691 NLKVHQIEKEMREL---LEETCKNKKTMEAKIKQLAFALNEIQQ 731
Cdd:TIGR02168 900 SEELRELESKRSELrreLEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
267-607 |
5.52e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 5.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 267 SLHREREQAQQLHqllALKEQEhrKELETREFFTDADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRi 346
Cdd:TIGR02168 204 SLERQAEKAERYK---ELKAEL--RELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS- 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 347 altvearrfqdvkdgfenvatELAKSKHAliwAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAANLQNQINTLE 426
Cdd:TIGR02168 278 ---------------------ELEEEIEE---LQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 427 ILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKvwghELAQQGSSLAQNRGKLEAQIESLsreneclrktn 506
Cdd:TIGR02168 334 ELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE----ELEEQLETLRSKVAQLELQIASL----------- 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 507 esdsdalrikckiiddqTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQldekssQLDEVLEKLERHNERKEKLKQQ 586
Cdd:TIGR02168 399 -----------------NNEIERLEARLERLEDRRERLQQEIEELLKKLEEA------ELKELQAELEELEEELEELQEE 455
|
330 340
....*....|....*....|.
gi 1164778612 587 LKGKEVELEEIRKAYSTLNRK 607
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQA 476
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
472-731 |
4.80e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 4.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 472 HELAQQGSSLAQNRGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEI 551
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 552 EkctqEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFEN 631
Cdd:TIGR02168 322 E----AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIAS 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 632 KEKKLKAERDKSIELQKNAMEKLHSMDDAFKRQVDAIVEAHQAEIA---QLANEKQKCIDSANLKVHQIEKEMRELLEET 708
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEeleEELEELQEELERLEEALEELREELEEAEQAL 477
|
250 260
....*....|....*....|...
gi 1164778612 709 CKNKKTmEAKIKQLAFALNEIQQ 731
Cdd:TIGR02168 478 DAAERE-LAQLQARLDSLERLQE 499
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
222-600 |
6.14e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 6.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 222 LRTLEKTLEkmerqkrqqqaaqirliqevelkasaadreiyllrtSLHREREQAQQLHQLlalkeQEHRKELETREFFTD 301
Cdd:COG1196 195 LGELERQLE------------------------------------PLERQAEKAERYREL-----KEELKELEAELLLLK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 302 ADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYmdleNEFRIALTVEARRFQDVKDGFENVATELAKSKHALIWAQR 381
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAEL----EELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 382 KENESSSLIKDLtcmvKEQKTKLAEVSKLKQETAANLQNQINTLEILIEDDKQksiQIELLKHEKVQLISELAAKESLIF 461
Cdd:COG1196 310 RRRELEERLEEL----EEELAELEEELEELEEELEELEEELEEAEEELEEAEA---ELAEAEEALLEAEAELAEAEEELE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 462 GLRTERKvwghELAQQGSSLAQNRGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHI 541
Cdd:COG1196 383 ELAEELL----EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1164778612 542 KRLQEKITEiekcTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKA 600
Cdd:COG1196 459 EALLELLAE----LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
210-604 |
6.37e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.73 E-value: 6.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 210 KAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAADREIYLLRTSLHREREQA----QQLHQLLA-- 283
Cdd:pfam15921 307 QARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESgnldDQLQKLLAdl 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 284 -LKEQEHRKELETREFFTDADFQDALAKEIAKEE--------KKHEQMIKEYQEKIDVLSQQYMDL---ENEFRIALTVE 351
Cdd:pfam15921 387 hKREKELSLEKEQNKRLWDRDTGNSITIDHLRRElddrnmevQRLEALLKAMKSECQGQMERQMAAiqgKNESLEKVSSL 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 352 ARRFQDVKDGFENVATELAKSKHALIWAQRKenessslIKDLTCMVKEQKTKL----AEVSKLKQETAANLQnqiNTLEI 427
Cdd:pfam15921 467 TAQLESTKEMLRKVVEELTAKKMTLESSERT-------VSDLTASLQEKERAIeatnAEITKLRSRVDLKLQ---ELQHL 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 428 LIEDDKQKSIQIELlkhEKVQLisELAAKESLIFGLRTERKVWGHELAQQG---SSLAQNRGKLEAQIESL--------- 495
Cdd:pfam15921 537 KNEGDHLRNVQTEC---EALKL--QMAEKDKVIEILRQQIENMTQLVGQHGrtaGAMQVEKAQLEKEINDRrlelqefki 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 496 --SRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQldekssqldEVLE-- 571
Cdd:pfam15921 612 lkDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDY---------EVLKrn 682
|
410 420 430
....*....|....*....|....*....|....*.
gi 1164778612 572 ---KLERHNERKEKLKQQLKGKEVELEEIRKAYSTL 604
Cdd:pfam15921 683 frnKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSM 718
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
179-551 |
3.04e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 3.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 179 IIFRERNSKgQLEVMVHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAAD 258
Cdd:TIGR02168 672 ILERRREIE-ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 259 ReiyllrtsLHREREQAQQLHQLLALKEQEHRKELetrefftdadfqdalaKEIAKEEKKHEQMIKEYQEKIDVLSQQYM 338
Cdd:TIGR02168 751 Q--------LSKELTELEAEIEELEERLEEAEEEL----------------AEAEAEIEELEAQIEQLKEELKALREALD 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 339 DLENEfriaLTVEARRFQDVKDGFENVATELAkskhaliwaqrkenessslikdltcMVKEQKTKLAEVSKLKQETAANL 418
Cdd:TIGR02168 807 ELRAE----LTLLNEEAANLRERLESLERRIA-------------------------ATERRLEDLEEQIEELSEDIESL 857
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 419 QNQINTLEILIEddkQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKVWG---HELAQQGSSLAQNRGKLEAQIESL 495
Cdd:TIGR02168 858 AAEIEELEELIE---ELESELEALLNERASLEEALALLRSELEELSEELRELEskrSELRRELEELREKLAQLELRLEGL 934
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1164778612 496 -SRENECLRKTNESDSDALrikckiiDDQTETIRKLKDCLQEKDEHIKRLQEKITEI 551
Cdd:TIGR02168 935 eVRIDNLQERLSEEYSLTL-------EEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
251-587 |
3.54e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 3.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 251 ELKASAADREIYLLRTSLHREREQAQQLHQLLALKEQEHrkeletrefftdadfqDALAKEIAKEEKKHEQMIKEYQEki 330
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEEL----------------EELTAELQELEEKLEELRLEVSE-- 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 331 dvlsqqymdLENEFRIaltvearrfqdvkdgfenvatelakskhaliwAQRKENESSSLIKDLTCMVKEQKTKLAEVSKL 410
Cdd:TIGR02168 279 ---------LEEEIEE--------------------------------LQKELYALANEISRLEQQKQILRERLANLERQ 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 411 KQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIF----GLRTERKVWG------HELAQQGSS 480
Cdd:TIGR02168 318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEelesRLEELEEQLEtlrskvAQLELQIAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 481 LAQNRGKLEAQIESLSRENECLRKTNESDSDAL-RIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKIteiekctQEQL 559
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALEEL-------REEL 470
|
330 340
....*....|....*....|....*...
gi 1164778612 560 DEKSSQLDEVLEKLERHNERKEKLKQQL 587
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLDSLERLQ 498
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
124-731 |
4.42e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 4.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 124 YQSLVEQLDQEREKRWRAEQAENKLMDYIDELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKGQLEVMVHKLQNEIKK 203
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 204 LTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAqirlIQEVELKASAADREIYLLRTSLHREREQAQQLHQLLA 283
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE----LESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 284 LKEQE---HRKELETrefftdadfQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLE-NEFRIALTVEARRFQDVK 359
Cdd:TIGR02168 390 QLELQiasLNNEIER---------LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 360 DGFENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQEtAANLQNQINTLEILIEDDKQKSIQI 439
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN-QSGLSGILGVLSELISVDEGYEAAI 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 440 ELLKHEKVQ--LISELAAKESLIFGLRTERKVWGHELAQQGSSLAQNRGKLEaqiESLSRENECLRKTNESDSDALRIK- 516
Cdd:TIGR02168 540 EAALGGRLQavVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDR---EILKNIEGFLGVAKDLVKFDPKLRk 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 517 --------CKIIDDQTETIRKLKDCLQE-----KDEHIKRLQEKITEIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKL 583
Cdd:TIGR02168 617 alsyllggVLVVDDLDNALELAKKLRPGyrivtLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAEL 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 584 KQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKEKKLKAERDKSIELQKNAM---EKLHSMDDA 660
Cdd:TIGR02168 697 EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEeleERLEEAEEE 776
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1164778612 661 FKRQVDAIVEAhQAEIAQLANEKQ---KCIDSANLKVHQIEKEMRELLEETCKNKKTMEAKIKQLAFALNEIQQ 731
Cdd:TIGR02168 777 LAEAEAEIEEL-EAQIEQLKEELKalrEALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
129-598 |
5.33e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 5.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 129 EQLDQEREKRWRAEQAE-----NKLMDYIDELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKGQLEVmvhkLQNEIKK 203
Cdd:PRK02224 187 GSLDQLKAQIEEKEEKDlherlNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELET----LEAEIED 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 204 LTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQqqaaqirLIQEVELKaSAADREIYLLRTSLHREREQAQQLHQLLA 283
Cdd:PRK02224 263 LRETIAETEREREELAEEVRDLRERLEELEEERDD-------LLAEAGLD-DADAEAVEARREELEDRDEELRDRLEECR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 284 LKEQEHRKELET-REfftDADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRIAltveARRFQDVKDGF 362
Cdd:PRK02224 335 VAAQAHNEEAESlRE---DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL----RERFGDAPVDL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 363 ENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEvSKLKQ-----------ETAANLQNQINTLEILIED 431
Cdd:PRK02224 408 GNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEA-GKCPEcgqpvegsphvETIEEDRERVEELEAELED 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 432 DKQKSIQIEllkhEKVQLISELAAKESLIFGLRTERKVWGHELAQQGSSLAQNRGKLE------AQIESLSRENECLRKT 505
Cdd:PRK02224 487 LEEEVEEVE----ERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEelreraAELEAEAEEKREAAAE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 506 NESDSDALRIKCKIID----------DQTETIRKLKDCLQEKDEHIKRLQEK---ITEIEKCTQEQLDEKSSQ------- 565
Cdd:PRK02224 563 AEEEAEEAREEVAELNsklaelkeriESLERIRTLLAAIADAEDEIERLREKreaLAELNDERRERLAEKRERkreleae 642
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 1164778612 566 -------------------LDEVLEKLERHNERKEKLKQQLKGKEVELEEIR 598
Cdd:PRK02224 643 fdearieearedkeraeeyLEQVEEKLDELREERDDLQAEIGAVENELEELE 694
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
120-708 |
5.45e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 5.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 120 EDNTYQSLVEQLDQEREKRWRAEQAENKLMDYIDELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKGQLEVMVHKLQN 199
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 200 EIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAADREIYLLRTSLHREREQAQQLH 279
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 280 QLLALKEQEHRKELETREFFTDADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQyMDLENEFRIALTVEARRFQDVK 359
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA-LLELLAELLEEAALLEAALAEL 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 360 DGFENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVS-KLKQETAANLQNQINTLEILIEDDKQKSIQ 438
Cdd:COG1196 483 LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGvEAAYEAALEAALAAALQNIVVEDDEVAAAA 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 439 IELLKHEK--------VQLISELAAKESLIFGLRTERKVWGHE-LAQQGSSLAQNRGKLEAQIESLSRENECLRKTNESD 509
Cdd:COG1196 563 IEYLKAAKagratflpLDKIRARAALAAALARGAIGAAVDLVAsDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTL 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 510 SDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKG 589
Cdd:COG1196 643 AGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 590 KEVELEEIRKAYSTLNRkwhdkgELLCHLETQVKEVKEKFENKEKKLKAERDksIELQKNAMEKLHSMDdafkrqVDAIV 669
Cdd:COG1196 723 EEALEEQLEAEREELLE------ELLEEEELLEEEALEELPEPPDLEELERE--LERLEREIEALGPVN------LLAIE 788
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 1164778612 670 EAHQAE---------IAQLANEKQKcIDSAnlkVHQIEKEMRELLEET 708
Cdd:COG1196 789 EYEELEerydflseqREDLEEARET-LEEA---IEEIDRETRERFLET 832
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
128-733 |
1.15e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 128 VEQLDQEREK--RWRAEQAENKLMD---YIDELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKGQLEvmvhKLQNEIK 202
Cdd:COG1196 202 LEPLERQAEKaeRYRELKEELKELEaelLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE----ELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 203 KLTVELmkaKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAADREIYLLRTSLHREREQAQQLHQLL 282
Cdd:COG1196 278 ELELEL---EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 283 ALKEQEHRKELETREFFTDADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRIALTVEARRFQDVKDGF 362
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 363 ENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQEtAANLQNQINTLEILIEDDKQKSIQIELL 442
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE-LAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 443 KHEKVQLISELAAKESLIFGLRTERKVWGHELAQQGSSLAQNRGKLEAQIESLSRENEcLRKTNESdsdalrikckiidd 522
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKA-GRATFLP-------------- 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 523 qtetIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYS 602
Cdd:COG1196 579 ----LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 603 TLNRKwhdkgellcHLETQVKEVKEKFENKEKKLKAERDKSIELQKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANE 682
Cdd:COG1196 655 GGSAG---------GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA 725
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 1164778612 683 KQKCIDSANLKVHQIEKEMRELLEETCKNKKTMEAKIKQLAFALNEIQQDM 733
Cdd:COG1196 726 LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
527-705 |
1.57e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 527 IRKLKDCLQEKDEHIKRLQEKITEIEkctqEQLDEKSSQLDEVLEKLERH-NERKEKLKQQLKGKEVELEEIRKAYSTLN 605
Cdd:COG4913 290 LELLEAELEELRAELARLEAELERLE----ARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 606 rkwhdkgELLCHLETQVKEVKEKFENKEKKLKAERDKSIELQKNAMEKLHSMDDAFKRQVDAIvEAHQAEIAQLANeKQK 685
Cdd:COG4913 366 -------ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRREL-RELEAEIASLER-RKS 436
|
170 180
....*....|....*....|
gi 1164778612 686 CIDSanlKVHQIEKEMRELL 705
Cdd:COG4913 437 NIPA---RLLALRDALAEAL 453
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
405-607 |
2.70e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 2.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 405 AEVSKLKQETAANLQNQINTLEILIEDDKQksiQIELLKHEKVQLISELAAKESLIFGLRTERKVWGHELAQQGSSLAQN 484
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKK---EEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 485 RGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKcTQEQLDEKSS 564
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAA-LRAELEAERA 174
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1164778612 565 QLDEVLEKLErhnERKEKLKQQLKGKEVELEEIRKAYSTLNRK 607
Cdd:COG4942 175 ELEALLAELE---EERAALEALKAERQKLLARLEKELAELAAE 214
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
412-706 |
2.78e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 412 QETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERkvwgHELAQQGSSLAQNRGKLEAQ 491
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI----SALRKDLARLEAEVEQLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 492 IESLSRENECLRKTNESdsdalrikckiiddQTETIRKLKDCLQEKDEHIKRLQEKITEIekctQEQLDEKSSQLDEVLE 571
Cdd:TIGR02168 749 IAQLSKELTELEAEIEE--------------LEERLEEAEEELAEAEAEIEELEAQIEQL----KEELKALREALDELRA 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 572 KLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKEKKLKAERDKSIELQKNAM 651
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA 890
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1164778612 652 EKLHSMDDAFKRQVDaiVEAHQAEIAQLANEKQKCIDSANLKVHQIEKEMRELLE 706
Cdd:TIGR02168 891 LLRSELEELSEELRE--LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
398-600 |
3.29e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 3.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 398 KEQKTKLAEVSKLKQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKVWGHELAQQ 477
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 478 GSSLaqnrGKLEAQIESlsreneclrktnESDSDALR---IKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKC 554
Cdd:COG3883 99 GGSV----SYLDVLLGS------------ESFSDFLDrlsALSKIADADADLLEELKADKAELEAKKAELEAKLAELEAL 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1164778612 555 TQEQLDEKS---SQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKA 600
Cdd:COG3883 163 KAELEAAKAeleAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
256-598 |
4.10e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.73 E-value: 4.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 256 AADREIYLLRTSLHREREQAQQLHQLLALKEQEHRKEL-ETREFFTD--------ADFQDALAKE---IAKEEKKHEQMI 323
Cdd:pfam07888 52 AANRQREKEKERYKRDREQWERQRRELESRVAELKEELrQSREKHEEleekykelSASSEELSEEkdaLLAQRAAHEARI 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 324 KEYQEKIDVLSQQYMDLENEFRialtveaRRFQDVKDGFENVATELAKSKHALIWAQRKENESSSLIKDLtcmvKEQKTK 403
Cdd:pfam07888 132 RELEEDIKTLTQRVLERETELE-------RMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEF----QELRNS 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 404 LAEvsklKQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKVWGH----------- 472
Cdd:pfam07888 201 LAQ----RDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAqrdrtqaelhq 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 473 ---ELAQQGSSLAQNRGKLEAQIESLSRENECLRKTNESDSDalrikckiiddqteTIRKLKDCLQEKDEhikRLQEKIT 549
Cdd:pfam07888 277 arlQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKD--------------RIEKLSAELQRLEE---RLQEERM 339
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1164778612 550 EIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIR 598
Cdd:pfam07888 340 EREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQ 388
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
128-610 |
5.44e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 5.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 128 VEQLDQEREKRWRAEQAENKLmDYIDELHKHANEKEDIHSLALLTT--DRLKEIIFRERNSKGQLEVMVHKLQNEIKKLT 205
Cdd:COG4913 251 IELLEPIRELAERYAAARERL-AELEYLRAALRLWFAQRRLELLEAelEELRAELARLEAELERLEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 206 VELMKAKDQQEDHLKH-LRTLEKTLEKMERQKRQQQAAQIRLiqEVELKASAAD-----REIYLLRTSLHREREQAQQLH 279
Cdd:COG4913 330 AQIRGNGGDRLEQLEReIERLERELEERERRRARLEALLAAL--GLPLPASAEEfaalrAEAAALLEALEEELEALEEAL 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 280 QLLALKEQEHRKELetrefftdadfqDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQ-------------YMDLENE--- 343
Cdd:COG4913 408 AEAEAALRDLRREL------------RELEAEIASLERRKSNIPARLLALRDALAEAlgldeaelpfvgeLIEVRPEeer 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 344 -----------FRIALTVEARRFQDVKDGFENVATELA----KSKHALIWAQRKENESSSLIKDLTcmVKEQ------KT 402
Cdd:COG4913 476 wrgaiervlggFALTLLVPPEHYAAALRWVNRLHLRGRlvyeRVRTGLPDPERPRLDPDSLAGKLD--FKPHpfrawlEA 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 403 KLAEVSKLKQ-ETAANLQN---------QINTLEILIEDDKQKSI------------QIELLKHEKVQLISELAAKESLI 460
Cdd:COG4913 554 ELGRRFDYVCvDSPEELRRhpraitragQVKGNGTRHEKDDRRRIrsryvlgfdnraKLAALEAELAELEEELAEAEERL 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 461 FGLRTERKvwghELAQQGSSLAQ---------NRGKLEAQIESLSRENECLRKTN-------------ESDSDALRikcK 518
Cdd:COG4913 634 EALEAELD----ALQERREALQRlaeyswdeiDVASAEREIAELEAELERLDASSddlaaleeqleelEAELEELE---E 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 519 IIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKC----TQEQLDEKSSQL--DEVLEKLERH-NERKEKLKQQLKGKE 591
Cdd:COG4913 707 ELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLarleLRALLEERFAAAlgDAVERELRENlEERIDALRARLNRAE 786
|
570
....*....|....*....
gi 1164778612 592 VELEEIRKAYstlNRKWHD 610
Cdd:COG4913 787 EELERAMRAF---NREWPA 802
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
503-728 |
7.31e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 7.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 503 RKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQLDEKSSQLDEVLEKLERHNERKEK 582
Cdd:TIGR02169 662 PRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 583 LKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENkekklkaERDKSIELQKNAMEKLHSMDDAFK 662
Cdd:TIGR02169 742 LEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH-------SRIPEIQAELSKLEEEVSRIEARL 814
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1164778612 663 RQVDAIVEAHQAEIAQLANEKQKCIDSANLKVHQIeKEMRELLEETCKNKKTMEAKIKQLAFALNE 728
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI-KSIEKEIENLNGKKEELEEELEELEAALRD 879
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
381-721 |
8.23e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 8.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 381 RKENESSSLIKDLTCMVKEQKTKLAEVSKLKQEtaanlqnqintLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLI 460
Cdd:TIGR04523 121 KLEVELNKLEKQKKENKKNIDKFLTEIKKKEKE-----------LEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNI 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 461 FGLRTERKVWGHELAQQGSSLAQNRgKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDdqtETIRKLKDCLQEKDEH 540
Cdd:TIGR04523 190 DKIKNKLLKLELLLSNLKKKIQKNK-SLESQISELKKQNNQLKDNIEKKQQEINEKTTEIS---NTQTQLNQLKDEQNKI 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 541 IKRLQEKITEIEKcTQEQLDEKSSQLDEVLEKLERHNERKE-----KLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELL 615
Cdd:TIGR04523 266 KKQLSEKQKELEQ-NNKKIKELEKQLNQLKSEISDLNNQKEqdwnkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQI 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 616 CHLETQVKEVKEKFENKEKKLKAERDKSIELQKNAMEKLHSMDDAFKRQVDaiVEAHQAEIAQLANEKQKCIDSANLKVH 695
Cdd:TIGR04523 345 SQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIND--LESKIQNQEKLNQQKDEQIKKLQQEKE 422
|
330 340
....*....|....*....|....*.
gi 1164778612 696 QIEKEMRELLEETCKNKKTMEAKIKQ 721
Cdd:TIGR04523 423 LLEKEIERLKETIIKNNSEIKDLTNQ 448
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
272-510 |
8.46e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 8.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 272 REQAQQLHQLLAlKEQEHRKELETrefftdadfQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRIALTVE 351
Cdd:COG4942 23 AEAEAELEQLQQ-EIAELEKELAA---------LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 352 ARRFQDVKDGFENVATELAK-------SKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAAN---LQNQ 421
Cdd:COG4942 93 AELRAELEAQKEELAELLRAlyrlgrqPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALraeLEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 422 INTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESlifglrterkvwghELAQQGSSLAQNRGKLEAQIESLSRENEC 501
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELA--------------ELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*....
gi 1164778612 502 LRKTNESDS 510
Cdd:COG4942 239 AAERTPAAG 247
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
182-712 |
9.33e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 9.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 182 RERNSKGQlevmvHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVElkaSAADREI 261
Cdd:pfam15921 133 RRRESQSQ-----EDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFE---EASGKKI 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 262 YllrtslhrEREQAQQLH-QLLALKEQEHRKELETREFFtdadfqdaLAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDL 340
Cdd:pfam15921 205 Y--------EHDSMSTMHfRSLGSAISKILRELDTEISY--------LKGRIFPVEDQLEALKSESQNKIELLLQQHQDR 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 341 ENEFRIALTVEARRFQDVKDGFENVATELaKSKHALIWAQRKENESSSL--IKDLTCMVKEQKTKLAEVSKLKQETAANL 418
Cdd:pfam15921 269 IEQLISEHEVEITGLTEKASSARSQANSI-QSQLEIIQEQARNQNSMYMrqLSDLESTVSQLRSELREAKRMYEDKIEEL 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 419 QNQI-------------------------NTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKVWGHE 473
Cdd:pfam15921 348 EKQLvlanseltearterdqfsqesgnldDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNME 427
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 474 LAQQGSSL----AQNRGKLEAQIESLSRENECLRKTN------ESDSDALR-------IKCKIIDDQTETIRKLKDCLQE 536
Cdd:pfam15921 428 VQRLEALLkamkSECQGQMERQMAAIQGKNESLEKVSsltaqlESTKEMLRkvveeltAKKMTLESSERTVSDLTASLQE 507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 537 KDEHIKRLQEKITEIEKCTQEQLDEkSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLnrkwhdkgellc 616
Cdd:pfam15921 508 KERAIEATNAEITKLRSRVDLKLQE-LQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENM------------ 574
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 617 hleTQVKEVKEKFENKEKKLKAERDKSIELQKNAMEKLHSMDDafkrQVDAIVEAHQAEIAQLANEKQKCIDSANLK--- 693
Cdd:pfam15921 575 ---TQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKD----KKDAKIRELEARVSDLELEKVKLVNAGSERlra 647
|
570 580
....*....|....*....|.
gi 1164778612 694 VHQIEKEMRELLEE--TCKNK 712
Cdd:pfam15921 648 VKDIKQERDQLLNEvkTSRNE 668
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
195-500 |
9.37e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 9.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 195 HKLQNEIKKLTVELmkAKDQQEDHLKHLRTLEKTLEKMERQKRQQQaaqiRLIQEVELKASAADREIYLLrtslhrEREQ 274
Cdd:TIGR02168 216 KELKAELRELELAL--LVLRLEELREELEELQEELKEAEEELEELT----AELQELEEKLEELRLEVSEL------EEEI 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 275 AQQLHQLLALKEQEHRKELETREFFTDADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENE---FRIALTVE 351
Cdd:TIGR02168 284 EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEElesLEAELEEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 352 ARRFQDVKDGFENVATELAKSKHALIWAQRKENESSSLIKDLtcmvKEQKTKLAE-VSKLKQETAANLQNQINTleilie 430
Cdd:TIGR02168 364 EAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL----EARLERLEDrRERLQQEIEELLKKLEEA------ 433
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 431 DDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKVWGHELAQQGSSLAQNRGKLEAqIESLSRENE 500
Cdd:TIGR02168 434 ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS-LERLQENLE 502
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
538-732 |
1.07e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 538 DEHIKRLQEKITEIekctQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLch 617
Cdd:COG3883 15 DPQIQAKQKELSEL----QAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL-- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 618 letqvkevkekfenkekklkAERDKSIELQKNAMEKL------HSMDDAFKRQ--VDAIVEAHQAEIAQLANEKQKcIDS 689
Cdd:COG3883 89 --------------------GERARALYRSGGSVSYLdvllgsESFSDFLDRLsaLSKIADADADLLEELKADKAE-LEA 147
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1164778612 690 ANLKVHQIEKEMRELLEETCKNKKTMEAKIKQLAFALNEIQQD 732
Cdd:COG3883 148 KKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAE 190
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
556-733 |
1.25e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 556 QEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKEKK 635
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 636 LKAERDKsIELQKNAMEKLH------------SMDDAFKRQ--VDAIVEAHQAEIAQLANEKQKcIDSANLKVHQIEKEM 701
Cdd:COG4942 99 LEAQKEE-LAELLRALYRLGrqpplalllspeDFLDAVRRLqyLKYLAPARREQAEELRADLAE-LAALRAELEAERAEL 176
|
170 180 190
....*....|....*....|....*....|..
gi 1164778612 702 RELLEETCKNKKTMEAKIKQLAFALNEIQQDM 733
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKEL 208
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
398-607 |
2.02e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 398 KEQKTKLAEVSKLKQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTErkvwgheLAQQ 477
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE-------IAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 478 GSSLAQNRGKLEAQIESLSRENEC----LRKTNESDSDALRIK------CKIIDDQTETIRKLKDCLQEKDEHIKRLQEK 547
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQpplaLLLSPEDFLDAVRRLqylkylAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 548 ITEIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRK 607
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
507-599 |
2.72e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 507 ESDSDALRIKCKIIDDQTETIRKLKDCLQ----EKDEHIKRLQEKITEIEkctqEQLDEKSSQLDEVLEKLERHNERKEK 582
Cdd:PRK12704 46 EAKKEAEAIKKEALLEAKEEIHKLRNEFEkelrERRNELQKLEKRLLQKE----ENLDRKLELLEKREEELEKKEKELEQ 121
|
90
....*....|....*..
gi 1164778612 583 LKQQLKGKEVELEEIRK 599
Cdd:PRK12704 122 KQQELEKKEEELEELIE 138
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
475-685 |
3.88e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 3.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 475 AQQGSSLAQNRGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKc 554
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 555 tqeQLDEKSSQLDEVLEKLERhNERKEKLKQQLKGKEV-ELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKE 633
Cdd:COG4942 98 ---ELEAQKEELAELLRALYR-LGRQPPLALLLSPEDFlDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1164778612 634 KKLKAERDKsIELQKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQK 685
Cdd:COG4942 174 AELEALLAE-LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
268-622 |
3.91e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 3.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 268 LHREREQAQQLHQLLALKEQEHRKELETREFFTDADFQ------DALAKEIAKEEKKHEQMIKEYQEKIDVLSQqymdLE 341
Cdd:TIGR02169 203 LRREREKAERYQALLKEKREYEGYELLKEKEALERQKEaierqlASLEEELEKLTEEISELEKRLEEIEQLLEE----LN 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 342 NEFRIALTVEARRFQdvkdgfenvaTELAKSKHALIWAQRKENESSSLIKDLtcmvkeqktklaevsklkQETAANLQNQ 421
Cdd:TIGR02169 279 KKIKDLGEEEQLRVK----------EKIGELEAEIASLERSIAEKERELEDA------------------EERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 422 INTLEILIEDDKQksiQIELLKHEKVQLISELAakeslifglrterkvwghelaqqgsSLAQNRGKLEAQIESLSRENEC 501
Cdd:TIGR02169 331 IDKLLAEIEELER---EIEEERKRRDKLTEEYA-------------------------ELKEELEDLRAELEEVDKEFAE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 502 LRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEkctqEQLDEKSSQLDEVLEKLERHNERKE 581
Cdd:TIGR02169 383 TRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIE----AKINELEEEKEDKALEIKKQEWKLE 458
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1164778612 582 KLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQV 622
Cdd:TIGR02169 459 QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
185-436 |
4.99e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 4.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 185 NSKGQLEVMVHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMErqkrqqqaaqiRLIQEVELKASAADREIYLL 264
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA-----------RRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 265 RTSLHREREQAQQLHQLLA--------LKEQEHRKELETREFFTDADFQDALAKEIAKEEKkheQMIKEYQEKIDVLSQQ 336
Cdd:COG4942 89 EKEIAELRAELEAQKEELAellralyrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARR---EQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 337 YMDLENEfrialtvearrfqdvKDGFENVATELAKSKHALiwaQRKENESSSLIKDLTcmvKEQKTKLAEVSKLKQEtAA 416
Cdd:COG4942 166 RAELEAE---------------RAELEALLAELEEERAAL---EALKAERQKLLARLE---KELAELAAELAELQQE-AE 223
|
250 260
....*....|....*....|
gi 1164778612 417 NLQNQINTLEILIEDDKQKS 436
Cdd:COG4942 224 ELEALIARLEAEAAAAAERT 243
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
487-684 |
8.74e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.37 E-value: 8.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 487 KLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKIteiekctqEQLDEKSSQL 566
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAEL--------EELREELEKL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 567 DEVLEKLERHNERKEkLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLEtQVKEVKEKFENKEKKLKAERDKSIEL 646
Cdd:COG4717 122 EKLLQLLPLYQELEA-LEAELAELPERLEELEERLEELRELEEELEELEAELA-ELQEELEELLEQLSLATEEELQDLAE 199
|
170 180 190
....*....|....*....|....*....|....*...
gi 1164778612 647 QKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQ 684
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELE 237
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
310-620 |
9.88e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 39.26 E-value: 9.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 310 KEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFrialtVEARRFQDVKDGFENVATELAKSKHALIWAQRKENESSSL 389
Cdd:TIGR00606 594 AKLNKELASLEQNKNHINNELESKEEQLSSYEDKL-----FDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQF 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 390 IKDLTcmvkEQKTKLAEVSKLKQETAANLQNQINTLE--ILIEDDKQKSIQIELLKHEKVQLI---------SELAAKES 458
Cdd:TIGR00606 669 ITQLT----DENQSCCPVCQRVFQTEAELQEFISDLQskLRLAPDKLKSTESELKKKEKRRDEmlglapgrqSIIDLKEK 744
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 459 LIFGLRTERKVWGHELAQQGSSLAQNRGKLEAQIESLSRENECLR------------KTNESDSDALRIKCKIIDDQtET 526
Cdd:TIGR00606 745 EIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTdvtimerfqmelKDVERKIAQQAAKLQGSDLD-RT 823
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778612 527 IRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQlDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNR 606
Cdd:TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQ-QEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR 902
|
330
....*....|....
gi 1164778612 607 KWHDKGELLCHLET 620
Cdd:TIGR00606 903 EIKDAKEQDSPLET 916
|
|
| |
