|
Name |
Accession |
Description |
Interval |
E-value |
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
18-109 |
4.11e-11 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 63.65 E-value: 4.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 18 LTRLNVSYNHIDDLSGLIPLhgikHKLRYIDLHSNRIDSIHHLLQCMVGLHFLTNLILEkdgdDNPVCRLPGYRAVILQT 97
Cdd:cd21340 122 LRVLNISGNNIDSLEPLAPL----RNLEQLDASNNQISDLEELLDLLSSWPSLRELDLT----GNPVCKKPKYRDKIILA 193
|
90
....*....|..
gi 1164778457 98 LPQLRILDCKNI 109
Cdd:cd21340 194 SKSLEVLDGKEI 205
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
319-937 |
3.63e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 3.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 319 KVDQSHSEDNTYQSLVEQLDQE-REKRWRAEQAENKLMDYIDELHKHANEKedihslallttDRLKEIIFRERNSKGQLE 397
Cdd:TIGR02168 282 EIEELQKELYALANEISRLEQQkQILRERLANLERQLEELEAQLEELESKL-----------DELAEELAELEEKLEELK 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 398 VMVHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLiqEVELKASAADREIYLLRTSLHRE 477
Cdd:TIGR02168 351 EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL--EARLERLEDRRERLQQEIEELLK 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 478 REQAQQLH----QLLALKEQEHRKELETREFFTDADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRIA 553
Cdd:TIGR02168 429 KLEEAELKelqaELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 554 LTVEARRFQ------------DVKDGFENvATELAKSKHA------------LIWAQRKENESS------------SLIK 597
Cdd:TIGR02168 509 KALLKNQSGlsgilgvlseliSVDEGYEA-AIEAALGGRLqavvvenlnaakKAIAFLKQNELGrvtflpldsikgTEIQ 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 598 DLTCMVKEQKTKLAEVSKLKQETAANLQNQINTL--EILIEDDKQKSIQIELLKHEKVQLIS---EL-----------AA 661
Cdd:TIGR02168 588 GNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlgGVLVVDDLDNALELAKKLRPGYRIVTldgDLvrpggvitggsAK 667
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 662 KESLIFGLRTERKVWGHELAQQGSSLA---QNRGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKD 738
Cdd:TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAeleKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 739 CLQEKDEHIKRLQEKITEIEkctqEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHDKG 818
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELE----ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR 823
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 819 ELLCHLETQVKEVKEKFENKEKKLKAERDKSIELQKNaMEKLHSMDDAFKRQVDAIVEAhQAEIAQLANEKQKCIDSANL 898
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE-IEELEELIEELESELEALLNE-RASLEEALALLRSELEELSE 901
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 1164778457 899 KVHQIEKEMREL---LEETCKNKKTMEAKIKQLAFALNEIQQ 937
Cdd:TIGR02168 902 ELRELESKRSELrreLEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
473-813 |
1.08e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 473 SLHREREQAQQLHqllALKEQEhrKELETREFFTDADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRi 552
Cdd:TIGR02168 204 SLERQAEKAERYK---ELKAEL--RELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS- 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 553 altvearrfqdvkdgfenvatELAKSKHAliwAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAANLQNQINTLE 632
Cdd:TIGR02168 278 ---------------------ELEEEIEE---LQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 633 ILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKvwghELAQQGSSLAQNRGKLEAQIESLsreneclrktn 712
Cdd:TIGR02168 334 ELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE----ELEEQLETLRSKVAQLELQIASL----------- 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 713 esdsdalrikckiiddqTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQldekssQLDEVLEKLERHNERKEKLKQQ 792
Cdd:TIGR02168 399 -----------------NNEIERLEARLERLEDRRERLQQEIEELLKKLEEA------ELKELQAELEELEEELEELQEE 455
|
330 340
....*....|....*....|.
gi 1164778457 793 LKGKEVELEEIRKAYSTLNRK 813
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQA 476
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
416-810 |
3.75e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.44 E-value: 3.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 416 KAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAADREIYLLRTSLHREREQA----QQLHQLLA-- 489
Cdd:pfam15921 307 QARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESgnldDQLQKLLAdl 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 490 -LKEQEHRKELETREFFTDADFQ-----DALAKEIAK---EEKKHEQMIKEYQEKIDVLSQQYMDL---ENEFRIALTVE 557
Cdd:pfam15921 387 hKREKELSLEKEQNKRLWDRDTGnsitiDHLRRELDDrnmEVQRLEALLKAMKSECQGQMERQMAAiqgKNESLEKVSSL 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 558 ARRFQDVKDGFENVATELAKSKHALIWAQRKenessslIKDLTCMVKEQKTKL----AEVSKLKQETAANLQnQINTLEi 633
Cdd:pfam15921 467 TAQLESTKEMLRKVVEELTAKKMTLESSERT-------VSDLTASLQEKERAIeatnAEITKLRSRVDLKLQ-ELQHLK- 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 634 lIEDDKQKSIQIELlkhEKVQLisELAAKESLIFGLRTERKVWGHELAQQG---SSLAQNRGKLEAQIESL--------- 701
Cdd:pfam15921 538 -NEGDHLRNVQTEC---EALKL--QMAEKDKVIEILRQQIENMTQLVGQHGrtaGAMQVEKAQLEKEINDRrlelqefki 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 702 --SRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQldekssqldEVLE-- 777
Cdd:pfam15921 612 lkDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDY---------EVLKrn 682
|
410 420 430
....*....|....*....|....*....|....*.
gi 1164778457 778 ---KLERHNERKEKLKQQLKGKEVELEEIRKAYSTL 810
Cdd:pfam15921 683 frnKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSM 718
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
428-806 |
2.00e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 2.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 428 LRTLEKTLEkmerqkrqqqaaqirliqevelkasaadreiyllrtSLHREREQAQQLHQLlalkeQEHRKELETREFFTD 507
Cdd:COG1196 195 LGELERQLE------------------------------------PLERQAEKAERYREL-----KEELKELEAELLLLK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 508 ADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYmdleNEFRIALTVEARRFQDVKDGFENVATELAKSKHALIWAQR 587
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAEL----EELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 588 KENESSSLIKDLtcmvKEQKTKLAEVSKLKQETAANLQNQINTLEILIEDDKQksiQIELLKHEKVQLISELAAKESLIF 667
Cdd:COG1196 310 RRRELEERLEEL----EEELAELEEELEELEEELEELEEELEEAEEELEEAEA---ELAEAEEALLEAEAELAEAEEELE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 668 GLRTERKvwghELAQQGSSLAQNRGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHI 747
Cdd:COG1196 383 ELAEELL----EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1164778457 748 KRLQEKITEiekcTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKA 806
Cdd:COG1196 459 EALLELLAE----LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
385-781 |
3.78e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 3.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 385 IIFRERNSKgQLEVMVHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAAD 464
Cdd:TIGR02168 672 ILERRREIE-ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 465 ReiyllrtsLHREREQAQQLHQLLALKEQEHRKELetrefftdadfqdalaKEIAKEEKKHEQMIKEYQEKIDVLSQQYM 544
Cdd:TIGR02168 751 Q--------LSKELTELEAEIEELEERLEEAEEEL----------------AEAEAEIEELEAQIEQLKEELKALREALD 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 545 DLENEfriaLTVEARRFQDVKDGFENVATELAkskhaliwaqrkenessslikdltcMVKEQKTKLAEVSKLKQETAANL 624
Cdd:TIGR02168 807 ELRAE----LTLLNEEAANLRERLESLERRIA-------------------------ATERRLEDLEEQIEELSEDIESL 857
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 625 QNQINTLEILIEddkQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKVWG---HELAQQGSSLAQNRGKLEAQIESL 701
Cdd:TIGR02168 858 AAEIEELEELIE---ELESELEALLNERASLEEALALLRSELEELSEELRELEskrSELRRELEELREKLAQLELRLEGL 934
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 702 -SRENECLRKTNESDSDALrikckiiDDQTETIRKLKDCLQEKDEHIKRLQEKITEI-------------EKCTQEQLDE 767
Cdd:TIGR02168 935 eVRIDNLQERLSEEYSLTL-------EEAEALENKIEDDEEEARRRLKRLENKIKELgpvnlaaieeyeeLKERYDFLTA 1007
|
410
....*....|....
gi 1164778457 768 KSSQLDEVLEKLER 781
Cdd:TIGR02168 1008 QKEDLTEAKETLEE 1021
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
335-804 |
5.40e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.51 E-value: 5.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 335 EQLDQEREKRWRAEQAE-----NKLMDYIDELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKGQLEVmvhkLQNEIKK 409
Cdd:PRK02224 187 GSLDQLKAQIEEKEEKDlherlNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELET----LEAEIED 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 410 LTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQqqaaqirLIQEVELKaSAADREIYLLRTSLHREREQAQQLHQLLA 489
Cdd:PRK02224 263 LRETIAETEREREELAEEVRDLRERLEELEEERDD-------LLAEAGLD-DADAEAVEARREELEDRDEELRDRLEECR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 490 LKEQEHRKELET-REfftDADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRIAltveARRFQDVKDGF 568
Cdd:PRK02224 335 VAAQAHNEEAESlRE---DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL----RERFGDAPVDL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 569 ENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEvSKLKQ-----------ETAANLQNQINTLEILIED 637
Cdd:PRK02224 408 GNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEA-GKCPEcgqpvegsphvETIEEDRERVEELEAELED 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 638 DKQKSIQIEllkhEKVQLISELAAKESLIFGLRTERKVWGHELAQQGSSLAQNRGKLE------AQIESLSRENECLRKT 711
Cdd:PRK02224 487 LEEEVEEVE----ERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEelreraAELEAEAEEKREAAAE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 712 NESDSDALRIKCKIID----------DQTETIRKLKDCLQEKDEHIKRLQEK---ITEIEKCTQEQLDEKSSQ------- 771
Cdd:PRK02224 563 AEEEAEEAREEVAELNsklaelkeriESLERIRTLLAAIADAEDEIERLREKreaLAELNDERRERLAEKRERkreleae 642
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 1164778457 772 -------------------LDEVLEKLERHNERKEKLKQQLKGKEVELEEIR 804
Cdd:PRK02224 643 fdearieearedkeraeeyLEQVEEKLDELREERDDLQAEIGAVENELEELE 694
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
641-937 |
6.50e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 6.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 641 KSIQIELLKHEKVQLISELAAKESLIFGLRTERKvwghelaqqgsslaqnrgKLEAQIESLSRENECLRKTNESDSDALR 720
Cdd:TIGR02168 223 RELELALLVLRLEELREELEELQEELKEAEEELE------------------ELTAELQELEEKLEELRLEVSELEEEIE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 721 IKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEkctqEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVEL 800
Cdd:TIGR02168 285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELE----AQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 801 EEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKEKKLKAERDKSIELQKNAMEKLHSMDDAFKRQVDAIVEAHQA 880
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA 440
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 881 EIA---QLANEKQKCIDSANLKVHQIEKEMRELLEETCKNKKTmEAKIKQLAFALNEIQQ 937
Cdd:TIGR02168 441 ELEeleEELEELQEELERLEEALEELREELEEAEQALDAAERE-LAQLQARLDSLERLQE 499
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
457-793 |
7.77e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 7.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 457 ELKASAADREIYLLRTSLHREREQAQQLHQLLALKEQEHrkeletrefftdadfqDALAKEIAKEEKKHEQMIKEYQEki 536
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEEL----------------EELTAELQELEEKLEELRLEVSE-- 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 537 dvlsqqymdLENEFRIaltvearrfqdvkdgfenvatelakskhaliwAQRKENESSSLIKDLTCMVKEQKTKLAEVSKL 616
Cdd:TIGR02168 279 ---------LEEEIEE--------------------------------LQKELYALANEISRLEQQKQILRERLANLERQ 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 617 KQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIF----GLRTERKVWG------HELAQQGSS 686
Cdd:TIGR02168 318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEelesRLEELEEQLEtlrskvAQLELQIAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 687 LAQNRGKLEAQIESLSRENECLRKTNESDSDAL-RIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKIteiekctQEQL 765
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALEEL-------REEL 470
|
330 340
....*....|....*....|....*...
gi 1164778457 766 DEKSSQLDEVLEKLERHNERKEKLKQQL 793
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLDSLERLQ 498
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
338-934 |
9.66e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 9.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 338 DQEREKRWRAEQAENKLMDYIDELHKHANEKEDihslallttdrLKEIIFRERNSKGQLEVMVHKLQNEIKKLTVELmka 417
Cdd:TIGR02169 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEE-----------LEREIEEERKRRDKLTEEYAELKEELEDLRAEL--- 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 418 kdqQEDHLKHLRTLEKTlekmerqkrqqqaaqirliQEVELKASAADREIYLLRTSLHREREQAQQLHQLLA-LKEQEHR 496
Cdd:TIGR02169 374 ---EEVDKEFAETRDEL-------------------KDYREKLEKLKREINELKRELDRLQEELQRLSEELAdLNAAIAG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 497 KELETREFftdadfqDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRialtvearrfqDVKDGFENVATELA 576
Cdd:TIGR02169 432 IEAKINEL-------EEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD-----------RVEKELSKLQRELA 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 577 KSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAANLQ----NQINTleILIEDDKQKSIQIELLKHEK 652
Cdd:TIGR02169 494 EAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEvaagNRLNN--VVVEDDAVAKEAIELLKRRK 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 653 ------------------VQLISELAAKESLIFGLRTERK-------VWGHELAQQGSSLAQnrgKLEAQIESLSRENEC 707
Cdd:TIGR02169 572 agratflplnkmrderrdLSILSEDGVIGFAVDLVEFDPKyepafkyVFGDTLVVEDIEAAR---RLMGKYRMVTLEGEL 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 708 L------------RKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIK-RLQEKITEIEKCTQEqLDEKSSQLDE 774
Cdd:TIGR02169 649 FeksgamtggsraPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIEnRLDELSQELSDASRK-IGEIEKEIEQ 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 775 VLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENkekklkaERDKSIELQK 854
Cdd:TIGR02169 728 LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH-------SRIPEIQAEL 800
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 855 NAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQKCIDSANLKVHQIeKEMRELLEETCKNKKTMEAKIKQLAFALNE 934
Cdd:TIGR02169 801 SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI-KSIEKEIENLNGKKEELEEELEELEAALRD 879
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
348-918 |
1.15e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.81 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 348 EQAENKLMDY---IDELHKHANEKEDIHS----------------LALLTTDRLKEIIFRERNSKGQlevmvHKLQNEIK 408
Cdd:pfam15921 74 EHIERVLEEYshqVKDLQRRLNESNELHEkqkfylrqsvidlqtkLQEMQMERDAMADIRRRESQSQ-----EDLRNQLQ 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 409 KLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVElkaSAADREIYllrtslhrEREQAQQLH-QL 487
Cdd:pfam15921 149 NTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFE---EASGKKIY--------EHDSMSTMHfRS 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 488 LALKEQEHRKELETREFFtdadfqdaLAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDL------ENEFRI-ALTVEARR 560
Cdd:pfam15921 218 LGSAISKILRELDTEISY--------LKGRIFPVEDQLEALKSESQNKIELLLQQHQDRieqlisEHEVEItGLTEKASS 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 561 FQDVKDGFEN---VATELAKSKHALIWAQRKENESS--------------------SLIKDLTCMVKEQKTKLAEVSKLK 617
Cdd:pfam15921 290 ARSQANSIQSqleIIQEQARNQNSMYMRQLSDLESTvsqlrselreakrmyedkieELEKQLVLANSELTEARTERDQFS 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 618 QETaANLQNQintLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKVWGHELAQQGSSL----AQNRGK 693
Cdd:pfam15921 370 QES-GNLDDQ---LQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLkamkSECQGQ 445
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 694 LEAQIESLSRENECLRKTN------ESDSDALR-------IKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKC 760
Cdd:pfam15921 446 MERQMAAIQGKNESLEKVSsltaqlESTKEMLRkvveeltAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSR 525
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 761 TQEQLDEkSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLnrkwhdkgellchleTQVKEVKEKFENKEK 840
Cdd:pfam15921 526 VDLKLQE-LQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENM---------------TQLVGQHGRTAGAMQ 589
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 841 KLKAERDKSIELQKNAMEKLHSMDDafkrQVDAIVEAHQAEIAQLANEKQKCIDSANLK---VHQIEKEMRELLEE--TC 915
Cdd:pfam15921 590 VEKAQLEKEINDRRLELQEFKILKD----KKDAKIRELEARVSDLELEKVKLVNAGSERlraVKDIKQERDQLLNEvkTS 665
|
...
gi 1164778457 916 KNK 918
Cdd:pfam15921 666 RNE 668
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
330-937 |
1.31e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 1.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 330 YQSLVEQLDQEREKRWRAEQAENKLMDYIDELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKGQLEVMVHKLQNEIKK 409
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 410 LTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAqirlIQEVELKASAADREIYLLRTSLHREREQAQQLHQLLA 489
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE----LESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 490 LKEQE---HRKELETrefftdadfQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLE-NEFRIALTVEARRFQDVK 565
Cdd:TIGR02168 390 QLELQiasLNNEIER---------LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 566 DGFENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQEtAANLQNQINTLEILIEDDKQKSIQI 645
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN-QSGLSGILGVLSELISVDEGYEAAI 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 646 ELLKHEKVQ--LISELAAKESLIFGLRTERKVWGHELAQQGSSLAQNRGKLEaqiESLSRENECLRKTNESDSDALRIK- 722
Cdd:TIGR02168 540 EAALGGRLQavVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDR---EILKNIEGFLGVAKDLVKFDPKLRk 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 723 --------CKIIDDQTETIRKLKDCLQE-----KDEHIKRLQEKITEIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKL 789
Cdd:TIGR02168 617 alsyllggVLVVDDLDNALELAKKLRPGyrivtLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAEL 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 790 KQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKEKKLKAERDKSIELQKNAM---EKLHSMDDA 866
Cdd:TIGR02168 697 EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEeleERLEEAEEE 776
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1164778457 867 FKRQVDAIVEAhQAEIAQLANEKQ---KCIDSANLKVHQIEKEMRELLEETCKNKKTMEAKIKQLAFALNEIQQ 937
Cdd:TIGR02168 777 LAEAEAEIEEL-EAQIEQLKEELKalrEALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
326-914 |
2.36e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 2.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 326 EDNTYQSLVEQLDQEREKRWRAEQAENKLMDYIDELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKGQLEVMVHKLQN 405
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 406 EIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAADREIYLLRTSLHREREQAQQLH 485
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 486 QLLALKEQEHRKELETREFFTDADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQyMDLENEFRIALTVEARRFQDVK 565
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA-LLELLAELLEEAALLEAALAEL 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 566 DGFENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVS-KLKQETAANLQNQINTLEILIEDDKQKSIQ 644
Cdd:COG1196 483 LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGvEAAYEAALEAALAAALQNIVVEDDEVAAAA 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 645 IELLKHEK--------VQLISELAAKESLIFGLRTERKVWGHE-LAQQGSSLAQNRGKLEAQIESLSRENECLRKTNESD 715
Cdd:COG1196 563 IEYLKAAKagratflpLDKIRARAALAAALARGAIGAAVDLVAsDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTL 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 716 SDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKG 795
Cdd:COG1196 643 AGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 796 KEVELEEIRKAYSTLNRKWHDKGELLchletqvkevkekfeNKEKKLKAERDKSIELQKNAMEKLhsmddafKRQVD--- 872
Cdd:COG1196 723 EEALEEQLEAEREELLEELLEEEELL---------------EEEALEELPEPPDLEELERELERL-------EREIEalg 780
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 1164778457 873 -----AIVEAHQAE---------IAQLANEKQKcIDSAnlkVHQIEKEMRELLEET 914
Cdd:COG1196 781 pvnllAIEEYEELEerydflseqREDLEEARET-LEEA---IEEIDRETRERFLET 832
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
462-804 |
2.56e-06 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 51.05 E-value: 2.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 462 AADREIYLLRTSLHREREQAQQLHQLLALKEQEHRKEL-ETREFFTD--------ADFQDALAKE---IAKEEKKHEQMI 529
Cdd:pfam07888 52 AANRQREKEKERYKRDREQWERQRRELESRVAELKEELrQSREKHEEleekykelSASSEELSEEkdaLLAQRAAHEARI 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 530 KEYQEKIDVLSQQYMDLENEFRialtveaRRFQDVKDGFENVATELAKSKHALIWAQRKENESSSLIKDLtcmvKEQKTK 609
Cdd:pfam07888 132 RELEEDIKTLTQRVLERETELE-------RMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEF----QELRNS 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 610 LAEvsklKQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKVWGH----------- 678
Cdd:pfam07888 201 LAQ----RDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAqrdrtqaelhq 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 679 ---ELAQQGSSLAQNRGKLEAQIESLSRENECLRKTNESDSDalrikckiiddqteTIRKLKDCLQEKDEhikRLQEKIT 755
Cdd:pfam07888 277 arlQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKD--------------RIEKLSAELQRLEE---RLQEERM 339
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1164778457 756 EIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIR 804
Cdd:pfam07888 340 EREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQ 388
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
516-927 |
3.07e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 3.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 516 KEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEfriaLTVEARRFQDVKDGFENVATELAKSKHALIwaqRKENESSSL 595
Cdd:TIGR04523 57 KNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDK----LKKNKDKINKLNSDLSKINSEIKNDKEQKN---KLEVELNKL 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 596 IKDLTCMVKEQKTKLAEVSKLKQEtAANLQNQINTLEILIEDdkqksiqielLKHEKVQLISELAAKESLIFGLRTERKV 675
Cdd:TIGR04523 130 EKQKKENKKNIDKFLTEIKKKEKE-LEKLNNKYNDLKKQKEE----------LENELNLLEKEKLNIQKNIDKIKNKLLK 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 676 WGHELAQQGSSLAQNRgKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDdqtETIRKLKDCLQEKDEHIKRLQEKIT 755
Cdd:TIGR04523 199 LELLLSNLKKKIQKNK-SLESQISELKKQNNQLKDNIEKKQQEINEKTTEIS---NTQTQLNQLKDEQNKIKKQLSEKQK 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 756 EIEKcTQEQLDEKSSQLDEVLEKLERHNERKE-----KLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKE 830
Cdd:TIGR04523 275 ELEQ-NNKKIKELEKQLNQLKSEISDLNNQKEqdwnkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTN 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 831 VKEKFEnkekklkaERDKSIELQKNAMEKLHSMDDAFKRQVD------AIVEAHQAEIAQLANEKQKCIDSANLKVHQIE 904
Cdd:TIGR04523 354 SESENS--------EKQRELEEKQNEIEKLKKENQSYKQEIKnlesqiNDLESKIQNQEKLNQQKDEQIKKLQQEKELLE 425
|
410 420
....*....|....*....|...
gi 1164778457 905 KEMRELLEETCKNKKTMEAKIKQ 927
Cdd:TIGR04523 426 KEIERLKETIIKNNSEIKDLTNQ 448
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
334-939 |
8.15e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 8.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 334 VEQLDQEREK--RWRAEQAENKLMD---YIDELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKGQLEvmvhKLQNEIK 408
Cdd:COG1196 202 LEPLERQAEKaeRYRELKEELKELEaelLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE----ELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 409 KLTVELmkaKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAADREIYLLRTSLHREREQAQQLHQLL 488
Cdd:COG1196 278 ELELEL---EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 489 ALKEQEHRKELETREFFTDADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRIALTVEARRFQDVKDGF 568
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 569 ENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQEtAANLQNQINTLEILIEDDKQKSIQIELL 648
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE-LAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 649 KHEKVQLISELAAKESLIFGLRTERKVWGHELAQQGSSLAQNRGKLEAQIESLSRENEcLRKTNESdsdalrikckiidd 728
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKA-GRATFLP-------------- 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 729 qtetIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYS 808
Cdd:COG1196 579 ----LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 809 TLNRKwhdkgellcHLETQVKEVKEKFENKEKKLKAERDKSIELQKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANE 888
Cdd:COG1196 655 GGSAG---------GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA 725
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 1164778457 889 KQKCIDSANLKVHQIEKEMRELLEETCKNKKTMEAKIKQLAFALNEIQQDM 939
Cdd:COG1196 726 LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
334-816 |
8.69e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 8.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 334 VEQLDQEREKRWRAEQAENKLmDYIDELHKHANEKEDIHSLALLTT--DRLKEIIFRERNSKGQLEVMVHKLQNEIKKLT 411
Cdd:COG4913 251 IELLEPIRELAERYAAARERL-AELEYLRAALRLWFAQRRLELLEAelEELRAELARLEAELERLEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 412 VELMKAKDQQEDHLKH-LRTLEKTLEKMERQKRQQQAAQIRLiqEVELKASAAD-----REIYLLRTSLHREREQAQQLH 485
Cdd:COG4913 330 AQIRGNGGDRLEQLEReIERLERELEERERRRARLEALLAAL--GLPLPASAEEfaalrAEAAALLEALEEELEALEEAL 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 486 QLLALKEQEHRKELetrefftdadfqDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQ-------------YMDLENE--- 549
Cdd:COG4913 408 AEAEAALRDLRREL------------RELEAEIASLERRKSNIPARLLALRDALAEAlgldeaelpfvgeLIEVRPEeer 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 550 -----------FRIALTVEARRFQDVKDGFENVATELA----KSKHALIWAQRKENESSSLIKDLTcmVKEQ------KT 608
Cdd:COG4913 476 wrgaiervlggFALTLLVPPEHYAAALRWVNRLHLRGRlvyeRVRTGLPDPERPRLDPDSLAGKLD--FKPHpfrawlEA 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 609 KLAEVSKLKQ-ETAANLQN---------QINTLEILIEDDKQKSI------------QIELLKHEKVQLISELAAKESLI 666
Cdd:COG4913 554 ELGRRFDYVCvDSPEELRRhpraitragQVKGNGTRHEKDDRRRIrsryvlgfdnraKLAALEAELAELEEELAEAEERL 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 667 FGLRTERKvwghELAQQGSSLAQ---------NRGKLEAQIESLSRENECLRKTN-------------ESDSDALRikcK 724
Cdd:COG4913 634 EALEAELD----ALQERREALQRlaeyswdeiDVASAEREIAELEAELERLDASSddlaaleeqleelEAELEELE---E 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 725 IIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKC----TQEQLDEKSSQL--DEVLEKLERH-NERKEKLKQQLKGKE 797
Cdd:COG4913 707 ELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLarleLRALLEERFAAAlgDAVERELRENlEERIDALRARLNRAE 786
|
570
....*....|....*....
gi 1164778457 798 VELEEIRKAYstlNRKWHD 816
Cdd:COG4913 787 EELERAMRAF---NREWPA 802
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
604-806 |
1.41e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.29 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 604 KEQKTKLAEVSKLKQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKVWGHELAQQ 683
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 684 GSSLaqnrGKLEAQIESlsreneclrktnESDSDAL-RIK--CKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKC 760
Cdd:COG3883 99 GGSV----SYLDVLLGS------------ESFSDFLdRLSalSKIADADADLLEELKADKAELEAKKAELEAKLAELEAL 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1164778457 761 TQEQLDEKS---SQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKA 806
Cdd:COG3883 163 KAELEAAKAeleAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
401-939 |
1.66e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 401 HKLQNEIKKLTVELmkAKDQQEDHLKHLRTLEKTLEKMERQKRQQQaaqiRLIQEVELKASAADREIYLLRTSLHREREQ 480
Cdd:TIGR02168 216 KELKAELRELELAL--LVLRLEELREELEELQEELKEAEEELEELT----AELQELEEKLEELRLEVSELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 481 AQQLHQLLALKEQ------EHRKELETREFFTDADFQDALAKEIAKEEKKHEQmikeyQEKIDVLSQQYMDLEN---EFR 551
Cdd:TIGR02168 290 LYALANEISRLEQqkqilrERLANLERQLEELEAQLEELESKLDELAEELAEL-----EEKLEELKEELESLEAeleELE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 552 IALTVEARRFQDVKDGFENVATELAKSKH--ALIWAQRKENEssSLIKDLTCMVKEQKTKLAEVSKLKQETAAN-LQNQI 628
Cdd:TIGR02168 365 AELEELESRLEELEEQLETLRSKVAQLELqiASLNNEIERLE--ARLERLEDRRERLQQEIEELLKKLEEAELKeLQAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 629 NTLEILIED-----------DKQKSIQIELLKHEKVQLISELAAKESLIFGL-----------RTERKVWGHELAQQG-- 684
Cdd:TIGR02168 443 EELEEELEElqeelerleeaLEELREELEEAEQALDAAERELAQLQARLDSLerlqenlegfsEGVKALLKNQSGLSGil 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 685 ----------------------------------------SSLAQNR-GKL--------------EAQIESLSRENECLR 709
Cdd:TIGR02168 523 gvlselisvdegyeaaieaalggrlqavvvenlnaakkaiAFLKQNElGRVtflpldsikgteiqGNDREILKNIEGFLG 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 710 KTNESDSDALRIK---------CKIIDDQTETIRKLKD------------------------------CLQEKDEHIKRL 750
Cdd:TIGR02168 603 VAKDLVKFDPKLRkalsyllggVLVVDDLDNALELAKKlrpgyrivtldgdlvrpggvitggsaktnsSILERRREIEEL 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 751 QEKITEIEkctqEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKE 830
Cdd:TIGR02168 683 EEKIEELE----EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 831 VKEKFENKEKKLKAERDKSIELQKNaMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQKcIDSANLKVHQIEKEMREL 910
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAE-IEELEAQIEQLKEELKALREALDELRAELTLLNEE-AANLRERLESLERRIAAT 836
|
650 660 670
....*....|....*....|....*....|..
gi 1164778457 911 ---LEETCKNKKTMEAKIKQLAFALNEIQQDM 939
Cdd:TIGR02168 837 errLEDLEEQIEELSEDIESLAAEIEELEELI 868
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
693-911 |
3.02e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 3.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 693 KLEAQIESLSRenecLRKTNEsDSDALRIKCKIIDD---------QTETIRKLKDCLQEKDEHIKRLQEKITEIEkctqE 763
Cdd:COG4913 246 DAREQIELLEP----IRELAE-RYAAARERLAELEYlraalrlwfAQRRLELLEAELEELRAELARLEAELERLE----A 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 764 QLDEKSSQLDEVLEKLERH-NERKEKLKQQLKGKEVELEEIRKAYSTLNrkwhdkgELLCHLETQVKEVKEKFENKEKKL 842
Cdd:COG4913 317 RLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLE-------ALLAALGLPLPASAEEFAALRAEA 389
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1164778457 843 KAERDKSIELQKNAMEKLHSMDDAFKRQVDAIvEAHQAEIAQLANeKQKCIDSanlKVHQIEKEMRELL 911
Cdd:COG4913 390 AALLEALEEELEALEEALAEAEAALRDLRREL-RELEAEIASLER-RKSNIPA---RLLALRDALAEAL 453
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
744-938 |
3.55e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 3.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 744 DEHIKRLQEKITEIekctQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLch 823
Cdd:COG3883 15 DPQIQAKQKELSEL----QAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL-- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 824 letqvkevkekfenkekklkAERDKSIELQKNAMEKL------HSMDDAFKRQ--VDAIVEAHQAEIAQLANEKQKcIDS 895
Cdd:COG3883 89 --------------------GERARALYRSGGSVSYLdvllgsESFSDFLDRLsaLSKIADADADLLEELKADKAE-LEA 147
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1164778457 896 ANLKVHQIEKEMRELLEETCKNKKTMEAKIKQLAFALNEIQQD 938
Cdd:COG3883 148 KKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAE 190
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
611-813 |
4.05e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 4.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 611 AEVSKLKQETAANLQNQINTLEILIEDDKQksiQIELLKHEKVQLISELAAKESLIFGLRTERKVWGHELAQQGSSLAQN 690
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKK---EEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 691 RGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKcTQEQLDEKSS 770
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAA-LRAELEAERA 174
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1164778457 771 QLDEVLEKLErhnERKEKLKQQLKGKEVELEEIRKAYSTLNRK 813
Cdd:COG4942 175 ELEALLAELE---EERAALEALKAERQKLLARLEKELAELAAE 214
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
474-828 |
5.48e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 5.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 474 LHREREQAQQLHQLLALKEQEHRKELETREFFTDADFQ------DALAKEIAKEEKKHEQMIKEYQEKIDVLSQqymdLE 547
Cdd:TIGR02169 203 LRREREKAERYQALLKEKREYEGYELLKEKEALERQKEaierqlASLEEELEKLTEEISELEKRLEEIEQLLEE----LN 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 548 NEFRIALTVEARRFQdvkdgfenvaTELAKSKHALIWAQRKENESSSLIKDLtcmvkeqktklaevsklkQETAANLQNQ 627
Cdd:TIGR02169 279 KKIKDLGEEEQLRVK----------EKIGELEAEIASLERSIAEKERELEDA------------------EERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 628 INTLEILIEDDKQksiQIELLKHEKVQLISELAakeslifglrterkvwghelaqqgsSLAQNRGKLEAQIESLSRENEC 707
Cdd:TIGR02169 331 IDKLLAEIEELER---EIEEERKRRDKLTEEYA-------------------------ELKEELEDLRAELEEVDKEFAE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 708 LRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEkctqEQLDEKSSQLDEVLEKLERHNERKE 787
Cdd:TIGR02169 383 TRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIE----AKINELEEEKEDKALEIKKQEWKLE 458
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1164778457 788 KLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQV 828
Cdd:TIGR02169 459 QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
478-716 |
6.21e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 6.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 478 REQAQQLHQLLAlKEQEHRKELETrefftdadfQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRIALTVE 557
Cdd:COG4942 23 AEAEAELEQLQQ-EIAELEKELAA---------LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 558 ARRFQDVKDGFENVATELAK-------SKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAAN---LQNQ 627
Cdd:COG4942 93 AELRAELEAQKEELAELLRAlyrlgrqPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALraeLEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 628 INTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESlifglrterkvwghELAQQGSSLAQNRGKLEAQIESLSRENEC 707
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELA--------------ELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*....
gi 1164778457 708 LRKTNESDS 716
Cdd:COG4942 239 AAERTPAAG 247
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
381-931 |
9.37e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 9.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 381 RLKEIIFRERNSKGQLEvMVHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEV-ELK 459
Cdd:PRK03918 208 EINEISSELPELREELE-KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVkELK 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 460 ASAADREIYLLRTSLHREREQAQQLHQLLALKEQEHRKELEtrefftdadfqdalaKEIAKEEKKHEQmIKEYQEKIDVL 539
Cdd:PRK03918 287 ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIE---------------ERIKELEEKEER-LEELKKKLKEL 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 540 SQQYMDLENEFRI-----ALTVEARRFQDVKDGF--ENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAE 612
Cdd:PRK03918 351 EKRLEELEERHELyeeakAKKEELERLKKRLTGLtpEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEE 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 613 VSKLK-----------QETAANLQNQInTLEIL-IEDDKQKSI-QIELLKHEKVQLISELAaKESLIFGLRterkvwghE 679
Cdd:PRK03918 431 LKKAKgkcpvcgreltEEHRKELLEEY-TAELKrIEKELKEIEeKERKLRKELRELEKVLK-KESELIKLK--------E 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 680 LAQQGSSLAQNRGKLEaqIESLSRENECLRKTNEsDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEK 759
Cdd:PRK03918 501 LAEQLKELEEKLKKYN--LEELEKKAEEYEKLKE-KLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLK 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 760 CTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNrkwhDKGELLCHLETQVKEVKEKFENKE 839
Cdd:PRK03918 578 ELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELD----KAFEELAETEKRLEELRKELEELE 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 840 KKLKAERDKSIELQKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQKcIDSANLKVHQIEKeMRELLEETCKNKK 919
Cdd:PRK03918 654 KKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE-REKAKKELEKLEK-ALERVEELREKVK 731
|
570
....*....|..
gi 1164778457 920 TMEAKIKQLAFA 931
Cdd:PRK03918 732 KYKALLKERALS 743
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
12-236 |
1.01e-04 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 45.69 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 12 LEELINLTRLNVSYNHIDDLSGliPLHGIKhKLRYIDLHSNRIDSIHHLLQcmvGLHFLTNLILekdgDDNPVCRLPGyr 91
Cdd:COG4886 178 LGNLTNLKELDLSNNQITDLPE--PLGNLT-NLEELDLSGNQLTDLPEPLA---NLTNLETLDL----SNNQLTDLPE-- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 92 aviLQTLPQLRILDCKN-------IFGEPVNLTEINSS-------QLQCLEGLLDNLVSSDSPLNISEDEIIDRMPVITA 157
Cdd:COG4886 246 ---LGNLTNLEELDLSNnqltdlpPLANLTNLKTLDLSnnqltdlKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTT 322
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1164778457 158 PIDELVPLEQFASTPSDAVLTSFMSVCQSSEPEKNNHENDLQNEIKLQKLDDQILQLLNETSNSIDNVLEKDPRPKRDT 236
Cdd:COG4886 323 LLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVL 401
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
201-792 |
1.17e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 201 EIKLQKLDDQILQLLNETSNSIDNVLEKDPRPKRDTD-ITSESDYGNRKECNRKVPRRSKIPYDAKTIQTIKhhnknynS 279
Cdd:pfam15921 259 ELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANsIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLR-------S 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 280 FVSCNRKMKPPYLKELYVSSSLANcpmlQESEKPKTEIIKVDQ-SHSEDNTYQSLVEQLdQEREKRWRAEQAENK-LMD- 356
Cdd:pfam15921 332 ELREAKRMYEDKIEELEKQLVLAN----SELTEARTERDQFSQeSGNLDDQLQKLLADL-HKREKELSLEKEQNKrLWDr 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 357 ------YIDELHKHANEKEdihslalLTTDRLKEIIFRERNS-KGQLEVMVHKLQ------NEIKKLTVELMKAKDQQED 423
Cdd:pfam15921 407 dtgnsiTIDHLRRELDDRN-------MEVQRLEALLKAMKSEcQGQMERQMAAIQgkneslEKVSSLTAQLESTKEMLRK 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 424 HLKHLRTLEKTLEKMERQKRQQQAAqirlIQEVELKASAADREIYLLRTSLHREREQAQQLHQllalkEQEHRKELETRe 503
Cdd:pfam15921 480 VVEELTAKKMTLESSERTVSDLTAS----LQEKERAIEATNAEITKLRSRVDLKLQELQHLKN-----EGDHLRNVQTE- 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 504 fftdadfQDALAKEIAKEEKKHE----------QMIKEYQEKIDVLSQQYMDLENEFRiALTVEARRFQDVKDGFENVAT 573
Cdd:pfam15921 550 -------CEALKLQMAEKDKVIEilrqqienmtQLVGQHGRTAGAMQVEKAQLEKEIN-DRRLELQEFKILKDKKDAKIR 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 574 ELakskhaliwaqrkENESSSLIKDLTCMVKEQKTKLAEVSKLKQE------TAANLQNQINTL----EILIEDDKQKSI 643
Cdd:pfam15921 622 EL-------------EARVSDLELEKVKLVNAGSERLRAVKDIKQErdqllnEVKTSRNELNSLsedyEVLKRNFRNKSE 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 644 QIELLKHE-KVQLISELAAKESLIFGLRTERKVWGHELAQQGSSLAQNRGKlEAQIESLSRENECLRktnESDSDALRIK 722
Cdd:pfam15921 689 EMETTTNKlKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAK-RGQIDALQSKIQFLE---EAMTNANKEK 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 723 CKIIDDQTETIRKLKDCLQEKDE----------HIKRLQEKITEIEKCtqeqLDEKSSQLDEVLEKLERHNERKEKLKQQ 792
Cdd:pfam15921 765 HFLKEEKNKLSQELSTVATEKNKmagelevlrsQERRLKEKVANMEVA----LDKASLQFAECQDIIQRQEQESVRLKLQ 840
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
516-826 |
1.64e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.81 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 516 KEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFrialtVEARRFQDVKDGFENVATELAKSKHALIWAQRKENESSSL 595
Cdd:TIGR00606 594 AKLNKELASLEQNKNHINNELESKEEQLSSYEDKL-----FDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQF 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 596 IKDLTcmvkEQKTKLAEVSKLKQETAANLQNQINTLE--ILIEDDKQKSIQIELLKHEKVQLI---------SELAAKES 664
Cdd:TIGR00606 669 ITQLT----DENQSCCPVCQRVFQTEAELQEFISDLQskLRLAPDKLKSTESELKKKEKRRDEmlglapgrqSIIDLKEK 744
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 665 LIFGLRTERKVWGHELAQQGSSLAQNRGKLEAQIESLSRENECLR------------KTNESDSDALRIKCKIIDDQtET 732
Cdd:TIGR00606 745 EIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTdvtimerfqmelKDVERKIAQQAAKLQGSDLD-RT 823
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 733 IRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQlDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNR 812
Cdd:TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQ-QEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR 902
|
330
....*....|....
gi 1164778457 813 KWHDKGELLCHLET 826
Cdd:TIGR00606 903 EIKDAKEQDSPLET 916
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
401-819 |
2.15e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 401 HKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAqiRLIQEVELKASAADREIYLLRTSLHREREQ 480
Cdd:COG4717 91 AELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALE--AELAELPERLEELEERLEELRELEEELEEL 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 481 AQQLHQLlalkEQEHRKELETREFFTDADFQDALAK--EIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRIALTVEA 558
Cdd:COG4717 169 EAELAEL----QEELEELLEQLSLATEEELQDLAEEleELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEER 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 559 RRFQDVKDGFENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAANLQNQINTLEILIEDD 638
Cdd:COG4717 245 LKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEEL 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 639 KQKsiqIELLKHEKVQLISELAAKESLIFGLRTERKVWGHELAQQGsslaqnrgkLEAQIESLsrenecLRKTNESDSDA 718
Cdd:COG4717 325 LAA---LGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEE---------LEQEIAAL------LAEAGVEDEEE 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 719 LRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCT-QEQLDEKSSQLDEVLEKLERHNERKEKLKQQLK--G 795
Cdd:COG4717 387 LRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEElEEELEELEEELEELEEELEELREELAELEAELEqlE 466
|
410 420
....*....|....*....|....
gi 1164778457 796 KEVELEEIRKAYSTLNRKWHDKGE 819
Cdd:COG4717 467 EDGELAELLQELEELKAELRELAE 490
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
762-939 |
2.41e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 762 QEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKEKK 841
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 842 LKAERDKsIELQKNAMEKLH------------SMDDAFKRQ--VDAIVEAHQAEIAQLANEKQKcIDSANLKVHQIEKEM 907
Cdd:COG4942 99 LEAQKEE-LAELLRALYRLGrqpplalllspeDFLDAVRRLqyLKYLAPARREQAEELRADLAE-LAALRAELEAERAEL 176
|
170 180 190
....*....|....*....|....*....|..
gi 1164778457 908 RELLEETCKNKKTMEAKIKQLAFALNEIQQDM 939
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKEL 208
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
391-642 |
2.57e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 2.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 391 NSKGQLEVMVHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMErqkrqqqaaqiRLIQEVELKASAADREIYLL 470
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA-----------RRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 471 RTSLHREREQAQQLHQLLA--------LKEQEHRKELETREFFTDADFQDALAKEIAKEEKkheQMIKEYQEKIDVLSQQ 542
Cdd:COG4942 89 EKEIAELRAELEAQKEELAellralyrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARR---EQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 543 YMDLENEfrialtvearrfqdvKDGFENVATELAKSKHALiwaQRKENESSSLIKDLTcmvKEQKTKLAEVSKLKQEtAA 622
Cdd:COG4942 166 RAELEAE---------------RAELEALLAELEEERAAL---EALKAERQKLLARLE---KELAELAAELAELQQE-AE 223
|
250 260
....*....|....*....|
gi 1164778457 623 NLQNQINTLEILIEDDKQKS 642
Cdd:COG4942 224 ELEALIARLEAEAAAAAERT 243
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
604-813 |
2.66e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 2.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 604 KEQKTKLAEVSKLKQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTErkvwgheLAQQ 683
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE-------IAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 684 GSSLAQNRGKLEAQIESLSRENEC----LRKTNESDSDALRIK------CKIIDDQTETIRKLKDCLQEKDEHIKRLQEK 753
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQpplaLLLSPEDFLDAVRRLqylkylAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 754 ITEIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRK 813
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
405-937 |
4.76e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 4.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 405 NEIKKLTVELMKA---KDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRliQEVELKASAADREIYLLRTSlhREREQA 481
Cdd:PTZ00121 1305 DEAKKKAEEAKKAdeaKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEA--AADEAEAAEEKAEAAEKKKE--EAKKKA 1380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 482 QQLHQllalKEQEHRKELETREFFTDADFQDALAKEIAKEEKKHEQMIKEYQEKIDvlSQQYMDLENEFRIAltVEARRF 561
Cdd:PTZ00121 1381 DAAKK----KAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK--ADEAKKKAEEAKKA--DEAKKK 1452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 562 QDVKDGFENV---ATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAANLQNQINTLEILIEDD 638
Cdd:PTZ00121 1453 AEEAKKAEEAkkkAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE 1532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 639 KQKSIqiELLKHEKVQLISELAAKESLifglrteRKvwghelaqqgsslAQNRGKLEAQIESLSRENECLRKTNES-DSD 717
Cdd:PTZ00121 1533 AKKAD--EAKKAEEKKKADELKKAEEL-------KK-------------AEEKKKAEEAKKAEEDKNMALRKAEEAkKAE 1590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 718 ALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKE 797
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 798 VE----LEEIRKAYSTLNRKwhdKGELLCHLETQVKEVKEKFENKEKKLKAER-DKSIELQKNAMEKLHSMDDAFKRQVD 872
Cdd:PTZ00121 1671 EEdkkkAEEAKKAEEDEKKA---AEALKKEAEEAKKAEELKKKEAEEKKKAEElKKAEEENKIKAEEAKKEAEEDKKKAE 1747
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1164778457 873 A--IVEAHQAEIAQLANEKQKCIDSANLKVHQIEKEmrELLEETCKNKKTMEAKIKQLAFALNEIQQ 937
Cdd:PTZ00121 1748 EakKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE--ELDEEDEKRRMEVDKKIKDIFDNFANIIE 1812
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
319-934 |
7.47e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 7.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 319 KVDQSHSEDNTYQSLVEQLDQEREKRwRAEQAENKLMDYIDELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKGQLev 398
Cdd:COG4913 263 RYAAARERLAELEYLRAALRLWFAQR-RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDR-- 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 399 mVHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAADREIYLLRTSLHRER 478
Cdd:COG4913 340 -LEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLR 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 479 EQAQQLHQLLAlkeqehrkELETREFFTDADFQDALAkEIAKEEKKHEQMIKEYQEKIDVLSqqymdlENE--------- 549
Cdd:COG4913 419 RELRELEAEIA--------SLERRKSNIPARLLALRD-ALAEALGLDEAELPFVGELIEVRP------EEErwrgaierv 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 550 ---FRIALTVEARRFQDVKDGFENVATELA----KSKHALIWAQRKENESSSLIKDLTcmVKEQ------KTKLAEVSKL 616
Cdd:COG4913 484 lggFALTLLVPPEHYAAALRWVNRLHLRGRlvyeRVRTGLPDPERPRLDPDSLAGKLD--FKPHpfrawlEAELGRRFDY 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 617 KQ-ETAANLQNQintleilieddkQKSIQIE-LLKHEKV--QLISELAAKESLIFGLRTERKVwgHELAQQGSSLAQNRG 692
Cdd:COG4913 562 VCvDSPEELRRH------------PRAITRAgQVKGNGTrhEKDDRRRIRSRYVLGFDNRAKL--AALEAELAELEEELA 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 693 KLEAQIESLSREneclRKTNESDSDALRikcKIIDDQTETIRklkdcLQEKDEHIKRLQEKITEIEKcTQEQLDEKSSQL 772
Cdd:COG4913 628 EAEERLEALEAE----LDALQERREALQ---RLAEYSWDEID-----VASAEREIAELEAELERLDA-SSDDLAALEEQL 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 773 DEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLC-----HLETQVKEVKEKFENKEKKLK--AE 845
Cdd:COG4913 695 EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlelraLLEERFAAALGDAVERELRENleER 774
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 846 RDKSIELQKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQKCIDSANLKVHQIEKEMRELLeetcknKKTMEAKI 925
Cdd:COG4913 775 IDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEDGLPEYEERFKELL------NENSIEFV 848
|
....*....
gi 1164778457 926 KQLAFALNE 934
Cdd:COG4913 849 ADLLSKLRR 857
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
691-805 |
8.63e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.84 E-value: 8.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 691 RGKLEAQIESLSRENECLRKtnESDSDALRIKCKIIDDQTETIRKLKDCLQ----EKDEHIKRLQEKITEIEkctqEQLD 766
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILE--EAKKEAEAIKKEALLEAKEEIHKLRNEFEkelrERRNELQKLEKRLLQKE----ENLD 99
|
90 100 110
....*....|....*....|....*....|....*....
gi 1164778457 767 EKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRK 805
Cdd:PRK12704 100 RKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
681-891 |
8.89e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 8.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 681 AQQGSSLAQNRGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKc 760
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 761 tqeQLDEKSSQLDEVLEKLERhNERKEKLKQQLKGKEV-ELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKE 839
Cdd:COG4942 98 ---ELEAQKEELAELLRALYR-LGRQPPLALLLSPEDFlDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1164778457 840 KKLKAERDKsIELQKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQK 891
Cdd:COG4942 174 AELEALLAE-LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
17-76 |
1.13e-03 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 37.89 E-value: 1.13e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 17 NLTRLNVSYNHIDDLSGLIPLHGikHKLRYIDLHSNRIDSIHhlLQCMVGLHFLTNLILE 76
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGL--SNLKVLDLSNNLLTTLS--PGAFSGLPSLRYLDLS 57
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
693-890 |
1.16e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 693 KLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKIteiekctqEQLDEKSSQL 772
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAEL--------EELREELEKL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 773 DEVLEKLERHNERKEkLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLEtQVKEVKEKFENKEKKLKAERDKSIEL 852
Cdd:COG4717 122 EKLLQLLPLYQELEA-LEAELAELPERLEELEERLEELRELEEELEELEAELA-ELQEELEELLEQLSLATEEELQDLAE 199
|
170 180 190
....*....|....*....|....*....|....*...
gi 1164778457 853 QKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQ 890
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELE 237
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
359-939 |
1.21e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 359 DELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKGQLEVMVHKLQNEIKKLTVELMKAKDQQEDHLKhlrTLEKTLEKM 438
Cdd:TIGR00618 155 AQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQ---VLEKELKHL 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 439 ERQKRQQQAAQIRLIQEVELKASaadreiyllRTSLHREREQAQQLHQLLALKEQEHRKELETREFFTDADFQDALAKEI 518
Cdd:TIGR00618 232 REALQQTQQSHAYLTQKREAQEE---------QLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAV 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 519 AKEEKKHEQMIKEYQEKIDVLS----------QQYMDLENEFRIALTVEA-----RRFQDVKDGF-ENVATELAKSKHAL 582
Cdd:TIGR00618 303 TQIEQQAQRIHTELQSKMRSRAkllmkraahvKQQSSIEEQRRLLQTLHSqeihiRDAHEVATSIrEISCQQHTLTQHIH 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 583 IWAQRKE------NESSSLIKDLTCMVKEQKTKLAEVSKLKQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLI 656
Cdd:TIGR00618 383 TLQQQKTtltqklQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQ 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 657 SELAAKESLIFGLRTERKVWGHElaqqgsslaQNRGKLEAQIESLSRENECLRKTNESDSDALRIK-----------CKI 725
Cdd:TIGR00618 463 ESAQSLKEREQQLQTKEQIHLQE---------TRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDidnpgpltrrmQRG 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 726 IDDQT---ETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQeQLDEKSSQLDEVLEKLERHNERKEKLKQ-QLKGKEVELE 801
Cdd:TIGR00618 534 EQTYAqleTSEEDVYHQLTSERKQRASLKEQMQEIQQSFS-ILTQCDNRSKEDIPNLQNITVRLQDLTEkLSEAEDMLAC 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 802 EIRKAYSTLNRKWHDKGELL----CHLETQVKEVKEKFENKEKKLKAERDKSIELQKNAMEKLhsmddafkRQVDAIVEA 877
Cdd:TIGR00618 613 EQHALLRKLQPEQDLQDVRLhlqqCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELL--------ASRQLALQK 684
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1164778457 878 HQAEIAQLANEKQKC--IDSANLKVHQIEKEMRELLEETCKNKKTMEAKIKQLAFALNEIQQDM 939
Cdd:TIGR00618 685 MQSEKEQLTYWKEMLaqCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKEL 748
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
315-803 |
1.58e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 315 TEIIKVDQSHSEDNtyQSLVEQLDQEREKRWRAEQAENKLMDYIDELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKG 394
Cdd:COG1196 267 AELEELRLELEELE--LELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 395 QLEVMVHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAADREIYLLRTSL 474
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 475 HREREQAQQLHQLLALKEQEHRKELETREFFTD-ADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRIA 553
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEEAELEEEeEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 554 LTVEARRFQDVKDGFENVATELAkskhALIWAQRK-----ENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAANLQ--N 626
Cdd:COG1196 505 GFLEGVKAALLLAGLRGLAGAVA----VLIGVEAAyeaalEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLplD 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 627 QINTLEILI---------------------EDDKQKSIQIELLKHEKVQLISELAAKES-LIFGLRTERKVWGHELAQQG 684
Cdd:COG1196 581 KIRARAALAaalargaigaavdlvasdlreADARYYVLGDTLLGRTLVAARLEAALRRAvTLAGRLREVTLEGEGGSAGG 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 685 SSLAQNRGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQ 764
Cdd:COG1196 661 SLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEE 740
|
490 500 510
....*....|....*....|....*....|....*....
gi 1164778457 765 LDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEI 803
Cdd:COG1196 741 LLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
307-888 |
1.93e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 307 LQESEKPKTEIIKvdqshsEDNTYQSLVEQLDQEREKRWRAEQAENKLMDYIDELHKhanEKEDIHSLALLTTDRLKEII 386
Cdd:PRK03918 195 IKEKEKELEEVLR------EINEISSELPELREELEKLEKEVKELEELKEEIEELEK---ELESLEGSKRKLEEKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 387 FRERNSKGQLEVMVHKLQ--NEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQqaaqIRLIQEVELKASAAD 464
Cdd:PRK03918 266 ERIEELKKEIEELEEKVKelKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI----EERIKELEEKEERLE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 465 ---REIYLLRTSLHREREQAQQLHQLLALKEQ--EHRKELETREfftdadfqdalAKEIAKEEKKHEQMIKEYQEKIDVL 539
Cdd:PRK03918 342 elkKKLKELEKRLEELEERHELYEEAKAKKEEleRLKKRLTGLT-----------PEKLEKELEELEKAKEEIEEEISKI 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 540 SQQYMDLENefrialtvearRFQDVKDGFEnvATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQE 619
Cdd:PRK03918 411 TARIGELKK-----------EIKELKKAIE--ELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERK 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 620 TAANLQNQINTLEILIEDDKQKSI--QIELLKHE-KVQLISELAAKESLIFGLRTERKvwghELAQQGSSLAQNRGKLEA 696
Cdd:PRK03918 478 LRKELRELEKVLKKESELIKLKELaeQLKELEEKlKKYNLEELEKKAEEYEKLKEKLI----KLKGEIKSLKKELEKLEE 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 697 QIESLSRENECLRKTNESDSDALRI----KCKIIDDQTETIRKLKDCLQEKDE---HIKRLQEKITEIEKCtQEQLDEKS 769
Cdd:PRK03918 554 LKKKLAELEKKLDELEEELAELLKEleelGFESVEELEERLKELEPFYNEYLElkdAEKELEREEKELKKL-EEELDKAF 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 770 SQLDEVLEKLERHNERKEKLKQqlKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKEKKLKA--ERD 847
Cdd:PRK03918 633 EELAETEKRLEELRKELEELEK--KYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEreKAK 710
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1164778457 848 KSIELQKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANE 888
Cdd:PRK03918 711 KELEKLEKALERVEELREKVKKYKALLKERALSKVGEIASE 751
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
308-767 |
2.18e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 308 QESEKPKTEIIKVDQSHSEDNTYQSLVEQLDQEREKRWRAEQAENKLMDY--IDELHKHANEKEDIHSLALLTTDRLK-E 384
Cdd:PTZ00121 1381 DAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKkkADEAKKKAEEAKKADEAKKKAEEAKKaE 1460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 385 IIFRERNSKGQLEVMvhKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAAD 464
Cdd:PTZ00121 1461 EAKKKAEEAKKADEA--KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE 1538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 465 reiylLRTSlhREREQAQQLHQLLALKEQEHRKELETREFFTDADFQDALAKEIAK--EEKKHEQMIKEYQEKIDVLSQQ 542
Cdd:PTZ00121 1539 -----AKKA--EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKkaEEARIEEVMKLYEEEKKMKAEE 1611
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 543 YMDLENEFRIAltVEARRFQDVKDGFENVATELAKSKHALiwAQRKENESSSLIKdltcmvKEQKTKLAEVSKLKQETAA 622
Cdd:PTZ00121 1612 AKKAEEAKIKA--EELKKAEEEKKKVEQLKKKEAEEKKKA--EELKKAEEENKIK------AAEEAKKAEEDKKKAEEAK 1681
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 623 NLqnqintleiliEDDKQKSIQIELLKHEKVQLISELAAKESlifglrtERKVWGHELAQQGSSLAQNRGKLEAQIESLS 702
Cdd:PTZ00121 1682 KA-----------EEDEKKAAEALKKEAEEAKKAEELKKKEA-------EEKKKAEELKKAEEENKIKAEEAKKEAEEDK 1743
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 703 RENECLRKTNESDSDALRIKcKIIDDQTETIRK-----LKDCLQEKDEHIKRLQEKITEIEKCTQEQLDE 767
Cdd:PTZ00121 1744 KKAEEAKKDEEEKKKIAHLK-KEEEKKAEEIRKekeavIEEELDEEDEKRRMEVDKKIKDIFDNFANIIE 1812
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
585-830 |
2.25e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 585 AQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAaNLQNQINTLEILIEDDKQK-----------SIQIELLKHEKV 653
Cdd:TIGR04523 407 NQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIK-DLTNQDSVKELIIKNLDNTresletqlkvlSRSINKIKQNLE 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 654 QLISELAAKESLIFGLRTERKvwghELAQQGSSLAQNRGKLEAQIESLsrENECLRKTNESDSdalrIKCKII-DDQTET 732
Cdd:TIGR04523 486 QKQKELKSKEKELKKLNEEKK----ELEEKVKDLTKKISSLKEKIEKL--ESEKKEKESKISD----LEDELNkDDFELK 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 733 IRKLKDCLQEKDEHIKRLQEKITEIEKCT---QEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYST 809
Cdd:TIGR04523 556 KENLEKEIDEKNKEIEELKQTQKSLKKKQeekQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKN 635
|
250 260
....*....|....*....|.
gi 1164778457 810 LNRKWHDKGELLCHLETQVKE 830
Cdd:TIGR04523 636 IKSKKNKLKQEVKQIKETIKE 656
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
613-813 |
2.74e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 613 VSKLKQETAANLQNQINTLEILIEDDKQKSIQIELLKHEK---VQLISELAAKESLIFGLRTERKVWGHEL-----AQQG 684
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEeeyAELQEELEELEEELEELEAELEELREELeklekLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 685 SSLAQNRGKLEAQIESLSRENECLRKtnesdsdalrikckiiddQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEq 764
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELEE------------------RLEELRELEEELEELEAELAELQEELEELLEQLSL- 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1164778457 765 ldEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRK 813
Cdd:COG4717 189 --ATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENE 235
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
380-584 |
3.41e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 380 DRLKEIIFRERNSKGQLEVMVHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQ----- 454
Cdd:COG4942 37 AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRalyrl 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 455 ----EVELKASAAD-----REIYLLRTSLHREREQAQQLHQLLA-LKEQEHRKELETREFFTDADFQDALAKEIAKEEKK 524
Cdd:COG4942 117 grqpPLALLLSPEDfldavRRLQYLKYLAPARREQAEELRADLAeLAALRAELEAERAELEALLAELEEERAALEALKAE 196
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1164778457 525 HEQMIKEYQEKIDVLSQQYMDL-ENEFRIALTVEARRFQDVKDGFENVATELAKSKHALIW 584
Cdd:COG4942 197 RQKLLARLEKELAELAAELAELqQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLPW 257
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
569-802 |
3.61e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 3.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 569 ENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAANLQNQINTLEILIEDDKQKSIQIELL 648
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 649 KHEKVQLISELAAKESLIFGLRTERKVWGHELAQQGssLAQNRGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDD 728
Cdd:TIGR02169 757 KSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1164778457 729 QTETIRKLKDCLQEKDEHIKRLQEKITEIEKcTQEQLDEKSS---QLDEVLEKLERHNERKEKLKQQLKGKEVELEE 802
Cdd:TIGR02169 835 IQELQEQRIDLKEQIKSIEKEIENLNGKKEE-LEEELEELEAalrDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
474-935 |
4.09e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.04 E-value: 4.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 474 LHREREQAQQLHQLlALKEQEHRKElETREFFTDADFQDALAKEIAKEEKKhEQMIKEYQEKIDVLSQQYMDLENEFRIA 553
Cdd:PRK01156 216 TLKEIERLSIEYNN-AMDDYNNLKS-ALNELSSLEDMKNRYESEIKTAESD-LSMELEKNNYYKELEERHMKIINDPVYK 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 554 LTVEARRF-------QDVKDGFENVATELAKSKHALiwaqRKENESSSLIKDLTCMVKEQKTKLAEVSKLKqETAANLQN 626
Cdd:PRK01156 293 NRNYINDYfkykndiENKKQILSNIDAEINKYHAII----KKLSVLQKDYNDYIKKKSRYDDLNNQILELE-GYEMDYNS 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 627 QINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKVWGHELAQQGSSLAQNRGKLEAQIESLSRENE 706
Cdd:PRK01156 368 YLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNME 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 707 CLRKTNesdsdalriKCKIIDDQTETiRKLKDCLQEKDEHIKRLQEKITEIEKcTQEQLDEKSSQLDEVLEKLERHN-ER 785
Cdd:PRK01156 448 MLNGQS---------VCPVCGTTLGE-EKSNHIINHYNEKKSRLEEKIREIEI-EVKDIDEKIVDLKKRKEYLESEEiNK 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 786 KEKLKQQLKGKEVELEEIRKAYSTLNRKwHDKGELLCHLETQVKEVKEKFENKEKKLKAERDKSIE---LQKNAMEKLHS 862
Cdd:PRK01156 517 SINEYNKIESARADLEDIKIKINELKDK-HDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDietNRSRSNEIKKQ 595
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1164778457 863 MDDAFKRQVDAIVEAHQAE--IAQLANEKQKCIDSANLKVHQIE--KEMRELLEETCKNKKTMEAKIKQLAFALNEI 935
Cdd:PRK01156 596 LNDLESRLQEIEIGFPDDKsyIDKSIREIENEANNLNNKYNEIQenKILIEKLRGKIDNYKKQIAEIDSIIPDLKEI 672
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
693-805 |
5.25e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.61 E-value: 5.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 693 KLEAQIESLSRENECLRKT-NESDSDALRIKCKIIDDQTETIRKLKdclqeKDEHIKRLQEKIteiekctqEQLDEKSSQ 771
Cdd:COG2433 417 RLEEQVERLEAEVEELEAElEEKDERIERLERELSEARSEERREIR-----KDREISRLDREI--------ERLERELEE 483
|
90 100 110
....*....|....*....|....*....|....*
gi 1164778457 772 LDEVLEKLERHNER-KEKLKQQLKGKEVELEEIRK 805
Cdd:COG2433 484 ERERIEELKRKLERlKELWKLEHSGELVPVKVVEK 518
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
380-679 |
6.48e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 6.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 380 DRLKeiifRERNSKGQLEVMVHKLQN-EIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQA---AQIRLIQE 455
Cdd:TIGR02169 201 ERLR----REREKAERYQALLKEKREyEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKrleEIEQLLEE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 456 VELKASA-ADREIYLLRTSLHREREQAQQLHQLLALKEQEhRKELETREFFTDADFQ------DALAKEIAKEEKKHEQM 528
Cdd:TIGR02169 277 LNKKIKDlGEEEQLRVKEKIGELEAEIASLERSIAEKERE-LEDAEERLAKLEAEIDkllaeiEELEREIEEERKRRDKL 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 529 IKEYQE---KIDVLSQQYMDLENEFRIALtveaRRFQDVKDGFENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKE 605
Cdd:TIGR02169 356 TEEYAElkeELEDLRAELEEVDKEFAETR----DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG 431
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1164778457 606 QKTKLAEVSKLKQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKVWGHE 679
Cdd:TIGR02169 432 IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
9-120 |
8.68e-03 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 39.53 E-value: 8.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778457 9 CRGLEELINLTRLNVSYNHIDDLSGLIPLHgikHKLRYIDLHSNRIDSIHHLLQcmvGLHFLTNLILekdgDDNPVCRLP 88
Cdd:COG4886 106 NEELSNLTNLESLDLSGNQLTDLPEELANL---TNLKELDLSNNQLTDLPEPLG---NLTNLKSLDL----SNNQLTDLP 175
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1164778457 89 gyraVILQTLPQLRILDCKN--------IFGEPVNLTEIN 120
Cdd:COG4886 176 ----EELGNLTNLKELDLSNnqitdlpePLGNLTNLEELD 211
|
|
| |
