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Conserved domains on  [gi|1143474954|ref|NP_001335574|]
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Protein lev-9 [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA02927 super family cl33700
secreted complement-binding protein; Provisional
 127-363 3.00e-25

secreted complement-binding protein; Provisional


The actual alignment was detected with superfamily member PHA02927:

Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 106.66  E-value: 3.00e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  127 PPEIPFAVHDGSSFSGEYDLDAEVAYNCIPGYHKfNAKGLSISKCLLNRKNVAQwfgpdlRCKARACPDPGDIENGLREG 206
Cdd:PHA02927    27 PINMKFKNSVETDANANYNIGDTIEYLCLPGYRK-QKMGPIYAKCTGTGWTLFN------QCIKRRCPSPRDIDNGQLDI 99

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  207 DTFEYPHHVKYSCNPGFLLVGSTSRQCS--SNGE--WTNEPANCKATECSRPSSPLHGKVVGSSLTYQ--SVVTYSCDHG 280
Cdd:PHA02927   100 GGVDFGSSITYSCNSGYQLIGESKSYCElgSTGSmvWNPEAPICESVKCQSPPSISNGRHNGYEDFYTdgSVVTYSCNSG 179

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  281 YRLVGQVQRIClAEGIWgGNEPRCEEIRCSvLPTLPNGYIEGS---ETSFGAVAVFRCLETMTHEGASKAKCMEDGQWSA 357
Cdd:PHA02927   180 YSLIGNSGVLC-SGGEW-SDPPTCQIVKCP-HPTISNGYLSSGfkrSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQP 256


                   ....*.
gi 1143474954  358 PIPRCL 363
Cdd:PHA02927   257 ELPKCV 262
PHA02927 super family cl33700
secreted complement-binding protein; Provisional
 1106-1343 1.89e-13

secreted complement-binding protein; Provisional


The actual alignment was detected with superfamily member PHA02927:

Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 71.99  E-value: 1.89e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1106 CLLPIGPTNLQVDLSSPTLF-----VGTVAQFSCPPGFSVE--GSAVSTCLEDAtWShSAPRCVAAHCPAVF-VNGTRMT 1177
Cdd:PHA02927    21 CTIPSRPINMKFKNSVETDAnanynIGDTIEYLCLPGYRKQkmGPIYAKCTGTG-WT-LFNQCIKRRCPSPRdIDNGQLD 98

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1178 VTVTSYrtGGVAHFKCHKGFTLIGEQNLHC----TTQGTWSHDFPYCNVVHCPplLPPA--NGHFIGEpKEINTKGDIVL 1251
Cdd:PHA02927    99 IGGVDF--GSSITYSCNSGYQLIGESKSYCelgsTGSMVWNPEAPICESVKCQ--SPPSisNGRHNGY-EDFYTDGSVVT 173

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1252 LGCLPNYMLTGGDFSVCQAdGEWSEIKTKCDGYCRHPgQPDHGATTTIAKDYYSIGEKIVFYCpSQNYKLSSDNVLVCIS 1331
Cdd:PHA02927   174 YSCNSGYSLIGNSGVLCSG-GEWSDPPTCQIVKCPHP-TISNGYLSSGFKRSYSYNDNVDFKC-KYGYKLSGSSSSTCSP 250

                          250
                   ....*....|..
gi 1143474954 1332 PGQWSRRLPLCL 1343
Cdd:PHA02927   251 GNTWQPELPKCV 262
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 64-119 8.68e-12

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


:

Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 61.32  E-value: 8.68e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1143474954   64 CHPLPNIENGFIRTA-GDLRFGSNAEYGCNKGYILVGASQRRCQANKEWSSSQPVCR 119
Cdd:cd00033      1 CPPPPVPENGTVTGSkGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
PHA02927 super family cl33700
secreted complement-binding protein; Provisional
 377-557 3.90e-09

secreted complement-binding protein; Provisional


The actual alignment was detected with superfamily member PHA02927:

Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 59.28  E-value: 3.90e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  377 RDKSEGQL----IASGSKVIVECNKQHEANIDERLICS-NSTWSHV-----PVCSPLSCHNwPPRVPHARILFSKS--SH 444
Cdd:PHA02927    90 RDIDNGQLdiggVDFGSSITYSCNSGYQLIGESKSYCElGSTGSMVwnpeaPICESVKCQS-PPSISNGRHNGYEDfyTD 168

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  445 GSIAKYECNNGYHPNRNNQIIkCLYGEWTKdgpPMKCLPSWCEHPSKTYGTLPGGqillegilgayefqsYIQKVEEGRA 524
Cdd:PHA02927   169 GSVVTYSCNSGYSLIGNSGVL-CSGGEWSD---PPTCQIVKCPHPTISNGYLSSG---------------FKRSYSYNDN 229

                          170       180       190
                   ....*....|....*....|....*....|....
gi 1143474954  525 ISFQCGKGNYLIGPPKATCVNGE-WMPKVsPKCV 557
Cdd:PHA02927   230 VDFKCKYGYKLSGSSSSTCSPGNtWQPEL-PKCV 262
Ig super family cl11960
Immunoglobulin domain; The members here are composed of the immunoglobulin (Ig) domain found ...
 1015-1101 5.78e-05

Immunoglobulin domain; The members here are composed of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, including T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, including butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Ig superfamily (IgSF) domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Typically, the V-set domains have A, B, E, and D strands in one sheet and A', G, F, C, C' and C" in the other. The structures in C1-set are smaller than those in the V-set; they have one beta sheet that is formed by strands A, B, E, and D and the other by strands G, F, C, and C'. Moreover, a C1-set Ig domain contains a short C' strand (three residues) and lacks A' and C" strand. Unlike other Ig domain sets, C2-set structures do not have a D strand. Like the V-set Ig domains, members of the I-set have a discontinuous A strand, but lack a C" strand.


The actual alignment was detected with superfamily member cd20946:

Pssm-ID: 472250  Cd Length: 102  Bit Score: 43.29  E-value: 5.78e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1015 SSKGELIVSRAANVKLACLTEKVASDPI--WKVTSTYRSYPTQWTKAKTGDYDD---IDGFEISIASVQPFDSGMLHC-- 1087
Cdd:cd20946      4 SSQQVVTVVENQEVILSCKTPKKTSSPRveWKKLQRDVTFVVFQNNKIQGDYKGraeILGTNITIKNVTRSDSGKYRCev 83

                           90
                   ....*....|....*...
gi 1143474954 1088 VLPNGARN----SIKLIV 1101
Cdd:cd20946     84 SARSDGQNlgevTVTLEV 101
WAP pfam00095
WAP-type (Whey Acidic Protein) 'four-disulfide core'; WAP belongs to the group of Elafin or ...
 18-60 6.52e-03

WAP-type (Whey Acidic Protein) 'four-disulfide core'; WAP belongs to the group of Elafin or elastase-specific inhibitors.


:

Pssm-ID: 459672 [Multi-domain]  Cd Length: 42  Bit Score: 35.86  E-value: 6.52e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1143474954   18 SCPEVTLSQRpkhCKKECIADEDCKRNKRCmCDGECGLSCVNP 60
Cdd:pfam00095    4 CCPRLGARGC---CRSCCSSDDDCPGRQKC-CSNGCGSVCVPP 42
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 127-363 3.00e-25

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 106.66  E-value: 3.00e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  127 PPEIPFAVHDGSSFSGEYDLDAEVAYNCIPGYHKfNAKGLSISKCLLNRKNVAQwfgpdlRCKARACPDPGDIENGLREG 206
Cdd:PHA02927    27 PINMKFKNSVETDANANYNIGDTIEYLCLPGYRK-QKMGPIYAKCTGTGWTLFN------QCIKRRCPSPRDIDNGQLDI 99

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  207 DTFEYPHHVKYSCNPGFLLVGSTSRQCS--SNGE--WTNEPANCKATECSRPSSPLHGKVVGSSLTYQ--SVVTYSCDHG 280
Cdd:PHA02927   100 GGVDFGSSITYSCNSGYQLIGESKSYCElgSTGSmvWNPEAPICESVKCQSPPSISNGRHNGYEDFYTdgSVVTYSCNSG 179

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  281 YRLVGQVQRIClAEGIWgGNEPRCEEIRCSvLPTLPNGYIEGS---ETSFGAVAVFRCLETMTHEGASKAKCMEDGQWSA 357
Cdd:PHA02927   180 YSLIGNSGVLC-SGGEW-SDPPTCQIVKCP-HPTISNGYLSSGfkrSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQP 256


                   ....*.
gi 1143474954  358 PIPRCL 363
Cdd:PHA02927   257 ELPKCV 262
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 1106-1343 1.89e-13

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 71.99  E-value: 1.89e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1106 CLLPIGPTNLQVDLSSPTLF-----VGTVAQFSCPPGFSVE--GSAVSTCLEDAtWShSAPRCVAAHCPAVF-VNGTRMT 1177
Cdd:PHA02927    21 CTIPSRPINMKFKNSVETDAnanynIGDTIEYLCLPGYRKQkmGPIYAKCTGTG-WT-LFNQCIKRRCPSPRdIDNGQLD 98

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1178 VTVTSYrtGGVAHFKCHKGFTLIGEQNLHC----TTQGTWSHDFPYCNVVHCPplLPPA--NGHFIGEpKEINTKGDIVL 1251
Cdd:PHA02927    99 IGGVDF--GSSITYSCNSGYQLIGESKSYCelgsTGSMVWNPEAPICESVKCQ--SPPSisNGRHNGY-EDFYTDGSVVT 173

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1252 LGCLPNYMLTGGDFSVCQAdGEWSEIKTKCDGYCRHPgQPDHGATTTIAKDYYSIGEKIVFYCpSQNYKLSSDNVLVCIS 1331
Cdd:PHA02927   174 YSCNSGYSLIGNSGVLCSG-GEWSDPPTCQIVKCPHP-TISNGYLSSGFKRSYSYNDNVDFKC-KYGYKLSGSSSSTCSP 250

                          250
                   ....*....|..
gi 1143474954 1332 PGQWSRRLPLCL 1343
Cdd:PHA02927   251 GNTWQPELPKCV 262
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 193-247 1.67e-12

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 63.25  E-value: 1.67e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1143474954  193 CPDPGDIENGLREGDTFEYPH--HVKYSCNPGFLLVGSTSRQCSSNGEWTNEPANCK 247
Cdd:cd00033      1 CPPPPVPENGTVTGSKGSYSYgsTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 64-119 8.68e-12

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 61.32  E-value: 8.68e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1143474954   64 CHPLPNIENGFIRTA-GDLRFGSNAEYGCNKGYILVGASQRRCQANKEWSSSQPVCR 119
Cdd:cd00033      1 CPPPPVPENGTVTGSkGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 64-118 1.97e-11

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 60.23  E-value: 1.97e-11
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 1143474954    64 CHPLPNIENGFIR-TAGDLRFGSNAEYGCNKGYILVGASQRRCQANKEWSSSQPVC 118
Cdd:smart00032    1 CPPPPDIENGTVTsSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 1106-1161 6.95e-11

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 58.69  E-value: 6.95e-11
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 1143474954  1106 CLLPIGPTNLQVDLSSPTLFVGTVAQFSCPPGFSVEGSAVSTCLEDATWSHSAPRC 1161
Cdd:smart00032    1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 193-246 1.07e-10

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 58.31  E-value: 1.07e-10
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 1143474954   193 CPDPGDIENGLREGDTFEYPH--HVKYSCNPGFLLVGSTSRQCSSNGEWTNEPANC 246
Cdd:smart00032    1 CPPPPDIENGTVTSSSGTYSYgdTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 1106-1162 8.60e-10

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 55.55  E-value: 8.60e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1143474954 1106 CLLPIGPTNLQVDLSSPTLFVGTVAQFSCPPGFSVEGSAVSTCLEDATWSHSAPRCV 1162
Cdd:cd00033      1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 377-557 3.90e-09

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 59.28  E-value: 3.90e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  377 RDKSEGQL----IASGSKVIVECNKQHEANIDERLICS-NSTWSHV-----PVCSPLSCHNwPPRVPHARILFSKS--SH 444
Cdd:PHA02927    90 RDIDNGQLdiggVDFGSSITYSCNSGYQLIGESKSYCElGSTGSMVwnpeaPICESVKCQS-PPSISNGRHNGYEDfyTD 168

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  445 GSIAKYECNNGYHPNRNNQIIkCLYGEWTKdgpPMKCLPSWCEHPSKTYGTLPGGqillegilgayefqsYIQKVEEGRA 524
Cdd:PHA02927   169 GSVVTYSCNSGYSLIGNSGVL-CSGGEWSD---PPTCQIVKCPHPTISNGYLSSG---------------FKRSYSYNDN 229

                          170       180       190
                   ....*....|....*....|....*....|....
gi 1143474954  525 ISFQCGKGNYLIGPPKATCVNGE-WMPKVsPKCV 557
Cdd:PHA02927   230 VDFKCKYGYKLSGSSSSTCSPGNtWQPEL-PKCV 262
Sushi pfam00084
Sushi repeat (SCR repeat);
309-362 4.76e-09

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 53.66  E-value: 4.76e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1143474954  309 CSVLPTLPNGYIEGS--ETSFGAVAVFRCLETMTHEGASKAKCMEDGQWSAPIPRC 362
Cdd:pfam00084    1 CPPPPDIPNGKVSATknEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
1106-1161 6.96e-08

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 50.19  E-value: 6.96e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1143474954 1106 CLLPIGPTNLQVDLSSPTLFVGTVAQFSCPPGFSVEGSAVSTCLEDATWSHSAPRC 1161
Cdd:pfam00084    1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
64-118 2.61e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 48.65  E-value: 2.61e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1143474954   64 CHPLPNIENGFIR-TAGDLRFGSNAEYGCNKGYILVGASQRRCQANKEWSSSQPVC 118
Cdd:pfam00084    1 CPPPPDIPNGKVSaTKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
IgV_1_JAM1-like cd20946
First Ig-like domain of Junctional adhesion molecule-1 (JAM1)and similar domains; a member of ...
 1015-1101 5.78e-05

First Ig-like domain of Junctional adhesion molecule-1 (JAM1)and similar domains; a member of the V-set of IgSF domains; The members here are composed of the first Ig-like domain of Junctional Adhesion Molecule-1 (JAM1)and similar domains. JAM1 is an immunoglobulin superfamily (IgSF) protein with two Ig-like domains in its extracellular region; it plays a role in the formation of endothelial and epithelial tight junction and acts as a receptor for mammalian reovirus sigma-1. The IgSF is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. The two sheets are linked together by a conserved disulfide bond between B strand and F strand. IgSF domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. The first Ig-like domain of JAM1 is a member of the V-set Ig domains, having A-B-E-D strands in one beta-sheet and A'-G-F-C-C'-C" in the other.


Pssm-ID: 409538  Cd Length: 102  Bit Score: 43.29  E-value: 5.78e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1015 SSKGELIVSRAANVKLACLTEKVASDPI--WKVTSTYRSYPTQWTKAKTGDYDD---IDGFEISIASVQPFDSGMLHC-- 1087
Cdd:cd20946      4 SSQQVVTVVENQEVILSCKTPKKTSSPRveWKKLQRDVTFVVFQNNKIQGDYKGraeILGTNITIKNVTRSDSGKYRCev 83

                           90
                   ....*....|....*...
gi 1143474954 1088 VLPNGARN----SIKLIV 1101
Cdd:cd20946     84 SARSDGQNlgevTVTLEV 101
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 425-481 2.93e-04

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 40.14  E-value: 2.93e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  425 CHNwPPRVPHARILFSKS--SHGSIAKYECNNGYHPnRNNQIIKCL-YGEWTkdGPPMKC 481
Cdd:cd00033      1 CPP-PPVPENGTVTGSKGsySYGSTVTYSCNEGYTL-VGSSTITCTeNGGWS--PPPPTC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 425-481 3.83e-03

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 36.74  E-value: 3.83e-03
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954   425 CHNwPPRVPHARILFSKS--SHGSIAKYECNNGYHPNRNNqIIKCL-YGEWTkdGPPMKC 481
Cdd:smart00032    1 CPP-PPDIENGTVTSSSGtySYGDTVTYSCDPGYTLIGSS-TITCLeNGTWS--PPPPTC 56
WAP pfam00095
WAP-type (Whey Acidic Protein) 'four-disulfide core'; WAP belongs to the group of Elafin or ...
 18-60 6.52e-03

WAP-type (Whey Acidic Protein) 'four-disulfide core'; WAP belongs to the group of Elafin or elastase-specific inhibitors.


Pssm-ID: 459672 [Multi-domain]  Cd Length: 42  Bit Score: 35.86  E-value: 6.52e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1143474954   18 SCPEVTLSQRpkhCKKECIADEDCKRNKRCmCDGECGLSCVNP 60
Cdd:pfam00095    4 CCPRLGARGC---CRSCCSSDDDCPGRQKC-CSNGCGSVCVPP 42
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 127-363 3.00e-25

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 106.66  E-value: 3.00e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  127 PPEIPFAVHDGSSFSGEYDLDAEVAYNCIPGYHKfNAKGLSISKCLLNRKNVAQwfgpdlRCKARACPDPGDIENGLREG 206
Cdd:PHA02927    27 PINMKFKNSVETDANANYNIGDTIEYLCLPGYRK-QKMGPIYAKCTGTGWTLFN------QCIKRRCPSPRDIDNGQLDI 99

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  207 DTFEYPHHVKYSCNPGFLLVGSTSRQCS--SNGE--WTNEPANCKATECSRPSSPLHGKVVGSSLTYQ--SVVTYSCDHG 280
Cdd:PHA02927   100 GGVDFGSSITYSCNSGYQLIGESKSYCElgSTGSmvWNPEAPICESVKCQSPPSISNGRHNGYEDFYTdgSVVTYSCNSG 179

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  281 YRLVGQVQRIClAEGIWgGNEPRCEEIRCSvLPTLPNGYIEGS---ETSFGAVAVFRCLETMTHEGASKAKCMEDGQWSA 357
Cdd:PHA02927   180 YSLIGNSGVLC-SGGEW-SDPPTCQIVKCP-HPTISNGYLSSGfkrSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQP 256


                   ....*.
gi 1143474954  358 PIPRCL 363
Cdd:PHA02927   257 ELPKCV 262
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 66-246 2.01e-16

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 80.85  E-value: 2.01e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954   66 PLP-NIENGFIRTAGdLRFGSNAEYGCNKGYILVGASQRRCQ----ANKEWSSSQPVCRlQLKCGPPPEIPFAVHDGssF 140
Cdd:PHA02927    87 PSPrDIDNGQLDIGG-VDFGSSITYSCNSGYQLIGESKSYCElgstGSMVWNPEAPICE-SVKCQSPPSISNGRHNG--Y 162

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  141 SGEYDLDAEVAYNCIPGYHKFNAKGLSISKcllnrknvAQWFGPDlRCKARACPDPgDIENG-LREG--DTFEYPHHVKY 217
Cdd:PHA02927   163 EDFYTDGSVVTYSCNSGYSLIGNSGVLCSG--------GEWSDPP-TCQIVKCPHP-TISNGyLSSGfkRSYSYNDNVDF 232

                          170       180
                   ....*....|....*....|....*....
gi 1143474954  218 SCNPGFLLVGSTSRQCSSNGEWTNEPANC 246
Cdd:PHA02927   233 KCKYGYKLSGSSSSTCSPGNTWQPELPKC 261
PHA02639 PHA02639
EEV host range protein; Provisional
 189-363 2.50e-15

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 78.17  E-value: 2.50e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  189 KARACPDPGDIENGL--REGDTFEYPHHVKYSCNPGFLLVGSTSRQC---SSNGEWTNEPANCKATECSRPSSPLHGKVV 263
Cdd:PHA02639    18 KSIYCDKPDDISNGFitELMEKYEIGKLIEYTCNTDYALIGDRFRTCikdKNNAIWSNKAPFCMLKECNDPPSIINGKIY 97

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  264 GSSLTYQ--SVVTYSCDH----GYRLVGQVQRICLAEGIWGGNEPRCEEIRCSvLPTLPNGYIEGSETS----FGAVAVF 333
Cdd:PHA02639    98 NKREMYKvgDEIYYVCNEhkgvQYSLVGNEKITCIQDKSWKPDPPICKMINCR-FPALQNGYINGIPSNkkfyYKTRVGF 176

                          170       180       190
                   ....*....|....*....|....*....|
gi 1143474954  334 RCLETMTHEGASKAKCMEDGQWSAPIPRCL 363
Cdd:PHA02639   177 SCKSGFDLVGEKYSTCNINATWFPSIPTCV 206
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 1106-1343 1.89e-13

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 71.99  E-value: 1.89e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1106 CLLPIGPTNLQVDLSSPTLF-----VGTVAQFSCPPGFSVE--GSAVSTCLEDAtWShSAPRCVAAHCPAVF-VNGTRMT 1177
Cdd:PHA02927    21 CTIPSRPINMKFKNSVETDAnanynIGDTIEYLCLPGYRKQkmGPIYAKCTGTG-WT-LFNQCIKRRCPSPRdIDNGQLD 98

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1178 VTVTSYrtGGVAHFKCHKGFTLIGEQNLHC----TTQGTWSHDFPYCNVVHCPplLPPA--NGHFIGEpKEINTKGDIVL 1251
Cdd:PHA02927    99 IGGVDF--GSSITYSCNSGYQLIGESKSYCelgsTGSMVWNPEAPICESVKCQ--SPPSisNGRHNGY-EDFYTDGSVVT 173

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1252 LGCLPNYMLTGGDFSVCQAdGEWSEIKTKCDGYCRHPgQPDHGATTTIAKDYYSIGEKIVFYCpSQNYKLSSDNVLVCIS 1331
Cdd:PHA02927   174 YSCNSGYSLIGNSGVLCSG-GEWSDPPTCQIVKCPHP-TISNGYLSSGFKRSYSYNDNVDFKC-KYGYKLSGSSSSTCSP 250

                          250
                   ....*....|..
gi 1143474954 1332 PGQWSRRLPLCL 1343
Cdd:PHA02927   251 GNTWQPELPKCV 262
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 193-247 1.67e-12

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 63.25  E-value: 1.67e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1143474954  193 CPDPGDIENGLREGDTFEYPH--HVKYSCNPGFLLVGSTSRQCSSNGEWTNEPANCK 247
Cdd:cd00033      1 CPPPPVPENGTVTGSKGSYSYgsTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 64-119 8.68e-12

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 61.32  E-value: 8.68e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1143474954   64 CHPLPNIENGFIRTA-GDLRFGSNAEYGCNKGYILVGASQRRCQANKEWSSSQPVCR 119
Cdd:cd00033      1 CPPPPVPENGTVTGSkGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 1103-1281 9.14e-12

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 66.99  E-value: 9.14e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1103 EEKCLLPIGPTNLQVDLSSPTLfvGTVAQFSCPPGFSVEGSAVSTCLEDAT----WSHSAPRCVAAHC--PAVFVNGtRM 1176
Cdd:PHA02927    83 KRRCPSPRDIDNGQLDIGGVDF--GSSITYSCNSGYQLIGESKSYCELGSTgsmvWNPEAPICESVKCqsPPSISNG-RH 159

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1177 TVTVTSYRTGGVAHFKCHKGFTLIGEQNLHCTTqGTWShDFPYCNVVHCP-PLLppANGHFIGEPKEINTKGDIVLLGCL 1255
Cdd:PHA02927   160 NGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCSG-GEWS-DPPTCQIVKCPhPTI--SNGYLSSGFKRSYSYNDNVDFKCK 235

                          170       180
                   ....*....|....*....|....*.
gi 1143474954 1256 PNYMLTGGDFSVCQADGEWSEIKTKC 1281
Cdd:PHA02927   236 YGYKLSGSSSSTCSPGNTWQPELPKC 261
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 64-118 1.97e-11

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 60.23  E-value: 1.97e-11
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 1143474954    64 CHPLPNIENGFIR-TAGDLRFGSNAEYGCNKGYILVGASQRRCQANKEWSSSQPVC 118
Cdd:smart00032    1 CPPPPDIENGTVTsSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
PHA02639 PHA02639
EEV host range protein; Provisional
 1126-1274 2.32e-11

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 66.23  E-value: 2.32e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1126 VGTVAQFSCPPGFSVEGSAVSTCLED---ATWSHSAPRCVAAHC--PAVFVNGtRMTVTVTSYRTGGVAHFKC--HKG-- 1196
Cdd:PHA02639    42 IGKLIEYTCNTDYALIGDRFRTCIKDknnAIWSNKAPFCMLKECndPPSIING-KIYNKREMYKVGDEIYYVCneHKGvq 120

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1197 FTLIGEQNLHCTTQGTWSHDFPYCNVVHC--PPLlppANGHFIGEP--KEINTKGDiVLLGCLPNYMLTGGDFSVCQADG 1272
Cdd:PHA02639   121 YSLVGNEKITCIQDKSWKPDPPICKMINCrfPAL---QNGYINGIPsnKKFYYKTR-VGFSCKSGFDLVGEKYSTCNINA 196


                   ..
gi 1143474954 1273 EW 1274
Cdd:PHA02639   197 TW 198
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 251-305 2.42e-11

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 60.17  E-value: 2.42e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1143474954  251 CSRPSSPLHGKVVGSSLTY--QSVVTYSCDHGYRLVGQVQRICLAEGIWGGNEPRCE 305
Cdd:cd00033      1 CPPPPVPENGTVTGSKGSYsyGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 1106-1161 6.95e-11

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 58.69  E-value: 6.95e-11
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 1143474954  1106 CLLPIGPTNLQVDLSSPTLFVGTVAQFSCPPGFSVEGSAVSTCLEDATWSHSAPRC 1161
Cdd:smart00032    1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
PHA02831 PHA02831
EEV host range protein; Provisional
 205-363 7.51e-11

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 64.24  E-value: 7.51e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  205 EGDTFEYPHHVKYSCNPGFLLVGSTSrqcsSNGEWTNEPANCKATECSRPSSPLHGKVVGSSLTYQ--SVVTYSCD---- 278
Cdd:PHA02831    36 ENKVYEENENLEYKCNNNFDKVFVTC----NNGSWSTKNMCIGKRNCKDPVTILNGYIKNKKDQYSfgDSVTYACKvnkl 111

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  279 HGYRLVGQVQRICLaEGIWGGNEPRCEEIRCSvLPTLPNGYIEGSETSF--GAVAVFRCLETMTHEGASKAKCMEDGQWS 356
Cdd:PHA02831   112 EKYSIVGNETVKCI-NKQWVPKYPVCKLIRCK-YPALQNGFLNVFEKKFyyGDIVNFKCKKGFILLGSSVSTCDINSIWY 189


                   ....*..
gi 1143474954  357 APIPRCL 363
Cdd:PHA02831   190 PGIPKCV 196
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 193-246 1.07e-10

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 58.31  E-value: 1.07e-10
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 1143474954   193 CPDPGDIENGLREGDTFEYPH--HVKYSCNPGFLLVGSTSRQCSSNGEWTNEPANC 246
Cdd:smart00032    1 CPPPPDIENGTVTSSSGTYSYgdTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 1106-1162 8.60e-10

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 55.55  E-value: 8.60e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1143474954 1106 CLLPIGPTNLQVDLSSPTLFVGTVAQFSCPPGFSVEGSAVSTCLEDATWSHSAPRCV 1162
Cdd:cd00033      1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 251-304 9.85e-10

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 55.61  E-value: 9.85e-10
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 1143474954   251 CSRPSSPLHGKVVGSSLTYQ--SVVTYSCDHGYRLVGQVQRICLAEGIWGGNEPRC 304
Cdd:smart00032    1 CPPPPDIENGTVTSSSGTYSygDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 206-483 2.49e-09

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 59.67  E-value: 2.49e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  206 GDTFEYphhvkySCNPGF--LLVGSTSRQCSSNGeWT--NEpanCKATECSRPSSPLHGKVVGSSLTYQSVVTYSCDHGY 281
Cdd:PHA02927    47 GDTIEY------LCLPGYrkQKMGPIYAKCTGTG-WTlfNQ---CIKRRCPSPRDIDNGQLDIGGVDFGSSITYSCNSGY 116

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  282 RLVGQVQRIC----LAEGIWGGNEPRCEEIRCSVLPTLPNGYIEGSETSFgavavfrcletmthegaskakcmedgqwsa 357
Cdd:PHA02927   117 QLIGESKSYCelgsTGSMVWNPEAPICESVKCQSPPSISNGRHNGYEDFY------------------------------ 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  358 piprclascrvphiqngkirdksegqliASGSKVIVECNKQHEANIDERLICSNSTWSHVPVCSPLSChnwpprvPHARI 437
Cdd:PHA02927   167 ----------------------------TDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDPPTCQIVKC-------PHPTI 211

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*.
gi 1143474954  438 LFSKSSHGSIAKYECNngyhpnrNNQIIKCLYGEWTKDGPPMKCLP 483
Cdd:PHA02927   212 SNGYLSSGFKRSYSYN-------DNVDFKCKYGYKLSGSSSSTCSP 250
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 377-557 3.90e-09

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 59.28  E-value: 3.90e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  377 RDKSEGQL----IASGSKVIVECNKQHEANIDERLICS-NSTWSHV-----PVCSPLSCHNwPPRVPHARILFSKS--SH 444
Cdd:PHA02927    90 RDIDNGQLdiggVDFGSSITYSCNSGYQLIGESKSYCElGSTGSMVwnpeaPICESVKCQS-PPSISNGRHNGYEDfyTD 168

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  445 GSIAKYECNNGYHPNRNNQIIkCLYGEWTKdgpPMKCLPSWCEHPSKTYGTLPGGqillegilgayefqsYIQKVEEGRA 524
Cdd:PHA02927   169 GSVVTYSCNSGYSLIGNSGVL-CSGGEWSD---PPTCQIVKCPHPTISNGYLSSG---------------FKRSYSYNDN 229

                          170       180       190
                   ....*....|....*....|....*....|....
gi 1143474954  525 ISFQCGKGNYLIGPPKATCVNGE-WMPKVsPKCV 557
Cdd:PHA02927   230 VDFKCKYGYKLSGSSSSTCSPGNtWQPEL-PKCV 262
Sushi pfam00084
Sushi repeat (SCR repeat);
309-362 4.76e-09

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 53.66  E-value: 4.76e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1143474954  309 CSVLPTLPNGYIEGS--ETSFGAVAVFRCLETMTHEGASKAKCMEDGQWSAPIPRC 362
Cdd:pfam00084    1 CPPPPDIPNGKVSATknEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
251-304 1.15e-08

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 52.50  E-value: 1.15e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1143474954  251 CSRPSSPLHGKVVGSSLTYQ--SVVTYSCDHGYRLVGQVQRICLAEGIWGGNEPRC 304
Cdd:pfam00084    1 CPPPPDIPNGKVSATKNEYNygASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 1167-1220 1.37e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 52.47  E-value: 1.37e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1143474954 1167 PAVFVNGTrMTVTVTSYRTGGVAHFKCHKGFTLIGEQNLHCTTQGTWSHDFPYC 1220
Cdd:cd00033      4 PPVPENGT-VTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 1167-1220 1.67e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 52.14  E-value: 1.67e-08
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....
gi 1143474954  1167 PAVFVNGTrMTVTVTSYRTGGVAHFKCHKGFTLIGEQNLHCTTQGTWSHDFPYC 1220
Cdd:smart00032    4 PPDIENGT-VTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
PHA02639 PHA02639
EEV host range protein; Provisional
 64-246 1.71e-08

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 57.75  E-value: 1.71e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954   64 CHPLPNIENGFIRTAGD-LRFGSNAEYGCNKGYILVGASQRRC---QANKEWSSSQPVCRLQlKCGPPPEIPfavhDGSS 139
Cdd:PHA02639    22 CDKPDDISNGFITELMEkYEIGKLIEYTCNTDYALIGDRFRTCikdKNNAIWSNKAPFCMLK-ECNDPPSII----NGKI 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  140 FSGE--YDLDAEVAYNCipGYHK---FNAKGLSISKCLLNRknvaQWFGPDLRCKARACPDPG---DIENGLREGDTFEY 211
Cdd:PHA02639    97 YNKRemYKVGDEIYYVC--NEHKgvqYSLVGNEKITCIQDK----SWKPDPPICKMINCRFPAlqnGYINGIPSNKKFYY 170

                          170       180       190
                   ....*....|....*....|....*....|....*
gi 1143474954  212 PHHVKYSCNPGFLLVGSTSRQCSSNGEWTNEPANC 246
Cdd:PHA02639   171 KTRVGFSCKSGFDLVGEKYSTCNINATWFPSIPTC 205
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 309-362 2.07e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 51.69  E-value: 2.07e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1143474954  309 CSVLPTLPNGYIEGSETSF--GAVAVFRCLETMTHEGASKAKCMEDGQWSAPIPRC 362
Cdd:cd00033      1 CPPPPVPENGTVTGSKGSYsyGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTC 56
PHA02639 PHA02639
EEV host range protein; Provisional
 143-304 2.39e-08

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 56.98  E-value: 2.39e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  143 EYDLDAEVAYNCIPGYHKFnakGLSISKCLLNRKNvAQWFGPDLRCKARACPDPGDIENG--LREGDTFEYPHHVKYSCN 220
Cdd:PHA02639    39 KYEIGKLIEYTCNTDYALI---GDRFRTCIKDKNN-AIWSNKAPFCMLKECNDPPSIINGkiYNKREMYKVGDEIYYVCN 114

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  221 P----GFLLVGSTSRQCSSNGEWTNEPANCKATECSRPS---SPLHGKVVGSSLTYQSVVTYSCDHGYRLVGQVQRICLA 293
Cdd:PHA02639   115 EhkgvQYSLVGNEKITCIQDKSWKPDPPICKMINCRFPAlqnGYINGIPSNKKFYYKTRVGFSCKSGFDLVGEKYSTCNI 194

                          170
                   ....*....|.
gi 1143474954  294 EGIWGGNEPRC 304
Cdd:PHA02639   195 NATWFPSIPTC 205
Sushi pfam00084
Sushi repeat (SCR repeat);
193-246 2.54e-08

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 51.35  E-value: 2.54e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1143474954  193 CPDPGDIENGLREGDTFEYPHH--VKYSCNPGFLLVGSTSRQCSSNGEWTNEPANC 246
Cdd:pfam00084    1 CPPPPDIPNGKVSATKNEYNYGasVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 309-362 3.44e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 50.99  E-value: 3.44e-08
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 1143474954   309 CSVLPTLPNGYIEGSETSF--GAVAVFRCLETMTHEGASKAKCMEDGQWSAPIPRC 362
Cdd:smart00032    1 CPPPPDIENGTVTSSSGTYsyGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
PHA02639 PHA02639
EEV host range protein; Provisional
 247-420 4.33e-08

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 56.21  E-value: 4.33e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  247 KATECSRPSSPLHGKVVGSSLTYQ--SVVTYSCDHGYRLVGQVQRICLAE---GIWGGNEPRCEEIRCSVLPTLPNGYIE 321
Cdd:PHA02639    18 KSIYCDKPDDISNGFITELMEKYEigKLIEYTCNTDYALIGDRFRTCIKDknnAIWSNKAPFCMLKECNDPPSIINGKIY 97

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  322 GSETSF--GAVAVFRCLE----TMTHEGASKAKCMEDGQWSAPIPRC-LASCRVPHIQNGKIRDKSEGQLIASGSKVIVE 394
Cdd:PHA02639    98 NKREMYkvGDEIYYVCNEhkgvQYSLVGNEKITCIQDKSWKPDPPICkMINCRFPALQNGYINGIPSNKKFYYKTRVGFS 177

                          170       180
                   ....*....|....*....|....*...
gi 1143474954  395 CNKQHEANIDERLICS-NSTW-SHVPVC 420
Cdd:PHA02639   178 CKSGFDLVGEKYSTCNiNATWfPSIPTC 205
Sushi pfam00084
Sushi repeat (SCR repeat);
1106-1161 6.96e-08

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 50.19  E-value: 6.96e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1143474954 1106 CLLPIGPTNLQVDLSSPTLFVGTVAQFSCPPGFSVEGSAVSTCLEDATWSHSAPRC 1161
Cdd:pfam00084    1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
64-118 2.61e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 48.65  E-value: 2.61e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1143474954   64 CHPLPNIENGFIR-TAGDLRFGSNAEYGCNKGYILVGASQRRCQANKEWSSSQPVC 118
Cdd:pfam00084    1 CPPPPDIPNGKVSaTKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 1285-1342 4.44e-07

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 47.91  E-value: 4.44e-07
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*...
gi 1143474954  1285 CRHPGQPDHGaTTTIAKDYYSIGEKIVFYCPSqNYKLSSDNVLVCISPGQWSRRLPLC 1342
Cdd:smart00032    1 CPPPPDIENG-TVTSSSGTYSYGDTVTYSCDP-GYTLIGSSTITCLENGTWSPPPPTC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 1225-1281 6.02e-07

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 47.52  E-value: 6.02e-07
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*..
gi 1143474954  1225 CPPLLPPANGHFIGEPKEINTkGDIVLLGCLPNYMLTGGDFSVCQADGEWSEIKTKC 1281
Cdd:smart00032    1 CPPPPDIENGTVTSSSGTYSY-GDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 1225-1281 6.52e-07

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 47.46  E-value: 6.52e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1143474954 1225 CPPLLPPANGHFIGEPKEINTkGDIVLLGCLPNYMLTGGDFSVCQADGEWSEIKTKC 1281
Cdd:cd00033      1 CPPPPVPENGTVTGSKGSYSY-GSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTC 56
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 234-365 6.90e-07

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 52.78  E-value: 6.90e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  234 SSNGEWtNEPANCKATECsRPSSPLHGKV--VGSSLTYQSVVTYSCDHGYRLVGQVQRICLAEGiWgGNEPRCEEiRCSv 311
Cdd:PHA02954   114 NGNTSW-NDTVTCPNAEC-QPLQLEHGSCqpVKEKYSFGEHITINCDVGYEVIGASYISCTANS-W-NVIPSCQQ-KCD- 187

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1143474954  312 LPTLPNGYIEGSETSFGAVAVFRCLETMTHEGASKAKCMeDGQWSAPIPRCLAS 365
Cdd:PHA02954   188 IPSLSNGLISGSTFSIGGVIHLSCKSGFTLTGSPSSTCI-DGKWNPVLPICVRS 240
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 1285-1342 1.21e-06

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 46.69  E-value: 1.21e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1143474954 1285 CRHPGQPDHGaTTTIAKDYYSIGEKIVFYCpSQNYKLSSDNVLVCISPGQWSRRLPLC 1342
Cdd:cd00033      1 CPPPPVPENG-TVTGSKGSYSYGSTVTYSC-NEGYTLVGSSTITCTENGGWSPPPPTC 56
PHA02831 PHA02831
EEV host range protein; Provisional
 177-304 1.47e-06

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 51.53  E-value: 1.47e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  177 NVAQWFGPDLRCKARACPDPGDIENGL--REGDTFEYPHHVKYSCNPGFL----LVGSTSRQCSsNGEWTNEPANCKATE 250
Cdd:PHA02831    62 NNGSWSTKNMCIGKRNCKDPVTILNGYikNKKDQYSFGDSVTYACKVNKLekysIVGNETVKCI-NKQWVPKYPVCKLIR 140

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1143474954  251 CSRPSspLHGKVVGS---SLTYQSVVTYSCDHGYRLVGQVQRICLAEGIWGGNEPRC 304
Cdd:PHA02831   141 CKYPA--LQNGFLNVfekKFYYGDIVNFKCKKGFILLGSSVSTCDINSIWYPGIPKC 195
PHA02817 PHA02817
EEV Host range protein; Provisional
 246-362 1.80e-06

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 50.71  E-value: 1.80e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  246 CKATECSRPSSPLHGKVVGSSLTYQ--SVVTYSCDHG-----YRLVGQVQRICLAEGIWGGNEPRCEEIRCSvLPTLPNG 318
Cdd:PHA02817    19 CDLNKCCYPPSIKNGYIYNKKTEYNigSNVTFFCGNNtrgvrYTLVGEKNIICEKDGKWNKEFPVCKIIRCR-FPALQNG 97

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1143474954  319 YIEGSETS----FGAVAVFRCLETMTHEGASKAKCMEDGQWSAPIPRC 362
Cdd:PHA02817    98 FVNGIPDSkkfyYESEVSFSCKPGFVLIGTKYSVCGINSSWIPKVPIC 145
PHA02831 PHA02831
EEV host range protein; Provisional
 407-571 4.64e-06

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 49.99  E-value: 4.64e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  407 LICSNSTWSHVPVC-SPLSCHNwPPRVPHARILFSKS--SHGSIAKYECNNGYHPNRN---NQIIKCLYGEWTKDGPPMK 480
Cdd:PHA02831    59 VTCNNGSWSTKNMCiGKRNCKD-PVTILNGYIKNKKDqySFGDSVTYACKVNKLEKYSivgNETVKCINKQWVPKYPVCK 137

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  481 CLPswCEHPSktygtlpggqiLLEGILGAYEFQSYIqkveeGRAISFQCGKGNYLIGPPKATC-VNGEWMPKVsPKCVS- 558
Cdd:PHA02831   138 LIR--CKYPA-----------LQNGFLNVFEKKFYY-----GDIVNFKCKKGFILLGSSVSTCdINSIWYPGI-PKCVKd 198

                          170
                   ....*....|...
gi 1143474954  559 QTHPMIEGKILWD 571
Cdd:PHA02831   199 KVHNEIQPNYLFD 211
PHA02817 PHA02817
EEV Host range protein; Provisional
 304-421 6.14e-06

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 48.78  E-value: 6.14e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  304 CEEIRCSVLPTLPNGYI--EGSETSFGAVAVFRCLETM-----THEGASKAKCMEDGQWSAPIPRC-LASCRVPHIQNGK 375
Cdd:PHA02817    19 CDLNKCCYPPSIKNGYIynKKTEYNIGSNVTFFCGNNTrgvryTLVGEKNIICEKDGKWNKEFPVCkIIRCRFPALQNGF 98

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1143474954  376 IRDKSEGQLIASGSKVIVECNKQHEANIDERLICS-NSTW-SHVPVCS 421
Cdd:PHA02817    99 VNGIPDSKKFYYESEVSFSCKPGFVLIGTKYSVCGiNSSWiPKVPICS 146
Sushi pfam00084
Sushi repeat (SCR repeat);
1166-1220 6.46e-06

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 44.80  E-value: 6.46e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1143474954 1166 CPAVF-VNGTRMTVTVTSYRTGGVAHFKCHKGFTLIGEQNLHCTTQGTWSHDFPYC 1220
Cdd:pfam00084    1 CPPPPdIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
PHA02817 PHA02817
EEV Host range protein; Provisional
 1181-1274 7.80e-06

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 48.78  E-value: 7.80e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1181 TSYRTGGVAHFKCHKG-----FTLIGEQNLHCTTQGTWSHDFPYCNVVHC--PPLlppANGHFIGEP--KEINTKGDiVL 1251
Cdd:PHA02817    40 TEYNIGSNVTFFCGNNtrgvrYTLVGEKNIICEKDGKWNKEFPVCKIIRCrfPAL---QNGFVNGIPdsKKFYYESE-VS 115

                           90       100
                   ....*....|....*....|...
gi 1143474954 1252 LGCLPNYMLTGGDFSVCQADGEW 1274
Cdd:PHA02817   116 FSCKPGFVLIGTKYSVCGINSSW 138
PHA02817 PHA02817
EEV Host range protein; Provisional
 188-304 1.63e-05

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 47.63  E-value: 1.63e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  188 CKARACPDPGDIENGLREGDTFEYP--HHVKYSCNPG-----FLLVGSTSRQCSSNGEWTNEPANCKATECSRPS---SP 257
Cdd:PHA02817    19 CDLNKCCYPPSIKNGYIYNKKTEYNigSNVTFFCGNNtrgvrYTLVGEKNIICEKDGKWNKEFPVCKIIRCRFPAlqnGF 98

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1143474954  258 LHGKVVGSSLTYQSVVTYSCDHGYRLVGQVQRICLAEGIWGGNEPRC 304
Cdd:PHA02817    99 VNGIPDSKKFYYESEVSFSCKPGFVLIGTKYSVCGINSSWIPKVPIC 145
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 1100-1220 2.45e-05

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 47.73  E-value: 2.45e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1100 IVHEEKCLLPIGPTNLQVDLSSPTLFVGTVAQFSCPPGFSVEGSAVSTClEDATWShSAPRCVAAHCP-AVFVNGTRMTV 1178
Cdd:PHA02927   142 ICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLC-SGGEWS-DPPTCQIVKCPhPTISNGYLSSG 219

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1143474954 1179 TVTSYRTGGVAHFKCHKGFTLIGEQNLHCTTQGTWSHDFPYC 1220
Cdd:PHA02927   220 FKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQPELPKC 261
IgV_1_JAM1-like cd20946
First Ig-like domain of Junctional adhesion molecule-1 (JAM1)and similar domains; a member of ...
 1015-1101 5.78e-05

First Ig-like domain of Junctional adhesion molecule-1 (JAM1)and similar domains; a member of the V-set of IgSF domains; The members here are composed of the first Ig-like domain of Junctional Adhesion Molecule-1 (JAM1)and similar domains. JAM1 is an immunoglobulin superfamily (IgSF) protein with two Ig-like domains in its extracellular region; it plays a role in the formation of endothelial and epithelial tight junction and acts as a receptor for mammalian reovirus sigma-1. The IgSF is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. The two sheets are linked together by a conserved disulfide bond between B strand and F strand. IgSF domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. The first Ig-like domain of JAM1 is a member of the V-set Ig domains, having A-B-E-D strands in one beta-sheet and A'-G-F-C-C'-C" in the other.


Pssm-ID: 409538  Cd Length: 102  Bit Score: 43.29  E-value: 5.78e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1015 SSKGELIVSRAANVKLACLTEKVASDPI--WKVTSTYRSYPTQWTKAKTGDYDD---IDGFEISIASVQPFDSGMLHC-- 1087
Cdd:cd20946      4 SSQQVVTVVENQEVILSCKTPKKTSSPRveWKKLQRDVTFVVFQNNKIQGDYKGraeILGTNITIKNVTRSDSGKYRCev 83

                           90
                   ....*....|....*...
gi 1143474954 1088 VLPNGARN----SIKLIV 1101
Cdd:cd20946     84 SARSDGQNlgevTVTLEV 101
Sushi pfam00084
Sushi repeat (SCR repeat);
1285-1342 1.43e-04

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 40.95  E-value: 1.43e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1143474954 1285 CRHPGQPDHGATTTIaKDYYSIGEKIVFYCpSQNYKLSSDNVLVCISPGQWSRRLPLC 1342
Cdd:pfam00084    1 CPPPPDIPNGKVSAT-KNEYNYGASVSYEC-DPGYRLVGSPTITCQEDGTWSPPFPEC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 425-481 2.93e-04

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 40.14  E-value: 2.93e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  425 CHNwPPRVPHARILFSKS--SHGSIAKYECNNGYHPnRNNQIIKCL-YGEWTkdGPPMKC 481
Cdd:cd00033      1 CPP-PPVPENGTVTGSKGsySYGSTVTYSCNEGYTL-VGSSTITCTeNGGWS--PPPPTC 56
PHA02817 PHA02817
EEV Host range protein; Provisional
 1138-1220 3.79e-04

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 43.39  E-value: 3.79e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1138 FSVEGSAVSTCLEDATWSHSAPRCVAAHC--PAV---FVNGtrMTVTVTSYRTGGVAhFKCHKGFTLIGEQNLHCTTQGT 1212
Cdd:PHA02817    61 YTLVGEKNIICEKDGKWNKEFPVCKIIRCrfPALqngFVNG--IPDSKKFYYESEVS-FSCKPGFVLIGTKYSVCGINSS 137


                   ....*...
gi 1143474954 1213 WSHDFPYC 1220
Cdd:PHA02817   138 WIPKVPIC 145
PHA02817 PHA02817
EEV Host range protein; Provisional
 118-239 4.23e-04

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 43.39  E-value: 4.23e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  118 CRLQLKCGPPPEIPFAVHDGSSfsgEYDLDAEVAYNCipgyhKFNAKGLSISkcLLNRKNV-----AQWFGPDLRCKARA 192
Cdd:PHA02817    19 CDLNKCCYPPSIKNGYIYNKKT---EYNIGSNVTFFC-----GNNTRGVRYT--LVGEKNIicekdGKWNKEFPVCKIIR 88

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1143474954  193 CPDPG---DIENGLREGDTFEYPHHVKYSCNPGFLLVGSTSRQCSSNGEW 239
Cdd:PHA02817    89 CRFPAlqnGFVNGIPDSKKFYYESEVSFSCKPGFVLIGTKYSVCGINSSW 138
PHA02639 PHA02639
EEV host range protein; Provisional
 1138-1220 1.18e-03

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 42.73  E-value: 1.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1138 FSVEGSAVSTCLEDATWSHSAPRCVAAHC--PAV---FVNGTRMTVTVTsYRTGgvAHFKCHKGFTLIGEQNLHCTTQGT 1212
Cdd:PHA02639   121 YSLVGNEKITCIQDKSWKPDPPICKMINCrfPALqngYINGIPSNKKFY-YKTR--VGFSCKSGFDLVGEKYSTCNINAT 197


                   ....*...
gi 1143474954 1213 WSHDFPYC 1220
Cdd:PHA02639   198 WFPSIPTC 205
PHA02639 PHA02639
EEV host range protein; Provisional
 1176-1343 2.25e-03

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 41.57  E-value: 2.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1176 MTVTVTSYRTGGVAHFKCHKGFTLIGEQNLHC---TTQGTWSHDFPYCNVVHC--PPLLppANGHfIGEPKEINTKGDIV 1250
Cdd:PHA02639    33 ITELMEKYEIGKLIEYTCNTDYALIGDRFRTCikdKNNAIWSNKAPFCMLKECndPPSI--INGK-IYNKREMYKVGDEI 109

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1251 LLGCLPN----YMLTGGDFSVCQADGEWSEIKTKCDGY-CRHPGQPDHGATTTIAKDYYSIGEKIVFYCPSqNYKLSSDN 1325
Cdd:PHA02639   110 YYVCNEHkgvqYSLVGNEKITCIQDKSWKPDPPICKMInCRFPALQNGYINGIPSNKKFYYKTRVGFSCKS-GFDLVGEK 188

                          170
                   ....*....|....*...
gi 1143474954 1326 VLVCISPGQWSRRLPLCL 1343
Cdd:PHA02639   189 YSTCNINATWFPSIPTCV 206
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 309-557 3.07e-03

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 41.23  E-value: 3.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  309 CSVlPTLPNGYIEGSETSFG--AVAVFRClETMTHEGASKAKCMEDgQWSAPIP---RCLASCRVPHIQNGKIRD-KSEG 382
Cdd:PHA02954    21 CTV-PTMNNAKLTSTETSFNdkQKVTFTC-DSGYYSLDPNAVCETD-KWKYENPckkMCTVSDYVSELYDKPLYEvNSTI 97

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  383 QLIASGSKVIVECNKQHeaniderlicSNSTWSHVPVCSPLSCHNWPPRVPHARILFSKSSHGSIAKYECNNGYHPnRNN 462
Cdd:PHA02954    98 TLICKDETKYFRCEEKN----------GNTSWNDTVTCPNAECQPLQLEHGSCQPVKEKYSFGEHITINCDVGYEV-IGA 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954  463 QIIKCLYGEWTkdgppmkCLPSW---CEHPSKTYGTLPGGQILLEGIlgayefqsyiqkveegraISFQCGKGNYLIGPP 539
Cdd:PHA02954   167 SYISCTANSWN-------VIPSCqqkCDIPSLSNGLISGSTFSIGGV------------------IHLSCKSGFTLTGSP 221

                          250
                   ....*....|....*...
gi 1143474954  540 KATCVNGEWMPkVSPKCV 557
Cdd:PHA02954   222 SSTCIDGKWNP-VLPICV 238
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 425-481 3.83e-03

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 36.74  E-value: 3.83e-03
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954   425 CHNwPPRVPHARILFSKS--SHGSIAKYECNNGYHPNRNNqIIKCL-YGEWTkdGPPMKC 481
Cdd:smart00032    1 CPP-PPDIENGTVTSSSGtySYGDTVTYSCDPGYTLIGSS-TITCLeNGTWS--PPPPTC 56
PHA02817 PHA02817
EEV Host range protein; Provisional
 1220-1346 4.36e-03

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 40.31  E-value: 4.36e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1220 CNVVHC-----PPLLPPA--NGhFIGEPKEINTKGDIVLLGCLPN-----YMLTGGDFSVCQADGEWSEIKTKCDGY-CR 1286
Cdd:PHA02817    12 CNKVYSlcdlnKCCYPPSikNG-YIYNKKTEYNIGSNVTFFCGNNtrgvrYTLVGEKNIICEKDGKWNKEFPVCKIIrCR 90

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1143474954 1287 HP--------GQPDHgatttiAKDYYSigEKIVFYCpSQNYKLSSDNVLVCISPGQWSRRLPLCLPSN 1346
Cdd:PHA02817    91 FPalqngfvnGIPDS------KKFYYE--SEVSFSC-KPGFVLIGTKYSVCGINSSWIPKVPICSRDN 149
Sushi pfam00084
Sushi repeat (SCR repeat);
1225-1281 4.57e-03

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 36.71  E-value: 4.57e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1143474954 1225 CPPLLPPANGHFIGEpKEINTKGDIVLLGCLPNYMLTGGDFSVCQADGEWSEIKTKC 1281
Cdd:pfam00084    1 CPPPPDIPNGKVSAT-KNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
PHA02831 PHA02831
EEV host range protein; Provisional
 1131-1281 5.25e-03

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 40.36  E-value: 5.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954 1131 QFSCPPGFSvegSAVSTClEDATWShSAPRCVA-AHC--PAVFVNGTrMTVTVTSYRTGGVAHFKCH----KGFTLIGEQ 1203
Cdd:PHA02831    47 EYKCNNNFD---KVFVTC-NNGSWS-TKNMCIGkRNCkdPVTILNGY-IKNKKDQYSFGDSVTYACKvnklEKYSIVGNE 120

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1143474954 1204 NLHCTtQGTWSHDFPYCNVVHCPplLPPANGHFIGEPKEINTKGDIVLLGCLPNYMLTGGDFSVCQADGEWSEIKTKC 1281
Cdd:PHA02831   121 TVKCI-NKQWVPKYPVCKLIRCK--YPALQNGFLNVFEKKFYYGDIVNFKCKKGFILLGSSVSTCDINSIWYPGIPKC 195
PHA02831 PHA02831
EEV host range protein; Provisional
 48-174 6.11e-03

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 40.36  E-value: 6.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143474954   48 MCDGEcgLSCVNPIAmchplpnIENGFIRTAGD-LRFGSNAEYGC--NK--GYILVGASQRRCqANKEWSSSQPVCRLqL 122
Cdd:PHA02831    71 MCIGK--RNCKDPVT-------ILNGYIKNKKDqYSFGDSVTYACkvNKleKYSIVGNETVKC-INKQWVPKYPVCKL-I 139

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1143474954  123 KCGPPpeipfAVHDG--SSFSGEYDLDAEVAYNCIPGyhkFNAKGLSISKCLLN 174
Cdd:PHA02831   140 RCKYP-----ALQNGflNVFEKKFYYGDIVNFKCKKG---FILLGSSVSTCDIN 185
WAP pfam00095
WAP-type (Whey Acidic Protein) 'four-disulfide core'; WAP belongs to the group of Elafin or ...
 18-60 6.52e-03

WAP-type (Whey Acidic Protein) 'four-disulfide core'; WAP belongs to the group of Elafin or elastase-specific inhibitors.


Pssm-ID: 459672 [Multi-domain]  Cd Length: 42  Bit Score: 35.86  E-value: 6.52e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1143474954   18 SCPEVTLSQRpkhCKKECIADEDCKRNKRCmCDGECGLSCVNP 60
Cdd:pfam00095    4 CCPRLGARGC---CRSCCSSDDDCPGRQKC-CSNGCGSVCVPP 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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