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Conserved domains on  [gi|1063712089|ref|NP_001327265|]
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wall-associated receptor kinase carboxy-terminal protein [Arabidopsis thaliana]

Protein Classification

receptor-like serine/threonine-protein kinase( domain architecture ID 10622437)

receptor-like serine/threonine-protein kinase is a transmembrane protein with an N-terminal extracellular domain and a C-terminal intracellular kinase that catalyzes the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates; similar to Arabidopsis thaliana LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like proteins

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GUB_WAK_bind pfam13947
Wall-associated receptor kinase galacturonan-binding; This cysteine-rich GUB_WAK_bind domain ...
 31-90 8.23e-08

Wall-associated receptor kinase galacturonan-binding; This cysteine-rich GUB_WAK_bind domain is the extracellular part of this serine/threonine kinase that binds to the cell-wall pectins.


:

Pssm-ID: 464052  Cd Length: 64  Bit Score: 48.05  E-value: 8.23e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1063712089  31 CRTLCGNIPINYPFGIDG---GCGSPQYRgmFNC--STDLYFTTP-SGSYKVQSIDYEKKTMVIFD 90
Cdd:pfam13947   1 CSPSCGNVNISYPFWLGNrppYCGYPGFE--LSCndNNTPILTIPsSGNYRVLNINYENQTIRVAD 64
WAK_assoc super family cl16841
Wall-associated receptor kinase C-terminal; This WAK_assoc domain is cysteine-rich and lies ...
 222-259 1.21e-05

Wall-associated receptor kinase C-terminal; This WAK_assoc domain is cysteine-rich and lies C-terminal to the binding domain, GUB_WAK_bind, pfam13947.


The actual alignment was detected with superfamily member pfam14380:

Pssm-ID: 464161  Cd Length: 96  Bit Score: 42.93  E-value: 1.21e-05
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1063712089 222 GIELSYSVTEIGCDRCRKSGGTCGFDAETEIFLCQCSG 259
Cdd:pfam14380  58 GFELGWNRDSSDCSECEDSGGRCGYNQTSEQFGCFCSD 95
 
Name Accession Description Interval E-value
GUB_WAK_bind pfam13947
Wall-associated receptor kinase galacturonan-binding; This cysteine-rich GUB_WAK_bind domain ...
 31-90 8.23e-08

Wall-associated receptor kinase galacturonan-binding; This cysteine-rich GUB_WAK_bind domain is the extracellular part of this serine/threonine kinase that binds to the cell-wall pectins.


Pssm-ID: 464052  Cd Length: 64  Bit Score: 48.05  E-value: 8.23e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1063712089  31 CRTLCGNIPINYPFGIDG---GCGSPQYRgmFNC--STDLYFTTP-SGSYKVQSIDYEKKTMVIFD 90
Cdd:pfam13947   1 CSPSCGNVNISYPFWLGNrppYCGYPGFE--LSCndNNTPILTIPsSGNYRVLNINYENQTIRVAD 64
WAK_assoc pfam14380
Wall-associated receptor kinase C-terminal; This WAK_assoc domain is cysteine-rich and lies ...
 222-259 1.21e-05

Wall-associated receptor kinase C-terminal; This WAK_assoc domain is cysteine-rich and lies C-terminal to the binding domain, GUB_WAK_bind, pfam13947.


Pssm-ID: 464161  Cd Length: 96  Bit Score: 42.93  E-value: 1.21e-05
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1063712089 222 GIELSYSVTEIGCDRCRKSGGTCGFDAETEIFLCQCSG 259
Cdd:pfam14380  58 GFELGWNRDSSDCSECEDSGGRCGYNQTSEQFGCFCSD 95
 
Name Accession Description Interval E-value
GUB_WAK_bind pfam13947
Wall-associated receptor kinase galacturonan-binding; This cysteine-rich GUB_WAK_bind domain ...
 31-90 8.23e-08

Wall-associated receptor kinase galacturonan-binding; This cysteine-rich GUB_WAK_bind domain is the extracellular part of this serine/threonine kinase that binds to the cell-wall pectins.


Pssm-ID: 464052  Cd Length: 64  Bit Score: 48.05  E-value: 8.23e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1063712089  31 CRTLCGNIPINYPFGIDG---GCGSPQYRgmFNC--STDLYFTTP-SGSYKVQSIDYEKKTMVIFD 90
Cdd:pfam13947   1 CSPSCGNVNISYPFWLGNrppYCGYPGFE--LSCndNNTPILTIPsSGNYRVLNINYENQTIRVAD 64
WAK_assoc pfam14380
Wall-associated receptor kinase C-terminal; This WAK_assoc domain is cysteine-rich and lies ...
 222-259 1.21e-05

Wall-associated receptor kinase C-terminal; This WAK_assoc domain is cysteine-rich and lies C-terminal to the binding domain, GUB_WAK_bind, pfam13947.


Pssm-ID: 464161  Cd Length: 96  Bit Score: 42.93  E-value: 1.21e-05
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1063712089 222 GIELSYSVTEIGCDRCRKSGGTCGFDAETEIFLCQCSG 259
Cdd:pfam14380  58 GFELGWNRDSSDCSECEDSGGRCGYNQTSEQFGCFCSD 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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