|
Name |
Accession |
Description |
Interval |
E-value |
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
377-903 |
5.51e-65 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 237.05 E-value: 5.51e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 377 KIPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFTiFPIPTmvhnlqifdfsannigkfpdkmdHAL 456
Cdd:PLN00113 84 KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT-GSIPR-----------------------GSI 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 457 PNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSfVTGCVSIMFLKLSHNKFSGRfLPRET-NFPSLDVL 535
Cdd:PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQ-IPRELgQMKSLKWI 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 536 RMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFS 615
Cdd:PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 616 GALPSHVdSELGIYMFLH--NNNFTGPIPDTL--LKSVQILDLRNNKLSGSIPQ-FDDTQSINILLLKGNNLTGSIPREL 690
Cdd:PLN00113 298 GEIPELV-IQLQNLEILHlfSNNFTGKIPVALtsLPRLQVLQLWSNKFSGEIPKnLGKHNNLTVLDLSTNNLTGEIPEGL 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 691 CDLSNVRLLDLSDNKLNGVIPSCLS---NLSFGRLQEDAMALNIPPSFLQTSLEMEL-YKSTFLVDKIEVDRSTYQETEI 766
Cdd:PLN00113 377 CSSGNLFKLILFSNSLEGEIPKSLGacrSLRRVRLQDNSFSGELPSEFTKLPLVYFLdISNNNLQGRINSRKWDMPSLQM 456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 767 KFAAKQRY-----DSYSG---------RSEFSEGI------LRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLL 826
Cdd:PLN00113 457 LSLARNKFfgglpDSFGSkrlenldlsRNQFSGAVprklgsLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1063704824 827 GSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGRQFNTFEEESYLGNPLLCGPPTS 903
Cdd:PLN00113 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTT 613
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
460-878 |
1.54e-52 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 199.69 E-value: 1.54e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 460 VRLNGSNngFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRF----------------- 522
Cdd:PLN00113 74 IDLSGKN--ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIprgsipnletldlsnnm 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 523 ----LPRETN-FPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPS 597
Cdd:PLN00113 152 lsgeIPNDIGsFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 598 LLGMPFLSFLDLSGNQFSGALPSHVDSELGI-YMFLHNNNFTGPIPDTL--LKSVQILDLRNNKLSGSIPQF-DDTQSIN 673
Cdd:PLN00113 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLqYLFLYQNKLSGPIPPSIfsLQKLISLDLSDNSLSGEIPELvIQLQNLE 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 674 ILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCL---SNLSFGRLQEDAMALNIPPSFLQTSlemELYK---- 746
Cdd:PLN00113 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLgkhNNLTVLDLSTNNLTGEIPEGLCSSG---NLFKlilf 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 747 STFLVDKIEVDRSTYQETEikfAAKQRYDSYSGR--SEFSEgiLRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNS 824
Cdd:PLN00113 389 SNSLEGEIPKSLGACRSLR---RVRLQDNSFSGElpSEFTK--LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1063704824 825 LLGSIPSSFSKlIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIP 878
Cdd:PLN00113 464 FFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
12-620 |
1.89e-48 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 186.98 E-value: 1.89e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 12 CQYLIWVMLLLGQLHGCTSciEKEREALLELKKylmsrSRESGLDYvLPTWtnDTKSDCCQWDGIKCNRTSG-RVIELSV 90
Cdd:PLN00113 9 CPYLIFMLFFLFLNFSMLH--AEELELLLSFKS-----SINDPLKY-LSNW--NSSADVCLWQGITCNNSSRvVSIDLSG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 91 GDMYFKESSP---------LNLS-----------LLHPFEEVRSLNLSTegyNEF-----NGFFDDVEG----------- 134
Cdd:PLN00113 79 KNISGKISSAifrlpyiqtINLSnnqlsgpipddIFTTSSSLRYLNLSN---NNFtgsipRGSIPNLETldlsnnmlsge 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 135 -YRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKgLKDLTNLELLDLRANKLNGSM-QELIH 212
Cdd:PLN00113 156 iPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEIpYEIGG 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 213 LKKLKALDLSSNKFSSSMElQELQNLINLEVLGLAQNHVDGPIPIEVFcKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRV 292
Cdd:PLN00113 235 LTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 293 LDLSSNQLSGDLPSSFSSLESLEYLSLSDNNFDGSFSLNpLTNLTNLKLFKLSSRSHTiqvkmestwqpnfqlsvvvlrf 372
Cdd:PLN00113 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN-LGKHNNLTVLDLSTNNLT---------------------- 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 373 cslEKIPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNpELEVLQLQNNSFTifpiptmvhnlqifdfsanniGKFPDKM 452
Cdd:PLN00113 370 ---GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR-SLRRVRLQDNSFS---------------------GELPSEF 424
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 453 DhALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFvtGCVSIMFLKLSHNKFSGRFLPRETNFPSL 532
Cdd:PLN00113 425 T-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLSRNQFSGAVPRKLGSLSEL 501
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 533 DVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGN 612
Cdd:PLN00113 502 MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581
|
....*...
gi 1063704824 613 QFSGALPS 620
Cdd:PLN00113 582 HLHGSLPS 589
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
551-880 |
2.16e-33 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 139.21 E-value: 2.16e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 551 SNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPF-LSFLDLSgnqfsgalpshvdselgiy 629
Cdd:PLN00113 66 NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSsLRYLNLS------------------- 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 630 mflhNNNFTGPIPDTLLKSVQILDLRNNKLSGSIPQ-FDDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNG 708
Cdd:PLN00113 127 ----NNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNdIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 709 VIPSCLSnlsfgrlqedamalnippsflqtslEMELYKSTFLvdkievdrstyqeteikfaakqRYDSYSGRSEFSEGIL 788
Cdd:PLN00113 203 QIPRELG-------------------------QMKSLKWIYL----------------------GYNNLSGEIPYEIGGL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 789 RLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDV 868
Cdd:PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315
|
330
....*....|..
gi 1063704824 869 SSNNLSGIIPQG 880
Cdd:PLN00113 316 FSNNFTGKIPVA 327
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
793-906 |
8.88e-20 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 94.50 E-value: 8.88e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 793 GMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNN 872
Cdd:PLN03150 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1063704824 873 LSGIIP--------QGRQFNtfeeesYLGNPLLCGPPTSRSC 906
Cdd:PLN03150 502 LSGRVPaalggrllHRASFN------FTDNAGLCGIPGLRAC 537
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
95-450 |
1.25e-16 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 83.44 E-value: 1.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 95 FKESSPLNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVEGYRSLSGLRNLKIMDLSTNyfnystfPFLNAATSLTTLILT 174
Cdd:COG4886 49 LTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN-------EELSNLTNLESLDLS 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 175 YNEMDGPFPikGLKDLTNLELLDLRANKLNGSMQELIHLKKLKALDLSSNKFSSsmeL-QELQNLINLEVLGLAQNHVDg 253
Cdd:COG4886 122 GNQLTDLPE--ELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTD---LpEELGNLTNLKELDLSNNQIT- 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 254 PIPiEVFCKLKNLRDLDLKGNHfVGQIPLCLGSLKKLRVLDLSSNQLSgDLPSSFSSLESLeYLSLSDNNFDgsfSLNPL 333
Cdd:COG4886 196 DLP-EPLGNLTNLEELDLSGNQ-LTDLPEPLANLTNLETLDLSNNQLT-DLPELGNLTNLE-ELDLSNNQLT---DLPPL 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 334 TNLTNLKLFKLSSRSHTIQVKMESTWQPNFQLSVVVLRFCSLEKIPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPEL 413
Cdd:COG4886 269 ANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLA 348
|
330 340 350
....*....|....*....|....*....|....*..
gi 1063704824 414 EVLQLQNNSFTIFPIPTMVHNLQIFDFSANNIGKFPD 450
Cdd:COG4886 349 LLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALL 385
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
143-493 |
2.35e-16 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 82.67 E-value: 2.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 143 NLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGLKDLTNLELLDLRANKLNGSMQELIHLKKLKALDLS 222
Cdd:COG4886 25 ILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLS 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 223 SNKfsssmelqELQNLINLEVLGLAQNHVDGpIPIEvFCKLKNLRDLDLKGNHFvGQIPLCLGSLKKLRVLDLSSNQLSg 302
Cdd:COG4886 105 GNE--------ELSNLTNLESLDLSGNQLTD-LPEE-LANLTNLKELDLSNNQL-TDLPEPLGNLTNLKSLDLSNNQLT- 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 303 DLPSSFSSLESLEYLSLSDNNFDgSFSlNPLTNLTNLKLFKLSSrshtiqvkmestwqpnfqlsvvvlrfCSLEKIPSFL 382
Cdd:COG4886 173 DLPEELGNLTNLKELDLSNNQIT-DLP-EPLGNLTNLEELDLSG--------------------------NQLTDLPEPL 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 383 LYQKKLRLVDLSSNNLSgNIPTwlLTNNPELEVLQLQNNSFTIFPIPTMVHNLQIFDFSANNIGKFPDKMDHALPNLVRL 462
Cdd:COG4886 225 ANLTNLETLDLSNNQLT-DLPE--LGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSL 301
|
330 340 350
....*....|....*....|....*....|.
gi 1063704824 463 NGSNNGFQGYFPTSIGEMKNISFLDLSYNNF 493
Cdd:COG4886 302 LLLLLLLNLLELLILLLLLTTLLLLLLLLKG 332
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
316-744 |
3.76e-15 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 78.82 E-value: 3.76e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 316 YLSLSDNNFDGSFSLNPLTNLTNLKLFKLSSRSHTIQVKMESTWQPNFQLSVVVLRFCSLEKIPSFLLYQKKLRLVDLSS 395
Cdd:COG4886 1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 396 NNLSGNIPTWLLTNNPELEVLQLQNNSFTifpipTMVHNLQIFDFSANNIGKFPDKMDHaLPNLVRLNGSNNGFQgYFPT 475
Cdd:COG4886 81 LLSLLLLGLTDLGDLTNLTELDLSGNEEL-----SNLTNLESLDLSGNQLTDLPEELAN-LTNLKELDLSNNQLT-DLPE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 476 SIGEMKNISFLDLSYNNFSGkLPRSFvTGCVSIMFLKLSHNKFSgrFLPRE-TNFPSLDVLRMDNNLFTgNIGGGLSNST 554
Cdd:COG4886 154 PLGNLTNLKSLDLSNNQLTD-LPEEL-GNLTNLKELDLSNNQIT--DLPEPlGNLTNLEELDLSGNQLT-DLPEPLANLT 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 555 MLRILDMSNNGLSgAIPrWLFEFPYLDYVLISNNFLEGTipPSLLGMPFLSFLDLSGNQFSGALPSHVDSELGIYMFLHN 634
Cdd:COG4886 229 NLETLDLSNNQLT-DLP-ELGNLTNLEELDLSNNQLTDL--PPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLL 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 635 NNFTGPIPDTLLKSVQILDLRNNKLSGSIPQFDDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCL 714
Cdd:COG4886 305 LLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLAL 384
|
410 420 430
....*....|....*....|....*....|
gi 1063704824 715 SNLSFGRLQEDAMALNIPPSFLQTSLEMEL 744
Cdd:COG4886 385 LLLTLLLLLLTTTAGVLLLTLALLDAVNTE 414
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
360-750 |
8.43e-14 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 74.58 E-value: 8.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 360 QPNFQLSVVVLRFCSLEKIPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFTIFPIPTMVHNLQIFD 439
Cdd:COG4886 2 LLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 440 FSANNIGkfpDKMDHALPNLVRLNGSNNgfqgyfpTSIGEMKNISFLDLSYNNFSgKLPRSFvTGCVSIMFLKLSHNKFS 519
Cdd:COG4886 82 LSLLLLG---LTDLGDLTNLTELDLSGN-------EELSNLTNLESLDLSGNQLT-DLPEEL-ANLTNLKELDLSNNQLT 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 520 grFLPRE-TNFPSLDVLRMDNNLFTGnIGGGLSNSTMLRILDMSNNGLSgAIPRWLFEFPYLDYVLISNNFLEgTIPPSL 598
Cdd:COG4886 150 --DLPEPlGNLTNLKSLDLSNNQLTD-LPEELGNLTNLKELDLSNNQIT-DLPEPLGNLTNLEELDLSGNQLT-DLPEPL 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 599 LGMPFLSFLDLSGNQFSgALPSHVDSELGIYMFLHNNNFTGPIPDTLLKSVQILDLRNNKLSG-SIPQFDDTQSINILLL 677
Cdd:COG4886 225 ANLTNLETLDLSNNQLT-DLPELGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTDlKLKELELLLGLNSLLL 303
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063704824 678 KGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRLQEDAMALNIPPSFLQTSLEMELYKSTFL 750
Cdd:COG4886 304 LLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLE 376
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
284-696 |
8.43e-14 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 74.58 E-value: 8.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 284 LGSLKKLRVLDLSSNQLSGDLPSSFSSLESLEYLSLSDNNFDGSFSLNPLTNLTNLKLFKLSSRSHTIQVKMESTWQPNF 363
Cdd:COG4886 14 LLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLG 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 364 QL-SVVVLRFCSLEKIPSFllyqKKLRLVDLSSNNLSgNIPTWLlTNNPELEVLQLQNNSFTIFPIP-TMVHNLQIFDFS 441
Cdd:COG4886 94 DLtNLTELDLSGNEELSNL----TNLESLDLSGNQLT-DLPEEL-ANLTNLKELDLSNNQLTDLPEPlGNLTNLKSLDLS 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 442 ANNIGKFPDKMDHaLPNLVRLNGSNNGFQgYFPTSIGEMKNISFLDLSYNNFSgKLPRSFvTGCVSIMFLKLSHNKFSGr 521
Cdd:COG4886 168 NNQLTDLPEELGN-LTNLKELDLSNNQIT-DLPEPLGNLTNLEELDLSGNQLT-DLPEPL-ANLTNLETLDLSNNQLTD- 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 522 fLPRETNFPSLDVLRMDNNLFTGniGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGM 601
Cdd:COG4886 243 -LPELGNLTNLEELDLSNNQLTD--LPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLL 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 602 PFLSFLDLSGNQFSGALPSHVDSELGIYMFLHNNNFTGPIPDTLLKSVQILDLRNNKLSGSIPQFDDTQSINILLLKGNN 681
Cdd:COG4886 320 LTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAG 399
|
410
....*....|....*
gi 1063704824 682 LTGSIPRELCDLSNV 696
Cdd:COG4886 400 VLLLTLALLDAVNTE 414
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
169-495 |
3.03e-13 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 73.04 E-value: 3.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 169 TTLILTYNEMDGPFPIKGLKDLTNLELLDLRANKLNGSMQELIHLKKLKALDLSSNKFSSSMELQELQNLINLEVLGLAQ 248
Cdd:COG4886 1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 249 NHVDGPIPIEVFCKLKNLRDLDLKGNHFvgqiplcLGSLKKLRVLDLSSNQLSgDLPSSFSSLESLEYLSLSDNNFdgSF 328
Cdd:COG4886 81 LLSLLLLGLTDLGDLTNLTELDLSGNEE-------LSNLTNLESLDLSGNQLT-DLPEELANLTNLKELDLSNNQL--TD 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 329 SLNPLTNLTNLKLFKLSSrshtiqvkmestwqpnfqlsvvvlrfCSLEKIPSFLLYQKKLRLVDLSSNNLSgNIPTWlLT 408
Cdd:COG4886 151 LPEPLGNLTNLKSLDLSN--------------------------NQLTDLPEELGNLTNLKELDLSNNQIT-DLPEP-LG 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 409 NNPELEVLQLQNNSFTIFPIP-TMVHNLQIFDFSANNIGKFPDKMDhaLPNLVRLNGSNNGFQGYfpTSIGEMKNISFLD 487
Cdd:COG4886 203 NLTNLEELDLSGNQLTDLPEPlANLTNLETLDLSNNQLTDLPELGN--LTNLEELDLSNNQLTDL--PPLANLTNLKTLD 278
|
....*...
gi 1063704824 488 LSYNNFSG 495
Cdd:COG4886 279 LSNNQLTD 286
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
559-664 |
2.95e-11 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 67.15 E-value: 2.95e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 559 LDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGAlpshvdselgiymflhnnnft 638
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS--------------------- 481
|
90 100
....*....|....*....|....*...
gi 1063704824 639 gpIPDTL--LKSVQILDLRNNKLSGSIP 664
Cdd:PLN03150 482 --IPESLgqLTSLRILNLNGNSLSGRVP 507
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
535-876 |
7.82e-11 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 65.34 E-value: 7.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 535 LRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQF 614
Cdd:COG4886 1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 615 SGALPSHVDSELGIYMFLHNNNFTGPIPDTLLKSVQILDLRNNKLSGSIPQFDDTQSINILLLKGNNLTgSIPRELCDLS 694
Cdd:COG4886 81 LLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLT-DLPEPLGNLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 695 NVRLLDLSDNKLNGvIPSCLSNLSfgRLQEdamalnippsflqtslemelykstflvdkievdrstyqeteikfaakqry 774
Cdd:COG4886 160 NLKSLDLSNNQLTD-LPEELGNLT--NLKE-------------------------------------------------- 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 775 dsysgrsefsegilrlmygMDLSNNELSgVIPTELGDLLKLRTLNLSHNSLlGSIPSSFSKLIDVESLDLSHNMLQgSIP 854
Cdd:COG4886 187 -------------------LDLSNNQIT-DLPEPLGNLTNLEELDLSGNQL-TDLPEPLANLTNLETLDLSNNQLT-DLP 244
|
330 340
....*....|....*....|..
gi 1063704824 855 QLlSSLTSLAVFDVSSNNLSGI 876
Cdd:COG4886 245 EL-GNLTNLEELDLSNNQLTDL 265
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
632-714 |
1.13e-08 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 59.06 E-value: 1.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 632 LHNNNFTGPIPDTL--LKSVQILDLRNNKLSGSIP-QFDDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNG 708
Cdd:PLN03150 425 LDNQGLRGFIPNDIskLRHLQSINLSGNSIRGNIPpSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504
|
....*.
gi 1063704824 709 VIPSCL 714
Cdd:PLN03150 505 RVPAAL 510
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
133-301 |
2.63e-08 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 56.59 E-value: 2.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 133 EGYRSLSGLRNLkimDLSTNYFNYSTFPFLNAATSLTTL---ILTYNEMD---GPFPIKGLKDLT-NLELLDLRANKL-N 204
Cdd:cd00116 75 QGLTKGCGLQEL---DLSDNALGPDGCGVLESLLRSSSLqelKLNNNGLGdrgLRLLAKGLKDLPpALEKLVLGRNRLeG 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 205 GSMQELihlkklkALDLSSNKfsssmelqelqnliNLEVLGLAQNHVDGPiPIEVFCK----LKNLRDLDLKGNHF---- 276
Cdd:cd00116 152 ASCEAL-------AKALRANR--------------DLKELNLANNGIGDA-GIRALAEglkaNCNLEVLDLNNNGLtdeg 209
|
170 180
....*....|....*....|....*
gi 1063704824 277 VGQIPLCLGSLKKLRVLDLSSNQLS 301
Cdd:cd00116 210 ASALAETLASLKSLEVLNLGDNNLT 234
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
532-638 |
6.60e-08 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 56.36 E-value: 6.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 532 LDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSG 611
Cdd:PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499
|
90 100
....*....|....*....|....*....
gi 1063704824 612 NQFSGALPSHVDSELgiymfLHNN--NFT 638
Cdd:PLN03150 500 NSLSGRVPAALGGRL-----LHRAsfNFT 523
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
244-326 |
1.81e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 55.21 E-value: 1.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 244 LGLAQNHVDGPIPIEVfCKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGDLPSSFSSLESLEYLSLSDNN 323
Cdd:PLN03150 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501
|
...
gi 1063704824 324 FDG 326
Cdd:PLN03150 502 LSG 504
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
446-521 |
3.36e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 54.05 E-value: 3.36e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1063704824 446 GKFPDKMDhALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSfVTGCVSIMFLKLSHNKFSGR 521
Cdd:PLN03150 432 GFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNGNSLSGR 505
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
814-873 |
4.13e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 47.90 E-value: 4.13e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 814 KLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNL 873
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
232-305 |
6.78e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 53.28 E-value: 6.78e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1063704824 232 LQELQNlINLevlglAQNHVDGPIPIEvFCKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGDLP 305
Cdd:PLN03150 441 LRHLQS-INL-----SGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
462-571 |
7.14e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 53.28 E-value: 7.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 462 LNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFvtgcvsimflklshnkfsgrflpreTNFPSLDVLRMDNNL 541
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-------------------------GSITSLEVLDLSYNS 477
|
90 100 110
....*....|....*....|....*....|
gi 1063704824 542 FTGNIGGGLSNSTMLRILDMSNNGLSGAIP 571
Cdd:PLN03150 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVP 507
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
361-646 |
7.72e-07 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 53.16 E-value: 7.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 361 PNFQLSVVVLRFCsLEKipsfllYQKKLRLVDLSSNNLSGNIP----TWLLTNN-----PE-----LEVLQLQNNSFTIF 426
Cdd:PRK15370 163 ANREEAVQRMRDC-LKN------NKTELRLKILGLTTIPACIPeqitTLILDNNelkslPEnlqgnIKTLYANSNQLTSI 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 427 PiPTMVHNLQIFDFSANNIGKFPDKMDHALPNLVRlngSNNGFQGyFPTSIGEmkNISFLDLSYNNFSGkLPRSFVTGcv 506
Cdd:PRK15370 236 P-ATLPDTIQEMELSINRITELPERLPSALQSLDL---FHNKISC-LPENLPE--ELRYLSVYDNSIRT-LPAHLPSG-- 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 507 sIMFLKLSHNKFSgrFLPrETNFPSLDVLRMDNNLFTgniggGLSNS--TMLRILDMSNNGLSgAIPRWLfeFPYLDYVL 584
Cdd:PRK15370 306 -ITHLNVQSNSLT--ALP-ETLPPGLKTLEAGENALT-----SLPASlpPELQVLDVSKNQIT-VLPETL--PPTITTLD 373
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1063704824 585 ISNNFLEgTIPPSLLGMpfLSFLDLSGNQFSgALPSHVDSELGiymflhnnnfTGPIPDTLL 646
Cdd:PRK15370 374 VSRNALT-NLPENLPAA--LQIMQASRNNLV-RLPESLPHFRG----------EGPQPTRII 421
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
652-718 |
9.07e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 52.90 E-value: 9.07e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063704824 652 LDLRNNKLSGSIP----QFDDTQSINillLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLS 718
Cdd:PLN03150 423 LGLDNQGLRGFIPndisKLRHLQSIN---LSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
184-301 |
9.34e-07 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 50.94 E-value: 9.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 184 IKGLKDLTNLELLDLRANKLNgSMQELIHLKKLKALDLSSNKFSssmELQELQNLINLEVLGLAQNHVDGPIPIE----- 258
Cdd:cd21340 39 IENLEFLTNLTHLYLQNNQIE-KIENLENLVNLKKLYLGGNRIS---VVEGLENLTNLEELHIENQRLPPGEKLTfdprs 114
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1063704824 259 VFCKLKNLRDLDLKGNHFvgQIPLCLGSLKKLRVLDLSSNQLS 301
Cdd:cd21340 115 LAALSNSLRVLNISGNNI--DSLEPLAPLRNLEQLDASNNQIS 155
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
579-736 |
1.46e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 52.13 E-value: 1.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 579 YLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVdselgiymflhnnnftGPIPdtllkSVQILDLRNNK 658
Cdd:PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL----------------GSIT-----SLEVLDLSYNS 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 659 LSGSIPQ-FDDTQSINILLLKGNNLTGSIPRELcdlsNVRLL-----DLSDNK-LNGV--IPSCLSNLSFGrlQEDAMAL 729
Cdd:PLN03150 478 FNGSIPEsLGQLTSLRILNLNGNSLSGRVPAAL----GGRLLhrasfNFTDNAgLCGIpgLRACGPHLSVG--AKIGIAF 551
|
....*..
gi 1063704824 730 NIPPSFL 736
Cdd:PLN03150 552 GVSVAFL 558
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
794-849 |
1.40e-05 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 43.28 E-value: 1.40e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1063704824 794 MDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNML 849
Cdd:pfam13855 6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
106-205 |
1.75e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 48.66 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 106 LHPFEEVRSLNLSTEGYNEFNGFFDDVEGYR-----SLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDG 180
Cdd:PLN03150 401 QHPWSGADCQFDSTKGKWFIDGLGLDNQGLRgfipnDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480
|
90 100
....*....|....*....|....*
gi 1063704824 181 PFPiKGLKDLTNLELLDLRANKLNG 205
Cdd:PLN03150 481 SIP-ESLGQLTSLRILNLNGNSLSG 504
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
162-301 |
2.27e-05 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 47.86 E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 162 LNAATSLTTLILTYNEMD---GPFPIKGLKDLTNLELLDLRANKLN--GSM---QELIHLKKLKALDLSSNKFSSS-MEL 232
Cdd:COG5238 204 LTQNTTVTTLWLKRNPIGdegAEILAEALKGNKSLTTLDLSNNQIGdeGVIalaEALKNNTTVETLYLSGNQIGAEgAIA 283
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063704824 233 --QELQNLINLEVLGLAQNHVDGPIPI---EVFCKLKNLRDLDLKGNHF--VGQIPL--CLGSLKKLRVLDLSSNQLS 301
Cdd:COG5238 284 laKALQGNTTLTSLDLSVNRIGDEGAIalaEGLQGNKTLHTLNLAYNGIgaQGAIALakALQENTTLHSLDLSDNQIG 361
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
184-341 |
3.18e-05 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 46.32 E-value: 3.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 184 IKGLKDLTNLELLDLRANKLNgSMQELIHLKKLKALDLSSNKFSssmELQELQNLINLEVLGLAQNHvdgpipIEVFC-- 261
Cdd:cd21340 17 IDNLSLCKNLKVLYLYDNKIT-KIENLEFLTNLTHLYLQNNQIE---KIENLENLVNLKKLYLGGNR------ISVVEgl 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 262 -KLKNLRDLDLKGNH-FVGQI----PLCLGSLKK-LRVLDLSSNQLSgDLpSSFSSLESLEYLSLSDNNFDG----SFSL 330
Cdd:cd21340 87 eNLTNLEELHIENQRlPPGEKltfdPRSLAALSNsLRVLNISGNNID-SL-EPLAPLRNLEQLDASNNQISDleelLDLL 164
|
170
....*....|.
gi 1063704824 331 NPLTNLTNLKL 341
Cdd:cd21340 165 SSWPSLRELDL 175
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
213-287 |
3.59e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 47.50 E-value: 3.59e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1063704824 213 LKKLKALDLSSNKFSSSMELQeLQNLINLEVLGLAQNHVDGPIPiEVFCKLKNLRDLDLKGNHFVGQIPLCLGSL 287
Cdd:PLN03150 441 LRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLRILNLNGNSLSGRVPAALGGR 513
|
|
| LRRNT_2 |
pfam08263 |
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ... |
35-79 |
5.80e-05 |
|
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.
Pssm-ID: 462411 [Multi-domain] Cd Length: 41 Bit Score: 41.13 E-value: 5.80e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1063704824 35 EREALLELKKYLmsrsreSGLDYVLPTWTNDTkSDCCQWDGIKCN 79
Cdd:pfam08263 4 DGQALLAFKSSL------NDPPGALSSWNSSS-SDPCSWTGVTCD 41
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
257-494 |
1.20e-04 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 45.42 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 257 IEVFCKLKNLRDLDLKGNHF----VGQIPLCLGSLKKLRVLDLSSNQLSGD------LPSSFSSLESLEYLSLSDNNF-- 324
Cdd:cd00116 16 TELLPKLLCLQVLRLEGNTLgeeaAKALASALRPQPSLKELCLSLNETGRIprglqsLLQGLTKGCGLQELDLSDNALgp 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 325 DGSFSLNPLTNLTNLKLFKLSSRSHTIQ---VKMESTWQPNFQLSVVVLRFCSLEKIPSF-----LLYQKKLRLVDLSSN 396
Cdd:cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRglrLLAKGLKDLPPALEKLVLGRNRLEGASCEalakaLRANRDLKELNLANN 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 397 NLSGNIPTWL---LTNNPELEVLQLQNNSFT------IFPIPTMVHNLQIFDFSANNIG-----KFPDKMDHALPNLVRL 462
Cdd:cd00116 176 GIGDAGIRALaegLKANCNLEVLDLNNNGLTdegasaLAETLASLKSLEVLNLGDNNLTdagaaALASALLSPNISLLTL 255
|
250 260 270
....*....|....*....|....*....|....*..
gi 1063704824 463 NGSNN-----GFQGyFPTSIGEMKNISFLDLSYNNFS 494
Cdd:cd00116 256 SLSCNditddGAKD-LAEVLAEKESLLELDLRGNKFG 291
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
814-884 |
1.29e-04 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 45.99 E-value: 1.29e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1063704824 814 KLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQ-LLSSLTSLAVFDVSSNNLSGIIPQGRQFN 884
Cdd:PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDdIFTTSSSLRYLNLSNNNFTGSIPRGSIPN 141
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
648-706 |
1.63e-04 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 40.59 E-value: 1.63e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063704824 648 SVQILDLRNNKLSgSIPQ--FDDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKL 706
Cdd:pfam13855 2 NLRSLDLSNNRLT-SLDDgaFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
138-303 |
2.46e-04 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 44.78 E-value: 2.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 138 LSGLRNLKIMDLSTNYFNYS----TFPFLNAATSLTTLILTYNEMDGPFPI---KGLKDLTNLELLDLRANKLNGS---- 206
Cdd:COG5238 232 LKGNKSLTTLDLSNNQIGDEgviaLAEALKNNTTVETLYLSGNQIGAEGAIalaKALQGNTTLTSLDLSVNRIGDEgaia 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 207 -MQELIHLKKLKALDLSSNKFSSS-MEL--QELQNLINLEVLGLAQNHVdGPIPIEVFCKL----KNLRDLDLKGN--HF 276
Cdd:COG5238 312 lAEGLQGNKTLHTLNLAYNGIGAQgAIAlaKALQENTTLHSLDLSDNQI-GDEGAIALAKYlegnTTLRELNLGKNniGK 390
|
170 180
....*....|....*....|....*...
gi 1063704824 277 VGQIPLCLGSLK-KLRVLDLSSNQLSGD 303
Cdd:COG5238 391 QGAEALIDALQTnRLHTLILDGNLIGAE 418
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
240-300 |
4.76e-04 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 39.04 E-value: 4.76e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063704824 240 NLEVLGLAQNHVDGpIPIEVFCKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQL 300
Cdd:pfam13855 2 NLRSLDLSNNRLTS-LDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
138-268 |
9.19e-04 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 41.70 E-value: 9.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 138 LSGLRNLKIMDLSTNYFnySTFPFLNAATSLTTLILTYNEMDG-------PFPIKGLkdLTNLELLDLRANKLnGSMQEL 210
Cdd:cd21340 64 LENLVNLKKLYLGGNRI--SVVEGLENLTNLEELHIENQRLPPgekltfdPRSLAAL--SNSLRVLNISGNNI-DSLEPL 138
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1063704824 211 IHLKKLKALDLSSNKFSSSMELQE-LQNLINLEVLGLAQNHVdgpipievfCKLKNLRD 268
Cdd:cd21340 139 APLRNLEQLDASNNQISDLEELLDlLSSWPSLRELDLTGNPV---------CKKPKYRD 188
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
433-500 |
1.28e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 42.50 E-value: 1.28e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1063704824 433 HNLQIFDFSANNI-GKFPDKMDhALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRS 500
Cdd:PLN03150 442 RHLQSINLSGNSIrGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
166-226 |
1.66e-03 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 37.50 E-value: 1.66e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1063704824 166 TSLTTLILTYNEMDGpFPIKGLKDLTNLELLDLRANKLNG-SMQELIHLKKLKALDLSSNKF 226
Cdd:pfam13855 1 PNLRSLDLSNNRLTS-LDDGAFKGLSNLKVLDLSNNLLTTlSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
206-345 |
2.33e-03 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 40.54 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 206 SMQELIHLKKLKALDLSSNKFSSsmeLQELQNLINLEVLGLAQNHVDgpiPIEVFCKLKNLRDLDLKGNHfvgqipLC-- 283
Cdd:cd21340 16 KIDNLSLCKNLKVLYLYDNKITK---IENLEFLTNLTHLYLQNNQIE---KIENLENLVNLKKLYLGGNR------ISvv 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 284 --LGSLKKLRVLDLSSNQLSGDLPSSFSSLESL------EYLSLSDNNFDgsfSLNPLTNLTNLKLFKLS 345
Cdd:cd21340 84 egLENLTNLEELHIENQRLPPGEKLTFDPRSLAalsnslRVLNISGNNID---SLEPLAPLRNLEQLDAS 150
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
269-341 |
2.42e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 41.73 E-value: 2.42e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1063704824 269 LDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGDLPSSFSSLESLEYLSLSDNNFDGSF--SLNPLTNLTNLKL 341
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIpeSLGQLTSLRILNL 497
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
432-682 |
2.59e-03 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 41.19 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 432 VHNLQIFDFSANNIG----KFPDKMDHALPNLVRLNGSNN--GFQGYFPTSIGEM----KNISFLDLSYNNFSGKLPRSF 501
Cdd:cd00116 22 LLCLQVLRLEGNTLGeeaaKALASALRPQPSLKELCLSLNetGRIPRGLQSLLQGltkgCGLQELDLSDNALGPDGCGVL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 502 --VTGCVSIMFLKLSHNKFSGRFLPR-----ETNFPSLDVLRMDNNLFTGN----IGGGLSNSTMLRILDMSNNGLSGAI 570
Cdd:cd00116 102 esLLRSSSLQELKLNNNGLGDRGLRLlakglKDLPPALEKLVLGRNRLEGAsceaLAKALRANRDLKELNLANNGIGDAG 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 571 PRWLFE----FPYLDYVLISNNFLE----GTIPPSLLGMPFLSFLDLSGNQFSGALPSHVDSELGIY------MFLHNNN 636
Cdd:cd00116 182 IRALAEglkaNCNLEVLDLNNNGLTdegaSALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPnislltLSLSCND 261
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1063704824 637 FT--------GPIPDTllKSVQILDLRNNKLSgsipQFDDTQSINILLLKGNNL 682
Cdd:cd00116 262 ITddgakdlaEVLAEK--ESLLELDLRGNKFG----EEGAQLLAESLLEPGNEL 309
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
104-300 |
6.44e-03 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 39.65 E-value: 6.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 104 SLLHPFEEVRSLNLsteGYNEFNGffddvEGYRSLSGL----RNLKIMDLSTNYFNYSTFPFLnaatslttliltynemd 179
Cdd:cd00116 131 GLKDLPPALEKLVL---GRNRLEG-----ASCEALAKAlranRDLKELNLANNGIGDAGIRAL----------------- 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 180 gpfpIKGLKDLTNLELLDLRANKLN----GSMQELI-HLKKLKALDLSSNKFSS----SMELQELQNLINLEVLGLAQNH 250
Cdd:cd00116 186 ----AEGLKANCNLEVLDLNNNGLTdegaSALAETLaSLKSLEVLNLGDNNLTDagaaALASALLSPNISLLTLSLSCND 261
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063704824 251 V--DGPIP-IEVFCKLKNLRDLDLKGNHF-------VGQIPLCLGSlkKLRVLDLSSNQL 300
Cdd:cd00116 262 ItdDGAKDlAEVLAEKESLLELDLRGNKFgeegaqlLAESLLEPGN--ELESLWVKDDSF 319
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
556-614 |
7.28e-03 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 35.96 E-value: 7.28e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1063704824 556 LRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQF 614
Cdd:pfam13855 3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| |
