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Conserved domains on  [gi|1063705083|ref|NP_001323592|]
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5'-AMP-activated protein kinase beta-2 subunit protein [Arabidopsis thaliana]

Protein Classification

AMPKBI domain-containing protein( domain architecture ID 10659796)

AMPKBI domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AMPKBI smart01010
5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the ...
 21-106 3.79e-23

5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain is sometimes found in proteins belonging to this family.


:

Pssm-ID: 214973  Cd Length: 100  Bit Score: 85.83  E-value: 3.79e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705083   21 VSPVSSYNNVY-----------SSTEDETRDPPAVPPHLQHSLL-----GNQGSMELAYAPQNVVLNHLYIENRdaPRSV 84
Cdd:smart01010   1 QSPPESYTNEIpacftdddfieESPEEKWKEPPALPPHLEKVILntsstATREDPSLLPIPNHVVLNHLYTSSI--KDGV 78

                           90       100
                   ....*....|....*....|..
gi 1063705083   85 VALGFSHRFRTKFVTVVIYKPV 106
Cdd:smart01010  79 LAVAATTRYRGKYVTQVLYKPL 100
 
Name Accession Description Interval E-value
AMPKBI smart01010
5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the ...
 21-106 3.79e-23

5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain is sometimes found in proteins belonging to this family.


Pssm-ID: 214973  Cd Length: 100  Bit Score: 85.83  E-value: 3.79e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705083   21 VSPVSSYNNVY-----------SSTEDETRDPPAVPPHLQHSLL-----GNQGSMELAYAPQNVVLNHLYIENRdaPRSV 84
Cdd:smart01010   1 QSPPESYTNEIpacftdddfieESPEEKWKEPPALPPHLEKVILntsstATREDPSLLPIPNHVVLNHLYTSSI--KDGV 78

                           90       100
                   ....*....|....*....|..
gi 1063705083   85 VALGFSHRFRTKFVTVVIYKPV 106
Cdd:smart01010  79 LAVAATTRYRGKYVTQVLYKPL 100
AMPKBI pfam04739
5'-AMP-activated protein kinase beta subunit, interaction domain; This region is found in the ...
 39-105 1.16e-22

5'-AMP-activated protein kinase beta subunit, interaction domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologs Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain (pfam02922) is sometimes found in proteins belonging to this family.


Pssm-ID: 461416  Cd Length: 70  Bit Score: 83.36  E-value: 1.16e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063705083  39 RDPPAVPPHLQHSLLGNQGSMELAYA----PQNVVLNHLYIENRDapRSVVALGFSHRFRTKFVTVVIYKP 105
Cdd:pfam04739   2 KEPPALPPHLHLTILNKPSSSSDDPSllprPNHVVLNHLYTSSIK--DGVLALGTTHRYKSKYVTTVLYKP 70
 
Name Accession Description Interval E-value
AMPKBI smart01010
5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the ...
 21-106 3.79e-23

5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain is sometimes found in proteins belonging to this family.


Pssm-ID: 214973  Cd Length: 100  Bit Score: 85.83  E-value: 3.79e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705083   21 VSPVSSYNNVY-----------SSTEDETRDPPAVPPHLQHSLL-----GNQGSMELAYAPQNVVLNHLYIENRdaPRSV 84
Cdd:smart01010   1 QSPPESYTNEIpacftdddfieESPEEKWKEPPALPPHLEKVILntsstATREDPSLLPIPNHVVLNHLYTSSI--KDGV 78

                           90       100
                   ....*....|....*....|..
gi 1063705083   85 VALGFSHRFRTKFVTVVIYKPV 106
Cdd:smart01010  79 LAVAATTRYRGKYVTQVLYKPL 100
AMPKBI pfam04739
5'-AMP-activated protein kinase beta subunit, interaction domain; This region is found in the ...
 39-105 1.16e-22

5'-AMP-activated protein kinase beta subunit, interaction domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologs Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain (pfam02922) is sometimes found in proteins belonging to this family.


Pssm-ID: 461416  Cd Length: 70  Bit Score: 83.36  E-value: 1.16e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063705083  39 RDPPAVPPHLQHSLLGNQGSMELAYA----PQNVVLNHLYIENRDapRSVVALGFSHRFRTKFVTVVIYKP 105
Cdd:pfam04739   2 KEPPALPPHLHLTILNKPSSSSDDPSllprPNHVVLNHLYTSSIK--DGVLALGTTHRYKSKYVTTVLYKP 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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