|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
576-1077 |
5.36e-22 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 102.71 E-value: 5.36e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 576 LKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQR---HLAFIDQLIEDKKVLSEKCEAVV 652
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEElrlELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 653 AELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREkwISEKTKKIKEvtvrgLEPEIQKLIARHKQEVRRLKSL 732
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE--LEELEEELEE-----AEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 733 hEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAA 812
Cdd:COG1196 371 -EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 813 RQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEI 892
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 893 RKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLV 972
Cdd:COG1196 530 IGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 973 RQKERA-LEDAQAVNEQLSSERSNLAQVIRQEFEDRLAAS--EEETRQAKAELATLQARQQLELEEVHRRVKTALARKEE 1049
Cdd:COG1196 610 EADARYyVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVtlEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA 689
|
490 500
....*....|....*....|....*...
gi 984880706 1050 AVSSLRTQHEAAVKRADHLEELLEQHRR 1077
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERL 717
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
575-1077 |
5.29e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 99.63 E-value: 5.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 575 RLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEK--ALSRQLQRQREHYEATIQRhlafIDQLIEDKKVLSEKCEAVV 652
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLEleELELELEEAQAEEYELLAE----LARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 653 AELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSL 732
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 733 HEAE-LLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRfQQHLEQEQWALQQQRQRLysEVAEERERLGQQA 811
Cdd:COG1196 396 AELAaQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE-EALEEAAEEEAELEEEEE--ALLELLAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 812 ARQRAELEELRQQLEESSS--ALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELR 889
Cdd:COG1196 473 ALLEAALAELLEELAEAAArlLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 890 EEIRKGRDKEIE-LVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRL 968
Cdd:COG1196 553 VEDDEVAAAAIEyLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 969 QGLVRQKERALEDAQAVneQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKE 1048
Cdd:COG1196 633 EAALRRAVTLAGRLREV--TLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
490 500
....*....|....*....|....*....
gi 984880706 1049 EAVSSLRTQHEAAVKRADHLEELLEQHRR 1077
Cdd:COG1196 711 EAEEERLEEELEEEALEEQLEAEREELLE 739
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
765-1075 |
3.05e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 90.77 E-value: 3.05e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 765 ALGQQERERARQRFQQHLEQEQWALQQQRQRLySEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALraefekgr 844
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAEL-EELEAELEELEAELAELEAELEELRLELEELELELEEAQ-------- 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 845 eEQERRHQMELNTLKQQLELERQAWEAGRTRKEEawLLNREQELREEIrkgrdKEIELVIHRLEADMALAKEESEKAAES 924
Cdd:COG1196 288 -AEEYELLAELARLEQDIARLEERRRELEERLEE--LEEELAELEEEL-----EELEEELEELEEELEEAEEELEEAEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 925 RIKRlrdkyEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEF 1004
Cdd:COG1196 360 LAEA-----EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 984880706 1005 EDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALArkEEAVSSLRTQHEAAVKRADHLEELLEQH 1075
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL--EAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
714-1062 |
8.47e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 89.23 E-value: 8.47e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 714 EIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEAL--GQQERERARQRFQQHLEQEQWALQQ 791
Cdd:COG1196 206 ERQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELeaELAELEAELEELRLELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 792 QRQRLYsEVAEERERLGQQAARQRAELEELRQQLEEsssaLTRALRAEFEKGREEQERRHqmELNTLKQQLELERQAWEA 871
Cdd:COG1196 286 AQAEEY-ELLAELARLEQDIARLEERRRELEERLEE----LEEELAELEEELEELEEELE--ELEEELEEAEEELEEAEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 872 GRTRKEEAwLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERC 951
Cdd:COG1196 359 ELAEAEEA-LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 952 SELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQL 1031
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLA 517
|
330 340 350
....*....|....*....|....*....|.
gi 984880706 1032 ELEEVHRRVKTALARKEEAVSSLRTQHEAAV 1062
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAYEAALEAALAAAL 548
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
577-1077 |
4.91e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 80.57 E-value: 4.91e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 577 KLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAELK 656
Cdd:PTZ00121 1244 KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKK 1323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 657 QEDQRCTERVAQAQAQhelEIKKLKELMSATEKARREKwiSEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAE 736
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAE---EAKKAAEAAKAEAEAAADE--AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 737 LLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEV---AEERERLGQ--QA 811
Cdd:PTZ00121 1399 KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAkkkAEEAKKADEakKK 1478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 812 ARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRhqMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREE 891
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK--AEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEE 1556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 892 IRKGRDKEIELVIHRLEAD--MALAK-EESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKgQLGEAEGENLRL 968
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDknMALRKaEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE-ELKKAEEEKKKV 1635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 969 QGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASE----EETRQAKAELATLQARQQLELEEVHRRVKTAL 1044
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEakkaEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715
|
490 500 510
....*....|....*....|....*....|...
gi 984880706 1045 ARKEEavssLRTQHEAAVKRADHLEELLEQHRR 1077
Cdd:PTZ00121 1716 KKAEE----LKKAEEENKIKAEEAKKEAEEDKK 1744
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
791-1072 |
5.00e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.10 E-value: 5.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 791 QQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAwe 870
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA-- 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 871 agRTRKEEAWLLNREQELREEIRKGRD--KEIELVIHRLEADMALAKEESeKAAESRIKRLRdkyeAELSELEQSERKLQ 948
Cdd:TIGR02168 751 --QLSKELTELEAEIEELEERLEEAEEelAEAEAEIEELEAQIEQLKEEL-KALREALDELR----AELTLLNEEAANLR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 949 ERCSELKGQLGEAEgenLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQ--EFEDRLAASEEETRQAKAELATLQ 1026
Cdd:TIGR02168 824 ERLESLERRIAATE---RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEleALLNERASLEEALALLRSELEELS 900
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 984880706 1027 ARQQlELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELL 1072
Cdd:TIGR02168 901 EELR-ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
669-1077 |
5.63e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.98 E-value: 5.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 669 AQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEvtvrglepEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRC 748
Cdd:COG1196 210 EKAERYRELKEELKELEAELLLLKLRELEAELEELEA--------ELEELEAELEELEAELAELEAELEELRLELEELEL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 749 LRQAEELREQLEREKEALGQQERERARQR---FQQHLEQEQWALQQQRQRLySEVAEERERLGQQAARQRAELEELRQQL 825
Cdd:COG1196 282 ELEEAQAEEYELLAELARLEQDIARLEERrreLEERLEELEEELAELEEEL-EELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 826 EESSSALTRALRAEFEKGREEQERRHQmELNTLKQQLELERQAWEAGRTRKEeawLLNREQELREEIRKGRDKEIELvih 905
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEE-LLEALRAAAELAAQLEELEEAEEA---LLERLERLEEELEELEEALAEL--- 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 906 RLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAV 985
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 986 neqlsSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRA 1065
Cdd:COG1196 514 -----LLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAAL 588
|
410
....*....|..
gi 984880706 1066 DHLEELLEQHRR 1077
Cdd:COG1196 589 AAALARGAIGAA 600
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
796-1078 |
5.73e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.98 E-value: 5.73e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 796 LYSEVAEERERLGQQA--ARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGR 873
Cdd:COG1196 194 ILGELERQLEPLERQAekAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 874 TRKEEAwllnreqELREEIRKGRDKEIELVIHRLEADMALAKEEsEKAAESRIKRLrdkyEAELSELEQSERKLQERCSE 953
Cdd:COG1196 274 LELEEL-------ELELEEAQAEEYELLAELARLEQDIARLEER-RRELEERLEEL----EEELAELEEELEELEEELEE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 954 LKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLEL 1033
Cdd:COG1196 342 LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE 421
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 984880706 1034 EEvhRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRRP 1078
Cdd:COG1196 422 EL--EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
280-1073 |
8.94e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 79.80 E-value: 8.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 280 RHQVQRRGAGAARLEhllQAKREEQRQRSGEGTLLDLHQQKEAARRKAREEKARQARRAAiqelQQKRALRAQKASTAER 359
Cdd:PTZ00121 1165 KAEEARKAEDAKKAE---AARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAE----DAKKAEAVKKAEEAKK 1237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 360 GPPENPRETRVpgmRQPAQELSPTPGGTAHQALKANNTGGGLPAAGPGDRCLPTSDSSPEPQQPPEDRTQDVLaqdaagd 439
Cdd:PTZ00121 1238 DAEEAKKAEEE---RNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEA------- 1307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 440 nlemmapsRGSAKSRGPLEELLHTLQLLEKEPDVLPRPrthhrgryawASEVTTEDDASSLTADNLEKfgKLSAFPEPPE 519
Cdd:PTZ00121 1308 --------KKKAEEAKKADEAKKKAEEAKKKADAAKKK----------AEEAKKAAEAAKAEAEAAAD--EAEAAEEKAE 1367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 520 DGTL-LSEAKLQSIMSFLDEMEKSGQDQLDSQQEGWVPEAGPgpLELGSEVSTSVMRLKLEVEEKKQAMLLLQRALAQQR 598
Cdd:PTZ00121 1368 AAEKkKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE--LKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 599 DLTARRVKETEKALSRQLQRQREHYEATiqrhlafidqliEDKKVLSEKCEAvvAELKQEDQRCTERVAQAQAQHElEIK 678
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKAD------------EAKKKAEEAKKA--DEAKKKAEEAKKKADEAKKAAE-AKK 1510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 679 KLKELMSATEKARREKW-ISEKTKKIKEVtvRGLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELRE 757
Cdd:PTZ00121 1511 KADEAKKAEEAKKADEAkKAEEAKKADEA--KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK 1588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 758 QLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSsaltraLR 837
Cdd:PTZ00121 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENK------IK 1662
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 838 AEFEKGREEQERRHQMElntLKQQLELERQAWEAGRTRKEEAwllNREQELR----EEIRKGRDKEIELVIHRLEADMAL 913
Cdd:PTZ00121 1663 AAEEAKKAEEDKKKAEE---AKKAEEDEKKAAEALKKEAEEA---KKAEELKkkeaEEKKKAEELKKAEEENKIKAEEAK 1736
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 914 AKEESEKaaesrikrlRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLvrqKERALEDAQAVNEQLSSER 993
Cdd:PTZ00121 1737 KEAEEDK---------KKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL---DEEDEKRRMEVDKKIKDIF 1804
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 994 SNLAQVIRQEFEDRLA--ASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEEL 1071
Cdd:PTZ00121 1805 DNFANIIEGGKEGNLVinDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEI 1884
|
..
gi 984880706 1072 LE 1073
Cdd:PTZ00121 1885 EE 1886
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
575-1049 |
1.76e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.44 E-value: 1.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 575 RLKLEVEEKKQAMLLLQRALA---QQRDLTARRVKETEKALsRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAV 651
Cdd:COG1196 278 ELELELEEAQAEEYELLAELArleQDIARLEERRRELEERL-EELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 652 VAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEvtvrglepEIQKLIARHKQEVRRLKS 731
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE--------ALLERLERLEEELEELEE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 732 LHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQA 811
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 812 ARQRAEL------------------EELRQQLEESSSAL---------------------TRALRAEFEkgREEQERRHQ 852
Cdd:COG1196 509 GVKAALLlaglrglagavavligveAAYEAALEAALAAAlqnivveddevaaaaieylkaAKAGRATFL--PLDKIRARA 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 853 MELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDK 932
Cdd:COG1196 587 ALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGS 666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 933 YEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASE 1012
Cdd:COG1196 667 RRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
490 500 510
....*....|....*....|....*....|....*..
gi 984880706 1013 EETRQAKAELATLqarqqLELEEVHRRVKTALARKEE 1049
Cdd:COG1196 747 LLEEEALEELPEP-----PDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
776-1076 |
2.00e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 2.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 776 QRFQQHLEQEQWALQQQRqrlYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRaLRAEFEKGREEQERRhQMEL 855
Cdd:TIGR02168 216 KELKAELRELELALLVLR---LEELREELEELQEELKEAEEELEELTAELQELEEKLEE-LRLEVSELEEEIEEL-QKEL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 856 NTLKQQL-ELERQAweaGRTRKEEAWLLNREQELREEIRKGRDKEIEL--VIHRLEADMALAKEESEkAAESRIKRLRDK 932
Cdd:TIGR02168 291 YALANEIsRLEQQK---QILRERLANLERQLEELEAQLEELESKLDELaeELAELEEKLEELKEELE-SLEAELEELEAE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 933 YEaelsELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASE 1012
Cdd:TIGR02168 367 LE----ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAEL 442
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 984880706 1013 EETRQAKAELATLQARQQLELEEVHRRvktaLARKEEAVSSLRTQHEAAVKRADHLEELLEQHR 1076
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREE----LEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
698-1028 |
2.62e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 2.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 698 EKTKKIKEVT--VRGLEPEIQKLiarhKQEVRRLKslHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERAR 775
Cdd:TIGR02168 674 ERRREIEELEekIEELEEKIAEL----EKALAELR--KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 776 QRFQQHLEQEQwaLQQQRQRLYSEVAEERERLgqqaarqrAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMEL 855
Cdd:TIGR02168 748 RIAQLSKELTE--LEAEIEELEERLEEAEEEL--------AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 856 NTLKQQLELERQAWEAGRTRKEEAWLLNREQELREeirkgrdkEIELVIHRLEaDMALAKEESEKAAESrikrlrdkYEA 935
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSE--------DIESLAAEIE-ELEELIEELESELEA--------LLN 880
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 936 ELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEET 1015
Cdd:TIGR02168 881 ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALE 960
|
330
....*....|...
gi 984880706 1016 RQAKAELATLQAR 1028
Cdd:TIGR02168 961 NKIEDDEEEARRR 973
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
676-1036 |
3.40e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.79 E-value: 3.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 676 EIKKLKELMSATEKARREkwisektkkIKEVTVRglEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQaeel 755
Cdd:TIGR02169 161 EIAGVAEFDRKKEKALEE---------LEEVEEN--IERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEG---- 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 756 rEQLEREKEALGQQERERARQRfqQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEE----LRQQLEESSSA 831
Cdd:TIGR02169 226 -YELLKEKEALERQKEAIERQL--ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEeqlrVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 832 LTRALRAEFEKGREEQ---ERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKeielvIHRLE 908
Cdd:TIGR02169 303 IASLERSIAEKERELEdaeERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAE-----LEEVD 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 909 ADMALAKEESeKAAESRIkrlrDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQ 988
Cdd:TIGR02169 378 KEFAETRDEL-KDYREKL----EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 984880706 989 LSSERSNLAQV---IRQEFEDR---LAASEEETRQAKAELATLQARQQLELEEV 1036
Cdd:TIGR02169 453 QEWKLEQLAADlskYEQELYDLkeeYDRVEKELSKLQRELAEAEAQARASEERV 506
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
638-1002 |
7.35e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.63 E-value: 7.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 638 IEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAQHELEIKK----LKELMSATEKARREK-----WISEKTKKIKEVTV 708
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKreyeGYELLKEKEALERQKeaierQLASLEEELEKLTE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 709 R--GLEPEIQKLIARHKQEVRRLKSLHEAELL--QSDERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQ 784
Cdd:TIGR02169 259 EisELEKRLEEIEQLLEELNKKIKDLGEEEQLrvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 785 EQWALQQQRQRLysevaeERERLGQQAARQRAELEELRQQLEESSSALtRALRAEFEKGREEQERrHQMELNTLKQqlEL 864
Cdd:TIGR02169 339 EELEREIEEERK------RRDKLTEEYAELKEELEDLRAELEEVDKEF-AETRDELKDYREKLEK-LKREINELKR--EL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 865 ERQAWEAGRTRKEEAwllnreqELREEIRKGRDKEIELVIHRLEADMALAKEESEKaaeSRIKRLRDKYEAELSELEQSE 944
Cdd:TIGR02169 409 DRLQEELQRLSEELA-------DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL---EQLAADLSKYEQELYDLKEEY 478
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 984880706 945 RKLQERCSELKGQLGEAEGEnlrlqglVRQKERALEDAQAVNEQLSSERSNLAQVIRQ 1002
Cdd:TIGR02169 479 DRVEKELSKLQRELAEAEAQ-------ARASEERVRGGRAVEEVLKASIQGVHGTVAQ 529
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
567-1074 |
2.82e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 2.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 567 SEVSTSVMRLKLEVEEKKQAMLLLQRAL----AQQRDLTARrvKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKK 642
Cdd:TIGR02168 263 QELEEKLEELRLEVSELEEEIEELQKELyalaNEISRLEQQ--KQILRERLANLERQLEELEAQLEELESKLDELAEELA 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 643 VLSEKCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELmsaTEKARREKWISEKTKKIKEvTVRGLEPEIQKLIARH 722
Cdd:TIGR02168 341 ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL---ETLRSKVAQLELQIASLNN-EIERLEARLERLEDRR 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 723 KQEVRRLKSlHEAELLQSDERASQRCLRQAEELREQLEREKEALgQQERERARQRFQQhLEQEQWALQQQRQRLYSEVAE 802
Cdd:TIGR02168 417 ERLQQEIEE-LLKKLEEAELKELQAELEELEEELEELQEELERL-EEALEELREELEE-AEQALDAAERELAQLQARLDS 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 803 ERERLGQQAARQRAELEELRQQL----------------EESSSALTRALRA-----------------EFEKgREEQER 849
Cdd:TIGR02168 494 LERLQENLEGFSEGVKALLKNQSglsgilgvlselisvdEGYEAAIEAALGGrlqavvvenlnaakkaiAFLK-QNELGR 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 850 RHQMELNTLKQQL----ELERQAWEAG----------------------------------------RTRKEEA------ 879
Cdd:TIGR02168 573 VTFLPLDSIKGTEiqgnDREILKNIEGflgvakdlvkfdpklrkalsyllggvlvvddldnalelakKLRPGYRivtldg 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 880 ------WLLNREQELREEIRKGRDKEIElvihRLEADMALAkEESEKAAESRIKRLRDKYEAELSELEQSERKLQE---R 950
Cdd:TIGR02168 653 dlvrpgGVITGGSAKTNSSILERRREIE----ELEEKIEEL-EEKIAELEKALAELRKELEELEEELEQLRKELEElsrQ 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 951 CSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIrQEFEDRLAASEEETRQAKAELATLQaRQQ 1030
Cdd:TIGR02168 728 ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL-AEAEAEIEELEAQIEQLKEELKALR-EAL 805
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 984880706 1031 LELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1074
Cdd:TIGR02168 806 DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
584-1076 |
2.25e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 61.32 E-value: 2.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 584 KQAMLLLQRALAQQRDLTARRVKETEKALsRQLQRQREHYEATIQRhLAFIDQLIEDKKVLSEKCEAVVAELKQEDQRCT 663
Cdd:COG4717 52 EKEADELFKPQGRKPELNLKELKELEEEL-KEAEEKEEEYAELQEE-LEELEEELEELEAELEELREELEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 664 ERVAQAQAQHELE--IKKLKELmsateKARREKWISektkkiKEVTVRGLEPEIQKLiARHKQEVRRLKSLHEAELLQSD 741
Cdd:COG4717 130 LYQELEALEAELAelPERLEEL-----EERLEELRE------LEEELEELEAELAEL-QEELEELLEQLSLATEEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 742 ERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQ--RLYSEVAEERERLGQQAARQRAELE 819
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLllLIAAALLALLGLGGSLLSLILTIAG 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 820 ELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQL---ELERQAWEAGRTRKEEAWLLNREQELREEIRKGR 896
Cdd:COG4717 278 VLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEEleeLLAALGLPPDLSPEELLELLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 897 DKEIELVIHRLE----ADMALAKEESEKAAESRIKRLRdKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQglV 972
Cdd:COG4717 358 ELEEELQLEELEqeiaALLAEAGVEDEEELRAALEQAE-EYQELKEELEELEEQLEELLGELEELLEALDEEELEEE--L 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 973 RQKERALEDAQAVNEQLSSERSNLAQVIRQefedrlAASEEETRQAKAELATLQARQQlELEEVHRRVKTALARKEEAVS 1052
Cdd:COG4717 435 EELEEELEELEEELEELREELAELEAELEQ------LEEDGELAELLQELEELKAELR-ELAEEWAALKLALELLEEARE 507
|
490 500
....*....|....*....|....*
gi 984880706 1053 SLRTQHEAAV-KRADHLEELLEQHR 1076
Cdd:COG4717 508 EYREERLPPVlERASEYFSRLTDGR 532
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
596-902 |
2.45e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.61 E-value: 2.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 596 QQRDLTARRVKETEKALSR------QLQRQREHYEATIQRHLAFIDQ-----------LIEDKKVLSEKCEAVVAELKQE 658
Cdd:TIGR02168 172 ERRKETERKLERTRENLDRledilnELERQLKSLERQAEKAERYKELkaelrelelalLVLRLEELREELEELQEELKEA 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 659 DQRCTERVAQAQAQHEleikKLKELMSatEKARREKWISEKTKKIKEVT--VRGLEPEIQKLIARHKQEVRRLKSLhEAE 736
Cdd:TIGR02168 252 EEELEELTAELQELEE----KLEELRL--EVSELEEEIEELQKELYALAneISRLEQQKQILRERLANLERQLEEL-EAQ 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 737 LLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERerlgQQAARQRA 816
Cdd:TIGR02168 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE----LQIASLNN 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 817 ELEELRQQLEESSSALTRA---LRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEawLLNREQELREEIR 893
Cdd:TIGR02168 401 EIERLEARLERLEDRRERLqqeIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEE--LREELEEAEQALD 478
|
....*....
gi 984880706 894 KGRDKEIEL 902
Cdd:TIGR02168 479 AAERELAQL 487
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
610-1077 |
2.76e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 61.23 E-value: 2.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 610 KALSRQLQRQREHYEATIQRHlAFIDQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAqhelEIKKLKELMSATEK 689
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRT-ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK----EVKELEELKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 690 ARREKWISEKTKKIKEVTVRGLEPEIQKLIARHK---QEVRRLKSLHEAEllqsderasqrclrqaeelreqlerekeal 766
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEeleEKVKELKELKEKA------------------------------ 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 767 gqqERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLgQQAARQRAELEELRQQLEESSSALtralrAEFEKGREE 846
Cdd:PRK03918 293 ---EEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI-KELEEKEERLEELKKKLKELEKRL-----EELEERHEL 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 847 QERRHQMELNtlKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELviHRLEADMALAKEESEKA----- 921
Cdd:PRK03918 364 YEEAKAKKEE--LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGEL--KKEIKELKKAIEELKKAkgkcp 439
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 922 ------AESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERAledaqavnEQLSSERSN 995
Cdd:PRK03918 440 vcgrelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELA--------EQLKELEEK 511
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 996 LAQVIRQEFEdrlaASEEETRQAKAELATLQARQqleleevhRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQH 1075
Cdd:PRK03918 512 LKKYNLEELE----KKAEEYEKLKEKLIKLKGEI--------KSLKKELEKLEELKKKLAELEKKLDELEEELAELLKEL 579
|
..
gi 984880706 1076 RR 1077
Cdd:PRK03918 580 EE 581
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
581-1077 |
4.53e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 60.75 E-value: 4.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 581 EEKKQAMLLLQRALAQQRDLTArrVKETEKALSRQLQRQREHYEATIQRHLAFIDqliedkkvlsEKCEAVVAELKQEDQ 660
Cdd:TIGR00618 369 EISCQQHTLTQHIHTLQQQKTT--LTQKLQSLCKELDILQREQATIDTRTSAFRD----------LQGQLAHAKKQQELQ 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 661 RCTERVAQAQAQHELEIKKLKELMsATEKARREKWISEKTKKIKEVTVRglEPEIQKLIARHKQEVRRLKSLHEAELLQS 740
Cdd:TIGR00618 437 QRYAELCAAAITCTAQCEKLEKIH-LQESAQSLKEREQQLQTKEQIHLQ--ETRKKAVVLARLLELQEEPCPLCGSCIHP 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 741 DERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQeQWALQQQRQRL---YSEVAEERERLGQQAARQRAE 817
Cdd:TIGR00618 514 NPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQ-RASLKEQMQEIqqsFSILTQCDNRSKEDIPNLQNI 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 818 LEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKgrD 897
Cdd:TIGR00618 593 TVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRV--L 670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 898 KEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQ--- 974
Cdd:TIGR00618 671 PKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKElmh 750
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 975 ------KERALEDAQA-----VNEQLSSERSNLAQVI------RQEFEDRLAASEEETRQAKAELATLQARQQLELEEVH 1037
Cdd:TIGR00618 751 qartvlKARTEAHFNNneevtAALQTGAELSHLAAEIqffnrlREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEE 830
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 984880706 1038 RRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1077
Cdd:TIGR00618 831 EQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAK 870
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
712-964 |
4.62e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.70 E-value: 4.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 712 EPEIQKLIARHKQEVRRLKSLHEAELlqsDERASQRCLRQAEELREQLEREKEALGQQERERAR------QRFQQHLEQE 785
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALE---DAREQIELLEPIRELAERYAAARERLAELEYLRAAlrlwfaQRRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 786 QWALQQQRQRLysevAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERR------HQMELNTLK 859
Cdd:COG4913 297 LEELRAELARL----EAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERerrrarLEALLAALG 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 860 QQLELERQAWEAgrTRKEEAWLLNREQELREEIRKGRDKeielvihrleadmalakeesEKAAESRIKRLRDKYEAELSE 939
Cdd:COG4913 373 LPLPASAEEFAA--LRAEAAALLEALEEELEALEEALAE--------------------AEAALRDLRRELRELEAEIAS 430
|
250 260
....*....|....*....|....*....
gi 984880706 940 LEQS----ERKLQERCSELKGQLGEAEGE 964
Cdd:COG4913 431 LERRksniPARLLALRDALAEALGLDEAE 459
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
579-1063 |
1.11e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 59.47 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 579 EVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQ---LQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAEL 655
Cdd:pfam12128 277 RQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAAdaaVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSEL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 656 KQEDQRC---TERVAQAQAQHELEIKKLKElmsatEKARREKWISEKTKKIKEVTVRGLEPE---IQKLIA--RHKQEVR 727
Cdd:pfam12128 357 ENLEERLkalTGKHQDVTAKYNRRRSKIKE-----QNNRDIAGIKDKLAKIREARDRQLAVAeddLQALESelREQLEAG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 728 RLKSLHEAELLQSdeRASQRCLRQAEELREQLEREKEALGQQERERARQRfQQHLEQEQWALQQQRQRLYSEVAEERERL 807
Cdd:pfam12128 432 KLEFNEEEYRLKS--RLGELKLRLNQATATPELLLQLENFDERIERAREE-QEAANAEVERLQSELRQARKRRDQASEAL 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 808 GQQAAR---QRAELEELRQQLEESSSALTRALRAEfekgreeqerrhqmelntlkqqlelerqaweAGRTRKEEAWLLNR 884
Cdd:pfam12128 509 RQASRRleeRQSALDELELQLFPQAGTLLHFLRKE-------------------------------APDWEQSIGKVISP 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 885 EQELREEIRKGRDKEI---ELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELseleQSERKLQERCSElkgQLGEA 961
Cdd:pfam12128 558 ELLHRTDLDPEVWDGSvggELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEAL----QSAREKQAAAEE---QLVQA 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 962 EGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVK 1041
Cdd:pfam12128 631 NGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKR 710
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 984880706 1042 TA------------------LARKEEAVSSLRTQHEAAVK 1063
Cdd:pfam12128 711 EArtekqaywqvvegaldaqLALLKAAIAARRSGAKAELK 750
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
537-1066 |
1.46e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.38 E-value: 1.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 537 DEMEKSGQDQLDSQQEGWVPEAGPGPLELGSEVSTSvmrlklevEEKKQAMLLLQRALAQQRDLTARRVKETEKAL-SRQ 615
Cdd:PTZ00121 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKA--------EEAKKKAEDARKAEEARKAEDARKAEEARKAEdAKR 1153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 616 LQRQREHYEAtiqrHLAFIDQLIEDKKVLSEKCEAVVAElKQEDQRCTERVAQAQAQHELE-IKKLKELMSATEKARREK 694
Cdd:PTZ00121 1154 VEIARKAEDA----RKAEEARKAEDAKKAEAARKAEEVR-KAEELRKAEDARKAEAARKAEeERKAEEARKAEDAKKAEA 1228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 695 WISEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERA 774
Cdd:PTZ00121 1229 VKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAK 1308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 775 RQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSaltralRAEFEKGREEQERRHQME 854
Cdd:PTZ00121 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE------KAEAAEKKKEEAKKKADA 1382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 855 lntLKQQLELERQAWEAgRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYE 934
Cdd:PTZ00121 1383 ---AKKKAEEKKKADEA-KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 935 AELSELEQSERKlqeRCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASE-- 1012
Cdd:PTZ00121 1459 AEEAKKKAEEAK---KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAkk 1535
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 984880706 1013 -EETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRAD 1066
Cdd:PTZ00121 1536 aDEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE 1590
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
873-1077 |
1.72e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 1.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 873 RTRKEEAWL--------LNREQELREEIRKGRDKeIELVIHRLEADMALAKEESEKAAESRIKRLRDkYEAELSELEQSE 944
Cdd:TIGR02168 171 KERRKETERklertrenLDRLEDILNELERQLKS-LERQAEKAERYKELKAELRELELALLVLRLEE-LREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 945 RKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIrQEFEDRLAASEEETRQAKAELAT 1024
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK-QILRERLANLERQLEELEAQLEE 327
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 984880706 1025 LQARQQLELEEVHRR------VKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1077
Cdd:TIGR02168 328 LESKLDELAEELAELeekleeLKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
726-1054 |
2.29e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 58.21 E-value: 2.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 726 VRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERarqrfqQHLEQEQWALQQQRQRLYSEVAEERE 805
Cdd:pfam17380 278 VQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKAR------QAEMDRQAAIYAEQERMAMERERELE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 806 RLgQQAARQRaELEELRQQleesssaltrALRAEFEKGREEQerRHQMELntlKQQLELERQAWEAGRtrkeeawllnrE 885
Cdd:pfam17380 352 RI-RQEERKR-ELERIRQE----------EIAMEISRMRELE--RLQMER---QQKNERVRQELEAAR-----------K 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 886 QELREEIRKGRDKEielvihrLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGEN 965
Cdd:pfam17380 404 VKILEEERQRKIQQ-------QKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKK 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 966 LRLQGLVRQKERALEDAQAVNEQLSSER-------SNLAQVIRQEFEDRLAASEEETRQAKAElatLQARQQLELEEvHR 1038
Cdd:pfam17380 477 LELEKEKRDRKRAEEQRRKILEKELEERkqamieeERKRKLLEKEMEERQKAIYEEERRREAE---EERRKQQEMEE-RR 552
|
330
....*....|....*.
gi 984880706 1039 RVKTALARKEEAVSSL 1054
Cdd:pfam17380 553 RIQEQMRKATEERSRL 568
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
784-1031 |
2.49e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.47 E-value: 2.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 784 QEQWALQQQRQRLYSEVAEERERLgQQAARQRAELEELRQQLEESSSALTRALRAefekgREEQERRHQMELNTLKQQLE 863
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKEL-AALKKEEKALLKQLAALERRIAALARRIRA-----LEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 864 LERQAWEAGRTRKEEAwllnreqeLREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQS 943
Cdd:COG4942 94 ELRAELEAQKEELAEL--------LRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 944 ERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIR--QEFEDRLAASEEETRQAKAE 1021
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEelEALIARLEAEAAAAAERTPA 245
|
250
....*....|
gi 984880706 1022 LATLQARQQL 1031
Cdd:COG4942 246 AGFAALKGKL 255
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
699-1077 |
3.85e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.47 E-value: 3.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 699 KTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALgqQERERARQRF 778
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLY--QELEALEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 779 QQhlEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQmELNTL 858
Cdd:COG4717 142 AE--LPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEE-ELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 859 KQQLELERQAWEAGRTRKEEAWLLNREQELREEIR--------KGRDKEIELVI-------------------------- 904
Cdd:COG4717 219 QEELEELEEELEQLENELEAAALEERLKEARLLLLiaaallalLGLGGSLLSLIltiagvlflvlgllallflllareka 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 905 -HRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERA--LED 981
Cdd:COG4717 299 sLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAalLAE 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 982 AQAVNE--------------QLSSERSNLAQVIRQEFEDRLAASEEETR-QAKAELATLQARQQlELEEVHRRVKTALAR 1046
Cdd:COG4717 379 AGVEDEeelraaleqaeeyqELKEELEELEEQLEELLGELEELLEALDEeELEEELEELEEELE-ELEEELEELREELAE 457
|
410 420 430
....*....|....*....|....*....|.
gi 984880706 1047 KEEAVSSLRTQHEAAVKRADHlEELLEQHRR 1077
Cdd:COG4717 458 LEAELEQLEEDGELAELLQEL-EELKAELRE 487
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
604-902 |
4.06e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 57.44 E-value: 4.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 604 RVKETEKALSRQLQRQREHYEATIQRHLAFIDQ--LIEDKKVLSEKCEAVVAELKQED-QRCTERVAQAQAQheLEIKKL 680
Cdd:pfam17380 300 RLRQEKEEKAREVERRRKLEEAEKARQAEMDRQaaIYAEQERMAMERERELERIRQEErKRELERIRQEEIA--MEISRM 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 681 KEL----MSATEKARREKWISEKTKKIKEvtvrgLEPEIQKLIARHKQEVRRLKSLHE---AELLQSDERASQRCLRQAE 753
Cdd:pfam17380 378 RELerlqMERQQKNERVRQELEAARKVKI-----LEEERQRKIQQQKVEMEQIRAEQEearQREVRRLEEERAREMERVR 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 754 ELREQLEREKEALGQQERERARQRFQQHLEQEQWAL-QQQRQRLYSEVAEERERLGQQAARQRAELEelrQQLEESSSAL 832
Cdd:pfam17380 453 LEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRaEEQRRKILEKELEERKQAMIEEERKRKLLE---KEMEERQKAI 529
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 833 TRalraEFEKGREEQERRHQMELNTLKQQLELERQAWEAgRTRKEEawlLNREQELREEIRKGRDKEIEL 902
Cdd:pfam17380 530 YE----EERRREAEEERRKQQEMEERRRIQEQMRKATEE-RSRLEA---MEREREMMRQIVESEKARAEY 591
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
729-923 |
4.85e-08 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 57.10 E-value: 4.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 729 LKSLHEAELLQSDERAsQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLysevaEERErlg 808
Cdd:PRK12704 25 RKKIAEAKIKEAEEEA-KRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRL-----LQKE--- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 809 QQAARQRAELEELRQQLEESSSALTRaLRAEFEKGREEQERRHQmelntlKQQLELERQaweAGRTrKEEAwllnrEQEL 888
Cdd:PRK12704 96 ENLDRKLELLEKREEELEKKEKELEQ-KQQELEKKEEELEELIE------EQLQELERI---SGLT-AEEA-----KEIL 159
|
170 180 190
....*....|....*....|....*....|....*
gi 984880706 889 REEIRKGRDKEIELVIHRLEADmalAKEESEKAAE 923
Cdd:PRK12704 160 LEKVEEEARHEAAVLIKEIEEE---AKEEADKKAK 191
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
768-1076 |
6.14e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.97 E-value: 6.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 768 QQERERARQRFQQHLE--QEQWALQQQRQRLYSEVAE---ERERLGQQAARQRAELEELRQQLEE--SSSALTRALRAEF 840
Cdd:PRK02224 233 RETRDEADEVLEEHEErrEELETLEAEIEDLRETIAEterEREELAEEVRDLRERLEELEEERDDllAEAGLDDADAEAV 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 841 EKGREEQERRhqmeLNTLKQQLELERQAweAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEK 920
Cdd:PRK02224 313 EARREELEDR----DEELRDRLEECRVA--AQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEI 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 921 AA-ESRIKRLRDKYE---AELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNL 996
Cdd:PRK02224 387 EElEEEIEELRERFGdapVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPH 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 997 AQVIrQEFEDRLAASEEETRQAKAELATLQAR--QQLELEEVHRRVKTaLARKEEAVSSLRTQHEAAV-----------K 1063
Cdd:PRK02224 467 VETI-EEDRERVEELEAELEDLEEEVEEVEERleRAEDLVEAEDRIER-LEERREDLEELIAERRETIeekreraeelrE 544
|
330
....*....|...
gi 984880706 1064 RADHLEELLEQHR 1076
Cdd:PRK02224 545 RAAELEAEAEEKR 557
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
795-1074 |
1.44e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 795 RLYSEVAEERERLGQ---QAARQRAELEELRQQLEESSSALTRALRAEFEKGRE-----EQERRHQMELNTLKQQLELER 866
Cdd:TIGR02169 671 SEPAELQRLRERLEGlkrELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEieqleQEEEKLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 867 QAWEAGRTRKEEawLLNREQELREEIRKgrdkeIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERK 946
Cdd:TIGR02169 751 QEIENVKSELKE--LEARIEELEEDLHK-----LEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 947 LQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRqEFEDRLAASEEETRQAKAELATLQ 1026
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR-DLESRLGDLKKERDELEAQLRELE 902
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 984880706 1027 ARQQleleevhrRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1074
Cdd:TIGR02169 903 RKIE--------ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
763-1075 |
1.94e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 55.73 E-value: 1.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 763 KEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQR--AELEELRQQLEESSSAltRALRAEF 840
Cdd:PRK04863 300 RQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERyqADLEELEERLEEQNEV--VEEADEQ 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 841 EKGREEQERRHQMELNTLKQQLELERQAWEAGRTRK----------EEAWLLNREQELREE-----IRKGRDKEIELVIH 905
Cdd:PRK04863 378 QEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAiqyqqavqalERAKQLCGLPDLTADnaedwLEEFQAKEQEATEE 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 906 RLEADMAL-----AKEESEKAAESrIKRLRDKYEAE---------LSELEqSERKLQERCSELKGQLGEAEGEnLRLQgl 971
Cdd:PRK04863 458 LLSLEQKLsvaqaAHSQFEQAYQL-VRKIAGEVSRSeawdvarelLRRLR-EQRHLAEQLQQLRMRLSELEQR-LRQQ-- 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 972 vRQKERALEDAQAVNEQLSSERSNLaqvirQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARK---- 1047
Cdd:PRK04863 533 -QRAERLLAEFCKRLGKNLDDEDEL-----EQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARApawl 606
|
330 340 350
....*....|....*....|....*....|
gi 984880706 1048 --EEAVSSLRTQHEAAVKRADHLEELLEQH 1075
Cdd:PRK04863 607 aaQDALARLREQSGEEFEDSQDVTEYMQQL 636
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
714-1074 |
2.45e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 2.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 714 EIQKLIARHKQEVRRLKSlHEAELLQSDERASQRclrqaeelreQLEREKEALGQQERERARQRFQQHLEQEQWALQQQR 793
Cdd:TIGR02169 685 GLKRELSSLQSELRRIEN-RLDELSQELSDASRK----------IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 794 QRLYSEVAEERERLgqqaARQRAELEELRQQLEEsssaLTRALRAEFEKgreeqerrhqmELNTLKQQLELERQAWEAgR 873
Cdd:TIGR02169 754 ENVKSELKELEARI----EELEEDLHKLEEALND----LEARLSHSRIP-----------EIQAELSKLEEEVSRIEA-R 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 874 TRKEEAwLLNREQELREEIRKGRDKEIELVIhrleaDMALAKEESEKAAESRIKRLRDKyEAELSELEQSERKLQERCSE 953
Cdd:TIGR02169 814 LREIEQ-KLNRLTLEKEYLEKEIQELQEQRI-----DLKEQIKSIEKEIENLNGKKEEL-EEELEELEAALRDLESRLGD 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 954 LKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIrQEFEDRLAASEEET------RQAKAELATLQA 1027
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL-SEIEDPKGEDEEIPeeelslEDVQAELQRVEE 965
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 984880706 1028 RQQlELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1074
Cdd:TIGR02169 966 EIR-ALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEE 1011
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
576-1077 |
4.15e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 4.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 576 LKLEVEEKKQAMLLLQ-RALAQQRDLTARRVKETEKALSrQLQRQREHYEATIQRHLAFIDQL----------------- 637
Cdd:TIGR02169 216 LLKEKREYEGYELLKEkEALERQKEAIERQLASLEEELE-KLTEEISELEKRLEEIEQLLEELnkkikdlgeeeqlrvke 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 638 -IEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAQ---HELEIKKLKELMsATEKARREKWISEKTKKIKEVTVrgLEP 713
Cdd:TIGR02169 295 kIGELEAEIASLERSIAEKERELEDAEERLAKLEAEidkLLAEIEELEREI-EEERKRRDKLTEEYAELKEELED--LRA 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 714 EIQKLIARHKQEVRRLKSLHEA-ELLQSDERASQRCLRQAEELREQLEREKEALgQQERERARQR---FQQHLEQEQWAL 789
Cdd:TIGR02169 372 ELEEVDKEFAETRDELKDYREKlEKLKREINELKRELDRLQEELQRLSEELADL-NAAIAGIEAKineLEEEKEDKALEI 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 790 QQQRQRLySEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMEL---------NTLKQ 860
Cdd:TIGR02169 451 KKQEWKL-EQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVlkasiqgvhGTVAQ 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 861 QLELERQ---AWE-AGRTR------------KEEAWLLNREQELREE---IRKGRDKEIELVIHRLEA--DMALAKEESE 919
Cdd:TIGR02169 530 LGSVGERyatAIEvAAGNRlnnvvveddavaKEAIELLKRRKAGRATflpLNKMRDERRDLSILSEDGviGFAVDLVEFD 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 920 KAAESRI----------------KRLRDKY-----EAELSE---------------------LEQSERKLQERCSELKGQ 957
Cdd:TIGR02169 610 PKYEPAFkyvfgdtlvvedieaaRRLMGKYrmvtlEGELFEksgamtggsraprggilfsrsEPAELQRLRERLEGLKRE 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 958 LGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEdRLAASEEETRQAKAELATLQARQQlELEEVH 1037
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE-RLEELEEDLSSLEQEIENVKSELK-ELEARI 767
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 984880706 1038 RRVKTALARKEEAVSSL--RTQHEAAVKRADHLEELLEQHRR 1077
Cdd:TIGR02169 768 EELEEDLHKLEEALNDLeaRLSHSRIPEIQAELSKLEEEVSR 809
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
799-1075 |
4.34e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 4.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 799 EVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREE-------QERRHQME-LNTLKQQLELERQAWE 870
Cdd:PRK02224 416 ELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGsphvetiEEDRERVEeLEAELEDLEEEVEEVE 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 871 AGRTRKEEAWLLNREQELREEIRkgrdkeiELVIHRLEADMALAKEESEKAAESRIKrlRDKYEAELSELEQSERKLQER 950
Cdd:PRK02224 496 ERLERAEDLVEAEDRIERLEERR-------EDLEELIAERRETIEEKRERAEELRER--AAELEAEAEEKREAAAEAEEE 566
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 951 CSELKGQLGEAEGE----NLRLQGLVRQKER--ALEDAQAVNEQLSSERSNLAQVIRQEfEDRLAASEEETRQAKAEL-- 1022
Cdd:PRK02224 567 AEEAREEVAELNSKlaelKERIESLERIRTLlaAIADAEDEIERLREKREALAELNDER-RERLAEKRERKRELEAEFde 645
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 984880706 1023 -ATLQARQQLE-LEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQH 1075
Cdd:PRK02224 646 aRIEEAREDKErAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERR 700
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
799-1074 |
4.61e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 4.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 799 EVAEERErlgQQAARQRAELEELRQQLEESSSALTRALRA-EFEKGREEQERRHQmelnTLKQQLELERQAWEAGRTRKE 877
Cdd:PRK02224 468 ETIEEDR---ERVEELEAELEDLEEEVEEVEERLERAEDLvEAEDRIERLEERRE----DLEELIAERRETIEEKRERAE 540
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 878 EawLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAA-ESRIKRLrDKYEAELSELEQSERKLQERCSELKG 956
Cdd:PRK02224 541 E--LRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAElKERIESL-ERIRTLLAAIADAEDEIERLREKREA 617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 957 QlgeAEGENLRLQGLVRQKERALEDAQAVNEqlssERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLeleev 1036
Cdd:PRK02224 618 L---AELNDERRERLAEKRERKRELEAEFDE----ARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGA----- 685
|
250 260 270
....*....|....*....|....*....|....*...
gi 984880706 1037 hrrVKTALARKEEavssLRTQHEAAVKRADHLEELLEQ 1074
Cdd:PRK02224 686 ---VENELEELEE----LRERREALENRVEALEALYDE 716
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
807-1076 |
5.96e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 5.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 807 LGQQAARQRAELEELRQQLEESSSALTRALRAefEKGREEQERRHQMELNTLKQQLELERQAWEAGRTrkeeawLLNREQ 886
Cdd:COG4913 604 LGFDNRAKLAALEAELAELEEELAEAEERLEA--LEAELDALQERREALQRLAEYSWDEIDVASAERE------IAELEA 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 887 ELrEEIRKGRD--KEIELVIHRLEADMALAKEESEkAAESRIKRLRDKYEAELSELEQSERKLqERCSELKGQLGEAEGE 964
Cdd:COG4913 676 EL-ERLDASSDdlAALEEQLEELEAELEELEEELD-ELKGEIGRLEKELEQAEEELDELQDRL-EAAEDLARLELRALLE 752
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 965 NLRLQGLVRQKERAL-EDAQAVNEQLSSERSNLAQVIRQEFED----------RLAASEEETRQAKAELATLQARqqlEL 1033
Cdd:COG4913 753 ERFAAALGDAVERELrENLEERIDALRARLNRAEEELERAMRAfnrewpaetaDLDADLESLPEYLALLDRLEED---GL 829
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 984880706 1034 EEVHRRVKTALARKEEA-----VSSLRTQHEAAVKRADHLEELLEQHR 1076
Cdd:COG4913 830 PEYEERFKELLNENSIEfvadlLSKLRRAIREIKERIDPLNDSLKRIP 877
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
603-1077 |
6.75e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.53 E-value: 6.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 603 RRVKETEKALSR--QLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAELKQEDQRcTERVAQAQAQHEL---EI 677
Cdd:PRK03918 176 RRIERLEKFIKRteNIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEEL-KEEIEELEKELESlegSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 678 KKLKELMSATEKARRE--KWISEKTKKIKEVT-VRGLEPEIQKLIARHKQEVRRLKSLH-EAELLQSDERASQRCLRQAE 753
Cdd:PRK03918 255 RKLEEKIRELEERIEElkKEIEELEEKVKELKeLKEKAEEYIKLSEFYEEYLDELREIEkRLSRLEEEINGIEERIKELE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 754 ELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYS----------------------EVAEERERLGQQA 811
Cdd:PRK03918 335 EKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKrltgltpeklekeleelekakeEIEEEISKITARI 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 812 ARQRAELEELRQQLEESSSALTRAL---RAEFEKGREEQERRHQMELNTLKQQL-ELERQAWEAGRTRKEEAWLLNREQE 887
Cdd:PRK03918 415 GELKKEIKELKKAIEELKKAKGKCPvcgRELTEEHRKELLEEYTAELKRIEKELkEIEEKERKLRKELRELEKVLKKESE 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 888 LR------EEIRKGRDKEIELVIHRLEADMALAKEESEKAA--ESRIKRLRDK------YEAELSELEQSERKLQERCSE 953
Cdd:PRK03918 495 LIklkelaEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIklKGEIKSLKKElekleeLKKKLAELEKKLDELEEELAE 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 954 LKGQLGE------------------AEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQV-------------IRQ 1002
Cdd:PRK03918 575 LLKELEElgfesveeleerlkelepFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETekrleelrkeleeLEK 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 1003 EF-EDRLAASEEETRQAKAELATLQARqqleLEEVHRRVKTA------LARKEEAVSSLRTQHEAAVKRADHLEELLEQH 1075
Cdd:PRK03918 655 KYsEEEYEELREEYLELSRELAGLRAE----LEELEKRREEIkktlekLKEELEEREKAKKELEKLEKALERVEELREKV 730
|
..
gi 984880706 1076 RR 1077
Cdd:PRK03918 731 KK 732
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
770-1032 |
1.97e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.15 E-value: 1.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 770 ERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQER 849
Cdd:pfam12128 269 SDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQ 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 850 --RHQMELNTLKQQLELERQAwEAGRTRKEEAWLLNREQELR---EEIRKGRDKEIElvihrleaDMALAKEESEKAAES 924
Cdd:pfam12128 349 lpSWQSELENLEERLKALTGK-HQDVTAKYNRRRSKIKEQNNrdiAGIKDKLAKIRE--------ARDRQLAVAEDDLQA 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 925 RIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLvRQKERALEDAQAVNEQLSSERSNLAQVIRQEF 1004
Cdd:pfam12128 420 LESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQL-ENFDERIERAREEQEAANAEVERLQSELRQAR 498
|
250 260
....*....|....*....|....*...
gi 984880706 1005 EDRLAASEeetRQAKAELATLQARQQLE 1032
Cdd:pfam12128 499 KRRDQASE---ALRQASRRLEERQSALD 523
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
574-1064 |
2.59e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 51.71 E-value: 2.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 574 MRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFI-------DQLIEDKKVLSE 646
Cdd:pfam01576 80 LESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDIllledqnSKLSKERKLLEE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 647 KCEAVVAELKQEDQRcTERVAQAQAQHELEIKKLKELMSATEKARREkwiSEKTKKIKEvtvrGLEPEIQKLIARHKQEV 726
Cdd:pfam01576 160 RISEFTSNLAEEEEK-AKSLSKLKNKHEAMISDLEERLKKEEKGRQE---LEKAKRKLE----GESTDLQEQIAELQAQI 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 727 RRLKslheAELLQSDERasqrcLRQAEELREQLEREKEALGQQERErarqrFQQHLEQEQWALQQQRQrlYSEVAEERER 806
Cdd:pfam01576 232 AELR----AQLAKKEEE-----LQAALARLEEETAQKNNALKKIRE-----LEAQISELQEDLESERA--ARNKAEKQRR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 807 -LGQQAARQRAELE----------ELRQQLEESSSALTRALRAE---FEKGREEQERRHQMELNTLKQQLELERQAweAG 872
Cdd:pfam01576 296 dLGEELEALKTELEdtldttaaqqELRSKREQEVTELKKALEEEtrsHEAQLQEMRQKHTQALEELTEQLEQAKRN--KA 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 873 RTRKEEAWLLNREQELREEIRKgrdkeielvihrleadMALAKEESE---KAAESRIKRLRDKY-EAELSELEQSER--K 946
Cdd:pfam01576 374 NLEKAKQALESENAELQAELRT----------------LQQAKQDSEhkrKKLEGQLQELQARLsESERQRAELAEKlsK 437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 947 LQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDR------LAASEEETRQAKA 1020
Cdd:pfam01576 438 LQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERnslqeqLEEEEEAKRNVER 517
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 984880706 1021 ELATLQArQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKR 1064
Cdd:pfam01576 518 QLSTLQA-QLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQ 560
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
867-1077 |
2.98e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 2.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 867 QAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELV--IHRLEADMALAKEEsEKAAESRIKRLRDKYEAELSELEQSE 944
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLkqLAALERRIAALARR-IRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 945 RKLQERCSELKGQLGEAE--GENLRLQGLVRQKE-RALEDAQAVNEQLSSERSNLAQVIRQEFEdRLAASEEETRQAKAE 1021
Cdd:COG4942 97 AELEAQKEELAELLRALYrlGRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLA-ELAALRAELEAERAE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 984880706 1022 LATL---QARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1077
Cdd:COG4942 176 LEALlaeLEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
604-1042 |
3.93e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.27 E-value: 3.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 604 RVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKV----LSEKCEAVVAELKQEDQRCTERVAQAQAQHELEIKK 679
Cdd:pfam15921 239 RIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVeitgLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQ 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 680 LKELMSATEKARREKWISEKT--KKIKEVTVR-----------------------GLEPEIQKLIAR-HKQEVR-RLKSL 732
Cdd:pfam15921 319 LSDLESTVSQLRSELREAKRMyeDKIEELEKQlvlanseltearterdqfsqesgNLDDQLQKLLADlHKREKElSLEKE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 733 HEAELLQSDERASQRC--LRQAEELREQLEREKEALGQQERERArqrfQQHLEQEQWALQQQRQRLySEVAEERERLGQQ 810
Cdd:pfam15921 399 QNKRLWDRDTGNSITIdhLRRELDDRNMEVQRLEALLKAMKSEC----QGQMERQMAAIQGKNESL-EKVSSLTAQLEST 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 811 AARQRAELEEL--RQQLEESSSALTRALRAEFEKgREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQEL 888
Cdd:pfam15921 474 KEMLRKVVEELtaKKMTLESSERTVSDLTASLQE-KERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEA 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 889 REEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYE-----AELSELEQSERKLQERCSELKGQLGEAEG 963
Cdd:pfam15921 553 LKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEindrrLELQEFKILKDKKDAKIRELEARVSDLEL 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 964 ENLRLQGLVRQKERALEDAQAVNEQLSSE----RSNLA------QVIRQEFEDRLAASEEETRQAKAELATLQArqqlEL 1033
Cdd:pfam15921 633 EKVKLVNAGSERLRAVKDIKQERDQLLNEvktsRNELNslsedyEVLKRNFRNKSEEMETTTNKLKMQLKSAQS----EL 708
|
....*....
gi 984880706 1034 EEVHRRVKT 1042
Cdd:pfam15921 709 EQTRNTLKS 717
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
576-1035 |
4.87e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.74 E-value: 4.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 576 LKLEVEEKKQAMLLLQRALAQQRDLTARRvkeTEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAE- 654
Cdd:TIGR00618 403 DILQREQATIDTRTSAFRDLQGQLAHAKK---QQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKe 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 655 --LKQEDQRCTERVAQAQAQHELEiKKLKELMSATEKARREKWISEKTKKI---KEVTVRGLEPEIQKLIARHKQEVRRL 729
Cdd:TIGR00618 480 qiHLQETRKKAVVLARLLELQEEP-CPLCGSCIHPNPARQDIDNPGPLTRRmqrGEQTYAQLETSEEDVYHQLTSERKQR 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 730 KSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQ-----QERERARQRFQQHLEQEQWALQQQRQRLYSEVAEER 804
Cdd:TIGR00618 559 ASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQdltekLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCS 638
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 805 ERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGR---TRKEEAWL 881
Cdd:TIGR00618 639 QELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLReleTHIEEYDR 718
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 882 LNREQELREEIRK----GRDKEIELVIHRLEADMALAKEESEKAAESRIKRL--RDKYEAELSELEQSERKLQERCSELK 955
Cdd:TIGR00618 719 EFNEIENASSSLGsdlaAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVtaALQTGAELSHLAAEIQFFNRLREEDT 798
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 956 GQLGEAEGENLR-----LQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDrlaaseEETRQAKAELATLQARQQ 1030
Cdd:TIGR00618 799 HLLKTLEAEIGQeipsdEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKY------EECSKQLAQLTQEQAKII 872
|
....*
gi 984880706 1031 LELEE 1035
Cdd:TIGR00618 873 QLSDK 877
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
769-955 |
5.89e-06 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 50.40 E-value: 5.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 769 QERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALT--RALRAEFEKGREE 846
Cdd:PHA02562 194 QQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNklNTAAAKIKSKIEQ 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 847 QERRHQM-----ELNTLKQQLELERQAWEAGRTRKEEAWL-LNREQELREEIRKGRDK--EIELVIHRLEADMALAK--- 915
Cdd:PHA02562 274 FQKVIKMyekggVCPTCTQQISEGPDRITKIKDKLKELQHsLEKLDTAIDELEEIMDEfnEQSKKLLELKNKISTNKqsl 353
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 984880706 916 ---EESEKAAESRIKRLRDK---YEAELSELEQSERKLQERCSELK 955
Cdd:PHA02562 354 itlVDKAKKVKAAIEELQAEfvdNAEELAKLQDELDKIVKTKSELV 399
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
764-1077 |
6.05e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 6.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 764 EALGQQERERARQRFQQHlEQEQWALQQQRQRLYSE---VAEERERLGQQAARQRAELEELRQQLEESSSALTRALRaef 840
Cdd:pfam15921 259 ELLLQQHQDRIEQLISEH-EVEITGLTEKASSARSQansIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELR--- 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 841 ekgreEQERRHQMELNTLKQQLELERQAWEAGRTRKEEawLLNREQELREEIRKgrdkeIELVIHRLEADMALAKEESek 920
Cdd:pfam15921 335 -----EAKRMYEDKIEELEKQLVLANSELTEARTERDQ--FSQESGNLDDQLQK-----LLADLHKREKELSLEKEQN-- 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 921 aaesriKRLRDKYEAELSELEQSERKLQERCSE-------LKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSER 993
Cdd:pfam15921 401 ------KRLWDRDTGNSITIDHLRRELDDRNMEvqrlealLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTK 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 994 SNLAQVIRQ--------EFEDR----LAASEEETRQA----KAELATLQARQQLELEEV--------HRR--------VK 1041
Cdd:pfam15921 475 EMLRKVVEEltakkmtlESSERtvsdLTASLQEKERAieatNAEITKLRSRVDLKLQELqhlknegdHLRnvqteceaLK 554
|
330 340 350
....*....|....*....|....*....|....*.
gi 984880706 1042 TALARKEEAVSSLRTQHEaavkradHLEELLEQHRR 1077
Cdd:pfam15921 555 LQMAEKDKVIEILRQQIE-------NMTQLVGQHGR 583
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
576-1036 |
6.78e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.35 E-value: 6.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 576 LKLEVEEKKQamLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAEL 655
Cdd:TIGR00618 158 LKAKSKEKKE--LLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 656 KQEDQrctervAQAQAQHELEikklkelmSATEKARREKWISEKTKKIKEVtvRGLEPEIQKLIARHKQEVRRLKSLHEA 735
Cdd:TIGR00618 236 QQTQQ------SHAYLTQKRE--------AQEEQLKKQQLLKQLRARIEEL--RAQEAVLEETQERINRARKAAPLAAHI 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 736 ELLQSDERASQRCLRQaeelreqlerekeaLGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERERLGQQAARQR 815
Cdd:TIGR00618 300 KAVTQIEQQAQRIHTE--------------LQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVAT 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 816 AELEELRQQLEESS---------SALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQ 886
Cdd:TIGR00618 366 SIREISCQQHTLTQhihtlqqqkTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAA 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 887 ELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKG---QLGEAEG 963
Cdd:TIGR00618 446 AITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNParqDIDNPGP 525
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 984880706 964 ENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAqvirqefedRLAASEEETRQAKAELATLQARQQLELEEV 1036
Cdd:TIGR00618 526 LTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRA---------SLKEQMQEIQQSFSILTQCDNRSKEDIPNL 589
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
568-950 |
9.01e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.97 E-value: 9.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 568 EVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEK 647
Cdd:pfam02463 633 ELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEEL 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 648 CEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHKQEVR 727
Cdd:pfam02463 713 KKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 728 RLKSLHEAELLQSDERASQRclrQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERErl 807
Cdd:pfam02463 793 EEKLKAQEEELRALEEELKE---EAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE-- 867
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 808 gqqaarQRAELEELRQQLEESssaltRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQE 887
Cdd:pfam02463 868 ------LLQELLLKEEELEEQ-----KLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEE 936
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 984880706 888 LREEIRKGRDKEIELVIHRLEAD-----MALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQER 950
Cdd:pfam02463 937 PEELLLEEADEKEKEENNKEEEEernkrLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEK 1004
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
575-1077 |
1.08e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 575 RLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQRehyeatiqrhlafidqliedkkvlsEKCEAVVAE 654
Cdd:COG4913 266 AARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAEL-------------------------ERLEARLDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 655 LKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKW--ISEKTKKIkEVTVRGLEPEIQKLIARHKQEVRRLKSL 732
Cdd:COG4913 321 LREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRarLEALLAAL-GLPLPASAEEFAALRAEAAALLEALEEE 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 733 HEAelLQSDERASQRCLRQAEELREQLEREKEALGQ------QERERARQRFQQHL------------------EQEQW- 787
Cdd:COG4913 400 LEA--LEEALAEAEAALRDLRRELRELEAEIASLERrksnipARLLALRDALAEALgldeaelpfvgelievrpEEERWr 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 788 -----ALQQQRQRL------YSEVAE--ERERLGQ------------QAARQRAELEELRQQLEESSSALTRALRAEFEK 842
Cdd:COG4913 478 gaierVLGGFALTLlvppehYAAALRwvNRLHLRGrlvyervrtglpDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGR 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 843 GR-------EEQERRHQMELnTLKQQLELERQAWEAG-RTRKEEAWLL---NREQ--ELREEIRkgrdkEIELVIHRLEA 909
Cdd:COG4913 558 RFdyvcvdsPEELRRHPRAI-TRAGQVKGNGTRHEKDdRRRIRSRYVLgfdNRAKlaALEAELA-----ELEEELAEAEE 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 910 DMALAKEESEkaaesRIKRLRDKYE--AELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNE 987
Cdd:COG4913 632 RLEALEAELD-----ALQERREALQrlAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEE 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 988 QLssersNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLE----LEEVHRRVKTALARKeEAVSSLRTQHEAAVK 1063
Cdd:COG4913 707 EL-----DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLElralLEERFAAALGDAVER-ELRENLEERIDALRA 780
|
570
....*....|....
gi 984880706 1064 RADHLEELLEQHRR 1077
Cdd:COG4913 781 RLNRAEEELERAMR 794
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
652-1070 |
1.09e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.66 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 652 VAELKQEDQRCT---ERVAQAQAQHELEIKKL--KELMSATEKARREKWISEKTKKIKEVTvrGLEPEIQKLIARHKQEV 726
Cdd:TIGR00606 669 ITQLTDENQSCCpvcQRVFQTEAELQEFISDLqsKLRLAPDKLKSTESELKKKEKRRDEML--GLAPGRQSIIDLKEKEI 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 727 RRLKslheaELLQSDERASQRclrqaeelreqlerEKEALGQQERERARQRFQQHLEQEQWALQQQRQRLYSEVAEERER 806
Cdd:TIGR00606 747 PELR-----NKLQKVNRDIQR--------------LKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERK 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 807 LGQQAARQRA-----ELEELRQQLEESSSALTRA-----LRAEFEKGREEQERRHQMELNTLK-QQLELERQAWEAGRTR 875
Cdd:TIGR00606 808 IAQQAAKLQGsdldrTVQQVNQEKQEKQHELDTVvskieLNRKLIQDQQEQIQHLKSKTNELKsEKLQIGTNLQRRQQFE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 876 KEEAWLLNREQELREEIRKGRDKEIELV-----IHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQER 950
Cdd:TIGR00606 888 EQLVELSTEVQSLIREIKDAKEQDSPLEtflekDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDG 967
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 951 CSE-LKGQLGEAEGENLRLQGLVRQKERALED----AQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATL 1025
Cdd:TIGR00606 968 KDDyLKQKETELNTVNAQLEECEKHQEKINEDmrlmRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQM 1047
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 984880706 1026 QARQQleleevhrrvKTALARKEEAVSSLRTQHEAAVKRADHLEE 1070
Cdd:TIGR00606 1048 QVLQM----------KQEHQKLEENIDLIKRNHVLALGRQKGYEK 1082
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
567-988 |
1.24e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 567 SEVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLtarrvkETEKALSRQLQRQREHYEAtIQRHLAFIDQLIEDKKVLSE 646
Cdd:COG4717 98 EELEEELEELEAELEELREELEKLEKLLQLLPLY------QELEALEAELAELPERLEE-LEERLEELRELEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 647 KCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSA--TEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHKQ 724
Cdd:COG4717 171 ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAEleEELEEAQEELEELEEELEQLENELEAAALEERLKEARL 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 725 EVRRLKSLHEAELLQSDERASQR--------CLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWAlqqqrqrl 796
Cdd:COG4717 251 LLLIAAALLALLGLGGSLLSLILtiagvlflVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELE-------- 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 797 ysevaEERERLGQQAARQRAELEELRQQLEEsssaltraLRAEFEKGREEQERRHQMELNTLKQQLeLERQAWEAGRTRK 876
Cdd:COG4717 323 -----ELLAALGLPPDLSPEELLELLDRIEE--------LQELLREAEELEEELQLEELEQEIAAL-LAEAGVEDEEELR 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 877 EEAWLLNREQELREEIrkgrdkeiELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKG 956
Cdd:COG4717 389 AALEQAEEYQELKEEL--------EELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEA 460
|
410 420 430
....*....|....*....|....*....|..
gi 984880706 957 QLGEAEGENlRLQGLVRQKERALEDAQAVNEQ 988
Cdd:COG4717 461 ELEQLEEDG-ELAELLQELEELKAELRELAEE 491
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
794-960 |
1.32e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.61 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 794 QRLYSEVAEERERLGqqaaRQRAELEELRQQLEESSSALTrALRAEFEKGREEQeRRHQMELNTLKQQLELERQAWEAGR 873
Cdd:COG1579 13 QELDSELDRLEHRLK----ELPAELAELEDELAALEARLE-AAKTELEDLEKEI-KRLELEIEEVEARIKKYEEQLGNVR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 874 TRKEEAWLLNREQELREEIRKGRDKEIELV--IHRLEADMALAKEESEKaAESRIKRLRDKYEAELSELEQSERKLQERC 951
Cdd:COG1579 87 NNKEYEALQKEIESLKRRISDLEDEILELMerIEELEEELAELEAELAE-LEAELEEKKAELDEELAELEAELEELEAER 165
|
....*....
gi 984880706 952 SELKGQLGE 960
Cdd:COG1579 166 EELAAKIPP 174
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
578-954 |
2.92e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 2.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 578 LEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALS------RQLQRQREhyeaTIQRHLAFIDQLIEDKKVLSEKCEAV 651
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSdasrkiGEIEKEIE----QLEQEEEKLKERLEELEEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 652 VAELKQEDQRCTERVaqaqAQHELEIKKLKELMSATEKARREKWISEKTKKIKEvtvrgLEPEIQKLIARHKQEVRRLKS 731
Cdd:TIGR02169 753 IENVKSELKELEARI----EELEEDLHKLEEALNDLEARLSHSRIPEIQAELSK-----LEEEVSRIEARLREIEQKLNR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 732 LHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERErarqRFQQHLEQEQWALQQQRQRLySEVAEERERLgqqa 811
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE----ELEEELEELEAALRDLESRL-GDLKKERDEL---- 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 812 arqRAELEELRQQLEESSSALtralraefekgreEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAwllnREQELREE 891
Cdd:TIGR02169 895 ---EAQLRELERKIEELEAQI-------------EKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI----PEEELSLE 954
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 984880706 892 IRKGRDKEIELVIHRLEADMALAKEESEKAAESrikrlRDKYEAELSELEQSERKLQERCSEL 954
Cdd:TIGR02169 955 DVQAELQRVEEEIRALEPVNMLAIQEYEEVLKR-----LDELKEKRAKLEEERKAILERIEEY 1012
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
572-863 |
2.97e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 2.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 572 SVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSE---KC 648
Cdd:TIGR02168 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREaldEL 808
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 649 EAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREkwISEKTKKIKEVTVRGLEPEIQ---KLIARHKQE 725
Cdd:TIGR02168 809 RAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED--IESLAAEIEELEELIEELESEleaLLNERASLE 886
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 726 VRRLKSLHEAELLQSDERASQRCLRQAeelreqlerekealgQQERERARQRFQQHLEQEQwALQQQRQRLYSEVAEERE 805
Cdd:TIGR02168 887 EALALLRSELEELSEELRELESKRSEL---------------RRELEELREKLAQLELRLE-GLEVRIDNLQERLSEEYS 950
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 984880706 806 RLGQQAARQRAELEELRQQLEESSSALTRALRA----------EFEkgrEEQERR----HQME-LNTLKQQLE 863
Cdd:TIGR02168 951 LTLEEAEALENKIEDDEEEARRRLKRLENKIKElgpvnlaaieEYE---ELKERYdfltAQKEdLTEAKETLE 1020
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
666-894 |
3.58e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 3.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 666 VAQAQAQHELEiKKLKELMSatEKARREKWISEKTKKIKEvtvrgLEPEIQKLIARHKQEVRRLKSLheaellQSDERAS 745
Cdd:COG4942 16 AAQADAAAEAE-AELEQLQQ--EIAELEKELAALKKEEKA-----LLKQLAALERRIAALARRIRAL------EQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 746 QRCLRQAEELREQLEREKEALGQQ--ERERARQRFQQH------LEQEQWALQQQRQRLYSEVAEERERLGQQAARQRAE 817
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEElaELLRALYRLGRQpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984880706 818 LEELRQQLEESSSALTRALraefekgREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRK 894
Cdd:COG4942 162 LAALRAELEAERAELEALL-------AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
809-1049 |
5.26e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.48 E-value: 5.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 809 QQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRhqMELNTLKQQLELERQAWEAGRTRKEEawllnREQEL 888
Cdd:pfam01576 22 QKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMR--ARLAARKQELEEILHELESRLEEEEE-----RSQQL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 889 REEIRKGRDKEIELVIHRLEADMALAKEESEK-AAESRIKRLRDK---YEAELSELEQSERKLQERCSELKGQLGEAEGE 964
Cdd:pfam01576 95 QNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKvTTEAKIKKLEEDillLEDQNSKLSKERKLLEERISEFTSNLAEEEEK 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 965 NLRLQGLVRQKERALEDAQavneqlssERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARqqleLEEvhrrVKTAL 1044
Cdd:pfam01576 175 AKSLSKLKNKHEAMISDLE--------ERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQ----IAE----LRAQL 238
|
....*
gi 984880706 1045 ARKEE 1049
Cdd:pfam01576 239 AKKEE 243
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
819-1050 |
5.76e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.27 E-value: 5.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 819 EELRQQLEESS--SALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAgRTRKEEAWLLNREQELREEIRKGR 896
Cdd:pfam02463 152 PERRLEIEEEAagSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQA-KKALEYYQLKEKLELEEEYLLYLD 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 897 DKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKE 976
Cdd:pfam02463 231 YLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKV 310
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 984880706 977 RALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEA 1050
Cdd:pfam02463 311 DDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESE 384
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
593-1030 |
6.36e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.25 E-value: 6.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 593 ALAQQRDLTARRVKETeKALSRQLQRQREHYEATIQRHLAFidqliedkkVLSEKCEAVVAELKQEDQRCTERVAQAQA- 671
Cdd:COG3096 789 ELRAERDELAEQYAKA-SFDVQKLQRLHQAFSQFVGGHLAV---------AFAPDPEAELAALRQRRSELERELAQHRAq 858
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 672 --QHELEIKKLKELMSAtekarrekwisektkkikevtVRGLEPEIQKLIARHKQEvrRLKSLHE-AELLQSDERASQRC 748
Cdd:COG3096 859 eqQLRQQLDQLKEQLQL---------------------LNKLLPQANLLADETLAD--RLEELREeLDAAQEAQAFIQQH 915
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 749 LRQAEELREQLEREKEALGQQERerarqrFQQHLEQEQWALQQQRQRLY--SEVAEERERLGQQAArqraeleelrQQLE 826
Cdd:COG3096 916 GKALAQLEPLVAVLQSDPEQFEQ------LQADYLQAKEQQRRLKQQIFalSEVVQRRPHFSYEDA----------VGLL 979
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 827 ESSSALTRALRAEFEKGrEEQERRHQMELNTLKQQLELERQAWEAGRTRKEeawllNREQELREEIRkgrdkeielvihR 906
Cdd:COG3096 980 GENSDLNEKLRARLEQA-EEARREAREQLRQAQAQYSQYNQVLASLKSSRD-----AKQQTLQELEQ------------E 1041
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 907 LEADMALAKEESEKAAESRikrlRDKYEAELSELEQserklqeRCSELKGQLGEAEGENLRLQGLVRQKERaleDAQAVN 986
Cdd:COG3096 1042 LEELGVQADAEAEERARIR----RDELHEELSQNRS-------RRSQLEKQLTRCEAEMDSLQKRLRKAER---DYKQER 1107
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 984880706 987 EQLSSERSNLAQVIRqefedRLAASEEETRQAKAELATLQARQQ 1030
Cdd:COG3096 1108 EQVVQAKAGWCAVLR-----LARDNDVERRLHRRELAYLSADEL 1146
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
795-1079 |
1.08e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 795 RLYSEVAEERER-LGQQAARQRAELEELRQQLE--ESSSALTRALRAEFEKGREEQERRHQmELNTLKQQLELERQAWEA 871
Cdd:PRK02224 191 QLKAQIEEKEEKdLHERLNGLESELAELDEEIEryEEQREQARETRDEADEVLEEHEERRE-ELETLEAEIEDLRETIAE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 872 GRTRKEEawllnreqeLREEIRKGRDKEIELvihRLEADMALAKEESEKAAESRIkrlrdkyEAELSELEQSERKLQERC 951
Cdd:PRK02224 270 TEREREE---------LAEEVRDLRERLEEL---EEERDDLLAEAGLDDADAEAV-------EARREELEDRDEELRDRL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 952 SELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRqEFEDRLAASEEETRQAKAELATLQARQQl 1031
Cdd:PRK02224 331 EECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVE-DRREEIEELEEEIEELRERFGDAPVDLG- 408
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 984880706 1032 ELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRRPT 1079
Cdd:PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPE 456
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
573-1074 |
1.12e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.58 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 573 VMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQR-QREHYEATIQRHLAFIDQLIEDKKVLSEKCEAV 651
Cdd:TIGR00606 441 TIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERElSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKL 520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 652 VAELKQEDQRCTER-----VAQAQAQHELEIKKLK-----ELMSAT----EKARREKWISEKTKKIK--EVTVRGLEPEI 715
Cdd:TIGR00606 521 DQEMEQLNHHTTTRtqmemLTKDKMDKDEQIRKIKsrhsdELTSLLgyfpNKKQLEDWLHSKSKEINqtRDRLAKLNKEL 600
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 716 QKLIARHKQEVRRLKSLHEAELLQSDErasqrclrqaeelreqlerEKEALGQQERERARQRFQQHLEQ--EQWALQQQR 793
Cdd:TIGR00606 601 ASLEQNKNHINNELESKEEQLSSYEDK-------------------LFDVCGSQDEESDLERLKEEIEKssKQRAMLAGA 661
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 794 QRLYSEVAEERER-------LGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELER 866
Cdd:TIGR00606 662 TAVYSQFITQLTDenqsccpVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDL 741
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 867 QAWEAGRTRKEEAWLLNREQELREEIRKgRDKEIELVIHRLEA------DMALAKEESEKAAESRIKRLRDKYEAELSEL 940
Cdd:TIGR00606 742 KEKEIPELRNKLQKVNRDIQRLKNDIEE-QETLLGTIMPEEESakvcltDVTIMERFQMELKDVERKIAQQAAKLQGSDL 820
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 941 EQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVI--RQEFEDRLAASEEETRQA 1018
Cdd:TIGR00606 821 DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLqrRQQFEEQLVELSTEVQSL 900
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 984880706 1019 KAELAtlQARQQLELEEVHRrvKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1074
Cdd:TIGR00606 901 IREIK--DAKEQDSPLETFL--EKDQQEKEELISSKETSNKKAQDKVNDIKEKVKN 952
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
855-1077 |
1.95e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 855 LNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRkgrDKEIELVIHRLEADMALAKEESeKAAESRIKRLrdkyE 934
Cdd:COG3206 154 ANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELE---EAEAALEEFRQKNGLVDLSEEA-KLLLQQLSEL----E 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 935 AELSELEQSERKLQERCSELKGQLGEAEGENLRLQGlvrqkeraledaqavNEQLSSERSNLAQVIRQ--EFEDRLAASE 1012
Cdd:COG3206 226 SQLAEARAELAEAEARLAALRAQLGSGPDALPELLQ---------------SPVIQQLRAQLAELEAElaELSARYTPNH 290
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 984880706 1013 EETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1077
Cdd:COG3206 291 PDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRR 355
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
881-1077 |
2.36e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 881 LLNREQELREEIRKGRDKEIELVIHRLeadmalakeeseKAAESRIKRLRDKyEAELSELEQSERKLQERCSELKGQLGE 960
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKEL------------KELEEELKEAEEK-EEEYAELQEELEELEEELEELEAELEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 961 AEGENLRLQGLVRQKErALEDAQAVNEQLSSERSNLAQVIRQEfeDRLAASEEETRQAKAELATLQARQQLELEEVHRRV 1040
Cdd:COG4717 114 LREELEKLEKLLQLLP-LYQELEALEAELAELPERLEELEERL--EELRELEEELEELEAELAELQEELEELLEQLSLAT 190
|
170 180 190
....*....|....*....|....*....|....*..
gi 984880706 1041 KTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1077
Cdd:COG4717 191 EEELQDLAEELEELQQRLAELEEELEEAQEELEELEE 227
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
898-1000 |
2.44e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 45.07 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 898 KEIELVIHRLEADMALAKEESEKAAESRIKRLRDKY---EAELSELE---QSERKLQERCSELKGQLGEAEGENLRLQGL 971
Cdd:COG0542 414 DELERRLEQLEIEKEALKKEQDEASFERLAELRDELaelEEELEALKarwEAEKELIEEIQELKEELEQRYGKIPELEKE 493
|
90 100 110
....*....|....*....|....*....|
gi 984880706 972 VRQKERALEDAQA-VNEQLSSErsNLAQVI 1000
Cdd:COG0542 494 LAELEEELAELAPlLREEVTEE--DIAEVV 521
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
725-1033 |
4.39e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.68 E-value: 4.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 725 EVRRLKSLHE-AELLQSDERAS--QRCLRQAEELREQLEREKEALgqqereRARQRFQQHL-------EQEQWALQQQRQ 794
Cdd:COG5022 737 EDMRDAKLDNiATRIQRAIRGRylRRRYLQALKRIKKIQVIQHGF------RLRRLVDYELkwrlfikLQPLLSLLGSRK 810
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 795 RLYSEVAE--------ERERLGQQAARQRAEL--EELRQQLEESSSALTRALR------AEFEKGREEQERRHQMEL--- 855
Cdd:COG5022 811 EYRSYLACiiklqktiKREKKLRETEEVEFSLkaEVLIQKFGRSLKAKKRFSLlkketiYLQSAQRVELAERQLQELkid 890
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 856 ----NTLKQQ-LELErqaWEAGRTRKEEAWLLNREQELREEirkgRDKEIELVIHRLEADMALAKEESEK-------AAE 923
Cdd:COG5022 891 vksiSSLKLVnLELE---SEIIELKKSLSSDLIENLEFKTE----LIARLKKLLNNIDLEEGPSIEYVKLpelnklhEVE 963
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 924 SRIKRLRDKYEAELSELEQSERKLQERCSELKG---QLGEAEGENLRLQ---GLVRQKERALEDAQAVNEQLSSERSNLA 997
Cdd:COG5022 964 SKLKETSEEYEDLLKKSTILVREGNKANSELKNfkkELAELSKQYGALQestKQLKELPVEVAELQSASKIISSESTELS 1043
|
330 340 350
....*....|....*....|....*....|....*.
gi 984880706 998 QviRQEFEDRLAASEEETRQAKAELATLQARQQLEL 1033
Cdd:COG5022 1044 I--LKPLQKLKGLLLLENNQLQARYKALKLRRENSL 1077
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
768-894 |
5.81e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 5.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 768 QQERERARQRFQQHLEQeQWALQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEE-----------------SSS 830
Cdd:PRK04863 532 QQRAERLLAEFCKRLGK-NLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQlqariqrlaarapawlaAQD 610
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 984880706 831 ALTRaLRAEFEkgrEEQERRHQMElNTLKQQLELERQAweagrtRKEEAWLLNREQELREEIRK 894
Cdd:PRK04863 611 ALAR-LREQSG---EEFEDSQDVT-EYMQQLLEREREL------TVERDELAARKQALDEEIER 663
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
790-923 |
6.47e-04 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 43.32 E-value: 6.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 790 QQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAW 869
Cdd:COG2268 218 QANREAEEAELEQEREIETARIAEAEAELAKKKAEERREAETARAEAEAAYEIAEANAEREVQRQLEIAEREREIELQEK 297
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 984880706 870 EAGRtrkeeawllnREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAE 923
Cdd:COG2268 298 EAER----------EEAELEADVRKPAEAEKQAAEAEAEAEAEAIRAKGLAEAE 341
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
788-901 |
7.37e-04 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 43.59 E-value: 7.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 788 ALQQQRQRLYSEVAEERERLGQQAARQRAEL----EELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTlkqqlE 863
Cdd:pfam09731 295 EIDQLSKKLAELKKREEKHIERALEKQKEELdklaEELSARLEEVRAADEAQLRLEFEREREEIRESYEEKLRT-----E 369
|
90 100 110
....*....|....*....|....*....|....*...
gi 984880706 864 LERQAWEAGRTRKEEawLLNREQELREEIRKGRDKEIE 901
Cdd:pfam09731 370 LERQAEAHEEHLKDV--LVEQEIELQREFLQDIKEKVE 405
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
770-890 |
9.62e-04 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 43.02 E-value: 9.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 770 ERERARQRFQQHLEQEQwalQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQE- 848
Cdd:pfam15709 351 ERKRREQEEQRRLQQEQ---LERAEKMREELELEQQRRFEEIRLRKQRLEEERQRQEEEERKQRLQLQAAQERARQQQEe 427
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 984880706 849 -RRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELRE 890
Cdd:pfam15709 428 fRRKLQELQRKKQQEEAERAEAEKQRQKELEMQLAEEQKRLME 470
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
818-1076 |
1.11e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.96 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 818 LEELRQQLEESSSALTRALRAEFEKGREEQERRHQMEL----NTLKQQLELERQAWEAGRTR--KEEAWLLNREQELREE 891
Cdd:pfam07888 9 LEEESHGEEGGTDMLLVVPRAELLQNRLEECLQERAELlqaqEAANRQREKEKERYKRDREQweRQRRELESRVAELKEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 892 IRKGRDKEIELVIHRLEADMALAKEESEKAAESRIkrlRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGL 971
Cdd:pfam07888 89 LRQSREKHEELEEKYKELSASSEELSEEKDALLAQ---RAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQ 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 972 VRQKERALEDAQAVNEQLSSERSNLAQVIrQEFEDRLAASEEETRQAKAELATLQA------RQQLELEEVHRRVKTA-- 1043
Cdd:pfam07888 166 RKEEEAERKQLQAKLQQTEEELRSLSKEF-QELRNSLAQRDTQVLQLQDTITTLTQklttahRKEAENEALLEELRSLqe 244
|
250 260 270
....*....|....*....|....*....|....
gi 984880706 1044 -LARKEEAVSSLRTQHEAAVKRADHLEELLEQHR 1076
Cdd:pfam07888 245 rLNASERKVEGLGEELSSMAAQRDRTQAELHQAR 278
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
768-1071 |
1.37e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.85 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 768 QQERERARQRFQQHLEQEqwalqqqrqrLYSEVAEERERLgqqaARQRAELEELRQQLE---ESSSALTRALRAEFEKGR 844
Cdd:pfam01576 37 QLCEEKNALQEQLQAETE----------LCAEAEEMRARL----AARKQELEEILHELEsrlEEEEERSQQLQNEKKKMQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 845 EE-QERRHQM-ELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEirkgrdKEIELVIHRLEADMALAKEESEKAa 922
Cdd:pfam01576 103 QHiQDLEEQLdEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLS------KERKLLEERISEFTSNLAEEEEKA- 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 923 eSRIKRLRDKYEAELS--------------ELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQ 988
Cdd:pfam01576 176 -KSLSKLKNKHEAMISdleerlkkeekgrqELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEE 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 989 LSSERSNLAQVIRqEFEDRLAASEEETRQAKAELATLQaRQQLELEEVHRRVKTALarkEEAVSSLRTQHEAAVKRADHL 1068
Cdd:pfam01576 255 ETAQKNNALKKIR-ELEAQISELQEDLESERAARNKAE-KQRRDLGEELEALKTEL---EDTLDTTAAQQELRSKREQEV 329
|
...
gi 984880706 1069 EEL 1071
Cdd:pfam01576 330 TEL 332
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
789-978 |
1.60e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 789 LQQQRQRLYSEVAEERERLGQQAARQRAELEELRQQLEE--------SSSALTRALRAEFEKGREEQERRhQMELNTLKQ 860
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEfrqknglvDLSEEAKLLLQQLSELESQLAEA-RAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 861 QLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEA--DMALAKEE---SEKAAESRIKRLRDKYEA 935
Cdd:COG3206 241 RLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNhpDVIALRAQiaaLRAQLQQEAQRILASLEA 320
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 984880706 936 ELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERA 978
Cdd:COG3206 321 ELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVA 363
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
780-1017 |
1.61e-03 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 42.90 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 780 QHLEQEQWAlqqQRQRLYSEVAEE-RERLGQQAARQRAELEELRQQLEESS-SALTRALRAEFEKGREEQeRRHQMELNT 857
Cdd:NF012221 1549 KHAKQDDAA---QNALADKERAEAdRQRLEQEKQQQLAAISGSQSQLESTDqNALETNGQAQRDAILEES-RAVTKELTT 1624
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 858 LKQQLE-LERQAWEAGRTrkEEAW-------LLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKaaesrikrl 929
Cdd:NF012221 1625 LAQGLDaLDSQATYAGES--GDQWrnpfaggLLDRVQEQLDDAKKISGKQLADAKQRHVDNQQKVKDAVAK--------- 1693
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 930 rdkyeaelSE--LEQSERKLQErcSELKGQLGEAEGENLRLQGLVRQKE---------RALEDAQAVNEQLSSERSNLAQ 998
Cdd:NF012221 1694 --------SEagVAQGEQNQAN--AEQDIDDAKADAEKRKDDALAKQNEaqqaesdanAAANDAQSRGEQDASAAENKAN 1763
|
250 260
....*....|....*....|
gi 984880706 999 VIRQEFED-RLAASEEETRQ 1017
Cdd:NF012221 1764 QAQADAKGaKQDESDKPNRQ 1783
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
830-1045 |
1.89e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 830 SALTRALRAEFEKGREEQERRHQMELNTLKqqlELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEA 909
Cdd:COG4717 45 AMLLERLEKEADELFKPQGRKPELNLKELK---ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 910 DMALAKEESEKAAEsRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQ----KERALEDAQAV 985
Cdd:COG4717 122 EKLLQLLPLYQELE-ALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQlslaTEEELQDLAEE 200
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 986 NEQLSSERSNLAQVIRQEfEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALA 1045
Cdd:COG4717 201 LEELQQRLAELEEELEEA-QEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALL 259
|
|
| CHASE3 |
COG5278 |
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms]; |
714-1075 |
1.91e-03 |
|
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
Pssm-ID: 444089 [Multi-domain] Cd Length: 530 Bit Score: 42.20 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 714 EIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRFQQHLEQEQWALQQQR 793
Cdd:COG5278 94 ELRSLTADNPEQQARLDELEALIDQWLAELEQVIALRRAGGLEAALALVRSGEGKALMDEIRARLLLLALALAALLLAAA 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 794 QRLYSEVAEERERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGR 873
Cdd:COG5278 174 ALLLLLLALAALLALAELLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALAALELLAALALALALLLAALLLAL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 874 TRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSE 953
Cdd:COG5278 254 LAALALAALLAAALLALAALLLALAAAAALAAAAALELAAAEALALAELELELLLAAAAAAAAAAAAAAAALAALLALAL 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 954 LKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLEL 1033
Cdd:COG5278 334 ATALAAAAAALALLAALLAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEVLAIAAAAAAAAAEAAAAAAAA 413
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 984880706 1034 EEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQH 1075
Cdd:COG5278 414 AAASAAEALELAEALAEALALAEEEALALAAASSELAEAGAA 455
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
567-840 |
2.02e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 567 SEVSTSVMRLKLEVEEKKQAMLLLQRA---LAQQRDLTARRVKETEKALSRQLQrQREHYEATIQRHLAFIDQLIEDKKV 643
Cdd:TIGR02168 729 SALRKDLARLEAEVEQLEERIAQLSKElteLEAEIEELEERLEEAEEELAEAEA-EIEELEAQIEQLKEELKALREALDE 807
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 644 LsekcEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREkwISEKTKKIKEVTVRGLEPEIQ---KLIA 720
Cdd:TIGR02168 808 L----RAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED--IESLAAEIEELEELIEELESEleaLLNE 881
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 721 RHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALgQQERERARQRFQQHLEQ--EQWAL--------- 789
Cdd:TIGR02168 882 RASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL-ELRLEGLEVRIDNLQERlsEEYSLtleeaeale 960
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 984880706 790 -------QQQRQRL--------------------YSEVAEERERLgqqaARQRAELEELRQQLEESSSALTRALRAEF 840
Cdd:TIGR02168 961 nkieddeEEARRRLkrlenkikelgpvnlaaieeYEELKERYDFL----TAQKEDLTEAKETLEEAIEEIDREARERF 1034
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
888-1047 |
2.07e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.49 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 888 LREEIrKGRDKEIELVIHRLeADMA--LAKEESEKAA-ESRIKRLRdkyeAELSELEqSERklqercSELKGQLGEAEGE 964
Cdd:PRK09039 44 LSREI-SGKDSALDRLNSQI-AELAdlLSLERQGNQDlQDSVANLR----ASLSAAE-AER------SRLQALLAELAGA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 965 NLRLQGLVRQKERALEDAQAV-----------NEQLSSERSNLAQVirqefEDRLAASEEETRQAKAELATLQarqqlel 1033
Cdd:PRK09039 111 GAAAEGRAGELAQELDSEKQVsaralaqvellNQQIAALRRQLAAL-----EAALDASEKRDRESQAKIADLG------- 178
|
170
....*....|....
gi 984880706 1034 eevhRRVKTALARK 1047
Cdd:PRK09039 179 ----RRLNVALAQR 188
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
768-932 |
2.39e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 768 QQERERARQRFQQHLEQEQWALQQQRQRLYSEVaeerERLGQQAARQRAELEELRQQLEESSSALTRALRAEFEKGREEQ 847
Cdd:COG2433 390 LPEEEPEAEREKEHEERELTEEEEEIRRLEEQV----ERLEAEVEELEAELEEKDERIERLERELSEARSEERREIRKDR 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 848 E-RRHQMELNTLKQQLELERqaweagRTRKEEAWLLNREQELREEIRKGRD---KEIELV----IHRLEADMALAK---- 915
Cdd:COG2433 466 EiSRLDREIERLERELEEER------ERIEELKRKLERLKELWKLEHSGELvpvKVVEKFtkeaIRRLEEEYGLKEgdvv 539
|
170
....*....|....*....
gi 984880706 916 --EESEKAAESRIKRLRDK 932
Cdd:COG2433 540 ylRDASGAGRSTAELLAEA 558
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
925-1074 |
2.67e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 925 RIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQavnEQLSSERSNlaqvirqef 1004
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYE---EQLGNVRNN--------- 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 1005 edrlaaseEETRQAKAELATLQARQQlELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1074
Cdd:COG1579 89 --------KEYEALQKEIESLKRRIS-DLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE 149
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
816-917 |
2.87e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.61 E-value: 2.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 816 AELEELRQQLEEsssaLTR---ALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEI 892
Cdd:COG0542 411 EELDELERRLEQ----LEIekeALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYGK 486
|
90 100
....*....|....*....|....*
gi 984880706 893 RKGRDKEIELVIHRLEADMALAKEE 917
Cdd:COG0542 487 IPELEKELAELEEELAELAPLLREE 511
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
593-1078 |
2.95e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 2.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 593 ALAQQRDLTARRVkETEKALSRQLQRQREHYEATIQRHLAFidqliedkkVLSEKCEAVVAELKQEDQRCTERVAQAQA- 671
Cdd:PRK04863 790 QLRAEREELAERY-ATLSFDVQKLQRLHQAFSRFIGSHLAV---------AFEADPEAELRQLNRRRVELERALADHESq 859
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 672 --QHELEIKKLKELMSATEKARREKWISEKTKKIKEVtvRGLEPEIQKL------IARHKQEVRRLKSLheAELLQSDer 743
Cdd:PRK04863 860 eqQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRV--EEIREQLDEAeeakrfVQQHGNALAQLEPI--VSVLQSD-- 933
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 744 asqrclrqaeelreqlerekealgQQERERARQRFQQhlEQEQWALQQQRQRLYSEVAEERERLGQQAARQR----AEL- 818
Cdd:PRK04863 934 ------------------------PEQFEQLKQDYQQ--AQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMlaknSDLn 987
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 819 EELRQQLEESSSALTRAlraefekgrEEQERRHQMELNTLKQQLelerQAWEAGRTRKEEawllnREQELREEIrkgrdk 898
Cdd:PRK04863 988 EKLRQRLEQAEQERTRA---------REQLRQAQAQLAQYNQVL----ASLKSSYDAKRQ-----MLQELKQEL------ 1043
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 899 eielvihrleADMAL-AKEESEKAAESRikrlRDKYEAELSEleqserkLQERCSELKGQLGEAEGEnlrLQGLVRQKER 977
Cdd:PRK04863 1044 ----------QDLGVpADSGAEERARAR----RDELHARLSA-------NRSRRNQLEKQLTFCEAE---MDNLTKKLRK 1099
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 978 ALEDAQAVNEQLSSERSNLAQVIRqefedRLAASEEETRQAKAELATLQARQqleleevhrrvktALARKEEAVSSLRTq 1057
Cdd:PRK04863 1100 LERDYHEMREQVVNAKAGWCAVLR-----LVKDNGVERRLHRRELAYLSADE-------------LRSMSDKALGALRL- 1160
|
490 500
....*....|....*....|....
gi 984880706 1058 heaAVKRADHLEELL---EQHRRP 1078
Cdd:PRK04863 1161 ---AVADNEHLRDVLrlsEDPKRP 1181
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
792-977 |
3.09e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 792 QRQRLYSEVAEERERLGQQAARQRAELEELRQQLEesssALTRALRAEFEKgREEQERRHQMELNTLKQQLELERQAWEA 871
Cdd:pfam15921 643 ERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYE----VLKRNFRNKSEE-METTTNKLKMQLKSAQSELEQTRNTLKS 717
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 872 GRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALA-------KEESEKAAE--SRIKRLRDKYEAELSELEQ 942
Cdd:pfam15921 718 MEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNAnkekhflKEEKNKLSQelSTVATEKNKMAGELEVLRS 797
|
170 180 190
....*....|....*....|....*....|....*
gi 984880706 943 SERKLQERCSELKGQLGEAEGENLRLQGLVRQKER 977
Cdd:pfam15921 798 QERRLKEKVANMEVALDKASLQFAECQDIIQRQEQ 832
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
591-893 |
3.44e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 3.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 591 QRALAQQRDLTARRVKE------TEKALSRQLQRQREHYE--ATIQRHLAFIDQLIEDKKVLSEKCEA---VVAELKQED 659
Cdd:COG3096 298 RRQLAEEQYRLVEMAREleelsaRESDLEQDYQAASDHLNlvQTALRQQEKIERYQEDLEELTERLEEqeeVVEEAAEQL 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 660 QRCTERVAQAQAQHE------------LEIKKLKEL-----MSATEKARR------------EKWISEKTKKIKEVTVRG 710
Cdd:COG3096 378 AEAEARLEAAEEEVDslksqladyqqaLDVQQTRAIqyqqaVQALEKARAlcglpdltpenaEDYLAAFRAKEQQATEEV 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 711 LEPEiQKL------IARHKQ----------EVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQER-ER 773
Cdd:COG3096 458 LELE-QKLsvadaaRRQFEKayelvckiagEVERSQAWQTARELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNaER 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 774 ARQRFQQH----------LEQEQWALQQQRQRLYSEVAEERErlgqQAARQRAELEELRQQLEESSS------ALTRALR 837
Cdd:COG3096 537 LLEEFCQRigqqldaaeeLEELLAELEAQLEELEEQAAEAVE----QRSELRQQLEQLRARIKELAArapawlAAQDALE 612
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 984880706 838 AEFEKGREEQERRHQMeLNTLKQQLELERQAweagrtRKEEAWLLNREQELREEIR 893
Cdd:COG3096 613 RLREQSGEALADSQEV-TAAMQQLLEREREA------TVERDELAARKQALESQIE 661
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
898-1066 |
3.60e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 3.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 898 KEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAEL----SELEQSERKLQERCSELKGQLGEAEGENLRLQglvr 973
Cdd:PRK12704 38 EEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELrerrNELQKLEKRLLQKEENLDRKLELLEKREEELE---- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 974 QKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEEtrqakaelatlqARQQLeLEEVHRRVktalarKEEAVSS 1053
Cdd:PRK12704 114 KKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEE------------AKEIL-LEKVEEEA------RHEAAVL 174
|
170
....*....|...
gi 984880706 1054 LRTQHEAAVKRAD 1066
Cdd:PRK12704 175 IKEIEEEAKEEAD 187
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
789-1057 |
4.21e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 4.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 789 LQQQRQRLYSEVAEERERLGQQaarqRAELEELRQQLEESSSALTRALRAEFEKGRE-EQERRHQMELNTLKQQLELERQ 867
Cdd:TIGR04523 223 LKKQNNQLKDNIEKKQQEINEK----TTEISNTQTQLNQLKDEQNKIKKQLSEKQKElEQNNKKIKELEKQLNQLKSEIS 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 868 AWEagrTRKEEAWLlnreQELREEIRKGRDKEIELvihrleadmalakeesekaaesrikrlrdkyEAELSELEQSERKL 947
Cdd:TIGR04523 299 DLN---NQKEQDWN----KELKSELKNQEKKLEEI-------------------------------QNQISQNNKIISQL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 948 QERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIrQEFEDRLAASEEETRQAKAELATLQA 1027
Cdd:TIGR04523 341 NEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQI-NDLESKIQNQEKLNQQKDEQIKKLQQ 419
|
250 260 270
....*....|....*....|....*....|
gi 984880706 1028 RQQLeLEEVHRRVKTALARKEEAVSSLRTQ 1057
Cdd:TIGR04523 420 EKEL-LEKEIERLKETIIKNNSEIKDLTNQ 448
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
799-902 |
4.31e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 40.25 E-value: 4.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 799 EVAEERERlGQQAARQRAELEELRQQLEESssaltralraefekgREEQERRHQMELNTLKQQLELERQaweagRTRKEE 878
Cdd:cd16269 199 EIEAERAK-AEAAEQERKLLEEQQRELEQK---------------LEDQERSYEEHLRQLKEKMEEERE-----NLLKEQ 257
|
90 100
....*....|....*....|....*
gi 984880706 879 AWLL-NREQELREEIRKGRDKEIEL 902
Cdd:cd16269 258 ERALeSKLKEQEALLEEGFKEQAEL 282
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
652-1024 |
4.39e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 4.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 652 VAELKQEDQRCTERVAQAQAQheleIKKLKELMSATEKaRREKWISEKTKKIKEVTVRGLEPEIQKLiarhKQEVRRLks 731
Cdd:COG4913 612 LAALEAELAELEEELAEAEER----LEALEAELDALQE-RREALQRLAEYSWDEIDVASAEREIAEL----EAELERL-- 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 732 lheaellqsdeRASQRCLRQAEELReqlEREKEALGQQERERARqrfqqhLEQEQWALQQQRQRLYSEVAEERERLGQ-- 809
Cdd:COG4913 681 -----------DASSDDLAALEEQL---EELEAELEELEEELDE------LKGEIGRLEKELEQAEEELDELQDRLEAae 740
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 810 --QAARQRAELEELRQQLEEssSALTRALRAEFEKGREEQERRhqmeLNTLKQQLELERQawEAGRTRKEEAWLLNREQE 887
Cdd:COG4913 741 dlARLELRALLEERFAAALG--DAVERELRENLEERIDALRAR----LNRAEEELERAMR--AFNREWPAETADLDADLE 812
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 888 LREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIkrlrdkyeaeLSELEQSERKLQERCSELKGQLGEAE---GE 964
Cdd:COG4913 813 SLPEYLALLDRLEEDGLPEYEERFKELLNENSIEFVADL----------LSKLRRAIREIKERIDPLNDSLKRIPfgpGR 882
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984880706 965 NLRLQGLVRQKERALE---DAQAVNEQLSSERSNLAQ---VIRQEFEDRLAASEEETRQAKAELAT 1024
Cdd:COG4913 883 YLRLEARPRPDPEVREfrqELRAVTSGASLFDEELSEarfAALKRLIERLRSEEEESDRRWRARVL 948
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
926-1051 |
4.88e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 4.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 926 IKRLRDKYEAELSELEQSERKLQErcselkgQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFE 1005
Cdd:PRK00409 504 IEEAKKLIGEDKEKLNELIASLEE-------LERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ 576
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 984880706 1006 DRLAASEEETRQAKAELATLQARQQL-----ELEEVHRRVKTALARKEEAV 1051
Cdd:PRK00409 577 QAIKEAKKEADEIIKELRQLQKGGYAsvkahELIEARKRLNKANEKKEKKK 627
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
634-989 |
4.91e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 4.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 634 IDQLIEDKKVLSEKceavVAELKQEDQRCTERVAQaqaqheleIKKLKELMSATEKARREKWISEKTKKIKEV--TVRGL 711
Cdd:TIGR04523 259 KDEQNKIKKQLSEK----QKELEQNNKKIKELEKQ--------LNQLKSEISDLNNQKEQDWNKELKSELKNQekKLEEI 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 712 EPEI---QKLIARHKQEVRRLKSlhEAELLQSDERASQRCLRQAEELREQLEREKEALGQQ------ERERARQRFQQHL 782
Cdd:TIGR04523 327 QNQIsqnNKIISQLNEQISQLKK--ELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEiknlesQINDLESKIQNQE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 783 EQEQwALQQQRQRL---YSEVAEERERLGQQAARQRAELEEL-----------------RQQLEESSSALTRA---LRAE 839
Cdd:TIGR04523 405 KLNQ-QKDEQIKKLqqeKELLEKEIERLKETIIKNNSEIKDLtnqdsvkeliiknldntRESLETQLKVLSRSinkIKQN 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 840 FEKGREEQERRHQM--ELNTLKQQLELERQAWEagrtrKEEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEE 917
Cdd:TIGR04523 484 LEQKQKELKSKEKElkKLNEEKKELEEKVKDLT-----KKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKEN 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 918 SEK--------------------AAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVR---- 973
Cdd:TIGR04523 559 LEKeideknkeieelkqtqkslkKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKniks 638
|
410
....*....|....*.
gi 984880706 974 QKERALEDAQAVNEQL 989
Cdd:TIGR04523 639 KKNKLKQEVKQIKETI 654
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
668-1054 |
4.99e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 4.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 668 QAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAE----LLQSDER 743
Cdd:TIGR00606 200 QKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDneikALKSRKK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 744 ASQRCLRQAEELREQLEREKE------------ALGQQERERAR-QRFQQHLEQEQWALQQQRQRLYSEVAE---ERERL 807
Cdd:TIGR00606 280 QMEKDNSELELKMEKVFQGTDeqlndlyhnhqrTVREKERELVDcQRELEKLNKERRLLNQEKTELLVEQGRlqlQADRH 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 808 GQQAARQRAELEELRQQLE----ESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLN 883
Cdd:TIGR00606 360 QEHIRARDSLIQSLATRLEldgfERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLG 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 884 REQELREEIRKGRDKEIELVIHR-----------LEADMALAKEES-----EKAAESRIKRLRDKY-EAELSELEQSERK 946
Cdd:TIGR00606 440 RTIELKKEILEKKQEELKFVIKElqqlegssdriLELDQELRKAERelskaEKNSLTETLKKEVKSlQNEKADLDRKLRK 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 947 LQERCSELkgqlgEAEGENL-RLQGLVRQKERALEDAQAVNEQLSSERSNLAQVI--RQEFEDRLAASEEETRQAKAELA 1023
Cdd:TIGR00606 520 LDQEMEQL-----NHHTTTRtQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFpnKKQLEDWLHSKSKEINQTRDRLA 594
|
410 420 430
....*....|....*....|....*....|.
gi 984880706 1024 TLQARQQlELEEVHRRVKTALARKEEAVSSL 1054
Cdd:TIGR00606 595 KLNKELA-SLEQNKNHINNELESKEEQLSSY 624
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
611-705 |
5.45e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 5.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 611 ALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAELKQEDQrctERVAQAQAQHELEIKKLKELMSATEKA 690
Cdd:PRK00409 527 ELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ---QAIKEAKKEADEIIKELRQLQKGGYAS 603
|
90
....*....|....*
gi 984880706 691 RREKWISEKTKKIKE 705
Cdd:PRK00409 604 VKAHELIEARKRLNK 618
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
635-996 |
7.59e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 7.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 635 DQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAqAQAQHELEIKKLKELMSATEKARRE--KWISEKTKKIKEVtVRGLE 712
Cdd:pfam01576 738 EQGEEKRRQLVKQVRELEAELEDERKQRAQAVA-AKKKLELDLKELEAQIDAANKGREEavKQLKKLQAQMKDL-QRELE 815
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 713 PEIQ---KLIARHKQEVRRLKSLhEAELLQSDER--ASQRCLRQAeelreqlerekealgQQERERARQRFQQHLEQEqw 787
Cdd:pfam01576 816 EARAsrdEILAQSKESEKKLKNL-EAELLQLQEDlaASERARRQA---------------QQERDELADEIASGASGK-- 877
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 788 alqqqrqrlySEVAEERERLGQQAARQRAELEELRQQLEESSsaltralraefekgreEQERRHQMELNTLKQQLELERQ 867
Cdd:pfam01576 878 ----------SALQDEKRRLEARIAQLEEELEEEQSNTELLN----------------DRLRKSTLQVEQLTTELAAERS 931
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 868 AWEAGRTRKEEAWLLNREQELR-EEIRKGRDKEIELVIHRLEADMA-----LAKEESEKAAESRIKRLRDKYEAELSELE 941
Cdd:pfam01576 932 TSQKSESARQQLERQNKELKAKlQEMEGTVKSKFKSSIAALEAKIAqleeqLEQESRERQAANKLVRRTEKKLKEVLLQV 1011
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 984880706 942 QSER-----------KLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNL 996
Cdd:pfam01576 1012 EDERrhadqykdqaeKGNSRMKQLKRQLEEAEEEASRANAARRKLQRELDDATESNESMNREVSTL 1077
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
600-1071 |
7.94e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.42 E-value: 7.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 600 LTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVL---SEKCEAVVAELKQEDQRCTERVAQAQAQHELE 676
Cdd:TIGR00606 354 LQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLvieRQEDEAKTAAQLCADLQSKERLKQEQADEIRD 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 677 IKKLKELMSATEKARREKWISEKTKKIKEVtvRGLEPEIQKLIARhKQEVRRlkslHEAELLQSDERASQRCLRQaeeLR 756
Cdd:TIGR00606 434 EKKGLGRTIELKKEILEKKQEELKFVIKEL--QQLEGSSDRILEL-DQELRK----AERELSKAEKNSLTETLKK---EV 503
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 757 EQLEREKEALGQQERERARQRFQQHLEQEQwalQQQRQRLYSEVAEERERLGQQAARQRAELEEL------RQQLEESSS 830
Cdd:TIGR00606 504 KSLQNEKADLDRKLRKLDQEMEQLNHHTTT---RTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLlgyfpnKKQLEDWLH 580
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 831 ALT----------RALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNreqeLREEIRKGR---- 896
Cdd:TIGR00606 581 SKSkeinqtrdrlAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLER----LKEEIEKSSkqra 656
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 897 ---------DKEIELVIHRLEADMALAKE--ESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGEN 965
Cdd:TIGR00606 657 mlagatavySQFITQLTDENQSCCPVCQRvfQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQ 736
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 966 LRLQGLVRQKERALEDAQAVNEQLSSERSNLAQvirQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTaLA 1045
Cdd:TIGR00606 737 SIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEE---QETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQ-QA 812
|
490 500
....*....|....*....|....*.
gi 984880706 1046 RKEEAVSSLRTQHEAAVKRADHLEEL 1071
Cdd:TIGR00606 813 AKLQGSDLDRTVQQVNQEKQEKQHEL 838
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
639-980 |
8.00e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 39.88 E-value: 8.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 639 EDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKL 718
Cdd:pfam07888 62 ERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 719 IARhkqevrrlKSLHEAELLQSDERAsQRCLRQAEELREQLEREKEALGQQERE-RARQRFQQHLEQEQWALQQQRQRLY 797
Cdd:pfam07888 142 TQR--------VLERETELERMKERA-KKAGAQRKEEEAERKQLQAKLQQTEEElRSLSKEFQELRNSLAQRDTQVLQLQ 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 798 SEVAEERERLGqQAARQRAELEELRQQLE------ESSSALTRALRAEFEKGREEQERRH------QMELNTLKQQLELE 865
Cdd:pfam07888 213 DTITTLTQKLT-TAHRKEAENEALLEELRslqerlNASERKVEGLGEELSSMAAQRDRTQaelhqaRLQAAQLTLQLADA 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 866 RQAWEAGRTRkeeaWLLNReQELREEIRKGRDKEIELVIHRLEADMALAKEESEK-AAESRIKRLRDKYEAELSEleqSE 944
Cdd:pfam07888 292 SLALREGRAR----WAQER-ETLQQSAEADKDRIEKLSAELQRLEERLQEERMEReKLEVELGREKDCNRVQLSE---SR 363
|
330 340 350
....*....|....*....|....*....|....*....
gi 984880706 945 RKLQERCSELKGQLGEAEGENLRLQGL---VRQKERALE 980
Cdd:pfam07888 364 RELQELKASLRVAQKEKEQLQAEKQELleyIRQLEQRLE 402
|
|
| PHA03252 |
PHA03252 |
DNA packaging tegument protein UL25; Provisional |
901-1012 |
9.74e-03 |
|
DNA packaging tegument protein UL25; Provisional
Pssm-ID: 223024 Cd Length: 589 Bit Score: 39.70 E-value: 9.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880706 901 ELVIHRLEADMALA-KEESEKAAESRIKRLRDKyeaelSELEQSERKLQERCSELKGQLGEAegENLRLQGLVRQKERAL 979
Cdd:PHA03252 28 EEDLRRLRDDSALRlRRYREDLLRDRLLRRRLG-----EELDDLQKRLQTECEDLRSRVSEA--EALLLHDASGGEGGGA 100
|
90 100 110
....*....|....*....|....*....|...
gi 984880706 980 EDAQAVNEQLSSERSNLAQVIRQEFEDRLAASE 1012
Cdd:PHA03252 101 TNGGEVNVDGGADRTWLAQSPERPADGGPSGER 133
|
|
| |
