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Conserved domains on  [gi|970936917|ref|NP_001305188|]
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SAP domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LAIKA pfam19256
LAIKA domain; This presumed domain is found exclusively in the CCAR1 protein.
 150-217 2.44e-27

LAIKA domain; This presumed domain is found exclusively in the CCAR1 protein.


:

Pssm-ID: 466012 [Multi-domain]  Cd Length: 68  Bit Score: 104.63  E-value: 2.44e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 970936917  150 LPKDKKILVFPSKSFKSGKFDCKVLSLSSLLDYRHDDNKENQFEVSLFAEAFKEMIERNAAFTIYETL 217
Cdd:pfam19256   1 LPAEPAILVRPNRLAKGGKFDCKSLSLDGLLDYREDDTKESTFEVSLFAELFHEMLQRDFGFTIYKAL 68
SAP smart00513
Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;
30-63 7.29e-09

Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;


:

Pssm-ID: 128789 [Multi-domain]  Cd Length: 35  Bit Score: 51.33  E-value: 7.29e-09
                           10        20        30
                   ....*....|....*....|....*....|....
gi 970936917    30 KSMKVAELRVELELRGLETKGIKTLLVQRLQTAL 63
Cdd:smart00513   2 AKLKVSELKDELKKRGLSTSGTKAELVDRLLEAL 35
PLN03124 super family cl33640
poly [ADP-ribose] polymerase; Provisional
 31-99 4.16e-03

poly [ADP-ribose] polymerase; Provisional


The actual alignment was detected with superfamily member PLN03124:

Pssm-ID: 215591 [Multi-domain]  Cd Length: 643  Bit Score: 40.21  E-value: 4.16e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 970936917  31 SMKVAELRVELELRGLETKGIKTLLVQRLQTALdTEKAAEASVAARDVEMRDAAENAVKQEGGEENPAA 99
Cdd:PLN03124   4 KLKVDELRAALAKRGLDTTGLKAALVRRLDDAI-AEDAKTASKSGTKSSAGRKKRRERQDDGDDEPVSP 71
 
Name Accession Description Interval E-value
LAIKA pfam19256
LAIKA domain; This presumed domain is found exclusively in the CCAR1 protein.
 150-217 2.44e-27

LAIKA domain; This presumed domain is found exclusively in the CCAR1 protein.


Pssm-ID: 466012 [Multi-domain]  Cd Length: 68  Bit Score: 104.63  E-value: 2.44e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 970936917  150 LPKDKKILVFPSKSFKSGKFDCKVLSLSSLLDYRHDDNKENQFEVSLFAEAFKEMIERNAAFTIYETL 217
Cdd:pfam19256   1 LPAEPAILVRPNRLAKGGKFDCKSLSLDGLLDYREDDTKESTFEVSLFAELFHEMLQRDFGFTIYKAL 68
SAP smart00513
Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;
30-63 7.29e-09

Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;


Pssm-ID: 128789 [Multi-domain]  Cd Length: 35  Bit Score: 51.33  E-value: 7.29e-09
                           10        20        30
                   ....*....|....*....|....*....|....
gi 970936917    30 KSMKVAELRVELELRGLETKGIKTLLVQRLQTAL 63
Cdd:smart00513   2 AKLKVSELKDELKKRGLSTSGTKAELVDRLLEAL 35
SAP pfam02037
SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding ...
 30-63 6.16e-07

SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.


Pssm-ID: 460424 [Multi-domain]  Cd Length: 35  Bit Score: 45.85  E-value: 6.16e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 970936917   30 KSMKVAELRVELELRGLETKGIKTLLVQRLQTAL 63
Cdd:pfam02037   2 SKLTVAELKEELRKRGLPTSGKKAELIERLQEYL 35
PLN03124 PLN03124
poly [ADP-ribose] polymerase; Provisional
 31-99 4.16e-03

poly [ADP-ribose] polymerase; Provisional


Pssm-ID: 215591 [Multi-domain]  Cd Length: 643  Bit Score: 40.21  E-value: 4.16e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 970936917  31 SMKVAELRVELELRGLETKGIKTLLVQRLQTALdTEKAAEASVAARDVEMRDAAENAVKQEGGEENPAA 99
Cdd:PLN03124   4 KLKVDELRAALAKRGLDTTGLKAALVRRLDDAI-AEDAKTASKSGTKSSAGRKKRRERQDDGDDEPVSP 71
 
Name Accession Description Interval E-value
LAIKA pfam19256
LAIKA domain; This presumed domain is found exclusively in the CCAR1 protein.
 150-217 2.44e-27

LAIKA domain; This presumed domain is found exclusively in the CCAR1 protein.


Pssm-ID: 466012 [Multi-domain]  Cd Length: 68  Bit Score: 104.63  E-value: 2.44e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 970936917  150 LPKDKKILVFPSKSFKSGKFDCKVLSLSSLLDYRHDDNKENQFEVSLFAEAFKEMIERNAAFTIYETL 217
Cdd:pfam19256   1 LPAEPAILVRPNRLAKGGKFDCKSLSLDGLLDYREDDTKESTFEVSLFAELFHEMLQRDFGFTIYKAL 68
SAP smart00513
Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;
30-63 7.29e-09

Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;


Pssm-ID: 128789 [Multi-domain]  Cd Length: 35  Bit Score: 51.33  E-value: 7.29e-09
                           10        20        30
                   ....*....|....*....|....*....|....
gi 970936917    30 KSMKVAELRVELELRGLETKGIKTLLVQRLQTAL 63
Cdd:smart00513   2 AKLKVSELKDELKKRGLSTSGTKAELVDRLLEAL 35
SAP pfam02037
SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding ...
 30-63 6.16e-07

SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.


Pssm-ID: 460424 [Multi-domain]  Cd Length: 35  Bit Score: 45.85  E-value: 6.16e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 970936917   30 KSMKVAELRVELELRGLETKGIKTLLVQRLQTAL 63
Cdd:pfam02037   2 SKLTVAELKEELRKRGLPTSGKKAELIERLQEYL 35
PLN03124 PLN03124
poly [ADP-ribose] polymerase; Provisional
 31-99 4.16e-03

poly [ADP-ribose] polymerase; Provisional


Pssm-ID: 215591 [Multi-domain]  Cd Length: 643  Bit Score: 40.21  E-value: 4.16e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 970936917  31 SMKVAELRVELELRGLETKGIKTLLVQRLQTALdTEKAAEASVAARDVEMRDAAENAVKQEGGEENPAA 99
Cdd:PLN03124   4 KLKVDELRAALAKRGLDTTGLKAALVRRLDDAI-AEDAKTASKSGTKSSAGRKKRRERQDDGDDEPVSP 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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