|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
741-1156 |
1.45e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 1.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 741 QERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEF-------EEAENDTRLH 813
Cdd:COG1196 336 EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELaaqleelEEAEEALLER 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 814 LQRNEVELEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLL 893
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 894 SLAKMGNEESSPGGSPRL-----SSGYTSSIHQDRDFSAK----IQTTEFDLGQAGFTDSGE--EREIVYLKEEVKSLRS 962
Cdd:COG1196 496 LLEAEADYEGFLEGVKAAlllagLRGLAGAVAVLIGVEAAyeaaLEAALAAALQNIVVEDDEvaAAAIEYLKAAKAGRAT 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 963 QLKELNARHYEAMETADSHWVD------LEQQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLE-----EG 1031
Cdd:COG1196 576 FLPLDKIRARAALAAALARGAIgaavdlVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREvtlegEG 655
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1032 ELSLKSCLVRMTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKmplTEALENERRKTQALMDDLIFAKKVQQNTEDQLRQ 1111
Cdd:COG1196 656 GSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA---LLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 939620210 1112 ETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMR 1156
Cdd:COG1196 733 EREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
740-1036 |
3.25e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 3.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 740 YQERLEQLEGKLLiyessgetqARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRNEV 819
Cdd:COG1196 218 LKEELKELEAELL---------LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 820 ELEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMG 899
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 900 NEESSpggsprlssgytssihqdrdfSAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEAMETAD 979
Cdd:COG1196 369 EAEAE---------------------LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 939620210 980 SHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDcLREDSRAATEKIQQLEEGELSLK 1036
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAAEEEAELEEEEEA-LLELLAELLEEAALLEAALAELL 483
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
771-1091 |
5.36e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 5.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 771 RELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDtrlhLQRNEVELEILRQRNVELEFGKEALGAKYQDCRAEVL 850
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAE----LEELEAELAELEAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 851 ILREDLAAAETQLEHLQAERKQARKELQDLRrslplllifrllslakmgneesspggsprlssgytssihqdrdfsAKIQ 930
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELE---------------------------------------------EELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 931 TTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEA---METADSHWVDLEQQYKEREEAQQAKEASLKQKI 1007
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAeaeLAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1008 AQLQDCLREDSRAATEK------IQQLEEGELSLKSCLVRMTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEAL 1081
Cdd:COG1196 407 EAEEALLERLERLEEELeeleeaLAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
330
....*....|
gi 939620210 1082 ENERRKTQAL 1091
Cdd:COG1196 487 AEAAARLLLL 496
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
736-1011 |
9.96e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 9.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 736 HLQFYQERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQ 815
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 816 RNEVELEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSL 895
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 896 AKMGNEEsspggsprlssgytSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEAM 975
Cdd:COG1196 393 RAAAELA--------------AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270
....*....|....*....|....*....|....*.
gi 939620210 976 ETADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQ 1011
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
|
| JAKMIP_CC3 |
pfam16034 |
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP ... |
516-595 |
1.85e-08 |
|
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP family (Janus kinase and microtubule-interacting proteins) and is predicted to be a coiled coil. It interacts with the Janus family kinases Tyk2 and Jak1.
Pssm-ID: 464986 [Multi-domain] Cd Length: 199 Bit Score: 56.04 E-value: 1.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 516 EAEMYQKENERLQTEVQLMKQELDAAEKAAISRA-------KKQAQIG---ELMQRIKELEEMQSSLEDEASELREQNEL 585
Cdd:pfam16034 101 DAEREAKTREQLQAELRRAQSRIEDLESALAQKGqdskwveEKQALIRrnqELVEKIRIMEQEEGRLKNEIQDARDQNEL 180
|
90
....*....|
gi 939620210 586 LEFRILELED 595
Cdd:pfam16034 181 LEFRILELEE 190
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
947-1188 |
6.93e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 6.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 947 EREIVYLKEEVKSLRSQLKELNARHYEA---METADSHWVDLEQQ---YKEREEAQQAKEASLKQKIAQL---QDCLRED 1017
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDAsrkIGEIEKEIEQLEQEeekLKERLEELEEDLSSLEQEIENVkseLKELEAR 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1018 SRAATEKIQQLEEGELSLKSCLVR-MTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDDLi 1096
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDLEARLSHsRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL- 845
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1097 fakkvqQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERARCLEDELRTKDEQC 1176
Cdd:TIGR02169 846 ------KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919
|
250
....*....|..
gi 939620210 1177 QLLERKLGVMPE 1188
Cdd:TIGR02169 920 SELKAKLEALEE 931
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
773-1095 |
1.63e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 1.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 773 LQLEKDLKELADRVELLIEQNAQLEEAkcefeeaendtrlhLQRNEVELEILRQRNVELEFGKEALGAKYQDCRAEVLIL 852
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKA--------------LAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 853 REDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMGNEESSPGgspRLSSGYTSSIHQDRDFSAKIQTT 932
Cdd:TIGR02168 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE---QLKEELKALREALDELRAELTLL 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 933 EFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEAMETADSHWVDLEQQYKEREEAQQAKE------ASLKQK 1006
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAsleealALLRSE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1007 IAQLQDCLREDSRAATEKIQQLEEGELSLKSCLVRMTKehrdllTENRtLQCSLESLMAKMEKEAEHKMPLTEALENERR 1086
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEELREKLAQLELRLEG------LEVR-IDNLQERLSEEYSLTLEEAEALENKIEDDEE 968
|
....*....
gi 939620210 1087 KTQALMDDL 1095
Cdd:TIGR02168 969 EARRRLKRL 977
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
741-1031 |
1.75e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 1.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 741 QERLEQLEGKLLIYESSGEtQARHLAQRLQREL-QLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLhlqrnev 819
Cdd:TIGR02168 697 EKALAELRKELEELEEELE-QLRKELEELSRQIsALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE------- 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 820 ELEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMG 899
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 900 NEESSpggsprlSSGYTSSIHQDRDFSAKIqttefdlgqagftdsgeEREIVYLKEEVKSLRSQLKELNARHYEAMET-- 977
Cdd:TIGR02168 849 ELSED-------IESLAAEIEELEELIEEL-----------------ESELEALLNERASLEEALALLRSELEELSEElr 904
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 939620210 978 -ADSHWVDLEQQYKEREEAQ---QAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEG 1031
Cdd:TIGR02168 905 eLESKRSELRRELEELREKLaqlELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENK 962
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
780-1158 |
1.77e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 780 KELADRVELLIEQNAQLEEAKCEFEEAEndtrLHLQRNEVELEILRQRNVELEFGKEALgAKYQDCRA-----EVLILRE 854
Cdd:TIGR02169 156 RKIIDEIAGVAEFDRKKEKALEELEEVE----ENIERLDLIIDEKRQQLERLRREREKA-ERYQALLKekreyEGYELLK 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 855 DLAAAETQLEHLQAERKQARKELQDL--RRSLPLLLIFRLLSLAKMGNEESSPGGSPRLssgytssihqdRDFSAKIQTT 932
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLteEISELEKRLEEIEQLLEELNKKIKDLGEEEQ-----------LRVKEKIGEL 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 933 EFDLGQAgftdsgeEREIVYLKEEVKSLRSQLKELNARHYEAMETADSHWVDLEQQYKERE---EAQQAKEASLKQKIAQ 1009
Cdd:TIGR02169 300 EAEIASL-------ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDkltEEYAELKEELEDLRAE 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1010 LQDcLREDSRAATEKIQQLEEGelslkscLVRMTKEHRDLLTENRTLQcslESLMAKMEKEAEHKMPLtEALENERRKTQ 1089
Cdd:TIGR02169 373 LEE-VDKEFAETRDELKDYREK-------LEKLKREINELKRELDRLQ---EELQRLSEELADLNAAI-AGIEAKINELE 440
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 939620210 1090 ALMDDLIFAKKVQQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDS 1158
Cdd:TIGR02169 441 EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGG 509
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
741-1180 |
2.48e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.43 E-value: 2.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 741 QERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVEL-------LIEQNAQLEEAKCEFEEAENDTRLH 813
Cdd:PRK02224 257 EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLddadaeaVEARREELEDRDEELRDRLEECRVA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 814 LQRNEVELEILRQ-------RNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQA-------ERKQARKELQD 879
Cdd:PRK02224 337 AQAHNEEAESLREdaddleeRAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRErfgdapvDLGNAEDFLEE 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 880 LRRSLPLLLIFRLLSLAKMGNEESSPGGSPRLSSgytssihqdrdfSAKIQTTEFDLGQAGFTDSGEERE--IVYLKEEV 957
Cdd:PRK02224 417 LREERDELREREAELEATLRTARERVEEAEALLE------------AGKCPECGQPVEGSPHVETIEEDRerVEELEAEL 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 958 KSLRSQLKELNARH---YEAMETAD---------SHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKI 1025
Cdd:PRK02224 485 EDLEEEVEEVEERLeraEDLVEAEDrierleerrEDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAE 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1026 QQLEEGELSLKSCLVRMT--KEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEaLENERRKTQALMDDLI--FAKKV 1101
Cdd:PRK02224 565 EEAEEAREEVAELNSKLAelKERIESLERIRTLLAAIADAEDEIERLREKREALAE-LNDERRERLAEKRERKreLEAEF 643
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 939620210 1102 QQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENqmrdseerarcLEDELRTKDEQCQLLE 1180
Cdd:PRK02224 644 DEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEE-----------LRERREALENRVEALE 711
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
508-1157 |
6.73e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 6.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 508 QDLDKLQKEAEMYQKENERLQTEVQLMKQELDAAEKAAISRAKK----QAQIGELMQRIKELEEMQSSLEDEASELREQN 583
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEeyelLAELARLEQDIARLEERRRELEERLEELEEEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 584 ELLEFRILELEDDSDKMESTCEGHCQSLQDLLEQSAQRLEDRDKRCLQQLLQCVQQLDLdtmmpgdQNRTETPKRHNSTH 663
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL-------AEELLEALRAAAEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 664 SHSHSHSHSqshnhrivatvqpysncatptapptpskrhcnqvsswqssslsesgvfvecdllsnpnpighpHLQFYQER 743
Cdd:COG1196 399 AAQLEELEE---------------------------------------------------------------AEEALLER 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 744 LEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRNEVELEI 823
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 824 LRQRNVELEF-----GKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAER------------KQARKELQDLRRSLPL 886
Cdd:COG1196 496 LLEAEADYEGflegvKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAlqnivveddevaAAAIEYLKAAKAGRAT 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 887 LLIFRLLSLAKMGNEESSPGGSPRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKE 966
Cdd:COG1196 576 FLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEG 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 967 LNARhyeAMETADShwvdlEQQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEGELSLKSCLVRMTKEH 1046
Cdd:COG1196 656 GSAG---GSLTGGS-----RRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1047 RDLLTENR---TLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDDLifaKKVQQNTEDQLRQET---DALRTQi 1120
Cdd:COG1196 728 EQLEAEREellEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL---GPVNLLAIEEYEELEeryDFLSEQ- 803
|
650 660 670
....*....|....*....|....*....|....*..
gi 939620210 1121 fniKKDylhievtngeLKEEVGTLENKIRQMENQMRD 1157
Cdd:COG1196 804 ---RED----------LEEARETLEEAIEEIDRETRE 827
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
738-1072 |
2.73e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 2.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 738 QFYQERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRN 817
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 818 EVELEILRQRnvelefgKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAK 897
Cdd:TIGR02168 823 RERLESLERR-------IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 898 MgneesspggsprlssgytssihqdRDFSAKIQTTEFDLGQAgftdsgeEREIVYLKEEVKSLRSQLKELNARHYEAMET 977
Cdd:TIGR02168 896 L------------------------EELSEELRELESKRSEL-------RRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 978 ADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEgelsLKSCLVRMTKEHRDlLTENRTlq 1057
Cdd:TIGR02168 945 LSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEE----LKERYDFLTAQKED-LTEAKE-- 1017
|
330
....*....|....*
gi 939620210 1058 cSLESLMAKMEKEAE 1072
Cdd:TIGR02168 1018 -TLEEAIEEIDREAR 1031
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
741-1182 |
3.12e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 3.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 741 QERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRNEVE 820
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 821 LEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMGN 900
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 901 EESSpggsprlssgYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEAMETADS 980
Cdd:COG1196 419 LEEE----------LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 981 ----HWVDLEQQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEGELSLKSCLVRmtkehRDLLTENRTL 1056
Cdd:COG1196 489 aaarLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVV-----EDDEVAAAAI 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1057 QCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMD-DLIFAKKVQQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNG 1135
Cdd:COG1196 564 EYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAvDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA 643
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 939620210 1136 ELKEEV---GTLENKIRQMENQMRDSEERARCLEDELRTKDEQCQLLERK 1182
Cdd:COG1196 644 GRLREVtleGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
737-1016 |
3.40e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 3.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 737 LQFYQERLEQLEGKLLIYESsgETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAEND--TRLH- 813
Cdd:TIGR02168 215 YKELKAELRELELALLVLRL--EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEElqKELYa 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 814 ----LQRNEVELEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLI 889
Cdd:TIGR02168 293 laneISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 890 FRLLSLAKMGneesspggspRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAG-----FTDSGEEREIVYLKEEVKSLRSQL 964
Cdd:TIGR02168 373 RLEELEEQLE----------TLRSKVAQLELQIASLNNEIERLEARLERLEdrrerLQQEIEELLKKLEEAELKELQAEL 442
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 939620210 965 KELNARHYEAMETADSHWVDLEQQYKEREEAQQA------KEASLKQKIAQLQDCLRE 1016
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEEAEQAldaaerELAQLQARLDSLERLQEN 500
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
736-883 |
8.93e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 8.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 736 HLQFYQERLEQLEGKLLIYEssgetqarhlAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENdtrlhlq 815
Cdd:TIGR02168 303 QKQILRERLANLERQLEELE----------AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA------- 365
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 939620210 816 rnevELEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRS 883
Cdd:TIGR02168 366 ----ELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
741-1183 |
9.55e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 9.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 741 QERLEQLEGKLliyessGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRNEVE 820
Cdd:PRK02224 186 RGSLDQLKAQI------EEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 821 LEILRQRNVELEFGKEALGAKYQDCRAEVLILREDL--AAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKM 898
Cdd:PRK02224 260 IEDLRETIAETEREREELAEEVRDLRERLEELEEERddLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQA 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 899 GNEEsspggsprlSSGYTSSIHQDRDFSAKIQTTEFDLgqagftdsgeEREIVYLKEEVKSLRSQLKELNARHYEAMETA 978
Cdd:PRK02224 340 HNEE---------AESLREDADDLEERAEELREEAAEL----------ESELEEAREAVEDRREEIEELEEEIEELRERF 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 979 DSHWVDLEQQYKEREEAQQAKEAsLKQKIAQLQDCLREDSRAATEKIQQLEEG---------ELSLKSCLVRMTKEHRDL 1049
Cdd:PRK02224 401 GDAPVDLGNAEDFLEELREERDE-LREREAELEATLRTARERVEEAEALLEAGkcpecgqpvEGSPHVETIEEDRERVEE 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1050 LTENR-TLQCSLESLMAKME-----KEAEHKMpltEALENERRKTQALMDDLIFAKKVQQNTEDQLRQETDALRTQIFNI 1123
Cdd:PRK02224 480 LEAELeDLEEEVEEVEERLEraedlVEAEDRI---ERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEK 556
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1124 KKDYLHIEVTNGELKEEVGTLENKiRQMENQMRDSEERARCLEDELRTKDEQCQLLERKL 1183
Cdd:PRK02224 557 REAAAEAEEEAEEAREEVAELNSK-LAELKERIESLERIRTLLAAIADAEDEIERLREKR 615
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
793-1170 |
1.05e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 793 NAQLEEAKCEFEEAENDTRLHLQRNEVELEILRQRnvelefgkEALgAKYQDCRAEVlilredlaaaETQLEHLQAERKQ 872
Cdd:TIGR02168 151 EAKPEERRAIFEEAAGISKYKERRKETERKLERTR--------ENL-DRLEDILNEL----------ERQLKSLERQAEK 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 873 ArKELQDLRRSLPLLLIFRLLSLAKMGNEESSpggspRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREIVY 952
Cdd:TIGR02168 212 A-ERYKELKAELRELELALLVLRLEELREELE-----ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 953 LKEEVKSLRSQLKELNAR---HYEAMETADSHWVDLE---QQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQ 1026
Cdd:TIGR02168 286 LQKELYALANEISRLEQQkqiLRERLANLERQLEELEaqlEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1027 QLEEGELSLKSClvrmTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDDLIFAKKvqqnte 1106
Cdd:TIGR02168 366 ELEELESRLEEL----EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL------ 435
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 939620210 1107 DQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERARCLEDELR 1170
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE 499
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
741-1183 |
1.88e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 741 QERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRNEVE 820
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 821 LEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMGN 900
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 901 EESspggsprlssgytssihQDRDFSAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEAMETADS 980
Cdd:COG1196 440 EEE-----------------ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 981 HWVDLEQQYKEREEAQQAKEASLKQKI----------------AQLQDCLREDSRAATEKIQQLEEGELSLKSCLVRMTK 1044
Cdd:COG1196 503 YEGFLEGVKAALLLAGLRGLAGAVAVLigveaayeaaleaalaAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKI 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1045 EHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQAlmDDLIFAKKVQQNTEDQLRQETDALRTQIFNIK 1124
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV--AARLEAALRRAVTLAGRLREVTLEGEGGSAGG 660
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 939620210 1125 KDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERARCLEDELRTKDEQCQLLERKL 1183
Cdd:COG1196 661 SLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
947-1183 |
1.91e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 947 EREIVYLKEEVKSLRSQLKELNARhyeaMETADSHWVDLEQQYKERE---EAQQAKEASLKQKIAQLQ---DCLREDSRA 1020
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAE----LAELEAELEELRLELEELElelEEAQAEEYELLAELARLEqdiARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1021 ATEKIQQLEEGELSLKsclvrmtKEHRDLLTENRTLQCSLESLMAKMEKEAEHKmpltEALENERRKTQALMDDLIFAKK 1100
Cdd:COG1196 314 LEERLEELEEELAELE-------EELEELEEELEELEEELEEAEEELEEAEAEL----AEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1101 VQQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERARCLEDELRTKDEQCQLLE 1180
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
...
gi 939620210 1181 RKL 1183
Cdd:COG1196 463 ELL 465
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
759-882 |
3.09e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 3.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 759 ETQARHLAQRLQrelQLEKDLKELADRVELLIEQNAQLEEAKcEFEEAENDT---RLHLQRNEVELEILRQRNVELefgk 835
Cdd:COG4913 616 EAELAELEEELA---EAEERLEALEAELDALQERREALQRLA-EYSWDEIDVasaEREIAELEAELERLDASSDDL---- 687
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 939620210 836 EALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRR 882
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQD 734
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
755-880 |
4.52e-05 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 47.76 E-value: 4.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 755 ESSGETQARHLAQRLQRELQLEKDLKELADRvellieqnaqLEEAKCEFEEAENDTRLHLQR---NEVELEILRQRNVEL 831
Cdd:COG0497 239 EGGALDLLGQALRALERLAEYDPSLAELAER----------LESALIELEEAASELRRYLDSlefDPERLEEVEERLALL 308
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 939620210 832 EfgkeALGAKYQDCRAEVLILREDLAA-------AETQLEHLQAERKQARKELQDL 880
Cdd:COG0497 309 R----RLARKYGVTVEELLAYAEELRAelaelenSDERLEELEAELAEAEAELLEA 360
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
736-1212 |
7.42e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 7.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 736 HLQFYQERLEQLEGKLLIYESSgETQARHLAQRLQRELQLEKDLKELAD---RVELLIEQNAQLEEAKCEFEEAENDtrl 812
Cdd:COG4717 89 EYAELQEELEELEEELEELEAE-LEELREELEKLEKLLQLLPLYQELEAleaELAELPERLEELEERLEELRELEEE--- 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 813 hLQRNEVELEILRQR-NVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFR 891
Cdd:COG4717 165 -LEELEAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 892 LLSLAkmgneesspggspRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARH 971
Cdd:COG4717 244 RLKEA-------------RLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 972 YEAMETADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEGELS--LKSCLVRMTKEHRDL 1049
Cdd:COG4717 311 PALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAalLAEAGVEDEEELRAA 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1050 LTENRTLQcsleslmaKMEKEAEHkmpLTEALENERRKTQALMDDLifakkvqqnTEDQLRQETDALRTQIFNIKKDYlh 1129
Cdd:COG4717 391 LEQAEEYQ--------ELKEELEE---LEEQLEELLGELEELLEAL---------DEEELEEELEELEEELEELEEEL-- 448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1130 ievtnGELKEEVGTLENKIRQMENQMRDSEerarcLEDELRTKDEQCQLLERKLGVmpegYSLADELHDSPAKRAKKDEV 1209
Cdd:COG4717 449 -----EELREELAELEAELEQLEEDGELAE-----LLQELEELKAELRELAEEWAA----LKLALELLEEAREEYREERL 514
|
...
gi 939620210 1210 PSL 1212
Cdd:COG4717 515 PPV 517
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
508-1163 |
1.22e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 508 QDLDKLQKEAEMYQKENERLQTEVQLMKQELDAAEKaaiSRAKKQAQIGELMQRIKELEEMQSSLEDEASELREQNELLE 587
Cdd:TIGR02168 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELES---KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 588 FRILELEDDSDKMES----------TCEGHCQSLQDLLEQSAQRLEDRDKRCLQQLLQCVQQLDLDTMMPGDQNRTETPK 657
Cdd:TIGR02168 372 SRLEELEEQLETLRSkvaqlelqiaSLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 658 RHNSTHSHSHSHSHSQSHNHRIVATVQPYSNCAtptapptpsKRHCNQVSSWQSSSLSESGVFVECDLLSNPNPIGHPHL 737
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAEREL---------AQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIL 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 738 QFYQERLE-----------QLEGKLLIYESSGETQAR----HLAQ-RLQR----ELQLEKDLKELADRVELLIEQNAQLE 797
Cdd:TIGR02168 523 GVLSELISvdegyeaaieaALGGRLQAVVVENLNAAKkaiaFLKQnELGRvtflPLDSIKGTEIQGNDREILKNIEGFLG 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 798 EAKcEFEEAENDTRLHLQ----------RNEVELEILRQ-----RNVELE-----------FGKEALGAKYQDCRAEVLI 851
Cdd:TIGR02168 603 VAK-DLVKFDPKLRKALSyllggvlvvdDLDNALELAKKlrpgyRIVTLDgdlvrpggvitGGSAKTNSSILERRREIEE 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 852 LREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMGNEESspggsprlssgytssihQDRDFSAKIQT 931
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK-----------------DLARLEAEVEQ 744
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 932 TEFDLGQagftdsgEEREIVYLKEEVKSLRSQLKELNarhyEAMETADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQ 1011
Cdd:TIGR02168 745 LEERIAQ-------LSKELTELEAEIEELEERLEEAE----EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1012 DcLREDSRAATEKIQQLEEGELSLKSCLVRMTKEHRDL---LTENRTLQCSLESLMAKMEKEAEHkmplteaLENERRKT 1088
Cdd:TIGR02168 814 L-LNEEAANLRERLESLERRIAATERRLEDLEEQIEELsedIESLAAEIEELEELIEELESELEA-------LLNERASL 885
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 939620210 1089 QALMDDLIFAKKVQQNTEDQLRQETDALRTQIfnikkdylhievtnGELKEEVGTLENKIRQMENQMRDSEERAR 1163
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRREL--------------EELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| HlpA |
COG2825 |
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope ... |
512-587 |
1.59e-04 |
|
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442073 [Multi-domain] Cd Length: 171 Bit Score: 43.67 E-value: 1.59e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 939620210 512 KLQKEAEMYQKENERLQTEVQLMKQELDaAEKAAISRAKKQAQIGELMQRIKELEEMQSSLEDEASelREQNELLE 587
Cdd:COG2825 47 KLEKEFKKRQAELQKLEKELQALQEKLQ-KEAATLSEEERQKKERELQKKQQELQRKQQEAQQDLQ--KRQQELLQ 119
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
761-971 |
1.87e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 761 QARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKcefeeaendTRLHLQRNEVELEILRQRNVELEFGKEALGA 840
Cdd:COG4913 239 RAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLR---------AALRLWFAQRRLELLEAELEELRAELARLEA 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 841 KYQDCRAEVLILREDLAAAETQ--------LEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMGNEEsspggsprls 912
Cdd:COG4913 310 ELERLEARLDALREELDELEAQirgnggdrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASA---------- 379
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 939620210 913 SGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREivyLKEEVKSLRSQLKELNARH 971
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEALEEALAEAEAALRD---LRRELRELEAEIASLERRK 435
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
953-1162 |
2.73e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 953 LKEEVKSLRSQLKELNARHYEAMETADSHWVDLEQQyKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEGE 1032
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL-ERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1033 LSLKSCLVRMTKEHR-----------DLLTENRTLQcSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDDLIFAKKV 1101
Cdd:COG4942 104 EELAELLRALYRLGRqpplalllspeDFLDAVRRLQ-YLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 939620210 1102 QQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERA 1162
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
754-1028 |
3.18e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 3.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 754 YESSGETQARHLAQRLQR---ELQLEKDLKELADRVELLieqNAQLEEAKCEFEEAENdtrlhlqrnevELEILRQRNVE 830
Cdd:COG3206 142 YTSPDPELAAAVANALAEaylEQNLELRREEARKALEFL---EEQLPELRKELEEAEA-----------ALEEFRQKNGL 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 831 LEFGKEALgakyqdcraevlILREDLAAAETQLEHLQAERKQARKELQDLRRslplllifrllSLAKMGNEESSPGGSPR 910
Cdd:COG3206 208 VDLSEEAK------------LLLQQLSELESQLAEARAELAEAEARLAALRA-----------QLGSGPDALPELLQSPV 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 911 LSsgytssihqdrDFSAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEAMETADSHWVDLEQQYK 990
Cdd:COG3206 265 IQ-----------QLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQ 333
|
250 260 270
....*....|....*....|....*....|....*...
gi 939620210 991 EREEAQQAKEASLKQKIAQLQDcLREDSRAATEKIQQL 1028
Cdd:COG3206 334 AQLAQLEARLAELPELEAELRR-LEREVEVARELYESL 370
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
771-1011 |
4.29e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 4.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 771 RELQLEKdlKELADRVELLIEQNAQLEEAKCEFEEAEN--DTRLHLQRNEVELEILRQRNVELEFGKEALGA-----KYQ 843
Cdd:COG4913 214 REYMLEE--PDTFEAADALVEHFDDLERAHEALEDAREqiELLEPIRELAERYAAARERLAELEYLRAALRLwfaqrRLE 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 844 DCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSlplllifrllslakmgneesspggspRLSSGYtssihqDR 923
Cdd:COG4913 292 LLEAELEELRAELARLEAELERLEARLDALREELDELEAQ--------------------------IRGNGG------DR 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 924 --DFSAKIQTTEFDLGQAgftdsgeEREIVYLKEEVKSL-------RSQLKELNARHYEAMETADSHWVDLEQQY---KE 991
Cdd:COG4913 340 leQLEREIERLERELEER-------ERRRARLEALLAALglplpasAEEFAALRAEAAALLEALEEELEALEEALaeaEA 412
|
250 260
....*....|....*....|
gi 939620210 992 REEAQQAKEASLKQKIAQLQ 1011
Cdd:COG4913 413 ALRDLRRELRELEAEIASLE 432
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
762-880 |
4.91e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 4.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 762 ARHLAQRLQREL-QLEKDLKELADRVELLIEQNAQLEEAKC------EFEEAENDT---RLHLQRNEVELEILRQRNVE- 830
Cdd:COG4913 608 NRAKLAALEAELaELEEELAEAEERLEALEAELDALQERREalqrlaEYSWDEIDVasaEREIAELEAELERLDASSDDl 687
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 939620210 831 --LEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDL 880
Cdd:COG4913 688 aaLEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAA 739
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
926-1130 |
7.01e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 7.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 926 SAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEAMETADSHWVDLEQQYKEREEAQQAKEASLKQ 1005
Cdd:COG4913 266 AARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLER 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1006 KIAQLQDCLREDSRAATEKIQQLEEGELSLksclvrmtKEHRDLLTENRtlqcsleslmakmeKEAEHkmpLTEALENER 1085
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPL--------PASAEEFAALR--------------AEAAA---LLEALEEEL 400
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 939620210 1086 RKTQALMDDLIFAKKVQQNTEDQLRQETDALRTQIFNIKKDYLHI 1130
Cdd:COG4913 401 EALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL 445
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
508-629 |
1.49e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 508 QDLDKLQKEAEMYQKENERLQTEVQLMKQELDAAEKAA------ISRAKKQAQIGELMQRIKELEEMQS---SLEDEASE 578
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAELDALQERREALQRLAeyswdeIDVASAEREIAELEAELERLDASSDdlaALEEQLEE 696
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 939620210 579 LREQNELLEFRILELEDDsdkmESTCEGHCQSLQDLLEQSAQRLEDRDKRC 629
Cdd:COG4913 697 LEAELEELEEELDELKGE----IGRLEKELEQAEEELDELQDRLEAAEDLA 743
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
988-1228 |
1.51e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 988 QYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEGELSLksclVRMTKEHRDLLTENRTLQCSLESLMAKM 1067
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI----GEIEKEIEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1068 EKeaehkmpLTEALENERRKTQALMDDLifakkvqqnteDQLRQETDALRTQIFNIKKDYLHIEVTN-----GELKEEVG 1142
Cdd:TIGR02169 747 SS-------LEQEIENVKSELKELEARI-----------EELEEDLHKLEEALNDLEARLSHSRIPEiqaelSKLEEEVS 808
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1143 TLENKIRQMENQMRDSEERARCLEDELRTKDEQCQLLERKLGvmpegySLADELHDSPAKRAKKD-EVPSLQAASQGLGV 1221
Cdd:TIGR02169 809 RIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK------SIEKEIENLNGKKEELEeELEELEAALRDLES 882
|
....*..
gi 939620210 1222 ALLDLEG 1228
Cdd:TIGR02169 883 RLGDLKK 889
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
984-1183 |
1.92e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 984 DLEQQYKEREEAQQAKEASLKQKIAQLQDcLREDSRAATEKIQQLEEGELSLKSCLVRMTKEHRDLLTENRTLQCSLESL 1063
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAA-LERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1064 MAKMEKEAEHkmPLTEALENERRKTQALMDDLIFAKKVQQNTE--DQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEV 1141
Cdd:COG4942 110 LRALYRLGRQ--PPLALLLSPEDFLDAVRRLQYLKYLAPARREqaEELRADLAELAALRAELEAERAELEALLAELEEER 187
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 939620210 1142 GTLENKIRQMENQMRDSEERARCLEDELRTKDEQCQLLERKL 1183
Cdd:COG4942 188 AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
741-1088 |
2.02e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 741 QERLEQLEGKLLIYESSGETQARHLAQrLQRELQ-LEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRNEV 819
Cdd:TIGR02169 715 SRKIGEIEKEIEQLEQEEEKLKERLEE-LEEDLSsLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI 793
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 820 eleilrqrnvelefgkEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMG 899
Cdd:TIGR02169 794 ----------------PEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 900 NeesspggsprlssgytsSIHQDRDFSAKIQTTEFDLGQAgftdsgeEREIVYLKEEVKSLRSQLKELNARHYEAMETAD 979
Cdd:TIGR02169 858 N-----------------LNGKKEELEEELEELEAALRDL-------ESRLGDLKKERDELEAQLRELERKIEELEAQIE 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 980 shwvdleqQYKEREEAQQAKEASLKQKIAQLQDCLREDS---------RAATEKIQQLEEGELSLKSCLVRMTKEHRDll 1050
Cdd:TIGR02169 914 --------KKRKRLSELKAKLEALEEELSEIEDPKGEDEeipeeelslEDVQAELQRVEEEIRALEPVNMLAIQEYEE-- 983
|
330 340 350
....*....|....*....|....*....|....*...
gi 939620210 1051 TENRtlQCSLESLMAKMEKEAEHKMPLTEALENERRKT 1088
Cdd:TIGR02169 984 VLKR--LDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
736-882 |
2.12e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 736 HLQFYQERLEQLEGKLliyessgeTQARHLAQRLQREL-QLEKDLKELADRVELLIEQ-----NAQLEEAKCEFEEAEND 809
Cdd:COG4913 282 RLWFAQRRLELLEAEL--------EELRAELARLEAELeRLEARLDALREELDELEAQirgngGDRLEQLEREIERLERE 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 810 TRLHLQRNEVELEILRQRNVELEFGKEALGAKYQDCRAEVL-------ILREDLAAAETQLEHLQAERKQARKELQDLRR 882
Cdd:COG4913 354 LEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEaleeeleALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
505-879 |
2.22e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 505 QTLQDLDKLQKEAEMYQKENERLQTEVQLMKQELDAA------EKAAISRAKKQAQIGELMQRIKELEEMQSSLEDEASE 578
Cdd:COG4717 92 ELQEELEELEEELEELEAELEELREELEKLEKLLQLLplyqelEALEAELAELPERLEELEERLEELRELEEELEELEAE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 579 LREQNELLEfriLELEDDSDKMESTCEGHCQSLQDLlEQSAQRLEDRDKRCLQQLLQCVQQLDLDTMMPGDQNRTETPKR 658
Cdd:COG4717 172 LAELQEELE---ELLEQLSLATEEELQDLAEELEEL-QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKE 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 659 HNSTHSHSHSHSHSQSHNHRIVATVQPYSNCAT----------------PTAPPTPSKRHCNQVSSWQSSSLSESGVFVE 722
Cdd:COG4717 248 ARLLLLIAAALLALLGLGGSLLSLILTIAGVLFlvlgllallflllareKASLGKEAEELQALPALEELEEEELEELLAA 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 723 CDLLSNPNPIGHP-------HLQFYQERLEQLEGKLLI-------------YESSGETQARHLAQRLQRELQLEKDLKEL 782
Cdd:COG4717 328 LGLPPDLSPEELLelldrieELQELLREAEELEEELQLeeleqeiaallaeAGVEDEEELRAALEQAEEYQELKEELEEL 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 783 ADRVELLIEQNAQLEEA--KCEFEEAENDTRLHLQRNEVELEILRQRNVELEFGKEALG---------AKYQDCRAEVLI 851
Cdd:COG4717 408 EEQLEELLGELEELLEAldEEELEEELEELEEELEELEEELEELREELAELEAELEQLEedgelaellQELEELKAELRE 487
|
410 420
....*....|....*....|....*...
gi 939620210 852 LREDLAAAETQLEHLQAERKQARKELQD 879
Cdd:COG4717 488 LAEEWAALKLALELLEEAREEYREERLP 515
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
515-587 |
2.88e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.12 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 515 KEAEMYQKENERLQTEVQLMKQELDAAEKAAISRAKKQAQI------GELMQRIKELEEMQSS---------LEDEASEL 579
Cdd:PRK00409 537 EEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQaikeakKEADEIIKELRQLQKGgyasvkaheLIEARKRL 616
|
....*...
gi 939620210 580 REQNELLE 587
Cdd:PRK00409 617 NKANEKKE 624
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
767-1089 |
3.08e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 3.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 767 QRLQRELQlEKDLKELADRVELLIEQNAQLEEAKCEFEEaendtrlHLQRNEVELEILRQRNVELEFGKEALGAKYQD-C 845
Cdd:TIGR02169 214 QALLKEKR-EYEGYELLKEKEALERQKEAIERQLASLEE-------ELEKLTEEISELEKRLEEIEQLLEELNKKIKDlG 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 846 RAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMgneesspggsprlssgytssihqdRDF 925
Cdd:TIGR02169 286 EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI------------------------EEL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 926 SAKIQTtefdlgQAGFTDSGEErEIVYLKEEVKSLRSQLKELNARHYEametadshWVDLEQQYKEREEAQQAKEASLKQ 1005
Cdd:TIGR02169 342 EREIEE------ERKRRDKLTE-EYAELKEELEDLRAELEEVDKEFAE--------TRDELKDYREKLEKLKREINELKR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1006 KIAQLQDCLREdsraATEKIQQLEEGELSLKSCLVRMTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTE---ALE 1082
Cdd:TIGR02169 407 ELDRLQEELQR----LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEeydRVE 482
|
....*..
gi 939620210 1083 NERRKTQ 1089
Cdd:TIGR02169 483 KELSKLQ 489
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
737-1119 |
3.48e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 3.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 737 LQFYQERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQr 816
Cdd:pfam15921 453 IQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQ- 531
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 817 nevELEILRQ-----RNVELEFgkEALGAKYQDCRAEVLILREDLAAAeTQL--EH------LQAERKQARKELQDLRRS 883
Cdd:pfam15921 532 ---ELQHLKNegdhlRNVQTEC--EALKLQMAEKDKVIEILRQQIENM-TQLvgQHgrtagaMQVEKAQLEKEINDRRLE 605
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 884 LPLLLIFRLLSLAKMGNEESS------------PGGSPRLSSgyTSSIHQDRD-FSAKIQTT---------EFDLGQAGF 941
Cdd:pfam15921 606 LQEFKILKDKKDAKIRELEARvsdlelekvklvNAGSERLRA--VKDIKQERDqLLNEVKTSrnelnslseDYEVLKRNF 683
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 942 TDSGEEREIVY--LKEEVKSLRSQLkELNARHYEAMETADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDCLredSR 1019
Cdd:pfam15921 684 RNKSEEMETTTnkLKMQLKSAQSEL-EQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAM---TN 759
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1020 AATEKIQQLEEGElslksclvRMTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDdlIFAK 1099
Cdd:pfam15921 760 ANKEKHFLKEEKN--------KLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQD--IIQR 829
|
410 420
....*....|....*....|
gi 939620210 1100 KVQQNTEDQLRQETDALRTQ 1119
Cdd:pfam15921 830 QEQESVRLKLQHTLDVKELQ 849
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
741-1019 |
3.80e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 3.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 741 QERLEQLEGKLLIYE-SSGETQARHLAQRLQR-ELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRN- 817
Cdd:TIGR02169 217 LKEKREYEGYELLKEkEALERQKEAIERQLASlEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKi 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 818 -EVELEILRQRNVELEFGKEALGAKYQDCRAEVLI--LREDLAAAETQLEHLQAERKQARKELQDLRrslplllIFRLLS 894
Cdd:TIGR02169 297 gELEAEIASLERSIAEKERELEDAEERLAKLEAEIdkLLAEIEELEREIEEERKRRDKLTEEYAELK-------EELEDL 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 895 LAKMGNEESSPGGSPRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREIvylKEEVKSLRSQLKELNARHYEA 974
Cdd:TIGR02169 370 RAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADL---NAAIAGIEAKINELEEEKEDK 446
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 939620210 975 METADSHWVDLEQQYKEREEAQQAKEAsLKQKIAQLQDCLREDSR 1019
Cdd:TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYD-LKEEYDRVEKELSKLQR 490
|
|
| FtsB |
COG2919 |
Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning]; |
503-545 |
4.28e-03 |
|
Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442163 [Multi-domain] Cd Length: 96 Bit Score: 37.94 E-value: 4.28e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 939620210 503 IWQTLQDLDKLQKEAEMYQKENERLQTEVQLMKQELDAAEKAA 545
Cdd:COG2919 31 YRELRQEIAELEAENAKLKARNAELEAEVADLKDGPDYIEERA 73
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
949-1182 |
4.28e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 4.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 949 EIVYLKEEVKSLRSQLKELNARHYEA---METADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDClredsraaTEKI 1025
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELtaeLQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL--------EQQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1026 QQLEEGELSLKSCLVRMTKEhrdLLTENRTLQCSLESLmAKMEKEAEHKMPLTEALENERRKTQALMDDLifakkvqQNT 1105
Cdd:TIGR02168 305 QILRERLANLERQLEELEAQ---LEELESKLDELAEEL-AELEEKLEELKEELESLEAELEELEAELEEL-------ESR 373
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 939620210 1106 EDQLRQETDALRTQIFnikkdylhievtngELKEEVGTLENKIRQMENQMRDSEERARCLEDELRTKDEQCQLLERK 1182
Cdd:TIGR02168 374 LEELEEQLETLRSKVA--------------QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK 436
|
|
| OmpH |
smart00935 |
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ... |
512-587 |
4.31e-03 |
|
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.
Pssm-ID: 214922 [Multi-domain] Cd Length: 140 Bit Score: 38.72 E-value: 4.31e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 939620210 512 KLQKEAEMYQKENERLQTEVQLMKQELDaAEKAAISRAKKQAQIGELMQRIKELEEMQSSLEDEASelREQNELLE 587
Cdd:smart00935 22 QLEKEFKKRQAELEKLEKELQKLKEKLQ-KDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDLQ--KRQQEELQ 94
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
737-880 |
5.49e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 5.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 737 LQFYQERLEQLEGKLLIYES------------SGETQARHLAQRL----QRELQLEKDLKELADRVELLIEQNAQLEEAK 800
Cdd:COG3206 177 LEFLEEQLPELRKELEEAEAaleefrqknglvDLSEEAKLLLQQLseleSQLAEARAELAEAEARLAALRAQLGSGPDAL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 801 CEFEEAENDTRLHLQRNEVELEI--LRQRN-------VELEFGKEALGAKYQDCRAEVLI-LREDLAAAETQLEHLQAER 870
Cdd:COG3206 257 PELLQSPVIQQLRAQLAELEAELaeLSARYtpnhpdvIALRAQIAALRAQLQQEAQRILAsLEAELEALQAREASLQAQL 336
|
170
....*....|
gi 939620210 871 KQARKELQDL 880
Cdd:COG3206 337 AQLEARLAEL 346
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
804-1162 |
7.56e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.69 E-value: 7.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 804 EEAEN---DTRLHLQR-----NEVE--LEIL-RQRNV----------ELEFGKEALGAKYQDCRAEVLILREDLAAAETQ 862
Cdd:COG1196 175 EEAERkleATEENLERledilGELErqLEPLeRQAEKaeryrelkeeLKELEAELLLLKLRELEAELEELEAELEELEAE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 863 LEHLQAERKQARKELQDLRrslplllifrllslakmgneesspggsprlssgytSSIHQDRDFSAKIQTTEFDLGQAgft 942
Cdd:COG1196 255 LEELEAELAELEAELEELR-----------------------------------LELEELELELEEAQAEEYELLAE--- 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 943 DSGEEREIVYLKEEVKSLRSQLKELNArhyeametadshwvdleqqykEREEAQQaKEASLKQKIAQLQDclredsrAAT 1022
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEE---------------------ELAELEE-ELEELEEELEELEE-------ELE 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1023 EKIQQLEEGELSLKSCLVRMTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALmDDLIFAKKVQ 1102
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL-ERLEEELEEL 426
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1103 QNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERA 1162
Cdd:COG1196 427 EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
505-623 |
8.21e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.43 E-value: 8.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 505 QTLQDLDKLQKEAEMYQKENERLQtevQLMKQELDAAEKAAISRAKKQAQIGELMQRIKELEEMQSSLEDEASELREQNE 584
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLE---EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
|
90 100 110
....*....|....*....|....*....|....*....
gi 939620210 585 LLEFRILELEDDSDKMestcEGHCQSLQDLLEQSAQRLE 623
Cdd:TIGR02168 898 ELSEELRELESKRSEL----RRELEELREKLAQLELRLE 932
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
953-1175 |
8.76e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 8.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 953 LKEEVKSL---RSQLKELNARHYEAMETADSHWVDLEQQYKEREEAQQAKEASLKQkiaqlqdcLREDSRAATEKIQQLE 1029
Cdd:COG4717 51 LEKEADELfkpQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEE--------LEAELEELREELEKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1030 EgelslksclvrmTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALmddlifaKKVQQNTEDQL 1109
Cdd:COG4717 123 K------------LLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAEL-------AELQEELEELL 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 939620210 1110 RQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERARCLEDELRTKDEQ 1175
Cdd:COG4717 184 EQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEAR 249
|
|
| BLOC1_2 |
pfam10046 |
Biogenesis of lysosome-related organelles complex-1 subunit 2; Members of this family of ... |
509-590 |
9.41e-03 |
|
Biogenesis of lysosome-related organelles complex-1 subunit 2; Members of this family of proteins play a role in cellular proliferation, as well as in the biogenesis of specialized organelles of the endosomal-lysosomal system.
Pssm-ID: 462951 [Multi-domain] Cd Length: 96 Bit Score: 36.80 E-value: 9.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 509 DLDKLQKEAEMYQKENERLQTEVQLMKQELDAAEKAAISRAKKQAQIGELMQRIKELEEMQSSLEDEASELREQNELLEF 588
Cdd:pfam10046 14 ELEATVEDYKLLEKMNEATSLKYKDMKDVAASLEKELEELNQKYEELQPYLQQIDQIEEQVTKLEETVYELDEYSKRLES 93
|
..
gi 939620210 589 RI 590
Cdd:pfam10046 94 KF 95
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
960-1183 |
9.67e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.31 E-value: 9.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 960 LRSQLKEL-----NARHY-----EAMETADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDCL----------REDSR 1019
Cdd:COG1196 198 LERQLEPLerqaeKAERYrelkeELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELaeleaeleelRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1020 AATEKIQQLEEGELSLKSCLVRMTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDDLIFAK 1099
Cdd:COG1196 278 ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939620210 1100 KVQQNTEDQLR---QETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERARCLEDELRTKDEQC 1176
Cdd:COG1196 358 AELAEAEEALLeaeAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
....*..
gi 939620210 1177 QLLERKL 1183
Cdd:COG1196 438 EEEEEAL 444
|
|
| |
