GTP_EFTU_D3 domain-containing protein [Caenorhabditis elegans]
List of domain hits
Name | Accession | Description | Interval | E-value | |||
GTPBP_III | cd03708 | Domain III of the GP-1 family of GTPases; This family includes proteins similar to GTPBP1 and ... |
50-136 | 2.70e-51 | |||
Domain III of the GP-1 family of GTPases; This family includes proteins similar to GTPBP1 and GTPBP2. GTPBP1 is structurally related to elongation factor 1 alpha, a key component of the protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in the cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution. : Pssm-ID: 294007 [Multi-domain] Cd Length: 87 Bit Score: 159.99 E-value: 2.70e-51
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Translation_Factor_II_like super family | cl02787 | Domain II of Elongation factor Tu (EF-Tu)-like proteins; Elongation factor Tu consists of ... |
1-44 | 1.73e-19 | |||
Domain II of Elongation factor Tu (EF-Tu)-like proteins; Elongation factor Tu consists of three structural domains. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E. coli IF-2 to 30S subunits. The actual alignment was detected with superfamily member cd03694: Pssm-ID: 445922 [Multi-domain] Cd Length: 87 Bit Score: 78.80 E-value: 1.73e-19
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Name | Accession | Description | Interval | E-value | ||||
GTPBP_III | cd03708 | Domain III of the GP-1 family of GTPases; This family includes proteins similar to GTPBP1 and ... |
50-136 | 2.70e-51 | ||||
Domain III of the GP-1 family of GTPases; This family includes proteins similar to GTPBP1 and GTPBP2. GTPBP1 is structurally related to elongation factor 1 alpha, a key component of the protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in the cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution. Pssm-ID: 294007 [Multi-domain] Cd Length: 87 Bit Score: 159.99 E-value: 2.70e-51
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GTPBP_II | cd03694 | Domain II of the GTPBP family of GTP binding proteins; This group includes proteins similar to ... |
1-44 | 1.73e-19 | ||||
Domain II of the GTPBP family of GTP binding proteins; This group includes proteins similar to GTPBP1 and GTPBP2. GTPBP1 is structurally related to elongation factor 1 alpha, a key component of the protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution. Pssm-ID: 293895 [Multi-domain] Cd Length: 87 Bit Score: 78.80 E-value: 1.73e-19
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TEF1 | COG5256 | Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and ... |
5-140 | 6.43e-08 | ||||
Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]; Translation elongation factor EF-1alpha (GTPase) is part of the Pathway/BioSystem: Translation factors Pssm-ID: 444074 [Multi-domain] Cd Length: 423 Bit Score: 51.47 E-value: 6.43e-08
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PRK12317 | PRK12317 | elongation factor 1-alpha; Reviewed |
5-140 | 4.52e-07 | ||||
elongation factor 1-alpha; Reviewed Pssm-ID: 237055 [Multi-domain] Cd Length: 425 Bit Score: 49.15 E-value: 4.52e-07
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Name | Accession | Description | Interval | E-value | ||||
GTPBP_III | cd03708 | Domain III of the GP-1 family of GTPases; This family includes proteins similar to GTPBP1 and ... |
50-136 | 2.70e-51 | ||||
Domain III of the GP-1 family of GTPases; This family includes proteins similar to GTPBP1 and GTPBP2. GTPBP1 is structurally related to elongation factor 1 alpha, a key component of the protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in the cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution. Pssm-ID: 294007 [Multi-domain] Cd Length: 87 Bit Score: 159.99 E-value: 2.70e-51
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GTPBP_II | cd03694 | Domain II of the GTPBP family of GTP binding proteins; This group includes proteins similar to ... |
1-44 | 1.73e-19 | ||||
Domain II of the GTPBP family of GTP binding proteins; This group includes proteins similar to GTPBP1 and GTPBP2. GTPBP1 is structurally related to elongation factor 1 alpha, a key component of the protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution. Pssm-ID: 293895 [Multi-domain] Cd Length: 87 Bit Score: 78.80 E-value: 1.73e-19
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TEF1 | COG5256 | Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and ... |
5-140 | 6.43e-08 | ||||
Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]; Translation elongation factor EF-1alpha (GTPase) is part of the Pathway/BioSystem: Translation factors Pssm-ID: 444074 [Multi-domain] Cd Length: 423 Bit Score: 51.47 E-value: 6.43e-08
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PRK12317 | PRK12317 | elongation factor 1-alpha; Reviewed |
5-140 | 4.52e-07 | ||||
elongation factor 1-alpha; Reviewed Pssm-ID: 237055 [Multi-domain] Cd Length: 425 Bit Score: 49.15 E-value: 4.52e-07
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PRK12736 | PRK12736 | elongation factor Tu; Reviewed |
21-137 | 1.76e-05 | ||||
elongation factor Tu; Reviewed Pssm-ID: 237184 [Multi-domain] Cd Length: 394 Bit Score: 44.16 E-value: 1.76e-05
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tufA | CHL00071 | elongation factor Tu |
28-137 | 1.82e-05 | ||||
elongation factor Tu Pssm-ID: 177010 [Multi-domain] Cd Length: 409 Bit Score: 44.18 E-value: 1.82e-05
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PTZ00141 | PTZ00141 | elongation factor 1- alpha; Provisional |
5-150 | 3.21e-05 | ||||
elongation factor 1- alpha; Provisional Pssm-ID: 185474 [Multi-domain] Cd Length: 446 Bit Score: 43.58 E-value: 3.21e-05
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Translation_factor_III | cd01513 | Domain III of Elongation factor (EF) Tu (EF-TU) and related proteins; Elongation factor (EF) ... |
55-133 | 8.29e-04 | ||||
Domain III of Elongation factor (EF) Tu (EF-TU) and related proteins; Elongation factor (EF) EF-Tu participates in the elongation phase during protein biosynthesis on the ribosome. Its functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental findings indicate an essential contribution of domain III to activation of GTP hydrolysis. This domain III, which is distinct from the domain III in EFG and related elongation factors, is found in several eukaryotic translation factors, like peptide chain release factors RF3, elongation factor 1, selenocysteine (Sec)-specific elongation factor, and in GT-1 family of GTPase (GTPBP1). Pssm-ID: 275447 [Multi-domain] Cd Length: 102 Bit Score: 37.37 E-value: 8.29e-04
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eRF3_C_III | cd03704 | C-terminal domain of eRF3; This model represents the eEF1alpha-like C-terminal region of eRF3, ... |
54-110 | 5.91e-03 | ||||
C-terminal domain of eRF3; This model represents the eEF1alpha-like C-terminal region of eRF3, which is homologous to the domain III of EF-Tu. eRF3 is a GTPase which enhances termination efficiency by stimulating eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions: N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils. Pssm-ID: 294003 [Multi-domain] Cd Length: 108 Bit Score: 35.22 E-value: 5.91e-03
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EF1_alpha_II | cd03693 | Domain II of elongation factor 1-alpha; This family represents domain II of elongation factor ... |
5-46 | 6.32e-03 | ||||
Domain II of elongation factor 1-alpha; This family represents domain II of elongation factor 1-alpha (EF-1A) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF-1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF-1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression. Pssm-ID: 293894 [Multi-domain] Cd Length: 91 Bit Score: 34.47 E-value: 6.32e-03
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Blast search parameters | ||||
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