NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|902763196|ref|NP_001298035|]
View 

KH domain-containing protein 3 isoform 2 [Mus musculus]

Protein Classification

FILIA_N_like domain-containing protein( domain architecture ID 11240190)

FILIA_N_like domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
MOEP19 pfam16005
KH-like RNA-binding domain; MOEP19 is a family of mammalian KH-like RNA-binding motifs. The ...
 28-112 1.88e-41

KH-like RNA-binding domain; MOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplasmic domain in oocytes and provides evidence for mammalian oocyte polarity and a form of pre-patterning that persists in zygotes and early embryos through the morula stage.


:

Pssm-ID: 464969  Cd Length: 85  Bit Score: 139.70  E-value: 1.88e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196   28 KLPKWFHVECLEDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDLAH 107
Cdd:pfam16005   1 KRPWWFPPEELKDPLVFYLEAWLLELIFGPDGERIPHIEWMSQTLLQVDVVDSEGLAEITIFGRPRYQKRVKKMLLSLAS 80


                  ....*
gi 902763196  108 YCRMK 112
Cdd:pfam16005  81 WHRER 85
rne super family cl35953
ribonuclease E; Reviewed
 122-336 3.97e-12

ribonuclease E; Reviewed


The actual alignment was detected with superfamily member PRK10811:

Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 67.37  E-value: 3.97e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  122 GVERRRMAAHKAATQ-PAPVKVREAAPRPASVKV--------PETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEE 192
Cdd:PRK10811  808 GQRRRRYRDERYPTQsPMPLTVACASPEMASGKVwirypvvrPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPV 887

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  193 VREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQ-ASVQAVREAATRPAPGKVRKAATQPAPVQVCQ 271
Cdd:PRK10811  888 VEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESdVAVAQEVAEHAEPVVEPQDETADIEEAAETAE 967

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 902763196  272 EATQLAPVKVREAATQPASGKVREAATQLAPVKVRKAATQLAPVKVHEAA----TQPAPGKVSDAATQS 336
Cdd:PRK10811  968 VVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATapmtRAPAPEYVPEAPRHS 1036
 
Name Accession Description Interval E-value
MOEP19 pfam16005
KH-like RNA-binding domain; MOEP19 is a family of mammalian KH-like RNA-binding motifs. The ...
 28-112 1.88e-41

KH-like RNA-binding domain; MOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplasmic domain in oocytes and provides evidence for mammalian oocyte polarity and a form of pre-patterning that persists in zygotes and early embryos through the morula stage.


Pssm-ID: 464969  Cd Length: 85  Bit Score: 139.70  E-value: 1.88e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196   28 KLPKWFHVECLEDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDLAH 107
Cdd:pfam16005   1 KRPWWFPPEELKDPLVFYLEAWLLELIFGPDGERIPHIEWMSQTLLQVDVVDSEGLAEITIFGRPRYQKRVKKMLLSLAS 80


                  ....*
gi 902763196  108 YCRMK 112
Cdd:pfam16005  81 WHRER 85
FILIA_N_like cd12795
FILIA-N KH-like domain; This group contains the N-terminal atypical KH domain of FILIA and ...
 12-124 2.22e-38

FILIA-N KH-like domain; This group contains the N-terminal atypical KH domain of FILIA and related domains. FILIA is expressed in oocytes and embryo, and contains an atypical KH domain at the N-terminus with an N-terminal extension that interacts with RNA. RNA-binding may mediate RNA transcript regulation in oogenesis and embryogenesis. FILIA-N differs from typical KH domains by forming a stable dimer in solution and crystal structure.


Pssm-ID: 240613 [Multi-domain]  Cd Length: 114  Bit Score: 132.83  E-value: 2.22e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  12 PLDHKQGTLFEIIGEPKLPKWFHVECLEDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGP 91
Cdd:cd12795    1 QLREKVPMSMEVLGLVKRPWWFRPEDLKDPLVLYVEAWLLEKIFGPDGALIPGIEWESQTLLQVEAWDSSGLAEITVFGR 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 902763196  92 PPFRRDVDRMLTDLAHYCRMKLME-IEALEAGVE 124
Cdd:cd12795   81 PRARRRVKRMLLNLAAWHREHRARgREKLEELEE 114
rne PRK10811
ribonuclease E; Reviewed
 122-336 3.97e-12

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 67.37  E-value: 3.97e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  122 GVERRRMAAHKAATQ-PAPVKVREAAPRPASVKV--------PETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEE 192
Cdd:PRK10811  808 GQRRRRYRDERYPTQsPMPLTVACASPEMASGKVwirypvvrPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPV 887

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  193 VREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQ-ASVQAVREAATRPAPGKVRKAATQPAPVQVCQ 271
Cdd:PRK10811  888 VEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESdVAVAQEVAEHAEPVVEPQDETADIEEAAETAE 967

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 902763196  272 EATQLAPVKVREAATQPASGKVREAATQLAPVKVRKAATQLAPVKVHEAA----TQPAPGKVSDAATQS 336
Cdd:PRK10811  968 VVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATapmtRAPAPEYVPEAPRHS 1036
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
115-187 4.08e-05

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 45.38  E-value: 4.08e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 902763196 115 EIEALEAGVERRRMAAHKAATQPAPVKVREAAPRPASVKVPeTATQPAPVKVREAAPQPAPVQEVREAAPQQA 187
Cdd:COG5373   29 RVEELEAELAEAAEAASAPAEPEPEAAAAATAAAPEAAPAP-VPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
 
Name Accession Description Interval E-value
MOEP19 pfam16005
KH-like RNA-binding domain; MOEP19 is a family of mammalian KH-like RNA-binding motifs. The ...
 28-112 1.88e-41

KH-like RNA-binding domain; MOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplasmic domain in oocytes and provides evidence for mammalian oocyte polarity and a form of pre-patterning that persists in zygotes and early embryos through the morula stage.


Pssm-ID: 464969  Cd Length: 85  Bit Score: 139.70  E-value: 1.88e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196   28 KLPKWFHVECLEDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDLAH 107
Cdd:pfam16005   1 KRPWWFPPEELKDPLVFYLEAWLLELIFGPDGERIPHIEWMSQTLLQVDVVDSEGLAEITIFGRPRYQKRVKKMLLSLAS 80


                  ....*
gi 902763196  108 YCRMK 112
Cdd:pfam16005  81 WHRER 85
FILIA_N_like cd12795
FILIA-N KH-like domain; This group contains the N-terminal atypical KH domain of FILIA and ...
 12-124 2.22e-38

FILIA-N KH-like domain; This group contains the N-terminal atypical KH domain of FILIA and related domains. FILIA is expressed in oocytes and embryo, and contains an atypical KH domain at the N-terminus with an N-terminal extension that interacts with RNA. RNA-binding may mediate RNA transcript regulation in oogenesis and embryogenesis. FILIA-N differs from typical KH domains by forming a stable dimer in solution and crystal structure.


Pssm-ID: 240613 [Multi-domain]  Cd Length: 114  Bit Score: 132.83  E-value: 2.22e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  12 PLDHKQGTLFEIIGEPKLPKWFHVECLEDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGP 91
Cdd:cd12795    1 QLREKVPMSMEVLGLVKRPWWFRPEDLKDPLVLYVEAWLLEKIFGPDGALIPGIEWESQTLLQVEAWDSSGLAEITVFGR 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 902763196  92 PPFRRDVDRMLTDLAHYCRMKLME-IEALEAGVE 124
Cdd:cd12795   81 PRARRRVKRMLLNLAAWHREHRARgREKLEELEE 114
KH-I_KHDC1_like cd22440
type I K homology (KH) RNA-binding domain found in KHDC1-like family; The KHDC1-like family ...
 38-105 7.52e-31

type I K homology (KH) RNA-binding domain found in KHDC1-like family; The KHDC1-like family corresponds to a group of structurally related proteins characterized by an atypical RNA-binding KH domain. They are unique to eutherian mammals and specifically expressed in oocytes and/or embryonic stem cells. Family members include KH homology domain-containing protein 1 (KHDC1), KHDC1-like protein (KHDC1L), KHDC3-like protein (KHDC3L, also called ES cell-associated transcript 1 protein or ECAT1), developmental pluripotency-associated 5 protein (DPPA5, also called embryonal stem cell-specific gene 1 protein or ESG-1), Oocyte-expressed protein (OOEP, also called KH homology domain-containing protein 2 or KHDC2, or Oocyte- and embryo-specific protein 19 or OEP19). KHDC3L is essential for human oocyte maturation and pre-implantation development of the resulting embryos. DPPA5 is involved in the maintenance of embryonic stem (ES) cell pluripotency. OOEP plays an essential role for zygotes to progress beyond the first embryonic cell divisions.


Pssm-ID: 411868  Cd Length: 68  Bit Score: 111.62  E-value: 7.52e-31
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 902763196  38 LEDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDL 105
Cdd:cd22440    1 LQDPSVFHVEARLLEKIFGPDGTLIPHLEQESHTLIHVDRWDPEGKAEITIFGPPRYRQRAKWMLQCL 68
rne PRK10811
ribonuclease E; Reviewed
 122-336 3.97e-12

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 67.37  E-value: 3.97e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  122 GVERRRMAAHKAATQ-PAPVKVREAAPRPASVKV--------PETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEE 192
Cdd:PRK10811  808 GQRRRRYRDERYPTQsPMPLTVACASPEMASGKVwirypvvrPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPV 887

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  193 VREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQ-ASVQAVREAATRPAPGKVRKAATQPAPVQVCQ 271
Cdd:PRK10811  888 VEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESdVAVAQEVAEHAEPVVEPQDETADIEEAAETAE 967

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 902763196  272 EATQLAPVKVREAATQPASGKVREAATQLAPVKVRKAATQLAPVKVHEAA----TQPAPGKVSDAATQS 336
Cdd:PRK10811  968 VVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATapmtRAPAPEYVPEAPRHS 1036
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 126-302 6.85e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 54.10  E-value: 6.85e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 126 RRMAAHKAATQPAPVKVREAAPRPASVKVPETATQPAPvkvreAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVQE 205
Cdd:PRK07994 355 RMLAFHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVA-----PPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQL 429

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 206 VREAATEQAPVQEvSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGkVRKAATQPAPVQVCQEATqlaPVKVREAA 285
Cdd:PRK07994 430 QRAQGATKAKKSE-PAAASRARPVNSALERLASVRPAPSALEKAPAKKEA-YRWKATNPVEVKKEPVAT---PKALKKAL 504

                        170
                 ....*....|....*..
gi 902763196 286 TQPasgKVREAATQLAP 302
Cdd:PRK07994 505 EHE---KTPELAAKLAA 518
rne PRK10811
ribonuclease E; Reviewed
 115-260 2.88e-07

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 52.35  E-value: 2.88e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  115 EIEALEAGVERRRMAAHKAATQPAPVKVREAAPRPASVKVPETaTQPAPVkvreAAPQPAPVQEVREAApqqASVQEEVR 194
Cdd:PRK10811  872 EVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVET-THPEVI----AAPVTEQPQVITESD---VAVAQEVA 943

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 902763196  195 EAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKA 260
Cdd:PRK10811  944 EHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEA 1009
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 113-263 1.24e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 50.37  E-value: 1.24e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 113 LMEIEALEAGVERRRMAAHKAATQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEE 192
Cdd:PRK07764 375 LARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAP 454

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 902763196 193 VREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQ 263
Cdd:PRK07764 455 SPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPEILAAVPK 525
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
129-329 1.35e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 50.23  E-value: 1.35e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 129 AAHKAATQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVQEvrE 208
Cdd:PRK07003 375 RVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPA--K 452

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 209 AATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATR-----PAPGKVRKAATQPAPVQVCQEATQLAPVKVRE 283
Cdd:PRK07003 453 ANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRaaapsAATPAAVPDARAPAAASREDAPAAAAPPAPEA 532

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 284 AATQPASGK--------------VREAATQLAPVKVRKAATQLAPVKVHEAATQPAPGKV 329
Cdd:PRK07003 533 RPPTPAAAApaaraggaaaaldvLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRV 592
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
144-338 1.98e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 49.49  E-value: 1.98e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 144 EAAPRPASVkVPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVQEVREAATEQAPVQEVSEAA 223
Cdd:PRK12323 371 GAGPATAAA-APVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPA 449

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 224 TEQAPVQeVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPV--------QVCQEATQLAPVKVREAATQPASGKVRE 295
Cdd:PRK12323 450 PAPAPAA-APAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPAdddpppweELPPEFASPAPAQPDAAPAGWVAESIPD 528

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 902763196 296 AATQLAPVKVRKAATQLAPVKVHEAATQPAPGKVSDAATQSAS 338
Cdd:PRK12323 529 PATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASAS 571
valS PRK14900
valyl-tRNA synthetase; Provisional
 204-338 5.34e-06

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 48.45  E-value: 5.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  204 QEVREAATEQAPVQEvsEAATEQAPVQEVNEAATEQASVQAVREAATRPAPgkvrkaATQPAPVQVCQEATQLAPVKVRE 283
Cdd:PRK14900  913 RDTMEIQNEQKPTQD--GPAAEAQPAQENTVVESAEKAVAAVSEAAQQAAT------AVASGIEKVAEAVRKTVRRSVKK 984

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 902763196  284 AATQPASGK---VREAATQLAPVK---VRKAATQLAPVK---VHEAATQPAPGKVSDAATQSAS 338
Cdd:PRK14900  985 AAATRAAMKkkvAKKAPAKKAAAKkaaAKKAAAKKKVAKkapAKKVARKPAAKKAAKKPARKAA 1048
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 116-264 5.92e-06

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 47.98  E-value: 5.92e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 116 IEALEAGVERRRMAAHKAATQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVRE 195
Cdd:PRK12678  52 IAAIKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERR 131

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 902763196 196 AATEQAPVQEVREAATEQApvQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQP 264
Cdd:PRK12678 132 ERGEAARRGAARKAGEGGE--QPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGR 198
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 127-287 7.40e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.79  E-value: 7.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 127 RMAAHK-AATQPAPVKVREAAPRPASVKVPetATQPAPVKVREAAPQPAPVQEVREAAPQQASVqEEVREAATEQAPVQE 205
Cdd:PRK14951 360 RLLAFKpAAAAEAAAPAEKKTPARPEAAAP--AAAPVAQAAAAPAPAAAPAAAASAPAAPPAAA-PPAPVAAPAAAAPAA 436

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 206 VREAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVK--VRE 283
Cdd:PRK14951 437 APAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDVWHATVQQLAAAEAITalARE 516


                 ....
gi 902763196 284 AATQ 287
Cdd:PRK14951 517 LALQ 520
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 127-282 9.53e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 47.29  E-value: 9.53e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 127 RMAAHKAATQPAPVKVR-EAAPRPASVKVPETATQPAPVKVREAAPQPAPVQevreAAPQQASVQEEVREAATEQAPVQe 205
Cdd:PRK07764 361 RMLLPSASDDERGLLARlERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAP----AAAAPAAAAAPAPAAAPQPAPAP- 435

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 902763196 206 vrEAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVR 282
Cdd:PRK07764 436 --APAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAA 510
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
128-301 1.03e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.18  E-value: 1.03e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 128 MAAHKAATQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVQEVr 207
Cdd:PRK12323 433 LAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAP- 511

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 208 eAATEQAPVQEVSEAATEQAPVQEVNEAATeqasvqAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVREAATQ 287
Cdd:PRK12323 512 -AQPDAAPAGWVAESIPDPATADPDDAFET------LAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPAL 584

                        170
                 ....*....|....
gi 902763196 288 PASGKVREAATQLA 301
Cdd:PRK12323 585 AARLPVRGLAQQLA 598
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
118-291 1.28e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.79  E-value: 1.28e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 118 ALEAGVERRRMAAHKAATQPAPVKVreAAPRPASVKVPETATQPAPvkvreaAPQPAPVQEVREAAPQQASVQEEVREAA 197
Cdd:PRK12323 409 APAAAAAARAVAAAPARRSPAPEAL--AAARQASARGPGGAPAPAP------APAAAPAAAARPAAAGPRPVAAAAAAAP 480

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 198 TEQAPVQEVREAATEQAPVQEVSEAATEQAPVQevNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLA 277
Cdd:PRK12323 481 ARAAPAAAPAPADDDPPPWEELPPEFASPAPAQ--PDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATE 558

                        170
                 ....*....|....
gi 902763196 278 PVKVREAATQPASG 291
Cdd:PRK12323 559 PVVAPRPPRASASG 572
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 144-299 2.22e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 46.25  E-value: 2.22e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 144 EAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQAsvqeevreAATEQAPVQEVREAATEQAPVQEVSEAA 223
Cdd:PRK14951 370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASA--------PAAPPAAAPPAPVAAPAAAAPAAAPAAA 441

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 224 TEQAPVQEVNEAATEQASVQAVREAATRPAPgKVRKAATQPAPVQVCQEATQLAPV---KVRE-AATQPASGKVREAATQ 299
Cdd:PRK14951 442 PAAVALAPAPPAQAAPETVAIPVRVAPEPAV-ASAAPAPAAAPAAARLTPTEEGDVwhaTVQQlAAAEAITALARELALQ 520
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 124-333 2.95e-05

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 45.71  E-value: 2.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 124 ERRRMAAHK-AATQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAP 202
Cdd:PRK05035 466 KAAREARHKkAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADP 545

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 203 VQEVREAATEQAPVQevsEAATEQAPVQEVNEAATEQASVQAVREAAtrpapgKVRKAATQPAPVQVCQEATQLAPVKVR 282
Cdd:PRK05035 546 KKAAVAAAIARAKAK---KAAQQAANAEAEEEVDPKKAAVAAAIARA------KAKKAAQQAASAEPEEQVAEVDPKKAA 616

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 902763196 283 EAATQpASGKVREAATQLAPV-------KVRKAATQLAPVKVHEAATQPAPGKVSDAA 333
Cdd:PRK05035 617 VAAAI-ARAKAKKAEQQANAEpeepvdpRKAAVAAAIARAKARKAAQQQANAEPEEAE 673
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
115-187 4.08e-05

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 45.38  E-value: 4.08e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 902763196 115 EIEALEAGVERRRMAAHKAATQPAPVKVREAAPRPASVKVPeTATQPAPVKVREAAPQPAPVQEVREAAPQQA 187
Cdd:COG5373   29 RVEELEAELAEAAEAASAPAEPEPEAAAAATAAAPEAAPAP-VPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 114-252 4.55e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 45.19  E-value: 4.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 114 MEIEALEAGVERRRMAAHKAATQPAPVKVReaaPRPASVKVPETA-TQPAPVKVREAAPQPAPVQEVREAAPQQASVQEE 192
Cdd:PRK14950 351 LELAVIEALLVPVPAPQPAKPTAAAPSPVR---PTPAPSTRPKAAaAANIPPKEPVRETATPPPVPPRPVAPPVPHTPES 427

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 902763196 193 VREAATEQAPVQEVREaATEQAPVQEVSEAATEQAPVQEVNEAATEQ---------ASVQAVREAATRP 252
Cdd:PRK14950 428 APKLTRAAIPVDEKPK-YTPPAPPKEEEKALIADGDVLEQLEAIWKQilrdvpprsPAVQALLSSGVRP 495
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
166-342 4.81e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 45.23  E-value: 4.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 166 VREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQ---EVNEAATEQASV 242
Cdd:PRK07003 353 LRMLAFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAaaaTRAEAPPAAPAP 432

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 243 QAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVREAATQPASGKVREAATQLAPVKVRKAATQLAPVKVHEAAT 322
Cdd:PRK07003 433 PATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARA 512

                        170       180
                 ....*....|....*....|
gi 902763196 323 QPAPGKVSDAATQSASVQES 342
Cdd:PRK07003 513 PAAASREDAPAAAAPPAPEA 532
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
126-302 5.98e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 44.84  E-value: 5.98e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 126 RRMAAHKAATQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVQE 205
Cdd:PRK07003 354 RMLAFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPP 433

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 206 VREAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVcqEATQLAPVKVREAA 285
Cdd:PRK07003 434 ATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAA--APSAATPAAVPDAR 511

                        170
                 ....*....|....*..
gi 902763196 286 TQPASGKVREAATQLAP 302
Cdd:PRK07003 512 APAAASREDAPAAAAPP 528
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
129-315 1.34e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 43.68  E-value: 1.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 129 AAHKAATQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAP-QPAPVQEVREAAPQQASVQEEVREAATEQAPVQEVr 207
Cdd:PRK07003 438 RGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPaSDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAA- 516

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 208 EAATEQAPVQEVSEAATEQAPV--QEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVREAA 285
Cdd:PRK07003 517 SREDAPAAAAPPAPEARPPTPAaaAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQV 596

                        170       180       190
                 ....*....|....*....|....*....|
gi 902763196 286 TQPASGKVREAATQLAPVKVRKAATQLAPV 315
Cdd:PRK07003 597 PTPRARAATGDAPPNGAARAEQAAESRGAP 626
rne PRK10811
ribonuclease E; Reviewed
 133-341 1.98e-04

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 43.49  E-value: 1.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  133 AATQPAPVKVREAAPRPASVKVPETATQPAPVKVrEAAPQPAPVQEVREAA----------------------------- 183
Cdd:PRK10811  736 AEEAVAPVVEETVAAEPVVQEVPAPRTELVKVPL-PVVAQTAPEQDEENNAenrdnngmprrsrrsprhlrvsgqrrrry 814

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  184 -----PQQASVQEEVREAATEQA--------PVQEVREAAT-EQAPVQEVSEA-ATEQAPVQEVNEAATEQASVQAVREA 248
Cdd:PRK10811  815 rderyPTQSPMPLTVACASPEMAsgkvwiryPVVRPQDVQVeEQREAEEVQVQpVVAEVPVAAAVEPVVSAPVVEAVAEV 894

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  249 ATRPAPgKVRKAATQPAPVQVCQEATQLAPV----KVREAATQPASGKVREAATQLAPVKVRKAATQLAPVKVHEAATQP 324
Cdd:PRK10811  895 VEEPVV-VAEPQPEEVVVVETTHPEVIAAPVteqpQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEP 973

                         250
                  ....*....|....*..
gi 902763196  325 APGKVSDAATQSASVQE 341
Cdd:PRK10811  974 EVVAQPAAPVVAEVAAE 990
PHA03379 PHA03379
EBNA-3A; Provisional
 91-302 3.21e-04

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 42.74  E-value: 3.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  91 PPPFRRDVDRMLtdLAHYCRMKLMEIEALEAGVERrrmaahKAATQPAPVKVreaaPRPASVKVPETATQPAPVKVreaa 170
Cdd:PHA03379 379 PPIFLRRLHRLL--LMRAGKLTERAREALEKASEP------TYGTPRPPVEK----PRPEVPQSLETATSHGSAQV---- 442

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 171 PQPAPVQEVREAAPQQASVQEEVREAATEQAPVQEVREAATEQAPVQEVSEAATE----QAPVQEVNEAATEQASVQAvr 246
Cdd:PHA03379 443 PEPPPVHDLEPGPLHDQHSMAPCPVAQLPPGPLQDLEPGDQLPGVVQDGRPACAPvpapAGPIVRPWEASLSQVPGVA-- 520

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 902763196 247 eaatrPAPGKVRKAATQPAPVQVCQEATQLAPVKVREAATQPA--SGKVREAATQLAP 302
Cdd:PHA03379 521 -----FAPVMPQPMPVEPVPVPTVALERPVCPAPPLIAMQGPGetSGIVRVRERWRPA 573
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 129-339 6.23e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 41.61  E-value: 6.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  129 AAHKAATQ--PAPVK-VREAAPRPAS---VKVPETATQPAPvKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAP 202
Cdd:PRK10263  324 AAATTATQswAAPVEpVTQTPPVASVdvpPAQPTVAWQPVP-GPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQ 402

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  203 VQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPA---PVQVCQEATQLAPV 279
Cdd:PRK10263  403 PQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEqtyQQPAAQEPLYQQPQ 482

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  280 KVREAATQPASGKVREAATQLAP------VKVRKA--ATQLAP--VKVHEAATQPAPGKVSDAATQSASV 339
Cdd:PRK10263  483 PVEQQPVVEPEPVVEETKPARPPlyyfeeVEEKRAreREQLAAwyQPIPEPVKEPEPIKSSLKAPSVAAV 552
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
162-338 6.56e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.76  E-value: 6.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 162 APVKVREAAPQPAPvqevreAAPQQASVQEEVREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQAS 241
Cdd:PRK07003 372 VPARVAGAVPAPGA------RAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADG 445

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 242 VQAVREAATRPAPGKVRKAATQPAPVQvcQEATQLAPVKVREAATQPASGKVREAATQLAPVKVRKAATQLAPVKVHEAA 321
Cdd:PRK07003 446 DAPVPAKANARASADSRCDERDAQPPA--DSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPA 523

                        170
                 ....*....|....*..
gi 902763196 322 TQPAPGKVSDAATQSAS 338
Cdd:PRK07003 524 AAAPPAPEARPPTPAAA 540
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 136-303 7.16e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 41.61  E-value: 7.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  136 QPAPVKVREAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVREA---APQQASVQEEVREAATEQAPVQEVREAATE 212
Cdd:PRK10263  399 QPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNawqAEEQQSTFAPQSTYQTEQTYQQPAAQEPLY 478

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  213 QAPVQEVSEAATEQAPV--------------QEVNEAATEQ-----ASVQAVREAATRPAPGKVRKAATQPAPVQVCQEA 273
Cdd:PRK10263  479 QQPQPVEQQPVVEPEPVveetkparpplyyfEEVEEKRAREreqlaAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAA 558

                         170       180       190
                  ....*....|....*....|....*....|
gi 902763196  274 TQLAPVkvrEAATQPASGKVREAATQLAPV 303
Cdd:PRK10263  559 AAVSPL---ASGVKKATLATGAAATVAAPV 585
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 111-346 9.35e-04

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 41.39  E-value: 9.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  111 MKLMEIEALEAGVERRRMAAHKAATQ---PAPVKVREAAPRPASVK-------------------VPETATQPAPVKVRE 168
Cdd:PLN03237 1163 KELDKLDKEDAKAEEAREKLQRAAARgesGAAKKVSRQAPKKPAPKkttkkasesetteetygssAMETENVAEVVKPKG 1242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  169 AAPQ----PAPVQEVREAApQQASVQEEVREAATEQAPVQEVR-EAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVq 243
Cdd:PLN03237 1243 RAGAkkkaPAAAKEKEEED-EILDLKDRLAAYNLDSAPAQSAKmEETVKAVPARRAAARKKPLASVSVISDSDDDDDDF- 1320

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  244 AVREAatrPAPGKVRKAATQPApvqvcqeatqlapVKVREAATQPASGKVREAATQLAPVKVRKAATQLAPVKVHEAATQ 323
Cdd:PLN03237 1321 AVEVS---LAERLKKKGGRKPA-------------AANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIGISPEKK 1384

                         250       260
                  ....*....|....*....|...
gi 902763196  324 PAPGKVSDAATQSASVQESGRTE 346
Cdd:PLN03237 1385 VRKMRASPFNKKSGSVLGRAATN 1407
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 154-346 9.77e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.12  E-value: 9.77e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 154 VPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVN 233
Cdd:PRK07764 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGG 666

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 234 EAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVREAATQPASGKVREAATQLAP-VKVRKAATQL 312
Cdd:PRK07764 667 DGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAAdDPVPLPPEPD 746

                        170       180       190
                 ....*....|....*....|....*....|....
gi 902763196 313 APVKVHEAATQPAPGKVSDAATQSASVQESGRTE 346
Cdd:PRK07764 747 DPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPS 780
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 124-215 1.45e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 40.45  E-value: 1.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  124 ERRRMAAHkaaTQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPV 203
Cdd:PRK10263  519 EREQLAAW---YQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPR 595

                          90
                  ....*....|..
gi 902763196  204 QEVREAATEQAP 215
Cdd:PRK10263  596 PQVKEGIGPQLP 607
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 160-322 1.56e-03

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 40.17  E-value: 1.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 160 QPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQ 239
Cdd:PRK09510  70 QQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKA 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 240 ASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVREAATQPASGKVREAATQLAPVKVRKAATQLAPVKVHE 319
Cdd:PRK09510 150 EAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAK 229


                 ...
gi 902763196 320 AAT 322
Cdd:PRK09510 230 AAA 232
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
100-256 1.72e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 40.14  E-value: 1.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 100 RMLTDLahyCRMKLMEI--EALEAGVERRRMAAHKAA-TQPA----PVKVREAAPRPASVKVPETATQPAPVKVREAAPQ 172
Cdd:PRK14971 349 RLLVEL---TLIQLAQLtqKGDDASGGRGPKQHIKPVfTQPAaapqPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPP 425

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 173 PAPVQEVR--EAAPQQASVQEEVREAATEQAPVQEVREAATE---QAPVQEVSEAAT---EQAPVQEVNEAATEQASVQA 244
Cdd:PRK14971 426 TVSVDPPAavPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGpstLRPIQEKAEQATgniKEAPTGTQKEIFTEEDLQYY 505

                        170
                 ....*....|...
gi 902763196 245 VRE-AATRPAPGK 256
Cdd:PRK14971 506 WQEfAGTRPQEEK 518
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 137-267 2.07e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 39.79  E-value: 2.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 137 PAPVKVREAAPRPASVKVPETATQPAPVKVReaaPQPAPVQEVREAAPQQASVQEEVREAATEqaPVQEVREAATEQAPV 216
Cdd:PRK14950 350 PLELAVIEALLVPVPAPQPAKPTAAAPSPVR---PTPAPSTRPKAAAAANIPPKEPVRETATP--PPVPPRPVAPPVPHT 424

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 902763196 217 QEVSEAATeqapvqevneaaTEQASVQAVREAATRPAPGKVRKAATQPAPV 267
Cdd:PRK14950 425 PESAPKLT------------RAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
175-303 2.30e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.86  E-value: 2.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 175 PVQEVREAAPQQASVQEEVREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAP 254
Cdd:PRK12323 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGP 444

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 902763196 255 GKVRKAATQPAPVQVCQEATQLAPVKVReAATQPASGKVREAATQLAPV 303
Cdd:PRK12323 445 GGAPAPAPAPAAAPAAAARPAAAGPRPV-AAAAAAAPARAAPAAAPAPA 492
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 129-338 2.38e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 2.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 129 AAHKAATQPAPVKVR--EAAPRPASVKVPETATQPAPvkvREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVQEV 206
Cdd:PRK07764 593 GAAGGEGPPAPASSGppEEAARPAAPAAPAAPAAPAP---AGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 207 REAATEQAPvqevseAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAP-VKVREAA 285
Cdd:PRK07764 670 PAKAGGAAP------AAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAAdDPVPLPP 743

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 902763196 286 TQPASGKVREAATQLAPVKVRKAATQLAPVKvhEAATQPAPGKVSDAATQSAS 338
Cdd:PRK07764 744 EPDDPPDPAGAPAQPPPPPAPAPAAAPAAAP--PPSPPSEEEEMAEDDAPSMD 794
PRK10905 PRK10905
cell division protein DamX; Validated
 145-328 2.75e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 39.15  E-value: 2.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 145 AAPRPASVKVPETATQ-PAPVKVREAAPQPAPVQEVREAAPQQ-ASVQEEVREAATEQAPVQEVREAATEqapvqevSEA 222
Cdd:PRK10905  51 VQPAPGTTSAEQTAGNtQQDVSLPPISSTPTQGQTPVATDGQQrVEVQGDLNNALTQPQNQQQLNNVAVN-------STL 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 223 ATEQAPVQEV-NEAATEQASVQAV--REAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVREAATQPASGKVREAATQ 299
Cdd:PRK10905 124 PTEPATVAPVrNGNASRQTAKTQTaeRPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATST 203

                        170       180
                 ....*....|....*....|....*....
gi 902763196 300 LAPVKVRKAATQLAPVKVHEAATQPAPGK 328
Cdd:PRK10905 204 PAPKETATTAPVQTASPAQTTATPAAGGK 232
PHA03247 PHA03247
large tegument protein UL36; Provisional
 118-327 2.82e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 2.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  118 ALEAGVERR-RMAAHKAATQPAPVKVREAAPRPASVKVPETATQPApvkvREAAPQPAPVQEVREAAPQQASVQEEVREA 196
Cdd:PHA03247 2749 ATPGGPARPaRPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES----RESLPSPWDPADPPAAVLAPAAALPPAASP 2824

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  197 ATEQAPVQEVREAA--TEQAPVQEVSEAATEQAPVQEVNEAATEQASVqAVREAATRPAPGKVRKAATQPAPVQVCQEAT 274
Cdd:PHA03247 2825 AGPLPPPTSAQPTAppPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPA-AKPAAPARPPVRRLARPAVSRSTESFALPPD 2903

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 902763196  275 QLAPVKVREAATQPASGKVREAATQLAPVKVRKAATQ--LAPVKVHEAATQPAPG 327
Cdd:PHA03247 2904 QPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQppLAPTTDPAGAGEPSGA 2958
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 117-225 3.29e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 39.31  E-value: 3.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 117 EALEAGVERRRMAAHKAATQPAPVKVREAAPRPASVKVPETATQP---APVKVREAAPQPAPVQEVREAAPQQASVQEEV 193
Cdd:PRK14951 385 EAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPaaaAPAAAPAAAPAAVALAPAPPAQAAPETVAIPV 464

                         90       100       110
                 ....*....|....*....|....*....|..
gi 902763196 194 ReaaTEQAPVQEVREAATEQAPVQEVSEAATE 225
Cdd:PRK14951 465 R---VAPEPAVASAAPAPAAAPAAARLTPTEE 493
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 129-299 3.58e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.20  E-value: 3.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 129 AAHKAATQPAPVKVREAAPRPASVKVPETATQPAPVKVREAAP---QPAPVQEVREAAPQQASVQEEVREAATEQAPVQE 205
Cdd:PRK07764 636 PAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPaapPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQAD 715

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 206 VREAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEatqlaPVKVREAA 285
Cdd:PRK07764 716 DPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE-----EEMAEDDA 790

                        170
                 ....*....|....
gi 902763196 286 TQPASGKVREAATQ 299
Cdd:PRK07764 791 PSMDDEDRRDAEEV 804
PHA03247 PHA03247
large tegument protein UL36; Provisional
 132-339 3.72e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.54  E-value: 3.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  132 KAATQPAPVKVREAAPRPASvkvPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVQEVREAAT 211
Cdd:PHA03247 2609 RGPAPPSPLPPDTHAPDPPP---PSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRR 2685

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  212 EQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVrEAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVREAATQPASG 291
Cdd:PHA03247 2686 RAARPTVGSLTSLADPPPPPPTPEPAPHALVSAT-PLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTA 2764

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 902763196  292 KVREAATQLAPVKVRKAATQLAPVKVHEAATQPAPGKvSDAATQSASV 339
Cdd:PHA03247 2765 GPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSP-WDPADPPAAV 2811
flhF PRK06995
flagellar biosynthesis protein FlhF;
115-232 3.84e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 38.79  E-value: 3.84e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 115 EIEALEAGVERRRMAAHKAATQPAPVKVREAAPRPAS----VKVPETATQPAPVKVREAAPQPAPVQEVREAAPQQASVQ 190
Cdd:PRK06995  47 DLAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPapwlVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAE 126

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 902763196 191 EEVREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQEV 232
Cdd:PRK06995 127 NAARRLARAAAAAPRPRVPADAAAAVADAVKARIERIVNDTV 168
PRK10905 PRK10905
cell division protein DamX; Validated
 170-336 4.06e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 38.77  E-value: 4.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 170 APQPAPVQEvrEAAPQQASVQEEVREAATEQAPVQEVREAATEQAPVQEV----SEAATEQAPVQEVNEAA------TEQ 239
Cdd:PRK10905  50 GVQPAPGTT--SAEQTAGNTQQDVSLPPISSTPTQGQTPVATDGQQRVEVqgdlNNALTQPQNQQQLNNVAvnstlpTEP 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 240 ASVQAVREAATRPAPG----KVRKAATQPAPVQVCQEATQLAPVKVREAATQPASGKVREAATQLAPVKVRKAATQLAP- 314
Cdd:PRK10905 128 ATVAPVRNGNASRQTAktqtAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPk 207

                        170       180
                 ....*....|....*....|...
gi 902763196 315 -VKVHEAATQPAPGKVSDAATQS 336
Cdd:PRK10905 208 eTATTAPVQTASPAQTTATPAAG 230
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 202-337 4.59e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 38.69  E-value: 4.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196 202 PVQEVREAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKV 281
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 902763196 282 REAATQPASGKVREAATQLAPVKVRKAATQLAPVK---VHEAATQPAPGKVSDAATQSA 337
Cdd:PRK07994 441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKkeaYRWKATNPVEVKKEPVATPKA 499
PHA03247 PHA03247
large tegument protein UL36; Provisional
 134-326 4.74e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.15  E-value: 4.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  134 ATQPAPVKVREAAPRPAsvkVPETATQPAPVKVREAAPqPAPVQEVREAAPQQASVQEEVREAATEQAPVQEVREAA--- 210
Cdd:PHA03247 2699 ADPPPPPPTPEPAPHAL---VSATPLPPGPAAARQASP-ALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPpaa 2774

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  211 -TEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVREAATQPA 289
Cdd:PHA03247 2775 pAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGG 2854

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 902763196  290 S----GKVREAATQLAPVKVRKAATQLAPVKVHEAATQPAP 326
Cdd:PHA03247 2855 SvapgGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRST 2895
PRK13850 PRK13850
type IV secretion system protein VirD4; Provisional
 88-230 8.02e-03

type IV secretion system protein VirD4; Provisional


Pssm-ID: 237531 [Multi-domain]  Cd Length: 670  Bit Score: 37.93  E-value: 8.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  88 IFGPPPFRRDVDRMLTDLAhYCRM------------KLMEIEALEAGvERRRMAAHKAATQPAPVKVREAAP--RPASVK 153
Cdd:PRK13850 517 IKGQPPLKLRKVRYYSDRE-LKRIfeaqtgslpepaSLMLPDDTNAR-RKHLPQPAASSTDQAPAKIALIPDpdEPASPQ 594

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 902763196 154 VPETATQPAPVKVR-EAAPQPAPVQEVREaapqqasvQEEVREAATEQAPVQEVREAATEQAPVQEVSEAATEQAPVQ 230
Cdd:PRK13850 595 NRTVADVPKPLSKGmDAPARAKEVDDARE--------YDGADDVTPEALVVPELAPALTAQRQLLDQIIALQQRSRVA 664
PHA03247 PHA03247
large tegument protein UL36; Provisional
 127-336 9.38e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 38.00  E-value: 9.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  127 RMAAHKAATQPAPVKVREAAPRPASVKVPETATQPAPvkvreAAPQPAPVQEVREAAPQQASVQEEVREAATEQAPVqev 206
Cdd:PHA03247 2802 WDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTA-----PPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAA--- 2873

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902763196  207 REAATEQAPVQEVSEAATEQAPVQEVNEAATEQASVQAVREAATRPAPGKVRKAATQPAPVQVCQEATQLAPVKVREAAT 286
Cdd:PHA03247 2874 KPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAG 2953

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 902763196  287 QPASGKVREAATQLAPVKV---RKAATQLAPVKVHEAATQPAPGKVSDAATQS 336
Cdd:PHA03247 2954 EPSGAVPQPWLGALVPGRVavpRFRVPQPAPSREAPASSTPPLTGHSLSRVSS 3006
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH