NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|808356336|ref|NP_001293696|]
View 

Ubiquitin carboxyl-terminal hydrolase [Caenorhabditis elegans]

Protein Classification

ubiquitin carboxyl-terminal hydrolase( domain architecture ID 13923419)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that deubiquitinates polyubiquitinated target proteins

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
UBP12 super family cl35019
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
353-927 6.37e-110

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5560:

Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 359.58  E-value: 6.37e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 353 GACGLSNLGNTCFMASAFQCLSNMPPLREYFLANTYQNDINEDNPLGTHGHLAMAVGELMKGMWSGDYASINPRKFKSII 432
Cdd:COG5560  264 GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTI 343
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 433 GQFAPRFNGYSQQDAHELMAYVLDGLHEDLNRIKKKPYIEDSDEDAKLPEA--EYAAKSWEVYKMRNDSIIVDTLHGQLK 510
Cdd:COG5560  344 GSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVvkKKAKECWWEHLKRNDSIITDLFQGMYK 423
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 511 STLICPVCEKISIKFDPFGYLSLPLPPKEQIVKQTVIV-MFLTRKWAKFSL-------GITDTTTvEEAERLMLDKLQPE 582
Cdd:COG5560  424 STLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFpESGRRQPLKIELdasstirGLKKLVD-AEYGKLGCFEIKVM 502
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 583 QQHHFVFFHVPSQYHDDITMMRPgdrvrmPGREVYVAE-VEHDLQVKgtrlfvaynriklvrsaslpmIYSLPT--GYPL 659
Cdd:COG5560  503 CIYYGGNYNMLEPADKVLLQDIP------QTDFVYLYEtNDNGIEVP---------------------VVHLRIekGYKS 555
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 660 TRGFLNDHV-FSTTKHFFINPKAVAELGGGNSNDDDSMSGSNSADEREPYKLFVGPPGSTASLPIPPTDDPIPFPDENSH 738
Cdd:COG5560  556 KRLFGDPFLqLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQ 635
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 739 DIYSNFLQIVFQWKDLKIFNQYKGNELIEREMTVSTRRKVLLQETLDWFTTKEQLGEQDSWYCPQCKKHERATKQLALWK 818
Cdd:COG5560  636 MNFNDAVVISCEWEEKRYLSLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWR 715
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 819 LPEILILHLKRFQYTKWSREKLTWEVVIPVRGLDLTDKVANPNHEKAIYDLIAVSRHYGSLSGGHYTAIGYNDREQKWFD 898
Cdd:COG5560  716 LPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYL 795
                        570       580
                 ....*....|....*....|....*....
gi 808356336 899 FNDSSANPTYPpaEPYESSDPYILVYRRR 927
Cdd:COG5560  796 FDDSRITEVDP--EDSVTSSAYVLFYRRK 822
DUSP smart00695
Domain in ubiquitin-specific proteases;
51-135 1.39e-23

Domain in ubiquitin-specific proteases;


:

Pssm-ID: 197831  Cd Length: 88  Bit Score: 95.50  E-value: 1.39e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336    51 WYLISQKWWNSLIKAVRDGFVDDVGPIDNSQISeCRNGSFFLKQRLAEQVDYTPVPEILFKRLERFYHIDDdrrDYIQRR 130
Cdd:smart00695   8 WYLISTRWYRQWADFVEGKDGKDPGPIDNSGIL-CSHGGPRLKEHLVEGEDYVLIPEELWNKLVRWYGGGP---GPIPRK 83

                   ....*
gi 808356336   131 VVRKD 135
Cdd:smart00695  84 VVCQG 88
 
Name Accession Description Interval E-value
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
353-927 6.37e-110

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 359.58  E-value: 6.37e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 353 GACGLSNLGNTCFMASAFQCLSNMPPLREYFLANTYQNDINEDNPLGTHGHLAMAVGELMKGMWSGDYASINPRKFKSII 432
Cdd:COG5560  264 GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTI 343
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 433 GQFAPRFNGYSQQDAHELMAYVLDGLHEDLNRIKKKPYIEDSDEDAKLPEA--EYAAKSWEVYKMRNDSIIVDTLHGQLK 510
Cdd:COG5560  344 GSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVvkKKAKECWWEHLKRNDSIITDLFQGMYK 423
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 511 STLICPVCEKISIKFDPFGYLSLPLPPKEQIVKQTVIV-MFLTRKWAKFSL-------GITDTTTvEEAERLMLDKLQPE 582
Cdd:COG5560  424 STLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFpESGRRQPLKIELdasstirGLKKLVD-AEYGKLGCFEIKVM 502
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 583 QQHHFVFFHVPSQYHDDITMMRPgdrvrmPGREVYVAE-VEHDLQVKgtrlfvaynriklvrsaslpmIYSLPT--GYPL 659
Cdd:COG5560  503 CIYYGGNYNMLEPADKVLLQDIP------QTDFVYLYEtNDNGIEVP---------------------VVHLRIekGYKS 555
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 660 TRGFLNDHV-FSTTKHFFINPKAVAELGGGNSNDDDSMSGSNSADEREPYKLFVGPPGSTASLPIPPTDDPIPFPDENSH 738
Cdd:COG5560  556 KRLFGDPFLqLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQ 635
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 739 DIYSNFLQIVFQWKDLKIFNQYKGNELIEREMTVSTRRKVLLQETLDWFTTKEQLGEQDSWYCPQCKKHERATKQLALWK 818
Cdd:COG5560  636 MNFNDAVVISCEWEEKRYLSLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWR 715
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 819 LPEILILHLKRFQYTKWSREKLTWEVVIPVRGLDLTDKVANPNHEKAIYDLIAVSRHYGSLSGGHYTAIGYNDREQKWFD 898
Cdd:COG5560  716 LPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYL 795
                        570       580
                 ....*....|....*....|....*....
gi 808356336 899 FNDSSANPTYPpaEPYESSDPYILVYRRR 927
Cdd:COG5560  796 FDDSRITEVDP--EDSVTSSAYVLFYRRK 822
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
355-538 2.25e-45

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 166.08  E-value: 2.25e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336  355 CGLSNLGNTCFMASAFQCLSNMPPLREYFLantYQNDINEDNPLGTHGHLAMAVGELMKGMWSGDY-ASINPRKFKSIIG 433
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLL---RISPLSEDSRYNKDINLLCALRDLFKALQKNSKsSSVSPKMFKKSLG 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336  434 QFAPRFNGYSQQDAHELMAYVLDGLHEDLNRikkkpyiedsdedaklpeaeyaaksweVYKMRNDSIIVDTLHGQLKSTL 513
Cdd:pfam00443  78 KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG---------------------------NHSTENESLITDLFRGQLKSRL 130
                         170       180
                  ....*....|....*....|....*
gi 808356336  514 ICPVCEKISIKFDPFGYLSLPLPPK 538
Cdd:pfam00443 131 KCLSCGEVSETFEPFSDLSLPIPGD 155
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
777-925 2.10e-42

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 154.75  E-value: 2.10e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 777 KVLLQETLDWFTTKEQLGEQDSWYCPQCKKHERATKQLALWKLPEILILHLKRFQYTKWSREKLTWEVVIPVRGLDLTDK 856
Cdd:cd02674   83 KVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPY 162
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 857 VANPNHEK-AIYDLIAVSRHYGSLSGGHYTAIGYNDREQKWFDFNDSSANPTypPAEPYESSDPYILVYR 925
Cdd:cd02674  163 VDTRSFTGpFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKV--SESSVVSSSAYILFYE 230
DUSP smart00695
Domain in ubiquitin-specific proteases;
51-135 1.39e-23

Domain in ubiquitin-specific proteases;


Pssm-ID: 197831  Cd Length: 88  Bit Score: 95.50  E-value: 1.39e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336    51 WYLISQKWWNSLIKAVRDGFVDDVGPIDNSQISeCRNGSFFLKQRLAEQVDYTPVPEILFKRLERFYHIDDdrrDYIQRR 130
Cdd:smart00695   8 WYLISTRWYRQWADFVEGKDGKDPGPIDNSGIL-CSHGGPRLKEHLVEGEDYVLIPEELWNKLVRWYGGGP---GPIPRK 83

                   ....*
gi 808356336   131 VVRKD 135
Cdd:smart00695  84 VVCQG 88
DUSP pfam06337
DUSP domain; The DUSP (domain present in ubiquitin-specific protease) domain is found at the ...
51-118 4.11e-11

DUSP domain; The DUSP (domain present in ubiquitin-specific protease) domain is found at the N-terminus of Ubiquitin-specific proteases. The structure of this domain has been solved. Its tripod-like structure consists of a 3-fold alpha-helical bundle supporting a triple-stranded anti-parallel beta-sheet.


Pssm-ID: 399383  Cd Length: 80  Bit Score: 59.69  E-value: 4.11e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 808356336   51 WYLISQKWWNSLIKAVRDGFvDDVGPIDNSQISECRNgSFFLKQRLAEQVDYTPVPEILFKRLERFYH 118
Cdd:pfam06337   4 VYLISSKWLNKWKSYVKEPN-NEPGPIDNSDLLDDES-NGQLKPNLQEGVDYVIVPEEVWEFLVEWYG 69
 
Name Accession Description Interval E-value
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
353-927 6.37e-110

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 359.58  E-value: 6.37e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 353 GACGLSNLGNTCFMASAFQCLSNMPPLREYFLANTYQNDINEDNPLGTHGHLAMAVGELMKGMWSGDYASINPRKFKSII 432
Cdd:COG5560  264 GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTI 343
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 433 GQFAPRFNGYSQQDAHELMAYVLDGLHEDLNRIKKKPYIEDSDEDAKLPEA--EYAAKSWEVYKMRNDSIIVDTLHGQLK 510
Cdd:COG5560  344 GSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVvkKKAKECWWEHLKRNDSIITDLFQGMYK 423
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 511 STLICPVCEKISIKFDPFGYLSLPLPPKEQIVKQTVIV-MFLTRKWAKFSL-------GITDTTTvEEAERLMLDKLQPE 582
Cdd:COG5560  424 STLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFpESGRRQPLKIELdasstirGLKKLVD-AEYGKLGCFEIKVM 502
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 583 QQHHFVFFHVPSQYHDDITMMRPgdrvrmPGREVYVAE-VEHDLQVKgtrlfvaynriklvrsaslpmIYSLPT--GYPL 659
Cdd:COG5560  503 CIYYGGNYNMLEPADKVLLQDIP------QTDFVYLYEtNDNGIEVP---------------------VVHLRIekGYKS 555
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 660 TRGFLNDHV-FSTTKHFFINPKAVAELGGGNSNDDDSMSGSNSADEREPYKLFVGPPGSTASLPIPPTDDPIPFPDENSH 738
Cdd:COG5560  556 KRLFGDPFLqLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQ 635
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 739 DIYSNFLQIVFQWKDLKIFNQYKGNELIEREMTVSTRRKVLLQETLDWFTTKEQLGEQDSWYCPQCKKHERATKQLALWK 818
Cdd:COG5560  636 MNFNDAVVISCEWEEKRYLSLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWR 715
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 819 LPEILILHLKRFQYTKWSREKLTWEVVIPVRGLDLTDKVANPNHEKAIYDLIAVSRHYGSLSGGHYTAIGYNDREQKWFD 898
Cdd:COG5560  716 LPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYL 795
                        570       580
                 ....*....|....*....|....*....
gi 808356336 899 FNDSSANPTYPpaEPYESSDPYILVYRRR 927
Cdd:COG5560  796 FDDSRITEVDP--EDSVTSSAYVLFYRRK 822
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
355-538 2.25e-45

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 166.08  E-value: 2.25e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336  355 CGLSNLGNTCFMASAFQCLSNMPPLREYFLantYQNDINEDNPLGTHGHLAMAVGELMKGMWSGDY-ASINPRKFKSIIG 433
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLL---RISPLSEDSRYNKDINLLCALRDLFKALQKNSKsSSVSPKMFKKSLG 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336  434 QFAPRFNGYSQQDAHELMAYVLDGLHEDLNRikkkpyiedsdedaklpeaeyaaksweVYKMRNDSIIVDTLHGQLKSTL 513
Cdd:pfam00443  78 KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG---------------------------NHSTENESLITDLFRGQLKSRL 130
                         170       180
                  ....*....|....*....|....*
gi 808356336  514 ICPVCEKISIKFDPFGYLSLPLPPK 538
Cdd:pfam00443 131 KCLSCGEVSETFEPFSDLSLPIPGD 155
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
777-925 2.10e-42

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 154.75  E-value: 2.10e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 777 KVLLQETLDWFTTKEQLGEQDSWYCPQCKKHERATKQLALWKLPEILILHLKRFQYTKWSREKLTWEVVIPVRGLDLTDK 856
Cdd:cd02674   83 KVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPY 162
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 857 VANPNHEK-AIYDLIAVSRHYGSLSGGHYTAIGYNDREQKWFDFNDSSANPTypPAEPYESSDPYILVYR 925
Cdd:cd02674  163 VDTRSFTGpFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKV--SESSVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
787-924 1.17e-40

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 152.21  E-value: 1.17e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336  787 FTTKEQLGEQDSWYCPQCKKHERATKQLALWKLPEILILHLKRFQYTKWSREKLTWEVVIPvRGLDLTDKVANPN----H 862
Cdd:pfam00443 171 FSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEVEFP-LELDLSRYLAEELkpktN 249
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 808356336  863 EKAIYDLIAVSRHYGSLSGGHYTAIGYNDREQKWFDFNDSSANPTYPPAEPyESSDPYILVY 924
Cdd:pfam00443 250 NLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEETAV-LSSSAYILFY 310
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
780-925 2.32e-30

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 120.67  E-value: 2.32e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 780 LQETLDWFTTKEQLGEQDSWYCPQCKKHErATKQLALWKLPEILILHLKRFQYT-KWSREKLTWEVVIPVRgLDLTDKVA 858
Cdd:cd02257  101 LEDCLEKFFKEEILEGDNCYKCEKKKKQE-ATKRLKIKKLPPVLIIHLKRFSFNeDGTKEKLNTKVSFPLE-LDLSPYLS 178
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 808356336 859 ------NPNHEKAIYDLIAVSRHYG-SLSGGHYTAIGYNDREQKWFDFNDSS---ANPTYPPAEPYESSDPYILVYR 925
Cdd:cd02257  179 egekdsDSDNGSYKYELVAVVVHSGtSADSGHYVAYVKDPSDGKWYKFNDDKvteVSEEEVLEFGSLSSSAYILFYE 255
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
356-583 5.46e-24

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 103.99  E-value: 5.46e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 356 GLSNLGNTCFMASAFQCLSNMPPLREYFLANTYQNDINEDNPLGThghLAMAVGELMKGMW-SGDYASINPRKFKSIIGQ 434
Cdd:cd02660    2 GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSC---LSCAMDEIFQEFYySGDRSPYGPINLLYLSWK 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 435 FAPRFNGYSQQDAHELMAYVLDGLHEDLNRIKKKPYIEDSDEdaklpeaeyaakswevykmrndSIIVDTLHGQLKSTLI 514
Cdd:cd02660   79 HSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCN----------------------CIIHQTFSGSLQSSVT 136
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 515 CPVCEKISIKFDPFGYLSLPLPPKEqivkqtvivmflTRKWAKFSLGITDTTTVEEaerlMLDKLQ-PEQ 583
Cdd:cd02660  137 CQRCGGVSTTVDPFLDLSLDIPNKS------------TPSWALGESGVSGTPTLSD----CLDRFTrPEK 190
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
780-907 7.88e-24

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 103.61  E-value: 7.88e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 780 LQETLDWFTTKEQLGEqDSWYCPQCKKHERATKQLALWKLPEILILHLKRFQYTKW-SREKLTWEVVIPVRgLDLTD--- 855
Cdd:cd02660  178 LSDCLDRFTRPEKLGD-FAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNkTSRKIDTYVQFPLE-LNMTPyts 255
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 808356336 856 ------KVANPNHEKAIYDLIAVSRHYGSLSGGHYTAIGYNDREQkWFDFNDSSANPT 907
Cdd:cd02660  256 ssigdtQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQGDGQ-WFKFDDAMITRV 312
DUSP smart00695
Domain in ubiquitin-specific proteases;
51-135 1.39e-23

Domain in ubiquitin-specific proteases;


Pssm-ID: 197831  Cd Length: 88  Bit Score: 95.50  E-value: 1.39e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336    51 WYLISQKWWNSLIKAVRDGFVDDVGPIDNSQISeCRNGSFFLKQRLAEQVDYTPVPEILFKRLERFYHIDDdrrDYIQRR 130
Cdd:smart00695   8 WYLISTRWYRQWADFVEGKDGKDPGPIDNSGIL-CSHGGPRLKEHLVEGEDYVLIPEELWNKLVRWYGGGP---GPIPRK 83

                   ....*
gi 808356336   131 VVRKD 135
Cdd:smart00695  84 VVCQG 88
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
354-533 8.99e-23

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 100.04  E-value: 8.99e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 354 ACGLSNLGNTCFMASAFQCLSNMPPLREYFLANTYQNDINednplgTHGHLAMAVGELM-KGMWSGDYASINPRKFKSII 432
Cdd:cd02661    1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCC------NEGFCMMCALEAHvERALASSGPGSAPRIFSSNL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 433 GQFAPRFNGYSQQDAHELMAYVLDGLHED-LNRIKKKPYIEDSDedaklpeaeyaakswevykmRNDSIIVDTLHGQLKS 511
Cdd:cd02661   75 KQISKHFRIGRQEDAHEFLRYLLDAMQKAcLDRFKKLKAVDPSS--------------------QETTLVQQIFGGYLRS 134
                        170       180
                 ....*....|....*....|..
gi 808356336 512 TLICPVCEKISIKFDPFGYLSL 533
Cdd:cd02661  135 QVKCLNCKHVSNTYDPFLDLSL 156
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
780-924 1.67e-22

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 99.27  E-value: 1.67e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 780 LQETLDWFTTKEQLGEQDSWYCPQCKKHERATKQLALWKLPEILILHLKRFQYTKwsREKLTWEVVIPVRgLDLTDKVAN 859
Cdd:cd02661  164 LEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFR--GGKINKQISFPET-LDLSPYMSQ 240
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 808356336 860 PNHEKAIYDLIAVSRHYG-SLSGGHYTAIGYNDREQkWFDFNDSSANPTypPAEPYESSDPYILVY 924
Cdd:cd02661  241 PNDGPLKYKLYAVLVHSGfSPHSGHYYCYVKSSNGK-WYNMDDSKVSPV--SIETVLSQKAYILFY 303
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
356-538 1.17e-19

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 88.88  E-value: 1.17e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 356 GLSNLGNTCFMASAFQCLSNMpplreyflantyqndinednplgthghlamavgelmkgmwsgdyasinprkfksiigqf 435
Cdd:cd02674    1 GLRNLGNTCYMNSILQCLSAD----------------------------------------------------------- 21
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 436 aprfngysQQDAHELMAYVLDGLHedlnrikkkpyiedsdedaklpeaeyaakswevykmrndSIIVDTLHGQLKSTLIC 515
Cdd:cd02674   22 --------QQDAQEFLLFLLDGLH---------------------------------------SIIVDLFQGQLKSRLTC 54
                        170       180
                 ....*....|....*....|...
gi 808356336 516 PVCEKISIKFDPFGYLSLPLPPK 538
Cdd:cd02674   55 LTCGKTSTTFEPFTYLSLPIPSG 77
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
356-541 1.29e-18

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 87.06  E-value: 1.29e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 356 GLSNLGNTCFMASAFQCLSNMPPLREYFLANtyqndinednplgthghlamavgelmkgmwsgdyasinPRKFKSIIGQF 435
Cdd:cd02667    1 GLSNLGNTCFFNAVMQNLSQTPALRELLSET--------------------------------------PKELFSQVCRK 42
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 436 APRFNGYSQQDAHELMAYVLDGLhedlnrikkKPYIedsdedaklpeaeyaakswevykmrnDSIIVdtlhGQLKSTLIC 515
Cdd:cd02667   43 APQFKGYQQQDSHELLRYLLDGL---------RTFI--------------------------DSIFG----GELTSTIMC 83
                        170       180
                 ....*....|....*....|....*.
gi 808356336 516 PVCEKISIkfDPFGYLSLPLPPKEQI 541
Cdd:cd02667   84 ESCGTVSL--VYEPFLDLSLPRSDEI 107
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
356-543 1.77e-17

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 83.30  E-value: 1.77e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 356 GLSNLGNTCFMASAFQCLSNMpplreyflantyqndinednplgthghlamavgelmkgmwsgdyasinprkfksiigqf 435
Cdd:cd02257    1 GLNNLGNTCYLNSVLQALFSE----------------------------------------------------------- 21
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 436 aprfngysQQDAHELMAYVLDGLHEDLNRIKKKpyiedsdedaklpeaeyaakswEVYKMRNDSIIVDTLHGQLKSTLIC 515
Cdd:cd02257   22 --------QQDAHEFLLFLLDKLHEELKKSSKR----------------------TSDSSSLKSLIHDLFGGKLESTIVC 71
                        170       180
                 ....*....|....*....|....*...
gi 808356336 516 PVCEKISIKFDPFGYLSLPLPPKEQIVK 543
Cdd:cd02257   72 LECGHESVSTEPELFLSLPLPVKGLPQV 99
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
780-926 1.82e-17

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 85.00  E-value: 1.82e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 780 LQETLDWFTTKEQLGEQDSWYCPQCKKHERATKQLALWKLPEILILHLKRFQY--TKWSREKLTWEVVIPVRgLDL---T 854
Cdd:cd02659  153 LEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFdfETMMRIKINDRFEFPLE-LDMepyT 231
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 855 DK------VANPNHEK--AIYDLIAVSRHYGSLSGGHYTA-IgyNDREQ-KWFDFND---SSANPT---------YPPAE 912
Cdd:cd02659  232 EKglakkeGDSEKKDSesYIYELHGVLVHSGDAHGGHYYSyI--KDRDDgKWYKFNDdvvTPFDPNdaeeecfggEETQK 309
                        170       180
                 ....*....|....*....|..
gi 808356336 913 PYESSDP--------YILVYRR 926
Cdd:cd02659  310 TYDSGPRafkrttnaYMLFYER 331
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
733-926 4.60e-17

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 82.54  E-value: 4.60e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 733 PDENSHDIYSNFLQIVFQWKDL-----------KIFNQYKGNEL-------IEREMTVSTRRKVLLQETLDWFT------ 788
Cdd:COG5533   74 PPMGSQEDAHELLGKLLDELKLdlvnsftirifKTTKDKKKTSTgdwfdiiIELPDQTWVNNLKTLQEFIDNMEelvdde 153
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 789 TKEQLGEQDSWYCpQCKKHERATKQlalwKLPEILILHLKRFQYtKWSREKLTWEVVIPVRGLDLTDKVANPNHEkAIYD 868
Cdd:COG5533  154 TGVKAKENEELEV-QAKQEYEVSFV----KLPKILTIQLKRFAN-LGGNQKIDTEVDEKFELPVKHDQILNIVKE-TYYD 226
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 808356336 869 LIAVSRHYGSLSGGHYTAigYNDREQKWFDFNDSSANP-TYPPAEPYESSDPYILVYRR 926
Cdd:COG5533  227 LVGFVLHQGSLEGGHYIA--YVKKGGKWEKANDSDVTPvSEEEAINEKAKNAYLYFYER 283
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
780-925 1.27e-16

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 82.08  E-value: 1.27e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 780 LQETLDWFTTKEQLGEQDSWYCPQCKKHERATKQLALWKLPEILILHLKRFQYTKWS--REKLTWEVVIPvRGLDLTDKV 857
Cdd:cd02668  158 LEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTgaKKKLNASISFP-EILDMGEYL 236
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 858 ANPNHEKAIYDLIAVSRHYG-SLSGGHYTAIGYNDREQKWFDFNDS--------------SANPTYPPAEPYE-----SS 917
Cdd:cd02668  237 AESDEGSYVYELSGVLIHQGvSAYSGHYIAHIKDEQTGEWYKFNDEdveempgkplklgnSEDPAKPRKSEIKkgthsSR 316

                 ....*...
gi 808356336 918 DPYILVYR 925
Cdd:cd02668  317 TAYMLVYK 324
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
780-921 3.09e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 77.04  E-value: 3.09e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 780 LQETLDWFTTKEQLGEQDSWYCPQCKKherATKQLALWKLPEILILHLKRFQYTKWSR-EKLTWEVVIPVRgLDLT---D 855
Cdd:cd02667  113 IESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSANlRKVSRHVSFPEI-LDLApfcD 188
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 808356336 856 KVANPNHEKA--IYDLIAVSRHYGSLSGGHYTAIGY----NDREQKWFDFNDSSANPTYPPAEPYESSDPYI 921
Cdd:cd02667  189 PKCNSSEDKSsvLYRLYGVVEHSGTMRSGHYVAYVKvrppQQRLSDLTKSKPAADEAGPGSGQWYYISDSDV 260
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
779-925 4.45e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 77.53  E-value: 4.45e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 779 LLQETLDWFTTKEQLGEQDSWYCPQCKKHERATKQLALWKLPEILILHLKRFQYTKWS--REKLTWEVVIPVRgLDLTDK 856
Cdd:cd02664  135 SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKThvREKIMDNVSINEV-LSLPVR 213
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 857 VANPN-------------------HEKAIYDLIAVSRHYG-SLSGGHYTAIGYN--------------------DREQKW 896
Cdd:cd02664  214 VESKSsesplekkeeesgddgelvTRQVHYRLYAVVVHSGySSESGHYFTYARDqtdadstgqecpepkdaeenDESKNW 293
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 808356336 897 FDFNDS----------SANPTYPPAEpyessDPYILVYR 925
Cdd:cd02664  294 YLFNDSrvtfssfesvQNVTSRFPKD-----TPYILFYE 327
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
780-901 7.13e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 76.58  E-value: 7.13e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 780 LQETLDWFTTKEQLGEQDSWYCPQCKKHERATKQLALWKLPEILILHLKRFQYT-KWSR-EKLTWEVVIP--VRGLDLTD 855
Cdd:cd02663  149 ITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDeQLNRyIKLFYRVVFPleLRLFNTTD 228
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 808356336 856 KVANPNHekaIYDLIAVSRHYGslSG---GHYTAIGYNDReqKWFDFND 901
Cdd:cd02663  229 DAENPDR---LYELVAVVVHIG--GGpnhGHYVSIVKSHG--GWLLFDD 270
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
356-465 4.04e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 74.28  E-value: 4.04e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 356 GLSNLGNTCFMASAFQCLSNMPPLREYFLAntyQNDINEDNPLGTHGHLAMAVGELMKGMWSGDYAS------------- 422
Cdd:cd02658    1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDD---LENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKpaslksendpyqv 77
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 808356336 423 -INPRKFKSIIGQFAPRFNGYSQQDAHELMAYVLDGLHEDLNRI 465
Cdd:cd02658   78 gIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN 121
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
352-592 1.03e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 71.20  E-value: 1.03e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 352 PGACGLSNLGNTCFMASAFQCLSNMPPLREYFLANT-YQNDINEDNPLGThghlamAVGELMKGMWsgdyasiNPRKFKs 430
Cdd:cd02669  117 PGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYEnYENIKDRKSELVK------RLSELIRKIW-------NPRNFK- 182
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 431 iiGQFAP-------------RFNGYSQQDAHELMAYVLDGLHEDLNRIKKKpyiedsdedaklpeaeyaakswevykmrN 497
Cdd:cd02669  183 --GHVSPhellqavskvskkKFSITEQSDPVEFLSWLLNTLHKDLGGSKKP----------------------------N 232
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 498 DSIIVDTLHG--QLKSTLICPVCEK-------------ISIKFDPFGYLSLPLPPK--------EQIVKQTVIvmflTRK 554
Cdd:cd02669  233 SSIIHDCFQGkvQIETQKIKPHAEEegskdkffkdsrvKKTSVSPFLLLTLDLPPPplfkdgneENIIPQVPL----KQL 308
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 808356336 555 WAKFSlGITDTTTVEEAERLMLDKLQPeqqhhFVFFHV 592
Cdd:cd02669  309 LKKYD-GKTETELKDSLKRYLISRLPK-----YLIFHI 340
DUSP pfam06337
DUSP domain; The DUSP (domain present in ubiquitin-specific protease) domain is found at the ...
51-118 4.11e-11

DUSP domain; The DUSP (domain present in ubiquitin-specific protease) domain is found at the N-terminus of Ubiquitin-specific proteases. The structure of this domain has been solved. Its tripod-like structure consists of a 3-fold alpha-helical bundle supporting a triple-stranded anti-parallel beta-sheet.


Pssm-ID: 399383  Cd Length: 80  Bit Score: 59.69  E-value: 4.11e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 808356336   51 WYLISQKWWNSLIKAVRDGFvDDVGPIDNSQISECRNgSFFLKQRLAEQVDYTPVPEILFKRLERFYH 118
Cdd:pfam06337   4 VYLISSKWLNKWKSYVKEPN-NEPGPIDNSDLLDDES-NGQLKPNLQEGVDYVIVPEEVWEFLVEWYG 69
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
356-513 1.83e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 63.12  E-value: 1.83e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 356 GLSNLGNTCFMASAFQCLSNMPPLRE---YFLANTYQNDINEDNplgthghLAMAVGELMKGMwSGDYASINPRKFKSII 432
Cdd:cd02657    1 GLTNLGNTCYLNSTLQCLRSVPELRDalkNYNPARRGANQSSDN-------LTNALRDLFDTM-DKKQEPVPPIEFLQLL 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 433 GQFAPRF------NGYSQQDAHELMAYVLDGLHEDLNRIKKKPYIEDSD---------EDAKLPEAEYAAKSwEVYKMR- 496
Cdd:cd02657   73 RMAFPQFaekqnqGGYAQQDAEECWSQLLSVLSQKLPGAGSKGSFIDQLfgieletkmKCTESPDEEEVSTE-SEYKLQc 151
                        170
                 ....*....|....*....
gi 808356336 497 --NDSIIVDTLHGQLKSTL 513
Cdd:cd02657  152 hiSITTEVNYLQDGLKKGL 170
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
763-925 2.71e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 62.73  E-value: 2.71e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 763 NELIEREMTVSTRRKVLLQETLDWFTTKEQLGEqdswYCPQCKKHERATKQLALWKLPEILILHLKRFQYTK-WSREKLT 841
Cdd:cd02658  163 DEATEKEEGELVYEPVPLEDCLKAYFAPETIED----FCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLEnWVPKKLD 238
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 842 WEVVIPVRGLDltdkvanpnhekAIYDLIAVSRHYG-SLSGGHYTAigYN----DREQKWFDFNDS----SANPtyppae 912
Cdd:cd02658  239 VPIDVPEELGP------------GKYELIAFISHKGtSVHSGHYVA--HIkkeiDGEGKWVLFNDEkvvaSQDP------ 298
                        170
                 ....*....|...
gi 808356336 913 PYESSDPYILVYR 925
Cdd:cd02658  299 PEMKKLGYIYFYQ 311
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
790-925 8.87e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 61.19  E-value: 8.87e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 790 KEQLGEQDSWYCPQCKKHERATKQLALWKLPEILILHLKRFQYTKWS--REKLTWEVVIPVRgLDLTDKVANpnheKAIY 867
Cdd:cd02657  167 KKGLEEEIEKHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIqkKAKILRKVKFPFE-LDLYELCTP----SGYY 241
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 808356336 868 DLIAVSRHYG-SLSGGHYTAIGYNDREQKWFDFNDssANPTYPPAEPYESSD-------PYILVYR 925
Cdd:cd02657  242 ELVAVITHQGrSADSGHYVAWVRRKNDGKWIKFDD--DKVSEVTEEDILKLSgggdwhiAYILLYK 305
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
356-536 5.13e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 59.04  E-value: 5.13e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 356 GLSNLGNTCFMASAFQCLSNMPPLREYFLANTYQNDINEDNPLGTHGHLAMAVgelmkgMWSGDYASINPRKFKSiiGQF 435
Cdd:cd02664    1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDSQSVMKKLQLLQAHL------MHTQRRAEAPPDYFLE--ASR 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 436 APRFNGYSQQDAHELMAYVLDGLHedlnrikkkpyiedsdedaklpeaeyaakswevykmrndSIIVDTLHGQLKSTLIC 515
Cdd:cd02664   73 PPWFTPGSQQDCSEYLRYLLDRLH---------------------------------------TLIEKMFGGKLSTTIRC 113
                        170       180
                 ....*....|....*....|.
gi 808356336 516 PVCEKISIKFDPFGYLSLPLP 536
Cdd:cd02664  114 LNCNSTSARTERFRDLDLSFP 134
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
783-925 6.21e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 58.75  E-value: 6.21e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 783 TLDW----FTTKEQLGEQDSWYCPQCKKHERATKQLALWKLPEILILHLKRFQYTKWSR------EKLTWEVVIPVRgLD 852
Cdd:cd02671  181 TLKWaisqFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFdcygglSKVNTPLLTPLK-LS 259
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 853 LTDKVANPnhEKAIYDLIAVSRHYG-SLSGGHYTAigyndrEQKWFDFNDS------------SANPTYPPaepyeSSDP 919
Cdd:cd02671  260 LEEWSTKP--KNDVYRLFAVVMHSGaTISSGHYTA------YVRWLLFDDSevkvteekdfleALSPNTSS-----TSTP 326

                 ....*.
gi 808356336 920 YILVYR 925
Cdd:cd02671  327 YLLFYK 332
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
356-537 5.51e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 55.39  E-value: 5.51e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 356 GLSNLGNTCFMASAFQCLsnmpplreYFlANTYQndinednplgthghlamAVGELMKGMWSGDY--ASINPRKFKSIIG 433
Cdd:cd02663    1 GLENFGNTCYCNSVLQAL--------YF-ENLLT-----------------CLKDLFESISEQKKrtGVISPKKFITRLK 54
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 434 QFAPRFNGYSQQDAHELMAYVLDGLHEDLNRIKKKpyiedsdEDAKLPEAEYAAKSWEVykmrndSIIVDTLHGQLKSTL 513
Cdd:cd02663   55 RENELFDNYMHQDAHEFLNFLLNEIAEILDAERKA-------EKANRKLNNNNNAEPQP------TWVHEIFQGILTNET 121
                        170       180
                 ....*....|....*....|....
gi 808356336 514 ICPVCEKISIKFDPFGYLSLPLPP 537
Cdd:cd02663  122 RCLTCETVSSRDETFLDLSIDVEQ 145
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
356-462 9.49e-08

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 54.81  E-value: 9.49e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 356 GLSNLGNTCFMASAFQCLS-NMPPLREY-----FLANTYQNDINEDNPLGTHgHLAMAvgeLMKGMWSGDYAsinprkfk 429
Cdd:COG5533    1 GLPNLGNTCFMNSVLQILAlYLPKLDELlddlsKELKVLKNVIRKPEPDLNQ-EEALK---LFTALWSSKEH-------- 68
                         90       100       110
                 ....*....|....*....|....*....|...
gi 808356336 430 siigQFAPRFNGYSQQDAHELMAYVLDGLHEDL 462
Cdd:COG5533   69 ----KVGWIPPMGSQEDAHELLGKLLDELKLDL 97
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
818-901 1.86e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 54.63  E-value: 1.86e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 818 KLPEILILHLKRFQYTKWSREKLTWEVVIPVRGLDLTDKVANP---NHEKAIYDLIAVSRHYGSLSG-GHYTAIGYNDRE 893
Cdd:cd02669  331 RLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDkpsLNLSTKYNLVANIVHEGTPQEdGTWRVQLRHKST 410

                 ....*...
gi 808356336 894 QKWFDFND 901
Cdd:cd02669  411 NKWFEIQD 418
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
818-924 3.57e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 49.09  E-value: 3.57e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 818 KLPEILILHLKRFQYTKWSREKLTWEVVIPvrgldltdkvanPNHEKAIYDLIAVSRHYGSLSGGHYTAIGYNDREQKWF 897
Cdd:cd02665  127 ELPPVLTFELSRFEFNQGRPEKIHDKLEFP------------QIIQQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWE 194
                         90       100       110
                 ....*....|....*....|....*....|...
gi 808356336 898 DFNDSSANPT-YPPAEP-----YESSDPYILVY 924
Cdd:cd02665  195 KYNDISVTESsWEEVERdsfggGRNPSAYCLMY 227
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
356-460 7.52e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 49.12  E-value: 7.52e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 356 GLSNLGNTCFMASAFQCLsnmpplreYFLANTYQNDINEDNPLGTHGHLaMAVGELMKGMWSGDYASINPRKFKSIIGQF 435
Cdd:cd02671   26 GLNNLGNTCYLNSVLQVL--------YFCPGFKHGLKHLVSLISSVEQL-QSSFLLNPEKYNDELANQAPRRLLNALREV 96
                         90       100
                 ....*....|....*....|....*
gi 808356336 436 APRFNGYSQQDAHELMAYVLDGLHE 460
Cdd:cd02671   97 NPMYEGYLQHDAQEVLQCILGNIQE 121
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
780-948 1.73e-05

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 49.10  E-value: 1.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336  780 LQETLDWFTTKEQLGEQDSWYCpqcKKH--ERATKQLALWKLPEILILHLKRFQYtKWSREKLT-----WEVVIPVRGLD 852
Cdd:COG5077   340 LQESFRRYIQVETLDGDNRYNA---EKHglQDAKKGVIFESLPPVLHLQLKRFEY-DFERDMMVkindrYEFPLEIDLLP 415
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336  853 LTDKVANPNHEK-AIYDLIAVSRHYGSLSGGHYTAIGYNDREQKWFDFNDSSANPT-------------YPPAEPYESSD 918
Cdd:COG5077   416 FLDRDADKSENSdAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRAtekevleenfggdHPYKDKIRDHS 495
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 808356336  919 P-------YILVY-RRRKLDSNGKPIEPSAVSESLHSR 948
Cdd:COG5077   496 GikrfmsaYMLVYlRKSMLDDLLNPVAAVDIPPHVEEV 533
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
356-394 4.19e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 46.21  E-value: 4.19e-05
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 808356336 356 GLSNLGNTCFMASAFQCLSNMPPLREYFLANTYQNDINE 394
Cdd:cd02662    1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFLEQQDAHE 39
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
780-887 5.11e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 45.82  E-value: 5.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 780 LQETLDWFTTKEQLgeqDSWYCPQCkkheratkQLALWKLPEILILHLKRFQYT-KWSREKLTWEVVIPVRgldLTDKva 858
Cdd:cd02662   98 LEHCLDDFLSTEII---DDYKCDRC--------QTVIVRLPQILCIHLSRSVFDgRGTSTKNSCKVSFPER---LPKV-- 161
                         90       100
                 ....*....|....*....|....*....
gi 808356336 859 npnhekaIYDLIAVSRHYGSLSGGHYTAI 887
Cdd:cd02662  162 -------LYRLRAVVVHYGSHSSGHYVCY 183
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
353-473 1.66e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 41.86  E-value: 1.66e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 353 GACGLSNLGNTCFMASAFQCLSNMPPLREYFlantYQNDINEDNPLGTHGHLAMAVgeLMKGMWSGDYASINPR---KFK 429
Cdd:cd02659    1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAV----YSIPPTEDDDDNKSVPLALQR--LFLFLQLSESPVKTTEltdKTR 74
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 808356336 430 SIIGQfapRFNGYSQQDAHELMAYVLDGLHEDLNRIKKKPYIED 473
Cdd:cd02659   75 SFGWD---SLNTFEQHDVQEFFRVLFDKLEEKLKGTGQEGLIKN 115
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
356-535 2.80e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 40.87  E-value: 2.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 356 GLSNLGNTCFMASAFQCLSNMPPLREYFLANTYQNDINEDN-PLGTHGHLAMAVGELMK---GMWSGDYASINPRKFKSi 431
Cdd:cd02668    1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNmPPDKPHEPQTIIDQLQLifaQLQFGNRSVVDPSGFVK- 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356336 432 igqfAPRFNGYSQQDAHELMAYVLDglhedlnrikkkpYIEDSDEDAKLPEAEyaakswevykmrndSIIVDTLHGQLKS 511
Cdd:cd02668   80 ----ALGLDTGQQQDAQEFSKLFLS-------------LLEAKLSKSKNPDLK--------------NIVQDLFRGEYSY 128
                        170       180
                 ....*....|....*....|....
gi 808356336 512 TLICPVCEKISIKFDPFGYLSLPL 535
Cdd:cd02668  129 VTQCSKCGRESSLPSKFYELELQL 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH