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Conserved domains on  [gi|808354907|ref|NP_001293352|]
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Tubby C-terminal domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tub super family cl08308
Tub family;
255-312 1.18e-19

Tub family;


The actual alignment was detected with superfamily member pfam01167:

Pssm-ID: 460094  Cd Length: 251  Bit Score: 86.48  E-value: 1.18e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 808354907  255 NKTPFWNEQNQVYQLDFGGRVTQESAKNFQI---ELDSKQVLQFGRIEGGSYTLDFRYPFS 312
Cdd:pfam01167 177 NKPPRWNEQLQCYCLNFHGRVTVASVKNFQLvapEDQDKVILQFGKVGKDMFTMDYRYPLS 237
Cytochrom_B562 super family cl01546
Cytochrome b562; This family contains the bacterial cytochrome b562. This forms a four-helix ...
 140-231 6.49e-03

Cytochrome b562; This family contains the bacterial cytochrome b562. This forms a four-helix bundle that non-covalently binds a single heme prosthetic group..


The actual alignment was detected with superfamily member pfam07361:

Pssm-ID: 445465  Cd Length: 101  Bit Score: 35.72  E-value: 6.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808354907  140 ALKTGWAAMEQASkkDAEVIRSHVDKLASIAEQlSKRHGDFNVKRDKASINKMRSQMKTLLRRVNEIEQKVANGDVkTEV 219
Cdd:pfam07361   7 QMKLAYKQAAKAD--DAAELKQALAKLRAAAED-AKEATPPKLEGDSEEFKDYQEGMDKLIAQLDKADALADAGKL-DEA 82

                          90
                  ....*....|..
gi 808354907  220 RQLLNTLNEMKK 231
Cdd:pfam07361  83 KAALKKLKDLRK 94
 
Name Accession Description Interval E-value
Tub pfam01167
Tub family;
255-312 1.18e-19

Tub family;


Pssm-ID: 460094  Cd Length: 251  Bit Score: 86.48  E-value: 1.18e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 808354907  255 NKTPFWNEQNQVYQLDFGGRVTQESAKNFQI---ELDSKQVLQFGRIEGGSYTLDFRYPFS 312
Cdd:pfam01167 177 NKPPRWNEQLQCYCLNFHGRVTVASVKNFQLvapEDQDKVILQFGKVGKDMFTMDYRYPLS 237
Cytochrom_B562 pfam07361
Cytochrome b562; This family contains the bacterial cytochrome b562. This forms a four-helix ...
 140-231 6.49e-03

Cytochrome b562; This family contains the bacterial cytochrome b562. This forms a four-helix bundle that non-covalently binds a single heme prosthetic group..


Pssm-ID: 429427  Cd Length: 101  Bit Score: 35.72  E-value: 6.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808354907  140 ALKTGWAAMEQASkkDAEVIRSHVDKLASIAEQlSKRHGDFNVKRDKASINKMRSQMKTLLRRVNEIEQKVANGDVkTEV 219
Cdd:pfam07361   7 QMKLAYKQAAKAD--DAAELKQALAKLRAAAED-AKEATPPKLEGDSEEFKDYQEGMDKLIAQLDKADALADAGKL-DEA 82

                          90
                  ....*....|..
gi 808354907  220 RQLLNTLNEMKK 231
Cdd:pfam07361  83 KAALKKLKDLRK 94
 
Name Accession Description Interval E-value
Tub pfam01167
Tub family;
255-312 1.18e-19

Tub family;


Pssm-ID: 460094  Cd Length: 251  Bit Score: 86.48  E-value: 1.18e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 808354907  255 NKTPFWNEQNQVYQLDFGGRVTQESAKNFQI---ELDSKQVLQFGRIEGGSYTLDFRYPFS 312
Cdd:pfam01167 177 NKPPRWNEQLQCYCLNFHGRVTVASVKNFQLvapEDQDKVILQFGKVGKDMFTMDYRYPLS 237
Cytochrom_B562 pfam07361
Cytochrome b562; This family contains the bacterial cytochrome b562. This forms a four-helix ...
 140-231 6.49e-03

Cytochrome b562; This family contains the bacterial cytochrome b562. This forms a four-helix bundle that non-covalently binds a single heme prosthetic group..


Pssm-ID: 429427  Cd Length: 101  Bit Score: 35.72  E-value: 6.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808354907  140 ALKTGWAAMEQASkkDAEVIRSHVDKLASIAEQlSKRHGDFNVKRDKASINKMRSQMKTLLRRVNEIEQKVANGDVkTEV 219
Cdd:pfam07361   7 QMKLAYKQAAKAD--DAAELKQALAKLRAAAED-AKEATPPKLEGDSEEFKDYQEGMDKLIAQLDKADALADAGKL-DEA 82

                          90
                  ....*....|..
gi 808354907  220 RQLLNTLNEMKK 231
Cdd:pfam07361  83 KAALKKLKDLRK 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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