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Conserved domains on  [gi|808354829|ref|NP_001293313|]
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Electron transfer flavoprotein subunit beta [Caenorhabditis elegans]

Protein Classification

electron transfer flavoprotein subunit beta/FixA family protein( domain architecture ID 1903851)

electron transfer flavoprotein (ETF) subunit beta/FixA family protein similar to the beta subunit of ETF, which transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase, and protein FixA, which plays a role in a redox process involved in nitrogen fixation

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FixA super family cl43600
Electron transfer flavoprotein, alpha and beta subunits [Energy production and conversion];
1-57 1.11e-09

Electron transfer flavoprotein, alpha and beta subunits [Energy production and conversion];


The actual alignment was detected with superfamily member COG2086:

Pssm-ID: 441689  Cd Length: 261  Bit Score: 51.26  E-value: 1.11e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 808354829   1 MKAKKKPLKNIPIKDLNVDIT------PQTETLEVTEPPVRQAGGFVDD-----VSALVAKLKEKGFV 57
Cdd:COG2086  194 MKAKKKPIEVLSAADLGLDPAkvglkgSPTKVVKVFAPPARRAGEIIEGdpeeaAAELVEKLKEEAKV 261
 
Name Accession Description Interval E-value
FixA COG2086
Electron transfer flavoprotein, alpha and beta subunits [Energy production and conversion];
1-57 1.11e-09

Electron transfer flavoprotein, alpha and beta subunits [Energy production and conversion];


Pssm-ID: 441689  Cd Length: 261  Bit Score: 51.26  E-value: 1.11e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 808354829   1 MKAKKKPLKNIPIKDLNVDIT------PQTETLEVTEPPVRQAGGFVDD-----VSALVAKLKEKGFV 57
Cdd:COG2086  194 MKAKKKPIEVLSAADLGLDPAkvglkgSPTKVVKVFAPPARRAGEIIEGdpeeaAAELVEKLKEEAKV 261
 
Name Accession Description Interval E-value
FixA COG2086
Electron transfer flavoprotein, alpha and beta subunits [Energy production and conversion];
1-57 1.11e-09

Electron transfer flavoprotein, alpha and beta subunits [Energy production and conversion];


Pssm-ID: 441689  Cd Length: 261  Bit Score: 51.26  E-value: 1.11e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 808354829   1 MKAKKKPLKNIPIKDLNVDIT------PQTETLEVTEPPVRQAGGFVDD-----VSALVAKLKEKGFV 57
Cdd:COG2086  194 MKAKKKPIEVLSAADLGLDPAkvglkgSPTKVVKVFAPPARRAGEIIEGdpeeaAAELVEKLKEEAKV 261
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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