NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|765099218|ref|NP_001292171|]
View 

UDP-N-acetylglucosamine transferase subunit ALG14 isoform 2 [Homo sapiens]

Protein Classification

glycosyltransferase family protein( domain architecture ID 56)

glycosyltransferase family protein may synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Glycosyltransferase_GTB-type super family cl10013
glycosyltransferase family 1 and related proteins with GTB topology; Glycosyltransferases ...
 39-92 4.69e-17

glycosyltransferase family 1 and related proteins with GTB topology; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.


The actual alignment was detected with superfamily member pfam08660:

Pssm-ID: 471961  Cd Length: 171  Bit Score: 73.40  E-value: 4.69e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 765099218   39 ILVVAGSGGHTTEILRLLGSL-SNAYSPRHYVIADTDEMSANKINSFELDRADRD 92
Cdd:pfam08660   1 LLVVLGSGGHTGEMLRLLKTLdKNLNIPRTYVVSSGDNMSLEKAKKFESSRGGRD 55
 
Name Accession Description Interval E-value
Alg14 pfam08660
Oligosaccharide biosynthesis protein Alg14 like; Alg14 is involved dolichol-linked ...
 39-92 4.69e-17

Oligosaccharide biosynthesis protein Alg14 like; Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane.


Pssm-ID: 370045  Cd Length: 171  Bit Score: 73.40  E-value: 4.69e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 765099218   39 ILVVAGSGGHTTEILRLLGSL-SNAYSPRHYVIADTDEMSANKINSFELDRADRD 92
Cdd:pfam08660   1 LLVVLGSGGHTGEMLRLLKTLdKNLNIPRTYVVSSGDNMSLEKAKKFESSRGGRD 55
PssD NF041549
PssD/Cps14F family polysaccharide biosynthesis glycosyltransferase;
40-114 1.10e-03

PssD/Cps14F family polysaccharide biosynthesis glycosyltransferase;


Pssm-ID: 469434 [Multi-domain]  Cd Length: 151  Bit Score: 37.11  E-value: 1.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765099218  40 LVVAGSGGHTTEILRLLGSLSNAysPRHYVIADTD---EMSANKINSFELDRADRDPSNmdFSVVWHSLNN--KVYQILH 114
Cdd:NF041549   1 LLIYGSGGHLAQMLRLKPLLDKY--DYFLVTEKSDstkKLEWSYDVHYLLPESRNKNNG--LKYLFKFLKNiiKSFKILR 76
 
Name Accession Description Interval E-value
Alg14 pfam08660
Oligosaccharide biosynthesis protein Alg14 like; Alg14 is involved dolichol-linked ...
 39-92 4.69e-17

Oligosaccharide biosynthesis protein Alg14 like; Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane.


Pssm-ID: 370045  Cd Length: 171  Bit Score: 73.40  E-value: 4.69e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 765099218   39 ILVVAGSGGHTTEILRLLGSL-SNAYSPRHYVIADTDEMSANKINSFELDRADRD 92
Cdd:pfam08660   1 LLVVLGSGGHTGEMLRLLKTLdKNLNIPRTYVVSSGDNMSLEKAKKFESSRGGRD 55
PssD NF041549
PssD/Cps14F family polysaccharide biosynthesis glycosyltransferase;
40-114 1.10e-03

PssD/Cps14F family polysaccharide biosynthesis glycosyltransferase;


Pssm-ID: 469434 [Multi-domain]  Cd Length: 151  Bit Score: 37.11  E-value: 1.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765099218  40 LVVAGSGGHTTEILRLLGSLSNAysPRHYVIADTD---EMSANKINSFELDRADRDPSNmdFSVVWHSLNN--KVYQILH 114
Cdd:NF041549   1 LLIYGSGGHLAQMLRLKPLLDKY--DYFLVTEKSDstkKLEWSYDVHYLLPESRNKNNG--LKYLFKFLKNiiKSFKILR 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH