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Conserved domains on  [gi|687569497|ref|NP_001288804|]
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C-C motif chemokine 28 isoform b [Homo sapiens]

Protein Classification

CC/CxC family chemokine( domain architecture ID 10441213)

CC/CxC family chemokine similar to human C-X-C motif chemokine 14, which is preferentially expressed in normal vs malignant tissue and as a chemokine is involved in the regulation of leukocyte infiltration into inflamed tissue and may affect disease processes

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
IL8 pfam00048
Small cytokines (intecrine/chemokine), interleukin-8 like; Includes a number of secreted ...
2-39 2.44e-05

Small cytokines (intecrine/chemokine), interleukin-8 like; Includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity. Structure contains two highly conserved disulfide bonds.


:

Pssm-ID: 459650  Cd Length: 60  Bit Score: 38.02  E-value: 2.44e-05
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 687569497   2 CRIQRADGDCDLAAVILH-VKRRRICVSPHNHTVKQWMK 39
Cdd:pfam00048 20 YEIQPASSSCPKPAVIFLtKKGRQVCADPKAKWVQRLIK 58
 
Name Accession Description Interval E-value
IL8 pfam00048
Small cytokines (intecrine/chemokine), interleukin-8 like; Includes a number of secreted ...
2-39 2.44e-05

Small cytokines (intecrine/chemokine), interleukin-8 like; Includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity. Structure contains two highly conserved disulfide bonds.


Pssm-ID: 459650  Cd Length: 60  Bit Score: 38.02  E-value: 2.44e-05
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 687569497   2 CRIQRADGDCDLAAVILH-VKRRRICVSPHNHTVKQWMK 39
Cdd:pfam00048 20 YEIQPASSSCPKPAVIFLtKKGRQVCADPKAKWVQRLIK 58
Chemokine_CC_DCCL cd01119
Chemokine_CC_DCCL: subgroup of the Chemokine_CC subgroup based on the presence of a DCCL ...
3-39 2.93e-03

Chemokine_CC_DCCL: subgroup of the Chemokine_CC subgroup based on the presence of a DCCL motif involving the two N-terminal cysteine residues; includes a number of small inducible cytokines capable of reversibly inhibiting normal hematopoietic progenitor proliferation by blocking progression through the cell cycle; DCCL subgroup contains Exodus-1 (also known as CCL20, MIP-3alpha, LARC, ST38 (mouse)), Exodus-2 (also known as CCL21, SLC, 6-Ckine, TCA4, CKbeta9), and Exodus-3 (also known as CCL-19, ELC, MIP-3beta, CKbeta11). Exodus-3 was shown to inhibit the growth of human breast cancer cells in vivo in a mouse model; Exodus-1, -2, and -3 were all shown to significantly inhibit chronic myelogenous leukemia progenitor cell proliferation; Exodus-2 and -3 show potent immunotherapeutic activity toward solid tumors; chemotatic for T cells, B cells, dendritic cells, macrophage progenitor cells, and NK cells; exist as monomers and dimers, but are believed to be functional as monomers; found only in vertebrates. See CDs: Chemokine_CC (cd00272) for the entire CC subgroup, Chemokine (cd00169) for the general alignment of chemokines, or Chemokine_CXC (cd00273), Chemokine_C (cd00271), and Chemokine_CX3C (cd00274) for the additional chemokine subgroups.


Pssm-ID: 238539  Cd Length: 61  Bit Score: 32.76  E-value: 2.93e-03
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 687569497  3 RIQRADGDCDLAAVILHVKRRR-ICVSPHNHTVKQWMK 39
Cdd:cd01119  21 TYQEISESCDIPAIIFHTRRGRkVCADPKQDWVKRAIQ 58
 
Name Accession Description Interval E-value
IL8 pfam00048
Small cytokines (intecrine/chemokine), interleukin-8 like; Includes a number of secreted ...
2-39 2.44e-05

Small cytokines (intecrine/chemokine), interleukin-8 like; Includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity. Structure contains two highly conserved disulfide bonds.


Pssm-ID: 459650  Cd Length: 60  Bit Score: 38.02  E-value: 2.44e-05
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 687569497   2 CRIQRADGDCDLAAVILH-VKRRRICVSPHNHTVKQWMK 39
Cdd:pfam00048 20 YEIQPASSSCPKPAVIFLtKKGRQVCADPKAKWVQRLIK 58
Chemokine_CC_DCCL cd01119
Chemokine_CC_DCCL: subgroup of the Chemokine_CC subgroup based on the presence of a DCCL ...
3-39 2.93e-03

Chemokine_CC_DCCL: subgroup of the Chemokine_CC subgroup based on the presence of a DCCL motif involving the two N-terminal cysteine residues; includes a number of small inducible cytokines capable of reversibly inhibiting normal hematopoietic progenitor proliferation by blocking progression through the cell cycle; DCCL subgroup contains Exodus-1 (also known as CCL20, MIP-3alpha, LARC, ST38 (mouse)), Exodus-2 (also known as CCL21, SLC, 6-Ckine, TCA4, CKbeta9), and Exodus-3 (also known as CCL-19, ELC, MIP-3beta, CKbeta11). Exodus-3 was shown to inhibit the growth of human breast cancer cells in vivo in a mouse model; Exodus-1, -2, and -3 were all shown to significantly inhibit chronic myelogenous leukemia progenitor cell proliferation; Exodus-2 and -3 show potent immunotherapeutic activity toward solid tumors; chemotatic for T cells, B cells, dendritic cells, macrophage progenitor cells, and NK cells; exist as monomers and dimers, but are believed to be functional as monomers; found only in vertebrates. See CDs: Chemokine_CC (cd00272) for the entire CC subgroup, Chemokine (cd00169) for the general alignment of chemokines, or Chemokine_CXC (cd00273), Chemokine_C (cd00271), and Chemokine_CX3C (cd00274) for the additional chemokine subgroups.


Pssm-ID: 238539  Cd Length: 61  Bit Score: 32.76  E-value: 2.93e-03
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 687569497  3 RIQRADGDCDLAAVILHVKRRR-ICVSPHNHTVKQWMK 39
Cdd:cd01119  21 TYQEISESCDIPAIIFHTRRGRkVCADPKQDWVKRAIQ 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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