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Conserved domains on  [gi|665395400|ref|NP_001287593|]
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claret, isoform C [Drosophila melanogaster]

Protein Classification

RCC1 domain-containing protein( domain architecture ID 11474102)

RCC1 (regulator of chromosome condensation) domain-containing protein similar to Arabidopsis UVR8 (UV RESISTANCE LOCUS 8), which plays an important role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway.

Gene Ontology:  GO:0003682|GO:0005085
PubMed:  9510255|18442486

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 1181-1587 2.40e-38

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 147.82  E-value: 2.40e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1181 GRQHTLILTNNG-LYSLGNNNLCQLGIGrHMQMALQPMLVTALDgmNITMLEAGQYHNAAV-ADGKLYMWGWGIYGQLGQ 1258
Cdd:COG5184     6 GGSHSCALKSDGtVWCWGDNSYGQLGDG-TTTDRSTPVRVPGLS--NVVAVAAGGDHTCALkADGTVWCWGNNSYGQLGD 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1259 GSCENIATPQLVSffKFKKILQISLGHAHTLVLcgapnshmeanHCGNELFVFGSNHFGQLGTGNSDHGDTktnlPVRLE 1338
Cdd:COG5184    83 GTTTDRTTPVKVP--GLTGVVAVAAGYYHSCAL-----------KSDGTVWCWGDNSSGQLGDGTTTNRLT----PVQVD 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1339 VGDCSLRLIHTKFFTNLAVDEQDRLFTWGSspqalrlanqikrranakqkmeeNQQRELLSKQLEATLLPAPIPSTSTLV 1418
Cdd:COG5184   146 AGLSGVVAIAAGGYHTCALKSDGTVWCWGA-----------------------NSYGQLGDGTTTDRPTPVQVGGLSGVV 202

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1419 epttsyaAVVAGSTpkSSVSDTKD----C--QDVQNEAAPsdatetiapasakaapppvpvasppvlvpePDPTEHLTPH 1492
Cdd:COG5184   203 -------AVAAGGD--HSCALKSDgtvwCwgSNSSGQLGD------------------------------GTTTDRATPV 243

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1493 LVDTSEvagRILQISSGLFHFCLISSSCTLYTWGKNLEHQLGTEDKDRRAVlkPSPIDSIERPMYVDCGSDFTLVMTTDH 1572
Cdd:COG5184   244 QVAGLT---GVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDGTTTDRST--PVKVPGLSGVVAVAAGSSHTCALLTDG 318

                         410
                  ....*....|....*
gi 665395400 1573 VVRAFGGNSNGQCGR 1587
Cdd:COG5184   319 TVWCWGDNAYGQLGD 333
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 1181-1587 2.40e-38

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 147.82  E-value: 2.40e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1181 GRQHTLILTNNG-LYSLGNNNLCQLGIGrHMQMALQPMLVTALDgmNITMLEAGQYHNAAV-ADGKLYMWGWGIYGQLGQ 1258
Cdd:COG5184     6 GGSHSCALKSDGtVWCWGDNSYGQLGDG-TTTDRSTPVRVPGLS--NVVAVAAGGDHTCALkADGTVWCWGNNSYGQLGD 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1259 GSCENIATPQLVSffKFKKILQISLGHAHTLVLcgapnshmeanHCGNELFVFGSNHFGQLGTGNSDHGDTktnlPVRLE 1338
Cdd:COG5184    83 GTTTDRTTPVKVP--GLTGVVAVAAGYYHSCAL-----------KSDGTVWCWGDNSSGQLGDGTTTNRLT----PVQVD 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1339 VGDCSLRLIHTKFFTNLAVDEQDRLFTWGSspqalrlanqikrranakqkmeeNQQRELLSKQLEATLLPAPIPSTSTLV 1418
Cdd:COG5184   146 AGLSGVVAIAAGGYHTCALKSDGTVWCWGA-----------------------NSYGQLGDGTTTDRPTPVQVGGLSGVV 202

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1419 epttsyaAVVAGSTpkSSVSDTKD----C--QDVQNEAAPsdatetiapasakaapppvpvasppvlvpePDPTEHLTPH 1492
Cdd:COG5184   203 -------AVAAGGD--HSCALKSDgtvwCwgSNSSGQLGD------------------------------GTTTDRATPV 243

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1493 LVDTSEvagRILQISSGLFHFCLISSSCTLYTWGKNLEHQLGTEDKDRRAVlkPSPIDSIERPMYVDCGSDFTLVMTTDH 1572
Cdd:COG5184   244 QVAGLT---GVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDGTTTDRST--PVKVPGLSGVVAVAAGSSHTCALLTDG 318

                         410
                  ....*....|....*
gi 665395400 1573 VVRAFGGNSNGQCGR 1587
Cdd:COG5184   319 TVWCWGDNAYGQLGD 333
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
1242-1291 1.32e-15

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 72.55  E-value: 1.32e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 665395400  1242 DGKLYMWGWGIYGQLGQGSCENIATPQLVSFFKFKKILQISLGHAHTLVL 1291
Cdd:pfam00415    1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 1181-1587 2.40e-38

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 147.82  E-value: 2.40e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1181 GRQHTLILTNNG-LYSLGNNNLCQLGIGrHMQMALQPMLVTALDgmNITMLEAGQYHNAAV-ADGKLYMWGWGIYGQLGQ 1258
Cdd:COG5184     6 GGSHSCALKSDGtVWCWGDNSYGQLGDG-TTTDRSTPVRVPGLS--NVVAVAAGGDHTCALkADGTVWCWGNNSYGQLGD 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1259 GSCENIATPQLVSffKFKKILQISLGHAHTLVLcgapnshmeanHCGNELFVFGSNHFGQLGTGNSDHGDTktnlPVRLE 1338
Cdd:COG5184    83 GTTTDRTTPVKVP--GLTGVVAVAAGYYHSCAL-----------KSDGTVWCWGDNSSGQLGDGTTTNRLT----PVQVD 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1339 VGDCSLRLIHTKFFTNLAVDEQDRLFTWGSspqalrlanqikrranakqkmeeNQQRELLSKQLEATLLPAPIPSTSTLV 1418
Cdd:COG5184   146 AGLSGVVAIAAGGYHTCALKSDGTVWCWGA-----------------------NSYGQLGDGTTTDRPTPVQVGGLSGVV 202

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1419 epttsyaAVVAGSTpkSSVSDTKD----C--QDVQNEAAPsdatetiapasakaapppvpvasppvlvpePDPTEHLTPH 1492
Cdd:COG5184   203 -------AVAAGGD--HSCALKSDgtvwCwgSNSSGQLGD------------------------------GTTTDRATPV 243

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1493 LVDTSEvagRILQISSGLFHFCLISSSCTLYTWGKNLEHQLGTEDKDRRAVlkPSPIDSIERPMYVDCGSDFTLVMTTDH 1572
Cdd:COG5184   244 QVAGLT---GVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDGTTTDRST--PVKVPGLSGVVAVAAGSSHTCALLTDG 318

                         410
                  ....*....|....*
gi 665395400 1573 VVRAFGGNSNGQCGR 1587
Cdd:COG5184   319 TVWCWGDNAYGQLGD 333
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 1115-1368 1.90e-28

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 118.54  E-value: 1.90e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1115 SRFKPISAGcAYCACVV--DGTAYFWGSSgipsyYSAQ----KSTEPPEPAHAVKSLDllsqlnlQVHAIKCGRQHTLIL 1188
Cdd:COG5184    98 TGVVAVAAG-YYHSCALksDGTVWCWGDN-----SSGQlgdgTTTNRLTPVQVDAGLS-------GVVAIAAGGYHTCAL 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1189 TNNG-LYSLGNNNLCQLGIGrHMQMALQPMLVTALDGmnITMLEAGQYHNAAVA-DGKLYMWGWGIYGQLGQGSCENIAT 1266
Cdd:COG5184   165 KSDGtVWCWGANSYGQLGDG-TTTDRPTPVQVGGLSG--VVAVAAGGDHSCALKsDGTVWCWGSNSSGQLGDGTTTDRAT 241

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1267 PQLVSFfkFKKILQISLGHAHTLVLCGapnshmeanhcGNELFVFGSNHFGQLGTGNSDHGDTktnlPVRLEVGDcSLRL 1346
Cdd:COG5184   242 PVQVAG--LTGVVAIAAGGSHTCALKS-----------DGTVWCWGDNSYGQLGDGTTTDRST----PVKVPGLS-GVVA 303

                         250       260
                  ....*....|....*....|..
gi 665395400 1347 IHTKFFTNLAVDEQDRLFTWGS 1368
Cdd:COG5184   304 VAAGSSHTCALLTDGTVWCWGD 325
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 1120-1543 8.31e-27

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 113.92  E-value: 8.31e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1120 ISAGCAY-CACVVDGTAYFWGS--SGIPSYYSAQKSTEPPEpahaVKSLDllsqlnlQVHAIKCGRQHTLILTNNG-LYS 1195
Cdd:COG5184     3 VAAGGSHsCALKSDGTVWCWGDnsYGQLGDGTTTDRSTPVR----VPGLS-------NVVAVAAGGDHTCALKADGtVWC 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1196 LGNNNLCQLGIGrHMQMALQPMLVTALDgmNITMLEAGQYHNAAV-ADGKLYMWGWGIYGQLGQGSCENIATPQLVSFfK 1274
Cdd:COG5184    72 WGNNSYGQLGDG-TTTDRTTPVKVPGLT--GVVAVAAGYYHSCALkSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVDA-G 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1275 FKKILQISLGHAHTLVLCGApnshmeanhcgNELFVFGSNHFGQLGTGNSDHGDTKTNLPVRLEVGDCSLRLIHTkfftn 1354
Cdd:COG5184   148 LSGVVAIAAGGYHTCALKSD-----------GTVWCWGANSYGQLGDGTTTDRPTPVQVGGLSGVVAVAAGGDHS----- 211

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1355 LAVDEQDRLFTWGSspqalrlanqikrranakqkmeeNQQRELLSKQLEATLLPAPIPSTSTLVepttsyaAVVAGSTpk 1434
Cdd:COG5184   212 CALKSDGTVWCWGS-----------------------NSSGQLGDGTTTDRATPVQVAGLTGVV-------AIAAGGS-- 259

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1435 SSVSDTKDcQDVQ----NEAAP-SDATETiapasakaapppvpvasppvlvpepdptEHLTPHLVDtseVAGRILQISSG 1509
Cdd:COG5184   260 HTCALKSD-GTVWcwgdNSYGQlGDGTTT----------------------------DRSTPVKVP---GLSGVVAVAAG 307

                         410       420       430
                  ....*....|....*....|....*....|....
gi 665395400 1510 LFHFCLISSSCTLYTWGKNLEHQLGTEDKDRRAV 1543
Cdd:COG5184   308 SSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRST 341
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 1120-1268 1.03e-17

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 86.95  E-value: 1.03e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1120 ISAGCAY-CACVVDGTAYFWGSSgipsyYSAQKSTEPPEPAHAVKSLDLLSQlnlqVHAIKCGRQHTLILTNNG-LYSLG 1197
Cdd:COG5184   204 VAAGGDHsCALKSDGTVWCWGSN-----SSGQLGDGTTTDRATPVQVAGLTG----VVAIAAGGSHTCALKSDGtVWCWG 274

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 665395400 1198 NNNLCQLGIGRHMQmALQPMLVTALDgmNITMLEAGQYHNAAV-ADGKLYMWGWGIYGQLGQGSCENIATPQ 1268
Cdd:COG5184   275 DNSYGQLGDGTTTD-RSTPVKVPGLS--GVVAVAAGSSHTCALlTDGTVWCWGDNAYGQLGDGTTTDRSTPV 343
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
1242-1291 1.32e-15

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 72.55  E-value: 1.32e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 665395400  1242 DGKLYMWGWGIYGQLGQGSCENIATPQLVSFFKFKKILQISLGHAHTLVL 1291
Cdd:pfam00415    1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 1505-1587 8.76e-13

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 71.93  E-value: 8.76e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1505 QISSGLFHFCLISSSCTLYTWGKNLEHQLGTEDKDRRAVlkPSPIDSIERPMYVDCGSDFTLVMTTDHVVRAFGGNSNGQ 1584
Cdd:COG5184     2 QVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRST--PVRVPGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYGQ 79


                  ...
gi 665395400 1585 CGR 1587
Cdd:COG5184    80 LGD 82
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 1280-1586 5.34e-12

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 69.62  E-value: 5.34e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1280 QISLGHAHTLVLCGapnshmeanhcGNELFVFGSNHFGQLGTGNSDHGDTktnlPVRLeVGDCSLRLIHTKFFTNLAVDE 1359
Cdd:COG5184     2 QVAAGGSHSCALKS-----------DGTVWCWGDNSYGQLGDGTTTDRST----PVRV-PGLSNVVAVAAGGDHTCALKA 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1360 QDRLFTWGSSPqalrlanqikrranakqkmeenqqrellSKQL-EATLLPAPIPstsTLVEPTTSYAAVVAGS------T 1432
Cdd:COG5184    66 DGTVWCWGNNS----------------------------YGQLgDGTTTDRTTP---VKVPGLTGVVAVAAGYyhscalK 114

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1433 PKSSVSdtkdC--QDVQNEAAPSDATETiapasakaapppvpvasppvlvpepdptehLTPHLVDTSevAGRILQISSGL 1510
Cdd:COG5184   115 SDGTVW----CwgDNSSGQLGDGTTTNR------------------------------LTPVQVDAG--LSGVVAIAAGG 158

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 665395400 1511 FHFCLISSSCTLYTWGKNLEHQLGTEDKDRRAVlkPSPIDSIERPMYVDCGSDFTLVMTTDHVVRAFGGNSNGQCG 1586
Cdd:COG5184   159 YHTCALKSDGTVWCWGANSYGQLGDGTTTDRPT--PVQVGGLSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLG 232
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 1228-1586 4.71e-11

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 66.54  E-value: 4.71e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1228 TMLEAGQYHNAAV-ADGKLYMWGWGIYGQLGQGSCENIATPQLVSffKFKKILQISLGHAHTLVLcgapnshmeanHCGN 1306
Cdd:COG5184     1 TQVAAGGSHSCALkSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVP--GLSNVVAVAAGGDHTCAL-----------KADG 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1307 ELFVFGSNHFGQLGTGNSDHGDTktnlpvrlevgdcslrlihtkfftnlavdeqdrlftwgsspqalrlanqikrranak 1386
Cdd:COG5184    68 TVWCWGNNSYGQLGDGTTTDRTT--------------------------------------------------------- 90

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1387 qkmeenqqrellskqleatllPAPIPSTSTlvepttsyaavvagstpkssvsdtkdcqdvqneaapsdatetiapasaka 1466
Cdd:COG5184    91 ---------------------PVKVPGLTG-------------------------------------------------- 99

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665395400 1467 apppvpvasppvlvpepdptehltphlvdtsevagrILQISSGLFHFCLISSSCTLYTWGKNLEHQLGTEDKDRRAVlkP 1546
Cdd:COG5184   100 ------------------------------------VVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLT--P 141

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 665395400 1547 SPID-SIERPMYVDCGSDFTLVMTTDHVVRAFGGNSNGQCG 1586
Cdd:COG5184   142 VQVDaGLSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLG 182
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
1193-1240 2.24e-04

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 40.58  E-value: 2.24e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 665395400  1193 LYSLGNNNLCQLGIGrHMQMALQPMLVTALDGMNITMLEAGQYHNAAV 1240
Cdd:pfam00415    4 VYTWGRNDYGQLGLG-TTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
1522-1568 2.89e-04

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 40.19  E-value: 2.89e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 665395400  1522 LYTWGKNLEHQLGTEDKDRRavLKPSPIDSIE--RPMYVDCGSDFTLVM 1568
Cdd:pfam00415    4 VYTWGRNDYGQLGLGTTENV--LVPQKVEGLSgnKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
1558-1584 3.78e-04

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 39.33  E-value: 3.78e-04
                           10        20
                   ....*....|....*....|....*..
gi 665395400  1558 VDCGSDFTLVMTTDHVVRAFGGNSNGQ 1584
Cdd:pfam13540    4 VAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
1503-1532 8.45e-04

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 38.56  E-value: 8.45e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 665395400  1503 ILQISSGLFHFCLISSSCTLYTWGKNLEHQ 1532
Cdd:pfam13540    1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
1175-1200 1.60e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 37.79  E-value: 1.60e-03
                           10        20
                   ....*....|....*....|....*..
gi 665395400  1175 VHAIKCGRQHTLILTNNG-LYSLGNNN 1200
Cdd:pfam13540    1 VVSVAAGDNHTLALTSDGrVYCWGDNS 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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