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Conserved domains on  [gi|665401939|ref|NP_001286581|]
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zonda, isoform D [Drosophila melanogaster]

Protein Classification

FKBP-type peptidyl-prolyl cis-trans isomerase( domain architecture ID 10446594)

FKBP-type peptidyl-prolyl cis-trans isomerase acts as a PPIase that accelerates the folding of proteins

CATH:  3.10.50.40
EC:  5.2.1.8
Gene Ontology:  GO:0003755|GO:0000413|GO:0061077
PubMed:  27664121
SCOP:  4001062

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
80-172 1.06e-16

FKBP-type peptidyl-prolyl cis-trans isomerase;


:

Pssm-ID: 459735  Cd Length: 94  Bit Score: 74.93  E-value: 1.06e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939   80 RRPIRGELVTVNFTGKLDNGTVVENELN----FQCHVGDYEVIQGLDMVLPMLQVGEVSQVSVDSRFGYGSLGLKkeges 155
Cdd:pfam00254   3 EKAKKGDRVTVHYTGTLEDGTVFDSSYDrgkpFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLA----- 77

                          90
                  ....*....|....*..
gi 665401939  156 EYLVPPDAHLTYEIELL 172
Cdd:pfam00254  78 GPVIPPNATLVFEVELL 94
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 196-338 1.41e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.09  E-value: 1.41e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 196 KERANFFYKRSEFTTAIHLYRRALDFldnrdgDPDSefdkedlelsnsdtqtlledrLIVYNNLAMTQIKIAAYDAALQS 275
Cdd:COG3914   82 ELAALLLQALGRYEEALALYRRALAL------NPDN---------------------AEALFNLGNLLLALGRLEEALAA 134

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 665401939 276 VEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLARLFIKARREE 338
Cdd:COG3914  135 LRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLE 197
 
Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
80-172 1.06e-16

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 74.93  E-value: 1.06e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939   80 RRPIRGELVTVNFTGKLDNGTVVENELN----FQCHVGDYEVIQGLDMVLPMLQVGEVSQVSVDSRFGYGSLGLKkeges 155
Cdd:pfam00254   3 EKAKKGDRVTVHYTGTLEDGTVFDSSYDrgkpFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLA----- 77

                          90
                  ....*....|....*..
gi 665401939  156 EYLVPPDAHLTYEIELL 172
Cdd:pfam00254  78 GPVIPPNATLVFEVELL 94
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 82-174 6.69e-13

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 64.43  E-value: 6.69e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939  82 PIRGELVTVNFTGKLDNGTVVENELN----FQCHVGDYEVIQGLDMVLPMLQVGEVSQVSVDSRFGYGSLGlkkegeSEY 157
Cdd:COG0545   14 PKAGDTVTVHYTGTLLDGTVFDSSYDrgepATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELAYGERG------AGG 87

                         90
                 ....*....|....*..
gi 665401939 158 LVPPDAHLTYEIELLDI 174
Cdd:COG0545   88 VIPPNSTLVFEVELLDV 104
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 196-338 1.41e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.09  E-value: 1.41e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 196 KERANFFYKRSEFTTAIHLYRRALDFldnrdgDPDSefdkedlelsnsdtqtlledrLIVYNNLAMTQIKIAAYDAALQS 275
Cdd:COG3914   82 ELAALLLQALGRYEEALALYRRALAL------NPDN---------------------AEALFNLGNLLLALGRLEEALAA 134

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 665401939 276 VEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLARLFIKARREE 338
Cdd:COG3914  135 LRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLE 197
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 259-332 5.13e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.46  E-value: 5.13e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 665401939  259 LAMTQIKIAAYDAALQSVEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLARLFI 332
Cdd:TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL 408
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 196-320 1.13e-04

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 42.75  E-value: 1.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 196 KERANFFYKRSEFTTAIHLYRRALDFLDNRdgdpdSEFDKEDLElsnsdtqtlledrlIVYNnLAMTQIKIAAYDAALQS 275
Cdd:NF040959  34 RDRAKMYRNKGISHAKKGRYDKAVRYLEQV-----ARIDPDDVE--------------ALYR-LGVAYLKTGQYDRAIKV 93

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 665401939 276 VEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPEN 320
Cdd:NF040959  94 LEKVLSLAPDHVKAAYRKGVALLKIKDYEKAVEDLEEALEEKPDN 138
PRK11570 PRK11570
peptidyl-prolyl cis-trans isomerase; Provisional
 82-174 4.25e-04

peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 183207 [Multi-domain]  Cd Length: 206  Bit Score: 41.32  E-value: 4.25e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939  82 PIRGELVTVNFTGKLDNGTVvenelnFQCHVGDYE--------VIQGLDMVLPMLQVGEVSQVSVDSRFGYGSLGlkkEG 153
Cdd:PRK11570 117 PARTDRVRVHYTGKLIDGTV------FDSSVARGEpaefpvngVIPGWIEALTLMPVGSKWELTIPHELAYGERG---AG 187

                         90       100
                 ....*....|....*....|.
gi 665401939 154 ESeylVPPDAHLTYEIELLDI 174
Cdd:PRK11570 188 AS---IPPFSTLVFEVELLEI 205
 
Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
80-172 1.06e-16

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 74.93  E-value: 1.06e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939   80 RRPIRGELVTVNFTGKLDNGTVVENELN----FQCHVGDYEVIQGLDMVLPMLQVGEVSQVSVDSRFGYGSLGLKkeges 155
Cdd:pfam00254   3 EKAKKGDRVTVHYTGTLEDGTVFDSSYDrgkpFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLA----- 77

                          90
                  ....*....|....*..
gi 665401939  156 EYLVPPDAHLTYEIELL 172
Cdd:pfam00254  78 GPVIPPNATLVFEVELL 94
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 82-174 6.69e-13

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 64.43  E-value: 6.69e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939  82 PIRGELVTVNFTGKLDNGTVVENELN----FQCHVGDYEVIQGLDMVLPMLQVGEVSQVSVDSRFGYGSLGlkkegeSEY 157
Cdd:COG0545   14 PKAGDTVTVHYTGTLLDGTVFDSSYDrgepATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELAYGERG------AGG 87

                         90
                 ....*....|....*..
gi 665401939 158 LVPPDAHLTYEIELLDI 174
Cdd:COG0545   88 VIPPNSTLVFEVELLDV 104
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 196-338 1.41e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.09  E-value: 1.41e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 196 KERANFFYKRSEFTTAIHLYRRALDFldnrdgDPDSefdkedlelsnsdtqtlledrLIVYNNLAMTQIKIAAYDAALQS 275
Cdd:COG3914   82 ELAALLLQALGRYEEALALYRRALAL------NPDN---------------------AEALFNLGNLLLALGRLEEALAA 134

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 665401939 276 VEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLARLFIKARREE 338
Cdd:COG3914  135 LRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLE 197
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
198-338 2.21e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.63  E-value: 2.21e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 198 RANFFYKRSEFTTAIHLYRRALDFldnrdgDPDSE----------FDKEDLELSNSDTQTLLE---DRLIVYNNLAMTQI 264
Cdd:COG0457   14 LGLAYRRLGRYEEAIEDYEKALEL------DPDDAealynlglayLRLGRYEEALADYEQALEldpDDAEALNNLGLALQ 87

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 665401939 265 KIAAYDAALQSVEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLARLFIKARREE 338
Cdd:COG0457   88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 199-330 2.78e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 51.93  E-value: 2.78e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 199 ANFFYKRSEFTTAIHLYRRALDFldnrdgDPDsefdkedlelsNSDtqtlledrliVYNNLAMTQIKIAAYDAALQSVEH 278
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKALRL------DPD-----------NAD----------ALLDLAEALLAAGDTEEAEELLER 76

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 665401939 279 VLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPEN---RAVQSDLARL 330
Cdd:COG4235   77 ALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADapaRLLEASIAEA 131
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 199-354 3.80e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.96  E-value: 3.80e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 199 ANFFYKRSEFTTAIHLYRRALDfldnrdgdpdsefdkedlelsnsdtqtLLEDRLIVYNNLAMTQIKIAAYDAALQSVEH 278
Cdd:COG2956   49 GNLYRRRGEYDRAIRIHQKLLE---------------------------RDPDRAEALLELAQDYLKAGLLDRAEELLEK 101

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 665401939 279 VLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLARLFIKARREEHNEKEmYQKMLGQAKK 354
Cdd:COG2956  102 LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA-LEKALKLDPD 176
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 255-349 4.00e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.73  E-value: 4.00e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 255 VYNNLAMTQIKIAAYDAALQSVEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLARLFIKA 334
Cdd:COG4783    6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                         90
                 ....*....|....*
gi 665401939 335 RREEhNEKEMYQKML 349
Cdd:COG4783   86 GDYD-EALALLEKAL 99
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 197-338 1.11e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.81  E-value: 1.11e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 197 ERANFFYKRSEFTTAIHLYRRALDfldNRDGDPDSEFDKEDLELSNSDTQTLLE--DRLI--------VYNNLAMTQIKI 266
Cdd:COG2956   81 ELAQDYLKAGLLDRAEELLEKLLE---LDPDDAEALRLLAEIYEQEGDWEKAIEvlERLLklgpenahAYCELAELYLEQ 157

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 665401939 267 AAYDAALQSVEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLARLFIKARREE 338
Cdd:COG2956  158 GDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE 229
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
233-357 1.23e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 51.84  E-value: 1.23e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 233 FDKEDLELSNSDTQTLLE---DRLIVYNNLAMTQIKIAAYDAALQSVEHVLRCQPNNSKALYRKGRILEGKADTQGAIKL 309
Cdd:COG4785   84 DSLGDYDLAIADFDQALEldpDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIAD 163

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 665401939 310 LQKVATLEPEN--RAVQSDLARLFI---KARREEHNEKEMYQKMLGQAKKMEQ 357
Cdd:COG4785  164 LEKALELDPNDpeRALWLYLAERKLdpeKALALLLEDWATAYLLQGDTEEARE 216
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
251-347 4.15e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.78  E-value: 4.15e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 251 DRLIVYNNLAMTQIKIAAYDAALQSVEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLARL 330
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85

                         90
                 ....*....|....*...
gi 665401939 331 FikARREEHNE-KEMYQK 347
Cdd:COG0457   86 L--QALGRYEEaLEDYDK 101
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 271-349 9.72e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 47.69  E-value: 9.72e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 665401939 271 AALQSVEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLARLFIKARREEHnEKEMYQKML 349
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEE-AEELLERAL 78
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 233-352 1.30e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.49  E-value: 1.30e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 233 FDKEDLELSNSDTQTLLE---DRLIVYNNLAMTQIKIAAYDAALQSVEHVLRCQPNNSKALYRKGRILEGKADTQGAIKL 309
Cdd:COG4783   15 LLAGDYDEAEALLEKALEldpDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALAL 94

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 665401939 310 LQKVATLEPENRAVQSDLARLFIKARREEHNEKEmYQKMLGQA 352
Cdd:COG4783   95 LEKALKLDPEHPEAYLRLARAYRALGRPDEAIAA-LEKALELD 136
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 256-349 2.58e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.54  E-value: 2.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 256 YNNLAMTQIKIAAYDAALQSVEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLArlFIKAR 335
Cdd:COG4235   20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLG--LAAFQ 97

                         90
                 ....*....|....*
gi 665401939 336 REEHNE-KEMYQKML 349
Cdd:COG4235   98 QGDYAEaIAAWQKLL 112
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 269-353 4.08e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.49  E-value: 4.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 269 YDAALQSVEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLARLFIKARREEhNEKEMYQKM 348
Cdd:COG5010   70 FEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD-EAKAALQRA 148


                 ....*
gi 665401939 349 LGQAK 353
Cdd:COG5010  149 LGTSP 153
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
198-379 5.47e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 47.31  E-value: 5.47e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 198 RANFFYKRSEFTTAIHLYRRALDfLDNRDGDP-----DSEFDKEDLELSNSDTQTLLE---DRLIVYNNLAMTQIKIAAY 269
Cdd:COG0457   48 LGLAYLRLGRYEEALADYEQALE-LDPDDAEAlnnlgLALQALGRYEEALEDYDKALEldpDDAEALYNLGLALLELGRY 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 270 DAALQSVEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLARLFIKARREEHNEKEMYQKML 349
Cdd:COG0457  127 DEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQA 206

                        170       180       190
                 ....*....|....*....|....*....|
gi 665401939 350 GQAKKMEQNTATRQKQPLVDNSKLKLLGYL 379
Cdd:COG0457  207 LRKKLAILTLAALAELLLLALALLLALRLA 236
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 259-332 5.13e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.46  E-value: 5.13e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 665401939  259 LAMTQIKIAAYDAALQSVEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLARLFI 332
Cdd:TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL 408
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 269-334 6.15e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.33  E-value: 6.15e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 665401939 269 YDAALQSVEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLARLFIKA 334
Cdd:COG2956   24 PDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKA 89
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 196-320 1.13e-04

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 42.75  E-value: 1.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 196 KERANFFYKRSEFTTAIHLYRRALDFLDNRdgdpdSEFDKEDLElsnsdtqtlledrlIVYNnLAMTQIKIAAYDAALQS 275
Cdd:NF040959  34 RDRAKMYRNKGISHAKKGRYDKAVRYLEQV-----ARIDPDDVE--------------ALYR-LGVAYLKTGQYDRAIKV 93

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 665401939 276 VEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPEN 320
Cdd:NF040959  94 LEKVLSLAPDHVKAAYRKGVALLKIKDYEKAVEDLEEALEEKPDN 138
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 197-348 1.18e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.56  E-value: 1.18e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 197 ERANFFYKRSEFTTAIHLYRRALDFldnrdgDPDSefdkedlelsnsdtqtlledrLIVYNNLAMTQIKIAAYDAALQSV 276
Cdd:COG2956  149 ELAELYLEQGDYDEAIEALEKALKL------DPDC---------------------ARALLLLAELYLEQGDYEEAIAAL 201

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 665401939 277 EHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSdLARLFIKARREEHNEKEMYQKM 348
Cdd:COG2956  202 ERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA-LADLLERKEGLEAALALLERQL 272
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
202-322 2.08e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.15  E-value: 2.08e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 202 FYKRSEFTTAIHLYRRALDfLDNRDGDpdsefdkedlelsnsdtqtlledrliVYNNLAMTQIKIAAYDAALQsVEHVLR 281
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALE-LDPDNAD--------------------------ALNNLGLLLLEQGRYDEAIA-LEKALK 53

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 665401939 282 CQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRA 322
Cdd:COG3063   54 LDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSALR 94
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 211-349 2.19e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.79  E-value: 2.19e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 211 AIHLYRRALDFLDNRDGDPDSEFDKEDLELSNSDTQTLLedrlivynNLAMTQIKIAAYDAALQSVEHVLRCQPNNSKAL 290
Cdd:COG2956    8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHL--------ALGNLYRRRGEYDRAIRIHQKLLERDPDRAEAL 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 665401939 291 YRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLARLFIKARREEHNEkEMYQKML 349
Cdd:COG2956   80 LELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAI-EVLERLL 137
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 156-318 2.46e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.10  E-value: 2.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 156 EYLVPPDAHLTYEIELLDIKYEEFADLKSFEILRKYGTRKKERANFFYKRSEFTTAIHLYRRALDFldnrdgDPDSEFdk 235
Cdd:COG5010   18 TKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL------DPNNPE-- 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 236 edlelsnsdtqtlledrliVYNNLAMTQIKIAAYDAALQSVEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVAT 315
Cdd:COG5010   90 -------------------LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150


                 ...
gi 665401939 316 LEP 318
Cdd:COG5010  151 TSP 153
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 255-330 2.71e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.97  E-value: 2.71e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 665401939 255 VYNNLAMTQIKIAAYDAALQSVEHVLRCQPNNSK---ALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLARL 330
Cdd:COG1729   32 ALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARARL 110
PRK11570 PRK11570
peptidyl-prolyl cis-trans isomerase; Provisional
 82-174 4.25e-04

peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 183207 [Multi-domain]  Cd Length: 206  Bit Score: 41.32  E-value: 4.25e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939  82 PIRGELVTVNFTGKLDNGTVvenelnFQCHVGDYE--------VIQGLDMVLPMLQVGEVSQVSVDSRFGYGSLGlkkEG 153
Cdd:PRK11570 117 PARTDRVRVHYTGKLIDGTV------FDSSVARGEpaefpvngVIPGWIEALTLMPVGSKWELTIPHELAYGERG---AG 187

                         90       100
                 ....*....|....*....|.
gi 665401939 154 ESeylVPPDAHLTYEIELLDI 174
Cdd:PRK11570 188 AS---IPPFSTLVFEVELLEI 205
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 250-344 5.20e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.38  E-value: 5.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939  250 EDRLIVYNNLAMTQIKiaAYDA-ALQSVEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLA 328
Cdd:TIGR02917 801 PDNAVVLNNLAWLYLE--LKDPrALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLA 878

                          90
                  ....*....|....*.
gi 665401939  329 RLFIKARREEHNEKEM 344
Cdd:TIGR02917 879 LALLATGRKAEARKEL 894
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
269-349 6.26e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.61  E-value: 6.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 269 YDAALQSVEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLlQKVATLEPENRAVQSDLARLFIKARREEhNEKEMYQKM 348
Cdd:COG3063    8 LEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYD-EALAYLERA 85


                 .
gi 665401939 349 L 349
Cdd:COG3063   86 L 86
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 198-379 1.43e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 40.75  E-value: 1.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 198 RANFFYKRSEFTTAIHLYRRALDFldnrdgDPDsefdkedlelsnsdtqtlledRLIVYNNLAMTQIKIAAYDAALQSVE 277
Cdd:COG3914  152 LGEALRRLGRLEEAIAALRRALEL------DPD---------------------NAEALNNLGNALQDLGRLEEAIAAYR 204

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 278 HVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQS---------DLARLFIKARReehnekemYQKM 348
Cdd:COG3914  205 RALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPfallylpddDPAELLALARA--------WAQL 276

                        170       180       190
                 ....*....|....*....|....*....|.
gi 665401939 349 LGQAKKMEQNTATRQKQPlvdNSKLKlLGYL 379
Cdd:COG3914  277 VAAAAAPELPPPPNPRDP---DRKLR-IGYV 303
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 259-366 2.96e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.68  E-value: 2.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939  259 LAMTQIKIAAYDAALQSVEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLARLFIKARREE 338
Cdd:TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686

                          90       100       110
                  ....*....|....*....|....*....|....
gi 665401939  339 hNEKEMYQKMLGQAKK------MEQNTATRQKQP 366
Cdd:TIGR02917 687 -SAKKIAKSLQKQHPKaalgfeLEGDLYLRQKDY 719
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 227-354 3.37e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.68  E-value: 3.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939  227 GDPDSEFdkEDLE-LSNSDTQTLLEDRLivynnLAMTQIKIAAYDAALQSVEHVLRCQPNNSKALYRKGRILEGKADTQG 305
Cdd:TIGR02917 411 GDPSEAI--ADLEtAAQLDPELGRADLL-----LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAK 483

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 665401939  306 AIKLLQKVATLEPENRAVQSDLARLFIKARREEHNEKEmYQKMLGQAKK 354
Cdd:TIGR02917 484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR-FEKVLTIDPK 531
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 271-342 7.28e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 38.53  E-value: 7.28e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 665401939  271 AALQSVEHVLRCQPNNSKALYRKGRILEGKADTQGAIKLLQKVATLEPENRAVQSDLARLFIK---ARREEHNEK 342
Cdd:TIGR02917 754 EAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLElkdPRALEYAER 828
SlpA COG1047
Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein ...
 88-145 7.73e-03

Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440668 [Multi-domain]  Cd Length: 138  Bit Score: 36.62  E-value: 7.73e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 665401939  88 VTVNFTGKLDNGTVVEN-----ELNFQchVGDYEVIQGLDMVLPMLQVGEVSQVSVDSRFGYG 145
Cdd:COG1047    7 VTLHYTLKLEDGEVFDStfegePLEFL--HGAGQLIPGLEEALEGMEVGDKKTVTLPPEEAYG 67
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
214-320 7.81e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 37.59  E-value: 7.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665401939 214 LYRRALDFLDNRDGDPDSEFDKEDLELSNSDTQTLLEDRLIVYNNLAMTQIKIAAYDAALQSVEHVLRCQPNNSKALYRK 293
Cdd:COG4785   34 VLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNR 113

                         90       100
                 ....*....|....*....|....*..
gi 665401939 294 GRILEGKADTQGAIKLLQKVATLEPEN 320
Cdd:COG4785  114 GLAYLLLGDYDAALEDFDRALELDPDY 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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