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Conserved domains on  [gi|631226377|ref|NP_001278815|]
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apolipoprotein C-I isoform 1 precursor [Danio rerio]

Protein Classification

ApoC-I domain-containing protein( domain architecture ID 10520084)

ApoC-I domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ApoC-I pfam04691
Apolipoprotein C-I (ApoC-1); Apolipoprotein C-I (ApoC-1) is a water-soluble protein component ...
 24-84 4.51e-23

Apolipoprotein C-I (ApoC-1); Apolipoprotein C-I (ApoC-1) is a water-soluble protein component of plasma lipoprotein. It solubalises lipids and regulates lipid metabolism. ApoC-1 transfers among HDL (high density lipoprotein), VLDL (very low-density lipoprotein) and chylomicrons. ApoC-1 activates lecithin:choline acetyltransferase (LCAT), inhibits cholesteryl ester transfer protein, can inhibit hepatic lipase and phospholipase 2 and can stimulate cell growth. ApoC-1 delays the clearance of beta-VLDL by inhibiting its uptake via the LDL receptor-related pathway. ApoC-1 has been implicated in hypertriglyceridemia, and Alzheimer's disease.


:

Pssm-ID: 428068  Cd Length: 61  Bit Score: 83.30  E-value: 4.51e-23
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 631226377  24 EPTLEQHFTKFGTQMKEIAEDLADKTKTAFQNIEQSELGTKTRNWFNDQYEKLKQKMTETF 84
Cdd:pfam04691  1 APDVSSAFERFPDKLKEFGNTLEDKARAAIEHIKQSELPAKTRNWFSETFEKVKEKLKITF 61
 
Name Accession Description Interval E-value
ApoC-I pfam04691
Apolipoprotein C-I (ApoC-1); Apolipoprotein C-I (ApoC-1) is a water-soluble protein component ...
 24-84 4.51e-23

Apolipoprotein C-I (ApoC-1); Apolipoprotein C-I (ApoC-1) is a water-soluble protein component of plasma lipoprotein. It solubalises lipids and regulates lipid metabolism. ApoC-1 transfers among HDL (high density lipoprotein), VLDL (very low-density lipoprotein) and chylomicrons. ApoC-1 activates lecithin:choline acetyltransferase (LCAT), inhibits cholesteryl ester transfer protein, can inhibit hepatic lipase and phospholipase 2 and can stimulate cell growth. ApoC-1 delays the clearance of beta-VLDL by inhibiting its uptake via the LDL receptor-related pathway. ApoC-1 has been implicated in hypertriglyceridemia, and Alzheimer's disease.


Pssm-ID: 428068  Cd Length: 61  Bit Score: 83.30  E-value: 4.51e-23
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 631226377  24 EPTLEQHFTKFGTQMKEIAEDLADKTKTAFQNIEQSELGTKTRNWFNDQYEKLKQKMTETF 84
Cdd:pfam04691  1 APDVSSAFERFPDKLKEFGNTLEDKARAAIEHIKQSELPAKTRNWFSETFEKVKEKLKITF 61
 
Name Accession Description Interval E-value
ApoC-I pfam04691
Apolipoprotein C-I (ApoC-1); Apolipoprotein C-I (ApoC-1) is a water-soluble protein component ...
 24-84 4.51e-23

Apolipoprotein C-I (ApoC-1); Apolipoprotein C-I (ApoC-1) is a water-soluble protein component of plasma lipoprotein. It solubalises lipids and regulates lipid metabolism. ApoC-1 transfers among HDL (high density lipoprotein), VLDL (very low-density lipoprotein) and chylomicrons. ApoC-1 activates lecithin:choline acetyltransferase (LCAT), inhibits cholesteryl ester transfer protein, can inhibit hepatic lipase and phospholipase 2 and can stimulate cell growth. ApoC-1 delays the clearance of beta-VLDL by inhibiting its uptake via the LDL receptor-related pathway. ApoC-1 has been implicated in hypertriglyceridemia, and Alzheimer's disease.


Pssm-ID: 428068  Cd Length: 61  Bit Score: 83.30  E-value: 4.51e-23
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 631226377  24 EPTLEQHFTKFGTQMKEIAEDLADKTKTAFQNIEQSELGTKTRNWFNDQYEKLKQKMTETF 84
Cdd:pfam04691  1 APDVSSAFERFPDKLKEFGNTLEDKARAAIEHIKQSELPAKTRNWFSETFEKVKEKLKITF 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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