|
Name |
Accession |
Description |
Interval |
E-value |
| MAGE |
pfam01454 |
MAGE homology domain; The MAGE (melanoma antigen-encoding gene) family are expressed in a wide ... |
596-756 |
1.12e-23 |
|
MAGE homology domain; The MAGE (melanoma antigen-encoding gene) family are expressed in a wide variety of tumours but not in normal cells, with the exception of the male germ cells, placenta, and, possibly, cells of the developing embryo. The cellular function of this family is unknown. This family also contains the yeast protein, Nse3. The Nse3 protein is part of the Smc5-6 complex. Nse3 has been demonstrated to be important for meiosis.
Pssm-ID: 426270 Cd Length: 205 Bit Score: 99.65 E-value: 1.12e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 596 LVKYLLVKDQTKIPIKRSDMLKDVIQEYE-DYFPEIIERASYALEKMFRVNLKEID--------------------KQNN 654
Cdd:pfam01454 1 LVRYALACEYQRTPIRREDISKKVLGENRkRLFKKVFEEAQKILRDVFGMELVELPakeekkttvtsqqrraaaksSRSK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 655 LYILIST---QESSAGIMGTTK---------DTPKLGLLMVILSVIFMNGNKASEAVIWEVLRKLGLH---PGVKHSLFG 719
Cdd:pfam01454 81 SYILVSTlppEYRVPAIIWPSKapsfvldqdEATYTGILTVILSLILLSGGSISEQELLRYLRRLGIDtdgTKEIPPLNG 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 595582214 720 EVKKLItDEFVKQKYLEYKRVPNSRP--PEYEFFWGLRS 756
Cdd:pfam01454 161 NTDDLL-KRLVKQGYLVRTKEGASDDgeEIIEYRVGPRA 198
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
272-490 |
8.71e-06 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 49.52 E-value: 8.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 272 SNRQIEASSRQ-TEASNRQTEASSRQTEASSRQTETSNRQIGASNRQIMASNRQIGASNRQIEASNRQIGASNRQTEVSS 350
Cdd:NF033609 33 SSKEADASENSvTQSDSASNESKSNDSSSVSAAPKTDDTNVSDTKTSSNTNNGETSVAQNPAQQETTQSASTNATTEETP 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 351 RQIEASNRQIGASNRQTEASNRQIGASNRQTEASNRQIGASNRQTDASNRQTDASNRQTEASSR--QTEASSRQTEASSR 428
Cdd:NF033609 113 VTGEATTTATNQANTPATTQSSNTNAEELVNQTSNETTSNDTNTVSSVNSPQNSTNAENVSTTQdtSTEATPSNNESAPQ 192
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 595582214 429 QTEASSRQIeaSAAAVRPKKPRgkkgnNKGSNSASEPSEAPPAIQTVTNHALSVTVRIRRGS 490
Cdd:NF033609 193 STDASNKDV--VNQAVNTSAPR-----MRAFSLAAVAADAPAAGTDITNQLTNVTVGIDSGT 247
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
264-442 |
1.98e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 264 ASGRQTEASNRQIEASSRQTEASNRQTEASSRQTEASSRQTETSNRQIGASNRQIMASNRQIGASNRQIEASNRQIGASN 343
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 344 RQTEvssRQIEASNRQIGASNRQTEASNRQIGASNRQTEASNRQIGASNRQTDASNRQTDA-SNRQTEASSRQTEASSRQ 422
Cdd:COG4942 97 AELE---AQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEElRADLAELAALRAELEAER 173
|
170 180
....*....|....*....|
gi 595582214 423 TEASSRQTEASSRQIEASAA 442
Cdd:COG4942 174 AELEALLAELEEERAALEAL 193
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
267-524 |
6.64e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 6.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 267 RQTEASNRQIEAssRQTEASNRQTEASSRQTEASSRQTETSNRQIGASNRQIMASNRQIGASNRQIE---------ASNR 337
Cdd:PTZ00121 1212 RKAEEARKAEDA--KKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEarkadelkkAEEK 1289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 338 QIGASNRQTEVSSRQIEASN-----RQIGASNRQTEASNRQIGASNRQTEASNRQIGASNRQTDASNRQTDASNRQTEAS 412
Cdd:PTZ00121 1290 KKADEAKKAEEKKKADEAKKkaeeaKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA 1369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 413 SRQTEASSRQTEASSRQTEASSRQIEASAAAVRPKKP----RGKKGNNKGSNSASEPSEAPPAIQTVTNHALSVtvriRR 488
Cdd:PTZ00121 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKadelKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA----KK 1445
|
250 260 270
....*....|....*....|....*....|....*.
gi 595582214 489 GSRARKAANKNRATESQAQIAEQGAQASEASISALE 524
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
|
|
| MscS_porin |
pfam12795 |
Mechanosensitive ion channel porin domain; The small mechanosensitive channel, MscS, is a part ... |
270-445 |
1.58e-04 |
|
Mechanosensitive ion channel porin domain; The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this MscS_porin is towards the N-terminal of the molecules. The high concentration of negative charges at the extracellular entrance of the pore helps select the cations for efflux.
Pssm-ID: 432790 [Multi-domain] Cd Length: 238 Bit Score: 44.21 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 270 EASNRQIEASSRQTEASN-RQTEASSRQTEASSRQTETSNRQIGASNRQIMASNRQIGASNRQIEASNRQIGASNRQTEV 348
Cdd:pfam12795 4 ELEKAKLDEAAKKKLLQDlQQALSLLDKIDASKQRAAAYQKALDDAPAELRELRQELAALQAKAEAAPKEILASLSLEEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 349 SSRQIEASNRQIGASNRQTEASNRQIGASNRQTEASNRQIGASNRQTDASNRQTDASNRQTEASsrQTEASSRQTEASSR 428
Cdd:pfam12795 84 EQRLLQTSAQLQELQNQLAQLNSQLIELQTRPERAQQQLSEARQRLQQIRNRLNGPAPPGEPLS--EAQRWALQAELAAL 161
|
170
....*....|....*..
gi 595582214 429 QTEASSRQIEASAAAVR 445
Cdd:pfam12795 162 KAQIDMLEQELLSNNNR 178
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
20-243 |
2.73e-04 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 44.52 E-value: 2.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 20 PAGSLGLPFSPDVQSETT---EKDPPIASRSKKNKNKKNSIKPMDKTTPAPPPVPSANDNASNKPKVTLQALNLPMFTQI 96
Cdd:pfam05109 442 PNTTTGLPSSTHVPTNLTapaSTGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNAT 521
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 97 SQASA-TTEAPNIQASVTSQTQKAKTMrVTPKVSLTGSEDATTQLKPPLQALNLPVTTPT--IQTPVANESANSLASTav 173
Cdd:pfam05109 522 SPTPAvTTPTPNATSPTLGKTSPTSAV-TTPTPNATSPTPAVTTPTPNATIPTLGKTSPTsaVTTPTPNATSPTVGET-- 598
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 174 nkSKKASTANNAANKTVPSAAEISLASAATHTVTTqGQAAKETGSIQTIAATARSKKNSKGKRTPAKTTN 243
Cdd:pfam05109 599 --SPQANTTNHTLGGTSSTPVVTSPPKNATSAVTT-GQHNITSSSTSSMSLRPSSISETLSPSTSDNSTS 665
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
199-412 |
7.15e-04 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 43.36 E-value: 7.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 199 ASAATHTVTTQGQAAKETGSIQTIAATARSKKNSKGKRTPAKTTNTDN-EYVEASNAIEASSRQIGASGRQTEASNRQIE 277
Cdd:NF033609 37 ADASENSVTQSDSASNESKSNDSSSVSAAPKTDDTNVSDTKTSSNTNNgETSVAQNPAQQETTQSASTNATTEETPVTGE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 278 ASSRQTEASNRQTEASSRQTEASSRQTETSNRQIGASNRQIMASNRQIGASNRQIEASnrqigasnrqTEVSSRQIEASN 357
Cdd:NF033609 117 ATTTATNQANTPATTQSSNTNAEELVNQTSNETTSNDTNTVSSVNSPQNSTNAENVST----------TQDTSTEATPSN 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 595582214 358 RQigASNRQTEASNRQIGASNRQTEASN-RQIGASNRQTDASNRQTDASNRQTEAS 412
Cdd:NF033609 187 NE--SAPQSTDASNKDVVNQAVNTSAPRmRAFSLAAVAADAPAAGTDITNQLTNVT 240
|
|
| PHA03255 |
PHA03255 |
BDLF3; Provisional |
157-304 |
5.36e-03 |
|
BDLF3; Provisional
Pssm-ID: 165513 [Multi-domain] Cd Length: 234 Bit Score: 39.50 E-value: 5.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 157 QTPVANESANSLASTAVNKSKKASTANNAANKTVPSAAEISLASAATHTVTTQGQAAKETGSIQTIAATARSKKNSKGKR 236
Cdd:PHA03255 19 ETSLIWTSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVTSTGTTVTPVPTTSNAS 98
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 595582214 237 TPAKTTNTDNEYVEASNAieASSRQIGASGRQTEASNRQIEASSRQTEASNRQTEASSRQTEASSRQT 304
Cdd:PHA03255 99 TINVTTKVTAQNITATEA--GTGTSTGVTSNVTTRSSSTTSATTRITNATTLAPTLSSKGTSNATKTT 164
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
249-525 |
7.55e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 7.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 249 VEASNAIEASSRQIGASGRQTEASNRQIEASSRQTEASNRQTEASSRQTEASSRQTETSNRQIGASNRQIMASNRQIGAS 328
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 329 NRQIEASNRQIGASNRQTEVSSRQIEASNRQIGASNRQTEASNRQIGASNRQTEASNRQIGASNRQTDASNRqtdasnRQ 408
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE------EA 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 409 TEASSRQtEASSRQTEASSRQTEASSRQIEASAAAVrpkkprgkKGNNKGSNSASEP-SEAPPAIQTVTNHALSVTVRIR 487
Cdd:TIGR02168 820 ANLRERL-ESLERRIAATERRLEDLEEQIEELSEDI--------ESLAAEIEELEELiEELESELEALLNERASLEEALA 890
|
250 260 270
....*....|....*....|....*....|....*....
gi 595582214 488 RG-SRARKAANKNRATESQAQIAEQGAQASEASISALET 525
Cdd:TIGR02168 891 LLrSELEELSEELRELESKRSELRRELEELREKLAQLEL 929
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| MAGE |
pfam01454 |
MAGE homology domain; The MAGE (melanoma antigen-encoding gene) family are expressed in a wide ... |
596-756 |
1.12e-23 |
|
MAGE homology domain; The MAGE (melanoma antigen-encoding gene) family are expressed in a wide variety of tumours but not in normal cells, with the exception of the male germ cells, placenta, and, possibly, cells of the developing embryo. The cellular function of this family is unknown. This family also contains the yeast protein, Nse3. The Nse3 protein is part of the Smc5-6 complex. Nse3 has been demonstrated to be important for meiosis.
Pssm-ID: 426270 Cd Length: 205 Bit Score: 99.65 E-value: 1.12e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 596 LVKYLLVKDQTKIPIKRSDMLKDVIQEYE-DYFPEIIERASYALEKMFRVNLKEID--------------------KQNN 654
Cdd:pfam01454 1 LVRYALACEYQRTPIRREDISKKVLGENRkRLFKKVFEEAQKILRDVFGMELVELPakeekkttvtsqqrraaaksSRSK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 655 LYILIST---QESSAGIMGTTK---------DTPKLGLLMVILSVIFMNGNKASEAVIWEVLRKLGLH---PGVKHSLFG 719
Cdd:pfam01454 81 SYILVSTlppEYRVPAIIWPSKapsfvldqdEATYTGILTVILSLILLSGGSISEQELLRYLRRLGIDtdgTKEIPPLNG 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 595582214 720 EVKKLItDEFVKQKYLEYKRVPNSRP--PEYEFFWGLRS 756
Cdd:pfam01454 161 NTDDLL-KRLVKQGYLVRTKEGASDDgeEIIEYRVGPRA 198
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
272-490 |
8.71e-06 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 49.52 E-value: 8.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 272 SNRQIEASSRQ-TEASNRQTEASSRQTEASSRQTETSNRQIGASNRQIMASNRQIGASNRQIEASNRQIGASNRQTEVSS 350
Cdd:NF033609 33 SSKEADASENSvTQSDSASNESKSNDSSSVSAAPKTDDTNVSDTKTSSNTNNGETSVAQNPAQQETTQSASTNATTEETP 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 351 RQIEASNRQIGASNRQTEASNRQIGASNRQTEASNRQIGASNRQTDASNRQTDASNRQTEASSR--QTEASSRQTEASSR 428
Cdd:NF033609 113 VTGEATTTATNQANTPATTQSSNTNAEELVNQTSNETTSNDTNTVSSVNSPQNSTNAENVSTTQdtSTEATPSNNESAPQ 192
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 595582214 429 QTEASSRQIeaSAAAVRPKKPRgkkgnNKGSNSASEPSEAPPAIQTVTNHALSVTVRIRRGS 490
Cdd:NF033609 193 STDASNKDV--VNQAVNTSAPR-----MRAFSLAAVAADAPAAGTDITNQLTNVTVGIDSGT 247
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
264-442 |
1.98e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 264 ASGRQTEASNRQIEASSRQTEASNRQTEASSRQTEASSRQTETSNRQIGASNRQIMASNRQIGASNRQIEASNRQIGASN 343
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 344 RQTEvssRQIEASNRQIGASNRQTEASNRQIGASNRQTEASNRQIGASNRQTDASNRQTDA-SNRQTEASSRQTEASSRQ 422
Cdd:COG4942 97 AELE---AQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEElRADLAELAALRAELEAER 173
|
170 180
....*....|....*....|
gi 595582214 423 TEASSRQTEASSRQIEASAA 442
Cdd:COG4942 174 AELEALLAELEEERAALEAL 193
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
268-524 |
5.61e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 5.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 268 QTEASNRQIEASSRQTEASNRQTEASSRQTEASSRQTETSNRQIGASNRQIMASNRQIGASNRQIEAsnrqigASNRQTE 347
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEE------AQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 348 VSSRQIEASNRQIGASNRQTEASNRQIGASNRQTEASNRQIGASNRQTDASNRQTDASNRQTEASSRQTEASSRQTEASS 427
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 428 RQTEASSRQIEASAAAVRPKKprgkkgnnkgsnsasepsEAPPAIQTVTNHALSVTVRIRRGSRARKAANKNRATESQAQ 507
Cdd:COG1196 373 ELAEAEEELEELAEELLEALR------------------AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
|
250
....*....|....*..
gi 595582214 508 IAEQGAQASEASISALE 524
Cdd:COG1196 435 EEEEEEEEALEEAAEEE 451
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
267-524 |
6.64e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 6.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 267 RQTEASNRQIEAssRQTEASNRQTEASSRQTEASSRQTETSNRQIGASNRQIMASNRQIGASNRQIE---------ASNR 337
Cdd:PTZ00121 1212 RKAEEARKAEDA--KKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEarkadelkkAEEK 1289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 338 QIGASNRQTEVSSRQIEASN-----RQIGASNRQTEASNRQIGASNRQTEASNRQIGASNRQTDASNRQTDASNRQTEAS 412
Cdd:PTZ00121 1290 KKADEAKKAEEKKKADEAKKkaeeaKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA 1369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 413 SRQTEASSRQTEASSRQTEASSRQIEASAAAVRPKKP----RGKKGNNKGSNSASEPSEAPPAIQTVTNHALSVtvriRR 488
Cdd:PTZ00121 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKadelKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA----KK 1445
|
250 260 270
....*....|....*....|....*....|....*.
gi 595582214 489 GSRARKAANKNRATESQAQIAEQGAQASEASISALE 524
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
251-459 |
7.20e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 7.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 251 ASNAIEASSRQIGASGRQTEASNRQIEASSRQTEASNRQTEASSRQTEASSRQTETSNRQIGASNRQIMASNRQIGASNR 330
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 331 QIEASNRQIGASNRQTEVSSRQ-------------------------IEASNRQIGASNRQTE---ASNRQIGASNRQTE 382
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQpplalllspedfldavrrlqylkylAPARREQAEELRADLAelaALRAELEAERAELE 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 595582214 383 ASNRQIGASNRQTDASNRQTDASNRQTEASSRQTEASSRQTEASSRQTEASSRQIEASAAAVRPKKPRGKKGNNKGS 459
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| PHA00430 |
PHA00430 |
tail fiber protein |
325-467 |
1.38e-04 |
|
tail fiber protein
Pssm-ID: 222790 [Multi-domain] Cd Length: 568 Bit Score: 45.27 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 325 IGASNR-QIEASNRQI----GASNRQTEVSSRQIEASNRQigASNRQTEASNRQIGAS--NRQTEASNRQIGASNRQTDA 397
Cdd:PHA00430 121 IGVNNDgHLDARGRRIvnlaDAVDDGDAVPLGQIKTWNQS--AWNARNEANRSRNEADraRNQAERFNNESGASATNTKQ 198
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 595582214 398 SNRQTDASNRQTE-----ASSRQTEASSRQTEASSRQTEASSRQIEASAAAVRPKKPRGKKGNNKGSNSASEPSE 467
Cdd:PHA00430 199 WRSEADGSNSEANrfkgyADSMTSSVEAAKGQAESSSKEANTAGDYATKAAASASAAHASEVNAANSATAAATSA 273
|
|
| MscS_porin |
pfam12795 |
Mechanosensitive ion channel porin domain; The small mechanosensitive channel, MscS, is a part ... |
270-445 |
1.58e-04 |
|
Mechanosensitive ion channel porin domain; The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this MscS_porin is towards the N-terminal of the molecules. The high concentration of negative charges at the extracellular entrance of the pore helps select the cations for efflux.
Pssm-ID: 432790 [Multi-domain] Cd Length: 238 Bit Score: 44.21 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 270 EASNRQIEASSRQTEASN-RQTEASSRQTEASSRQTETSNRQIGASNRQIMASNRQIGASNRQIEASNRQIGASNRQTEV 348
Cdd:pfam12795 4 ELEKAKLDEAAKKKLLQDlQQALSLLDKIDASKQRAAAYQKALDDAPAELRELRQELAALQAKAEAAPKEILASLSLEEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 349 SSRQIEASNRQIGASNRQTEASNRQIGASNRQTEASNRQIGASNRQTDASNRQTDASNRQTEASsrQTEASSRQTEASSR 428
Cdd:pfam12795 84 EQRLLQTSAQLQELQNQLAQLNSQLIELQTRPERAQQQLSEARQRLQQIRNRLNGPAPPGEPLS--EAQRWALQAELAAL 161
|
170
....*....|....*..
gi 595582214 429 QTEASSRQIEASAAAVR 445
Cdd:pfam12795 162 KAQIDMLEQELLSNNNR 178
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
20-243 |
2.73e-04 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 44.52 E-value: 2.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 20 PAGSLGLPFSPDVQSETT---EKDPPIASRSKKNKNKKNSIKPMDKTTPAPPPVPSANDNASNKPKVTLQALNLPMFTQI 96
Cdd:pfam05109 442 PNTTTGLPSSTHVPTNLTapaSTGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNAT 521
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 97 SQASA-TTEAPNIQASVTSQTQKAKTMrVTPKVSLTGSEDATTQLKPPLQALNLPVTTPT--IQTPVANESANSLASTav 173
Cdd:pfam05109 522 SPTPAvTTPTPNATSPTLGKTSPTSAV-TTPTPNATSPTPAVTTPTPNATIPTLGKTSPTsaVTTPTPNATSPTVGET-- 598
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 174 nkSKKASTANNAANKTVPSAAEISLASAATHTVTTqGQAAKETGSIQTIAATARSKKNSKGKRTPAKTTN 243
Cdd:pfam05109 599 --SPQANTTNHTLGGTSSTPVVTSPPKNATSAVTT-GQHNITSSSTSSMSLRPSSISETLSPSTSDNSTS 665
|
|
| Tar |
COG0840 |
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms]; |
250-442 |
5.22e-04 |
|
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
Pssm-ID: 440602 [Multi-domain] Cd Length: 533 Bit Score: 43.47 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 250 EASNAIEASSRQIGASGRQTEASNRQIEASSRQTEASNRQTEASSRQTEASSRQTETSNRQIgasnRQIMASNRQIG--- 326
Cdd:COG0840 292 ETAAAMEELSATVQEVAENAQQAAELAEEASELAEEGGEVVEEAVEGIEEIRESVEETAETI----EELGESSQEIGeiv 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 327 -------------ASNRQIEAS------------------------------NRQIGASNRQTEVSSRQIEASNRQIGAS 363
Cdd:COG0840 368 dviddiaeqtnllALNAAIEAArageagrgfavvadevrklaersaeatkeiEELIEEIQSETEEAVEAMEEGSEEVEEG 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 364 NRQTEASN---RQIGASNRQTEASNRQIGASNRQTDASNRQTDASNRQTEASSRQTEASSRQTEASSRQTEASSRQIEAS 440
Cdd:COG0840 448 VELVEEAGealEEIVEAVEEVSDLIQEIAAASEEQSAGTEEVNQAIEQIAAAAQENAASVEEVAAAAEELAELAEELQEL 527
|
..
gi 595582214 441 AA 442
Cdd:COG0840 528 VS 529
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
268-522 |
6.00e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 6.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 268 QTEASNRQIEASSRQTEASNRQTEASSRQTEASSRQTETSNRQIGASNRQIMASNRQIGASNRQIEASNRQIGASNRQTE 347
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 348 VSSRQI-------EASN-----RQIGASNRQTEASNRQIGA-SNRQTEASNRQIGASNRQTDASNRQTDASNRQTEASSR 414
Cdd:COG3883 97 RSGGSVsyldvllGSESfsdflDRLSALSKIADADADLLEElKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 415 QTEASSRQTEASSRQTEASSRQIEASAAAVRPKKPRGKKGNNKGSNSASEPSEAPPAIQTVTNHALSVTVRIRRGSRARK 494
Cdd:COG3883 177 QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAG 256
|
250 260
....*....|....*....|....*...
gi 595582214 495 AANKNRATESQAQIAEQGAQASEASISA 522
Cdd:COG3883 257 AAAGSAGAAGAAAGAAGAGAAAASAAGG 284
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
199-412 |
7.15e-04 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 43.36 E-value: 7.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 199 ASAATHTVTTQGQAAKETGSIQTIAATARSKKNSKGKRTPAKTTNTDN-EYVEASNAIEASSRQIGASGRQTEASNRQIE 277
Cdd:NF033609 37 ADASENSVTQSDSASNESKSNDSSSVSAAPKTDDTNVSDTKTSSNTNNgETSVAQNPAQQETTQSASTNATTEETPVTGE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 278 ASSRQTEASNRQTEASSRQTEASSRQTETSNRQIGASNRQIMASNRQIGASNRQIEASnrqigasnrqTEVSSRQIEASN 357
Cdd:NF033609 117 ATTTATNQANTPATTQSSNTNAEELVNQTSNETTSNDTNTVSSVNSPQNSTNAENVST----------TQDTSTEATPSN 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 595582214 358 RQigASNRQTEASNRQIGASNRQTEASN-RQIGASNRQTDASNRQTDASNRQTEAS 412
Cdd:NF033609 187 NE--SAPQSTDASNKDVVNQAVNTSAPRmRAFSLAAVAADAPAAGTDITNQLTNVT 240
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
259-380 |
1.64e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.49 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 259 SRQIgaSGRQTE--ASNRQIEASSRQ---TEASNRQTEASSRQTEASSRQTETSNRQIGASN----RQIMASNRQIGASN 329
Cdd:PRK09039 45 SREI--SGKDSAldRLNSQIAELADLlslERQGNQDLQDSVANLRASLSAAEAERSRLQALLaelaGAGAAAEGRAGELA 122
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 595582214 330 RQIeASNRQIGA-SNRQTEVSSRQIEASNRQIGASNRQTEASNRQIGASNRQ 380
Cdd:PRK09039 123 QEL-DSEKQVSArALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAK 173
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
250-360 |
2.31e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.10 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 250 EASNAIEASSRQIGASGRQTEASNRQIEASsrQTEASNRQTEASSRQTEASsrQTETSNRQIGASnrqimaSNRQIGASN 329
Cdd:PRK09039 74 QGNQDLQDSVANLRASLSAAEAERSRLQAL--LAELAGAGAAAEGRAGELA--QELDSEKQVSAR------ALAQVELLN 143
|
90 100 110
....*....|....*....|....*....|.
gi 595582214 330 RQIEASNRQIGASNRQTEVSSRQIEASNRQI 360
Cdd:PRK09039 144 QQIAALRRQLAALEAALDASEKRDRESQAKI 174
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
229-524 |
3.10e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 229 KKNSKGKRTPAKTTNTDNEYVEASNAIEASSRQIGASGRQTEASNRQIEASSRQTEASNRQTEASSRQTEASSRQTETsn 308
Cdd:PTZ00121 1237 KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA-- 1314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 309 rqigasnrqimasnRQIGASNRQIEASNRQIGASNRQTEVSSRQIEASNRQIGASNRQTEASNRQIGASNRQTEASNRQI 388
Cdd:PTZ00121 1315 --------------KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA 1380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 389 GASNRQTDaSNRQTDASNRQTEASSRQTEASSRQTEASSRQTEASSRQIEASAAAVRPKKPRGKKGNNKGSNSASEPSEA 468
Cdd:PTZ00121 1381 DAAKKKAE-EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA 1459
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 595582214 469 PPAIqtvtnhalsvtvriRRGSRARKAANKNRATESQAQIAEQGAQASEASISALE 524
Cdd:PTZ00121 1460 EEAK--------------KKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
262-468 |
3.30e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.66 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 262 IGASGRQTEASNRQIEASSRQTEASNRQTEASSRQTEASSRQTETSNRQIGASNRQIMASNRQIGASNRQIEASNRQIGA 341
Cdd:COG4372 26 IAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELES 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 342 SNRQTEVSSRQIEASNRQIGASNRQTEASNRQIgasnrqteaSNRQIGASNRQTDASNRQTDASNRQTEASSRQTEASSR 421
Cdd:COG4372 106 LQEEAEELQEELEELQKERQDLEQQRKQLEAQI---------AELQSEIAEREEELKELEEQLESLQEELAALEQELQAL 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 595582214 422 QTEASSRQTEASSRQIEASAAAVRPKKPRGKKGNNKGSNSASEPSEA 468
Cdd:COG4372 177 SEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEA 223
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
319-404 |
3.67e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 319 MASNRQIGASNRQIEASNRQIGASNRQTEVSSRQIEASNRQIGASNRQTEASNRQIGASNRQTEASNRQIGASNRQTDAS 398
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
....*.
gi 595582214 399 NRQTDA 404
Cdd:COG4942 96 RAELEA 101
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
29-297 |
3.97e-03 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 40.71 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 29 SPDVQSETTekdppiaSRSKKNKNKKNSIKPMDKTTPAPPPVPSANDNASNKPKVTLQALNLPmftQISQASATTEAPNI 108
Cdd:pfam17823 83 STEVTAEHT-------PHGTDLSEPATREGAADGAASRALAAAASSSPSSAAQSLPAAIAALP---SEAFSAPRAAACRA 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 109 QASVTSQTQKAKTMRVTPKVSLTGSEDATTQLKPPLQALNLP-----VTTPTIQTPVanesaNSLASTAVNKSKKASTAN 183
Cdd:pfam17823 153 NASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSApttaaSSAPATLTPA-----RGISTAATATGHPAAGTA 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 184 NAANKTVPSAAEISLASAATHTVTTQGQAAKETGSIQTIAATARSKKNSKGKRTPAKTTNTDNeyveasnaieASSRQIG 263
Cdd:pfam17823 228 LAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRLSPAKHMPSDT----------MARNPAA 297
|
250 260 270
....*....|....*....|....*....|....
gi 595582214 264 ASGRQTEASNRQIEASSRQTEASNRQTEASSRQT 297
Cdd:pfam17823 298 PMGAQAQGPIIQVSTDQPVHNTAGEPTPSPSNTT 331
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
260-435 |
4.99e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 4.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 260 RQIGASGRQTEASNRQIEASSRQTEASNRQTEASSRQTEASSRQtetsnRQIGASNRQImasnRQIGASNRQIEASNRQI 339
Cdd:COG4913 624 EELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAE-----REIAELEAEL----ERLDASSDDLAALEEQL 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 340 GASNRQTEVSSRQIEASNRQIGASNRQTEASNRQIGASNRQTEASNrQIGASNRQTDASNRQTDASNRQTEASSRQtEAS 419
Cdd:COG4913 695 EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAE-DLARLELRALLEERFAAALGDAVERELRE-NLE 772
|
170
....*....|....*.
gi 595582214 420 SRQTEASSRQTEASSR 435
Cdd:COG4913 773 ERIDALRARLNRAEEE 788
|
|
| PHA03255 |
PHA03255 |
BDLF3; Provisional |
157-304 |
5.36e-03 |
|
BDLF3; Provisional
Pssm-ID: 165513 [Multi-domain] Cd Length: 234 Bit Score: 39.50 E-value: 5.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 157 QTPVANESANSLASTAVNKSKKASTANNAANKTVPSAAEISLASAATHTVTTQGQAAKETGSIQTIAATARSKKNSKGKR 236
Cdd:PHA03255 19 ETSLIWTSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVTSTGTTVTPVPTTSNAS 98
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 595582214 237 TPAKTTNTDNEYVEASNAieASSRQIGASGRQTEASNRQIEASSRQTEASNRQTEASSRQTEASSRQT 304
Cdd:PHA03255 99 TINVTTKVTAQNITATEA--GTGTSTGVTSNVTTRSSSTTSATTRITNATTLAPTLSSKGTSNATKTT 164
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
249-525 |
7.55e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 7.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 249 VEASNAIEASSRQIGASGRQTEASNRQIEASSRQTEASNRQTEASSRQTEASSRQTETSNRQIGASNRQIMASNRQIGAS 328
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 329 NRQIEASNRQIGASNRQTEVSSRQIEASNRQIGASNRQTEASNRQIGASNRQTEASNRQIGASNRQTDASNRqtdasnRQ 408
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE------EA 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 409 TEASSRQtEASSRQTEASSRQTEASSRQIEASAAAVrpkkprgkKGNNKGSNSASEP-SEAPPAIQTVTNHALSVTVRIR 487
Cdd:TIGR02168 820 ANLRERL-ESLERRIAATERRLEDLEEQIEELSEDI--------ESLAAEIEELEELiEELESELEALLNERASLEEALA 890
|
250 260 270
....*....|....*....|....*....|....*....
gi 595582214 488 RG-SRARKAANKNRATESQAQIAEQGAQASEASISALET 525
Cdd:TIGR02168 891 LLrSELEELSEELRELESKRSELRRELEELREKLAQLEL 929
|
|
| MscS_porin |
pfam12795 |
Mechanosensitive ion channel porin domain; The small mechanosensitive channel, MscS, is a part ... |
250-437 |
7.82e-03 |
|
Mechanosensitive ion channel porin domain; The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this MscS_porin is towards the N-terminal of the molecules. The high concentration of negative charges at the extracellular entrance of the pore helps select the cations for efflux.
Pssm-ID: 432790 [Multi-domain] Cd Length: 238 Bit Score: 38.82 E-value: 7.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 250 EASNAIEASSRQIGASGRQTEASNRQIEASSRQTEASNRQTEASSRQTEASSRQTETSNRQIGASNRQIMASNRQIGASN 329
Cdd:pfam12795 48 DAPAELRELRQELAALQAKAEAAPKEILASLSLEELEQRLLQTSAQLQELQNQLAQLNSQLIELQTRPERAQQQLSEARQ 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 330 RQIEASNRQIGASNRQTEVSSRQIEASNRQIGASNRQTEASNR-QIGASNRQTEASNRQIGASNRQTDASNRQTDASNRQ 408
Cdd:pfam12795 128 RLQQIRNRLNGPAPPGEPLSEAQRWALQAELAALKAQIDMLEQeLLSNNNRQDLLKARRDLLTLRIQRLEQQLQALQELL 207
|
170 180
....*....|....*....|....*....
gi 595582214 409 TEASSRQTEASSRQTEASSRQTEASSRQI 437
Cdd:pfam12795 208 NEKRLQEAEQAVAQTEQLAEEAAGDHPLV 236
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
323-448 |
9.02e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 39.67 E-value: 9.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595582214 323 RQIGASNRQIEASNRQIGASNRQTEVSSRQIEASNRQIGASNRQTEASNRQIgasNRQTEASNRQIGASNRQTDASNRQT 402
Cdd:TIGR02169 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKI---KDLGEEEQLRVKEKIGELEAEIASL 306
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 595582214 403 DASNRQTEASSRQTEASSRQTEASSRQTEASSRQIEASAAAVRPKK 448
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR 352
|
|
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