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Conserved domains on  [gi|540344548|ref|NP_001269385|]
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protein GVQW3 isoform a [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_48 pfam17906
HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase ...
 9-53 7.68e-08

HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase comprises two HTH domains. This HTH domain binds in the DNA major groove to the transposons inverted repeats.


:

Pssm-ID: 465558 [Multi-domain]  Cd Length: 50  Bit Score: 47.90  E-value: 7.68e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 540344548    9 RISIKFCVKLNKSASETHHLLKEAYGDEVMSRARVFDWHKRFKEG 53
Cdd:pfam17906   5 RHCILYEFLQGKSAAEAYRNICEVYGEDAVSERTFQRWFARFRSG 49
HTH_32 pfam13565
Homeodomain-like domain;
43-108 5.06e-05

Homeodomain-like domain;


:

Pssm-ID: 463923 [Multi-domain]  Cd Length: 73  Bit Score: 40.36  E-value: 5.06e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 540344548   43 VFDWHKRFKE-GREDVRDDARSGRPvtHRTDDN-IQKVKDLVCSNRQLTVRMMAEELNLD------KETVRLIL 108
Cdd:pfam13565   2 VYRWRKRYNEeGLEGLEDRPRRGRP--RKLTDEqEARLLALLCEEPRWSPRLLAERLEEEfgvkvsRSTVRRIL 73
 
Name Accession Description Interval E-value
HTH_48 pfam17906
HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase ...
 9-53 7.68e-08

HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase comprises two HTH domains. This HTH domain binds in the DNA major groove to the transposons inverted repeats.


Pssm-ID: 465558 [Multi-domain]  Cd Length: 50  Bit Score: 47.90  E-value: 7.68e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 540344548    9 RISIKFCVKLNKSASETHHLLKEAYGDEVMSRARVFDWHKRFKEG 53
Cdd:pfam17906   5 RHCILYEFLQGKSAAEAYRNICEVYGEDAVSERTFQRWFARFRSG 49
HTH_32 pfam13565
Homeodomain-like domain;
43-108 5.06e-05

Homeodomain-like domain;


Pssm-ID: 463923 [Multi-domain]  Cd Length: 73  Bit Score: 40.36  E-value: 5.06e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 540344548   43 VFDWHKRFKE-GREDVRDDARSGRPvtHRTDDN-IQKVKDLVCSNRQLTVRMMAEELNLD------KETVRLIL 108
Cdd:pfam13565   2 VYRWRKRYNEeGLEGLEDRPRRGRP--RKLTDEqEARLLALLCEEPRWSPRLLAERLEEEfgvkvsRSTVRRIL 73
 
Name Accession Description Interval E-value
HTH_48 pfam17906
HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase ...
 9-53 7.68e-08

HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase comprises two HTH domains. This HTH domain binds in the DNA major groove to the transposons inverted repeats.


Pssm-ID: 465558 [Multi-domain]  Cd Length: 50  Bit Score: 47.90  E-value: 7.68e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 540344548    9 RISIKFCVKLNKSASETHHLLKEAYGDEVMSRARVFDWHKRFKEG 53
Cdd:pfam17906   5 RHCILYEFLQGKSAAEAYRNICEVYGEDAVSERTFQRWFARFRSG 49
HTH_32 pfam13565
Homeodomain-like domain;
43-108 5.06e-05

Homeodomain-like domain;


Pssm-ID: 463923 [Multi-domain]  Cd Length: 73  Bit Score: 40.36  E-value: 5.06e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 540344548   43 VFDWHKRFKE-GREDVRDDARSGRPvtHRTDDN-IQKVKDLVCSNRQLTVRMMAEELNLD------KETVRLIL 108
Cdd:pfam13565   2 VYRWRKRYNEeGLEGLEDRPRRGRP--RKLTDEqEARLLALLCEEPRWSPRLLAERLEEEfgvkvsRSTVRRIL 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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