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Conserved domains on  [gi|526118169|ref|NP_001267721|]
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surfeit locus protein 4 isoform 5 [Homo sapiens]

Protein Classification

DoxX family protein( domain architecture ID 229470)

DoxX family protein similar to Saccharomyces cerevisiae ER-derived vesicles protein ERV29, a constituent of COPII-coated endoplasmic reticulum-derived transport vesicles

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DoxX super family cl21527
DoxX; These proteins appear to have some sequence similarity with pfam04173 but their function ...
 4-119 8.35e-57

DoxX; These proteins appear to have some sequence similarity with pfam04173 but their function is unknown.


The actual alignment was detected with superfamily member pfam02077:

Pssm-ID: 451291  Cd Length: 267  Bit Score: 177.20  E-value: 8.35e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526118169    4 NDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWNCGYLLASSFVFLNLLGQLTGCVL 83
Cdd:pfam02077   1 NEVAARAEDYAETFARKTKPYLPTLARLCLVATFFEDGIRMLFQWSDQVNYMDYSWGCGYFFATVFVIVNLVGQLIGSLL 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 526118169   84 VLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMR 119
Cdd:pfam02077  81 VMLRKKVTYACGVLFFIVILQTIAYGLLTDLKFLLR 116
 
Name Accession Description Interval E-value
SURF4 pfam02077
SURF4 family;
4-119 8.35e-57

SURF4 family;


Pssm-ID: 111019  Cd Length: 267  Bit Score: 177.20  E-value: 8.35e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526118169    4 NDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWNCGYLLASSFVFLNLLGQLTGCVL 83
Cdd:pfam02077   1 NEVAARAEDYAETFARKTKPYLPTLARLCLVATFFEDGIRMLFQWSDQVNYMDYSWGCGYFFATVFVIVNLVGQLIGSLL 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 526118169   84 VLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMR 119
Cdd:pfam02077  81 VMLRKKVTYACGVLFFIVILQTIAYGLLTDLKFLLR 116
 
Name Accession Description Interval E-value
SURF4 pfam02077
SURF4 family;
4-119 8.35e-57

SURF4 family;


Pssm-ID: 111019  Cd Length: 267  Bit Score: 177.20  E-value: 8.35e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526118169    4 NDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWNCGYLLASSFVFLNLLGQLTGCVL 83
Cdd:pfam02077   1 NEVAARAEDYAETFARKTKPYLPTLARLCLVATFFEDGIRMLFQWSDQVNYMDYSWGCGYFFATVFVIVNLVGQLIGSLL 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 526118169   84 VLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMR 119
Cdd:pfam02077  81 VMLRKKVTYACGVLFFIVILQTIAYGLLTDLKFLLR 116
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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