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Conserved domains on  [gi|1939401958|ref|NP_001264139|]
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small integral membrane protein 15 isoform 2 [Rattus norvegicus]

Protein Classification

small integral membrane protein 15( domain architecture ID 10633414)

small integral membrane protein 15 (SMIM15)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UPF0542 pfam15086
Uncharacterized protein family UPF0542; This family of proteins is functionally ...
 5-69 1.54e-20

Uncharacterized protein family UPF0542; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. There is a conserved LSWKL sequence motif. This family includes human protein C5orf43.


:

Pssm-ID: 405727  Cd Length: 67  Bit Score: 76.42  E-value: 1.54e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1939401958  5 KAWAEYVVEWAAKDPYGFLTTVILALTPLFLASAVLSWKLAKMIEAREKEQKKKQKRQENISKYR 69
Cdd:pfam15086  1 KDWLSYVVLWAAKDPGEFLTTVLLCLTPFFLLSAVLSWKLAKALEAEEKRQKLKAKRTANIAKTR 65
 
Name Accession Description Interval E-value
UPF0542 pfam15086
Uncharacterized protein family UPF0542; This family of proteins is functionally ...
 5-69 1.54e-20

Uncharacterized protein family UPF0542; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. There is a conserved LSWKL sequence motif. This family includes human protein C5orf43.


Pssm-ID: 405727  Cd Length: 67  Bit Score: 76.42  E-value: 1.54e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1939401958  5 KAWAEYVVEWAAKDPYGFLTTVILALTPLFLASAVLSWKLAKMIEAREKEQKKKQKRQENISKYR 69
Cdd:pfam15086  1 KDWLSYVVLWAAKDPGEFLTTVLLCLTPFFLLSAVLSWKLAKALEAEEKRQKLKAKRTANIAKTR 65
 
Name Accession Description Interval E-value
UPF0542 pfam15086
Uncharacterized protein family UPF0542; This family of proteins is functionally ...
 5-69 1.54e-20

Uncharacterized protein family UPF0542; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. There is a conserved LSWKL sequence motif. This family includes human protein C5orf43.


Pssm-ID: 405727  Cd Length: 67  Bit Score: 76.42  E-value: 1.54e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1939401958  5 KAWAEYVVEWAAKDPYGFLTTVILALTPLFLASAVLSWKLAKMIEAREKEQKKKQKRQENISKYR 69
Cdd:pfam15086  1 KDWLSYVVLWAAKDPGEFLTTVLLCLTPFFLLSAVLSWKLAKALEAEEKRQKLKAKRTANIAKTR 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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