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Conserved domains on  [gi|451770396|ref|NP_001263412|]
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small integral membrane protein 12 [Rattus norvegicus]

Protein Classification

small integral membrane protein 12( domain architecture ID 11240115)

small integral membrane protein 12 (SMIM12)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UPF0767 pfam15990
UPF0767 family; This family of proteins is functionally uncharacterized. This family of ...
 1-87 1.34e-43

UPF0767 family; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between and 92 amino acids in length. There are two conserved sequence motifs: IGYN and SPSL.


:

Pssm-ID: 464960  Cd Length: 83  Bit Score: 135.97  E-value: 1.34e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451770396   1 MWPVLWTVVRTYAPYVTFPVAFVVGAVGYHLEWFIRGKDPQPveeEKSILERREDRKLDEMLGKDHTQVVSLKDKlEFAP 80
Cdd:pfam15990  1 MWPVLLAFLRTYAPYITLPVAAVVGAIGYNLESLISDKYTPY---EKSISEKREERLLQELLGKDVTQVESLKEK-EFVP 76


                 ....*..
gi 451770396  81 KAVLNRN 87
Cdd:pfam15990 77 KAVLERN 83
 
Name Accession Description Interval E-value
UPF0767 pfam15990
UPF0767 family; This family of proteins is functionally uncharacterized. This family of ...
 1-87 1.34e-43

UPF0767 family; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between and 92 amino acids in length. There are two conserved sequence motifs: IGYN and SPSL.


Pssm-ID: 464960  Cd Length: 83  Bit Score: 135.97  E-value: 1.34e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451770396   1 MWPVLWTVVRTYAPYVTFPVAFVVGAVGYHLEWFIRGKDPQPveeEKSILERREDRKLDEMLGKDHTQVVSLKDKlEFAP 80
Cdd:pfam15990  1 MWPVLLAFLRTYAPYITLPVAAVVGAIGYNLESLISDKYTPY---EKSISEKREERLLQELLGKDVTQVESLKEK-EFVP 76


                 ....*..
gi 451770396  81 KAVLNRN 87
Cdd:pfam15990 77 KAVLERN 83
 
Name Accession Description Interval E-value
UPF0767 pfam15990
UPF0767 family; This family of proteins is functionally uncharacterized. This family of ...
 1-87 1.34e-43

UPF0767 family; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between and 92 amino acids in length. There are two conserved sequence motifs: IGYN and SPSL.


Pssm-ID: 464960  Cd Length: 83  Bit Score: 135.97  E-value: 1.34e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451770396   1 MWPVLWTVVRTYAPYVTFPVAFVVGAVGYHLEWFIRGKDPQPveeEKSILERREDRKLDEMLGKDHTQVVSLKDKlEFAP 80
Cdd:pfam15990  1 MWPVLLAFLRTYAPYITLPVAAVVGAIGYNLESLISDKYTPY---EKSISEKREERLLQELLGKDVTQVESLKEK-EFVP 76


                 ....*..
gi 451770396  81 KAVLNRN 87
Cdd:pfam15990 77 KAVLERN 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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