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Conserved domains on  [gi|442621864|ref|NP_001263104|]
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ferritin 1 heavy chain homologue, isoform I [Drosophila melanogaster]

Protein Classification

ferritin family protein( domain architecture ID 10099405)

ferritin family protein such as ferritin, the primary iron storage protein of most living organisms that belongs to a broad superfamily of ferritin-like diiron-carboxylate proteins

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Euk_Ferritin cd01056
eukaryotic ferritins; Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary ...
79-243 1.45e-63

eukaryotic ferritins; Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged residues on the protein shell inner surface of the L subunits promote ferrihydrite nucleation. Most plant ferritins combine both oxidase and nucleation functions in one chain: they have four interior glutamate residues as well as seven ferroxidase center residues.


:

Pssm-ID: 153114  Cd Length: 161  Bit Score: 195.45  E-value: 1.45e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442621864  79 DACIKGMRNQIQEEINASYQYLAMGAYFSRDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSMRGqlteGVSDLINVPTVA 158
Cdd:cd01056    2 EECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRG----GRVVLQDIKKPE 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442621864 159 KQEWTDGAAALSDALDLEIKVTKSIRKLIQTCENKpyNHYHLVDYLTGVYLEEQLHGQRELAGKLTTLKKMMDTNGELGE 238
Cdd:cd01056   78 KDEWGSGLEALELALDLEKLVNQSLLDLHKLASEH--NDPHLADFLESEFLEEQVESIKKLAGYITNLKRVGKPQSGLGE 155

                 ....*
gi 442621864 239 FLFDK 243
Cdd:cd01056  156 YLFDK 160
 
Name Accession Description Interval E-value
Euk_Ferritin cd01056
eukaryotic ferritins; Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary ...
79-243 1.45e-63

eukaryotic ferritins; Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged residues on the protein shell inner surface of the L subunits promote ferrihydrite nucleation. Most plant ferritins combine both oxidase and nucleation functions in one chain: they have four interior glutamate residues as well as seven ferroxidase center residues.


Pssm-ID: 153114  Cd Length: 161  Bit Score: 195.45  E-value: 1.45e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442621864  79 DACIKGMRNQIQEEINASYQYLAMGAYFSRDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSMRGqlteGVSDLINVPTVA 158
Cdd:cd01056    2 EECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRG----GRVVLQDIKKPE 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442621864 159 KQEWTDGAAALSDALDLEIKVTKSIRKLIQTCENKpyNHYHLVDYLTGVYLEEQLHGQRELAGKLTTLKKMMDTNGELGE 238
Cdd:cd01056   78 KDEWGSGLEALELALDLEKLVNQSLLDLHKLASEH--NDPHLADFLESEFLEEQVESIKKLAGYITNLKRVGKPQSGLGE 155

                 ....*
gi 442621864 239 FLFDK 243
Cdd:cd01056  156 YLFDK 160
Ferritin pfam00210
Ferritin-like domain; This family contains ferritins and other ferritin-like proteins such as ...
82-228 3.49e-23

Ferritin-like domain; This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.


Pssm-ID: 459712  Cd Length: 141  Bit Score: 91.19  E-value: 3.49e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442621864   82 IKGMRNQIQEEINASYQYLAMGAYFsrDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSMRGQLTegVSDLINVPTVAK-Q 160
Cdd:pfam00210   1 IAALNEQLADELTASYQYLQMHWYV--KGPGFEGLHEFFDEQAEEEREHADKLAERILDLGGTP--NGTRVELLAIEApP 76
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442621864  161 EWTDGAAALSDALDLEIKVTKSIRKLIQTCENKpyNHYHLVDYLTGvYLEEQLHGQRELAGKLTTLKK 228
Cdd:pfam00210  77 SFGSVLEVLEAALEHEKKVTKSLRELIELAEEE--GDYATADFLQW-FLDEQEEHEWFLEALLEKLER 141
FtnA COG1528
Ferritin [Inorganic ion transport and metabolism];
87-245 1.65e-20

Ferritin [Inorganic ion transport and metabolism];


Pssm-ID: 441137  Cd Length: 158  Bit Score: 84.80  E-value: 1.65e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442621864  87 NQIQEEINASYQYLAMGAYFsrDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSMRGQLTEgvsdlinVPTVA--KQEWTD 164
Cdd:COG1528   12 EQINLEFYSSYLYLAMAAWC--DEKGLPGFANFFRVQAQEERTHAMKFFDYLNDRGGRVE-------LPAIDapPNEFES 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442621864 165 GAAALSDALDLEIKVTKSIRKLIQTC-ENKpynhyhlvDYLTGV----YLEEQlHGQRELAGKLTTLKKMMDTNGElGEF 239
Cdd:COG1528   83 LLEVFEAALEHEQKVTKSINELVDLArEEK--------DYATENflqwFVKEQ-VEEEALARTILDKLKLAGDDGS-GLF 152

                 ....*.
gi 442621864 240 LFDKTL 245
Cdd:COG1528  153 MLDKEL 158
 
Name Accession Description Interval E-value
Euk_Ferritin cd01056
eukaryotic ferritins; Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary ...
79-243 1.45e-63

eukaryotic ferritins; Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged residues on the protein shell inner surface of the L subunits promote ferrihydrite nucleation. Most plant ferritins combine both oxidase and nucleation functions in one chain: they have four interior glutamate residues as well as seven ferroxidase center residues.


Pssm-ID: 153114  Cd Length: 161  Bit Score: 195.45  E-value: 1.45e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442621864  79 DACIKGMRNQIQEEINASYQYLAMGAYFSRDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSMRGqlteGVSDLINVPTVA 158
Cdd:cd01056    2 EECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRG----GRVVLQDIKKPE 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442621864 159 KQEWTDGAAALSDALDLEIKVTKSIRKLIQTCENKpyNHYHLVDYLTGVYLEEQLHGQRELAGKLTTLKKMMDTNGELGE 238
Cdd:cd01056   78 KDEWGSGLEALELALDLEKLVNQSLLDLHKLASEH--NDPHLADFLESEFLEEQVESIKKLAGYITNLKRVGKPQSGLGE 155

                 ....*
gi 442621864 239 FLFDK 243
Cdd:cd01056  156 YLFDK 160
Ferritin cd00904
Ferritin iron storage proteins; Ferritins are the primary iron storage proteins of most living ...
81-243 2.08e-23

Ferritin iron storage proteins; Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged residues on the protein shell inner surface of the L subunits promote ferrihydrite nucleation. Most plant ferritins combine both oxidase and nucleation functions in one chain: they have four interior glutamate residues as well as seven ferroxidase center residues.


Pssm-ID: 153098  Cd Length: 160  Bit Score: 92.71  E-value: 2.08e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442621864  81 CIKGMRNQIQEEINASYQYLAMGAYFSRDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSMRGqlteGVSDLINVPTVAKQ 160
Cdd:cd00904    4 VEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQNERG----GRVELQDIEKPPSD 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442621864 161 EWTDGAAALSDALDLEIKVTKSIRKLIQTCENKpyNHYHLVDYLTGVYLEEQLHGQRELAGKLTTLKKMMDTNGELGEFL 240
Cdd:cd00904   80 EWGGTLDAMEAALKLEKFVNQALLDLHELASEE--KDPHLCDFLESHFLDEQVKEIKQVGDILTNLERLNGQQAGSGEYL 157

                 ...
gi 442621864 241 FDK 243
Cdd:cd00904  158 FDR 160
Ferritin pfam00210
Ferritin-like domain; This family contains ferritins and other ferritin-like proteins such as ...
82-228 3.49e-23

Ferritin-like domain; This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.


Pssm-ID: 459712  Cd Length: 141  Bit Score: 91.19  E-value: 3.49e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442621864   82 IKGMRNQIQEEINASYQYLAMGAYFsrDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSMRGQLTegVSDLINVPTVAK-Q 160
Cdd:pfam00210   1 IAALNEQLADELTASYQYLQMHWYV--KGPGFEGLHEFFDEQAEEEREHADKLAERILDLGGTP--NGTRVELLAIEApP 76
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442621864  161 EWTDGAAALSDALDLEIKVTKSIRKLIQTCENKpyNHYHLVDYLTGvYLEEQLHGQRELAGKLTTLKK 228
Cdd:pfam00210  77 SFGSVLEVLEAALEHEKKVTKSLRELIELAEEE--GDYATADFLQW-FLDEQEEHEWFLEALLEKLER 141
Nonheme_Ferritin cd01055
nonheme-containing ferritins; Nonheme Ferritin domain, found in archaea and bacteria, is a ...
87-191 1.29e-20

nonheme-containing ferritins; Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.


Pssm-ID: 153113  Cd Length: 156  Bit Score: 84.85  E-value: 1.29e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442621864  87 NQIQEEINASYQYLAMGAYFsrDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSMRGQltEGVSDLINVPtvaKQEWTDGA 166
Cdd:cd01055   10 EQINLELYSSYLYLAMAAWF--DSKGLDGFANFFRVQAQEEREHAMKFFDYLNDRGG--RVELPAIEAP---PSEFESLL 82
                         90       100
                 ....*....|....*....|....*
gi 442621864 167 AALSDALDLEIKVTKSIRKLIQTCE 191
Cdd:cd01055   83 EVFEAALEHEQKVTESINNLVDLAL 107
FtnA COG1528
Ferritin [Inorganic ion transport and metabolism];
87-245 1.65e-20

Ferritin [Inorganic ion transport and metabolism];


Pssm-ID: 441137  Cd Length: 158  Bit Score: 84.80  E-value: 1.65e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442621864  87 NQIQEEINASYQYLAMGAYFsrDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSMRGQLTEgvsdlinVPTVA--KQEWTD 164
Cdd:COG1528   12 EQINLEFYSSYLYLAMAAWC--DEKGLPGFANFFRVQAQEERTHAMKFFDYLNDRGGRVE-------LPAIDapPNEFES 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442621864 165 GAAALSDALDLEIKVTKSIRKLIQTC-ENKpynhyhlvDYLTGV----YLEEQlHGQRELAGKLTTLKKMMDTNGElGEF 239
Cdd:COG1528   83 LLEVFEAALEHEQKVTKSINELVDLArEEK--------DYATENflqwFVKEQ-VEEEALARTILDKLKLAGDDGS-GLF 152

                 ....*.
gi 442621864 240 LFDKTL 245
Cdd:COG1528  153 MLDKEL 158
Ferritin_like cd00657
Ferritin-like superfamily of diiron-containing four-helix-bundle proteins; Ferritin-like, ...
92-217 1.25e-05

Ferritin-like superfamily of diiron-containing four-helix-bundle proteins; Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF).


Pssm-ID: 153097  Cd Length: 130  Bit Score: 43.64  E-value: 1.25e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442621864  92 EINASYQYLAMGAYFSRDTVnRPGFAEHffkaAKEEREHGSKLVEYLSMRGQLTEGVSDLINVPTVAKQEWTDGAAALSD 171
Cdd:cd00657   10 EYAAIIAYGQLAARAPDPDL-KDELLEI----ADEERRHADALAERLRELGGTPPLPPAHLLAAYALPKTSDDPAEALRA 84
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 442621864 172 ALDLEIKVTKSIRKLIQTCEnkpynHYHLVDYLTGVYLEEQLHGQR 217
Cdd:cd00657   85 ALEVEARAIAAYRELIEQAD-----DPELRRLLERILADEQRHAAW 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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