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Conserved domains on  [gi|442625891|ref|NP_001260028|]
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mitochondrial ribosomal protein L27, isoform B [Drosophila melanogaster]

Protein Classification

bL27 family ribosomal protein( domain architecture ID 1592)

bL27 family ribosomal protein such as bacterial 50S ribosomal protein L27, chloroplast 50S ribosomal protein L27, and metazoan mitochondrial 39S ribosomal protein L27

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L27 super family cl46636
Ribosomal L27 protein;
22-88 2.51e-22

Ribosomal L27 protein;


The actual alignment was detected with superfamily member pfam01016:

Pssm-ID: 480976  Cd Length: 77  Bit Score: 83.94  E-value: 2.51e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442625891   22 ASKKTGGSTRNKKGhARPKHRGWRVQDGHHVSEGTILATQLTTRFHPGLNVGFGRNGTLFAMEHGKV 88
Cdd:pfam01016   1 AHKKGGGSTRNGRD-SNGKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFALVDGYV 66
 
Name Accession Description Interval E-value
Ribosomal_L27 pfam01016
Ribosomal L27 protein;
22-88 2.51e-22

Ribosomal L27 protein;


Pssm-ID: 460025  Cd Length: 77  Bit Score: 83.94  E-value: 2.51e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442625891   22 ASKKTGGSTRNKKGhARPKHRGWRVQDGHHVSEGTILATQLTTRFHPGLNVGFGRNGTLFAMEHGKV 88
Cdd:pfam01016   1 AHKKGGGSTRNGRD-SNGKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFALVDGYV 66
RpmA COG0211
Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 ...
 22-88 3.74e-17

Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439981  Cd Length: 82  Bit Score: 70.85  E-value: 3.74e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442625891  22 ASKKTGGSTRNkkGH-ARPKHRGWRVQDGHHVSEGTILATQLTTRFHPGLNVGFGRNGTLFAMEHGKV 88
Cdd:COG0211    2 AHKKGGGSSRN--GRdSNSKRLGVKRFGGQKVKAGNIIVRQRGTKFHPGKNVGMGKDHTLFALVDGVV 67
rpmA PRK05435
50S ribosomal protein L27; Validated
 22-88 1.30e-15

50S ribosomal protein L27; Validated


Pssm-ID: 235464  Cd Length: 82  Bit Score: 66.59  E-value: 1.30e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442625891  22 ASKKTGGSTRNKKGHArPKHRGWRVQDGHHVSEGTILATQLTTRFHPGLNVGFGRNGTLFAMEHGKV 88
Cdd:PRK05435   2 AHKKGGGSTRNGRDSE-SKRLGVKRFGGQFVKAGNIIVRQRGTKFHPGVNVGRGKDHTLFALVDGVV 67
L27 TIGR00062
ribosomal protein L27; Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have ...
 21-88 3.79e-14

ribosomal protein L27; Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272882 [Multi-domain]  Cd Length: 84  Bit Score: 63.21  E-value: 3.79e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442625891   21 NASKKTGGSTRNKKGHArPKHRGWRVQDGHHVSEGTILATQLTTRFHPGLNVGFGRNGTLFAMEHGKV 88
Cdd:TIGR00062   1 MATKKGVGSTKNGRDSA-AKRLGVKKAGGQFVRAGSIIVRQRGTKFHPGENVGMGKDHTLFALSDGVV 67
 
Name Accession Description Interval E-value
Ribosomal_L27 pfam01016
Ribosomal L27 protein;
22-88 2.51e-22

Ribosomal L27 protein;


Pssm-ID: 460025  Cd Length: 77  Bit Score: 83.94  E-value: 2.51e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442625891   22 ASKKTGGSTRNKKGhARPKHRGWRVQDGHHVSEGTILATQLTTRFHPGLNVGFGRNGTLFAMEHGKV 88
Cdd:pfam01016   1 AHKKGGGSTRNGRD-SNGKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFALVDGYV 66
RpmA COG0211
Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 ...
 22-88 3.74e-17

Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439981  Cd Length: 82  Bit Score: 70.85  E-value: 3.74e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442625891  22 ASKKTGGSTRNkkGH-ARPKHRGWRVQDGHHVSEGTILATQLTTRFHPGLNVGFGRNGTLFAMEHGKV 88
Cdd:COG0211    2 AHKKGGGSSRN--GRdSNSKRLGVKRFGGQKVKAGNIIVRQRGTKFHPGKNVGMGKDHTLFALVDGVV 67
rpmA PRK05435
50S ribosomal protein L27; Validated
 22-88 1.30e-15

50S ribosomal protein L27; Validated


Pssm-ID: 235464  Cd Length: 82  Bit Score: 66.59  E-value: 1.30e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442625891  22 ASKKTGGSTRNKKGHArPKHRGWRVQDGHHVSEGTILATQLTTRFHPGLNVGFGRNGTLFAMEHGKV 88
Cdd:PRK05435   2 AHKKGGGSTRNGRDSE-SKRLGVKRFGGQFVKAGNIIVRQRGTKFHPGVNVGRGKDHTLFALVDGVV 67
L27 TIGR00062
ribosomal protein L27; Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have ...
 21-88 3.79e-14

ribosomal protein L27; Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272882 [Multi-domain]  Cd Length: 84  Bit Score: 63.21  E-value: 3.79e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442625891   21 NASKKTGGSTRNKKGHArPKHRGWRVQDGHHVSEGTILATQLTTRFHPGLNVGFGRNGTLFAMEHGKV 88
Cdd:TIGR00062   1 MATKKGVGSTKNGRDSA-AKRLGVKKAGGQFVRAGSIIVRQRGTKFHPGENVGMGKDHTLFALSDGVV 67
rpl27 CHL00121
ribosomal protein L27; Reviewed
 22-88 4.78e-13

ribosomal protein L27; Reviewed


Pssm-ID: 214370  Cd Length: 86  Bit Score: 60.41  E-value: 4.78e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442625891  22 ASKKTGGSTRNKKgHARPKHRGWRVQDGHHVSEGTILATQLTTRFHPGLNVGFGRNGTLFAMEHGKV 88
Cdd:CHL00121   2 AHKKGAGSTKNGR-DSNAKRLGVKRFGGEKVSAGNILIRQRGTKFKPGLNVGCGKDFTLYALIDGFV 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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