|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
223-506 |
3.46e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 3.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 223 ARTKGTLEKTILLLQHTQKDCERLREDLEDKGLEwIQRQQEKEYLHRTELKQAEEKLMEVQLRAKlkfcELESQLRAKDE 302
Cdd:COG1196 249 EELEAELEELEAELAELEAELEELRLELEELELE-LEEAQAEEYELLAELARLEQDIARLEERRR----ELEERLEELEE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 303 ESKQAQEayrmevshKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIRKENIHTARLAEANQREQDLIDRVKSL 382
Cdd:COG1196 324 ELAELEE--------ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 383 TKELNTLKANKEHNERDLRDRLALSQDEISVLRTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEISALSKA 462
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 442625671 463 KADLIHESEERLKLSNRVALLEAQNEMLRTELEAKTEKEKEIQQ 506
Cdd:COG1196 476 EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
255-514 |
4.31e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.43 E-value: 4.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 255 LEWIQRQQEK--EYLHRTELKQAEEKLMEVQLRAKLKfcELESQLRAKDEESKQAQEAYRMEVS------HKLALKQEHL 326
Cdd:COG1196 234 LRELEAELEEleAELEELEAELEELEAELAELEAELE--ELRLELEELELELEEAQAEEYELLAelarleQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 327 RTAEQKIQELQTRLQQVETEEQGHREELIRKENIHTARLAEANQREQDLIDRVKSLTKELNTLKANKEHNERDLRDRLAL 406
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 407 SQDEISVLRTSSQRRspctSLPDNASAELNRLTSEAdslrcvLELKQAEISALSKAKADLIHESEERLKLSNRVALLEAQ 486
Cdd:COG1196 392 LRAAAELAAQLEELE----EAEEALLERLERLEEEL------EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260
....*....|....*....|....*...
gi 442625671 487 NEMLRTELEAKTEKEKEIQQKMEELQKA 514
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEA 489
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
258-514 |
3.56e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 3.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 258 IQRQQEKEYLhRTELKQAEEKLMEvqLRAKLKfcELESQLRAKDEESKQAQEAYRmEVSHKLALKQEHLRTAEQKIQELQ 337
Cdd:TIGR02168 673 LERRREIEEL-EEKIEELEEKIAE--LEKALA--ELRKELEELEEELEQLRKELE-ELSRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 338 TRLQQVETEeqghREELIRKENIHTARLAEANQREQDLIDRVKSLTKELNTLKANKEHNER---DLRDRLALSQDEISVL 414
Cdd:TIGR02168 747 ERIAQLSKE----LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREaldELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 415 RtssQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEIS----ALSKAKADLIHESEERLKLSNRVALLEAQNEML 490
Cdd:TIGR02168 823 R---ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEeleeLIEELESELEALLNERASLEEALALLRSELEEL 899
|
250 260
....*....|....*....|....
gi 442625671 491 RTELEAKTEKEKEIQQKMEELQKA 514
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREK 923
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
230-553 |
2.00e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 2.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 230 EKTILLLQHTQKDCERLREDLE--DKGLEWIQRQQEKEylhrTELKQAEEKLMEVQLR-AKLKFCELESQLRAKDEESKQ 306
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNelERQLKSLERQAEKA----ERYKELKAELRELELAlLVLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 307 AQEAYRmEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIRKENihtaRLAEANQREQDLIDRVKSLTKEL 386
Cdd:TIGR02168 251 AEEELE-ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ----QKQILRERLANLERQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 387 NTLKANKEhnerDLRDRLALSQDEISVLRTSSqrrspctslpDNASAELNRLTSEADSLRCVLELKQAEISALSKAKADL 466
Cdd:TIGR02168 326 EELESKLD----ELAEELAELEEKLEELKEEL----------ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 467 iheSEERLKLSNRVALLEAQNEMLRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTR-----LTYDKEELQYHLKQRSL 541
Cdd:TIGR02168 392 ---ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEeeleeLQEELERLEEALEELRE 468
|
330
....*....|..
gi 442625671 542 QLQSAESKLQDL 553
Cdd:TIGR02168 469 ELEEAEQALDAA 480
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
271-553 |
6.90e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 6.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 271 ELKQAEEKLMEVQLRAKlkfcELESQLRAKDEESKQAQEAyrmevshklalkqehlrtaeqkiQELQTRLQQVETEEQGH 350
Cdd:COG1196 180 KLEATEENLERLEDILG----ELERQLEPLERQAEKAERY-----------------------RELKEELKELEAELLLL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 351 REELIRkenihtARLAEANQREQDLIDRVKSLTKELNTLKANKEHnerdLRDRLALSQDEISVLRTSSQRrspctslpdn 430
Cdd:COG1196 233 KLRELE------AELEELEAELEELEAELEELEAELAELEAELEE----LRLELEELELELEEAQAEEYE---------- 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 431 ASAELNRLTSEADSLRcvlELKQAEISALSKAKADLIHESEERLKLSNRVALLEAQNEMLRTELEAKTEKEKEIQQKMEE 510
Cdd:COG1196 293 LLAELARLEQDIARLE---ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 442625671 511 LQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESKLQDL 553
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
316-563 |
8.30e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.62 E-value: 8.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 316 SHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELirkeNIHTARLAEANQREQDLIDRVKSLTKELNTLKANKEH 395
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL----AALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 396 NERDLRDRLALSQDEISVLRTSSQRRSPCTSLpdnASAELNRLTSEADSLRCVLELKQAEISALSKAKADLIHESEERLK 475
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLL---SPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 476 LSNRVALLEAQNEMLRTELEAKtekEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESKLQDLST 555
Cdd:COG4942 172 ERAELEALLAELEEERAALEAL---KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGF 248
|
....*...
gi 442625671 556 GSHDNSLS 563
Cdd:COG4942 249 AALKGKLP 256
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
226-529 |
2.35e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 2.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 226 KGTLEKTILLLQHtqkdcERLREDLE--DKGLEWIQRQQEKeylhRTELKQAEEKLMEvQLRAKLKfcELESQLRAKDEE 303
Cdd:TIGR02169 220 KREYEGYELLKEK-----EALERQKEaiERQLASLEEELEK----LTEEISELEKRLE-EIEQLLE--ELNKKIKDLGEE 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 304 SKQAQEAYRMEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREElirKENIHTARLAEANQREQdLIDRVKSLT 383
Cdd:TIGR02169 288 EQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE---IEELEREIEEERKRRDK-LTEEYAELK 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 384 KELNTLKANKEHNE---RDLRDRLALSQDEISVLRtssQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEISALS 460
Cdd:TIGR02169 364 EELEDLRAELEEVDkefAETRDELKDYREKLEKLK---REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE 440
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442625671 461 ---KAKADLIHESEERLK-LSNRVALLEAQNEMLRTELEaktEKEKEIQQKMEELQKAYKYESIKRTRLTYDK 529
Cdd:TIGR02169 441 eekEDKALEIKKQEWKLEqLAADLSKYEQELYDLKEEYD---RVEKELSKLQRELAEAEAQARASEERVRGGR 510
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
265-553 |
3.34e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 57.67 E-value: 3.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 265 EYLHRTELKQAEEKLMEVQLRAKLKFCELESQLRAKDEESKQAQEAYRMEV-SHKLALKQEHLRTAEQK--IQELQTRLQ 341
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQlKEKLELEEEYLLYLDYLklNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 342 QVETEEQGHREELIRKENIHtARLAEANQREQDLIDRVKSLTKE-LNTLKANKEHNERDLRDRLALSQDEISVLRTSSQR 420
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKE-EEKLAQVLKENKEEEKEKKLQEEeLKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 421 RSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEISALSKAKADLIHESEERLK--------LSNRVALLEAQNEMLRT 492
Cdd:pfam02463 323 KKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAkkkleserLSSAAKLKEEELELKSE 402
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442625671 493 ELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESKLQDL 553
Cdd:pfam02463 403 EEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKD 463
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
231-545 |
4.94e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 4.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 231 KTILLLQHTQKDCERLREDLEDKGLEWIQRQQEKEYLhRTELKQAEEKLMEvqLRAKLKFCELESQLRAKDEESKQAQEa 310
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEEL-EEELEELEAELEE--LREELEKLEKLLQLLPLYQELEALEA- 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 311 yrmevshKLALKQEHLRTAEQKIQELQTRLQQVE------TEEQGHREELIRKENIHT-ARLAEANQREQDLIDRVKSLT 383
Cdd:COG4717 140 -------ELAELPERLEELEERLEELRELEEELEeleaelAELQEELEELLEQLSLATeEELQDLAEELEELQQRLAELE 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 384 KELNTLKANKEHNERDLRDRLALSQDEISVLRTSSQRRSPCT-----SLPDNASAELNRLTSEADSLRCVLELKQAEISA 458
Cdd:COG4717 213 EELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIaaallALLGLGGSLLSLILTIAGVLFLVLGLLALLFLL 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 459 LSKAKADLIHESEERLKLSNRVALLEAQNEMLRTELEAKTEKEKEiqqkmEELQKAYKYESIKRTRLTYDKEELQYHLKQ 538
Cdd:COG4717 293 LAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPE-----ELLELLDRIEELQELLREAEELEEELQLEE 367
|
....*..
gi 442625671 539 RSLQLQS 545
Cdd:COG4717 368 LEQEIAA 374
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
320-562 |
6.28e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 53.38 E-value: 6.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 320 ALKQEHLRTAEQK--IQELQTRLQQVE-TEEQGHREELIRKenihtaRLAEANQReqdlidrVKSLTKELNTLKANKEHN 396
Cdd:PRK11281 47 ALNKQKLLEAEDKlvQQDLEQTLALLDkIDRQKEETEQLKQ------QLAQAPAK-------LRQAQAELEALKDDNDEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 397 ERDLRDRLALSQDEISVLRTSSQRRspctslpdNASAELNRLTSEADSLRCVLELKQAEISALSK--------------A 462
Cdd:PRK11281 114 TRETLSTLSLRQLESRLAQTLDQLQ--------NAQNDLAEYNSQLVSLQTQPERAQAALYANSQrlqqirnllkggkvG 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 463 KADLIHEseERLKLSNRVALLEAQNEMLRTELEAKTekekeiqQKMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQ 542
Cdd:PRK11281 186 GKALRPS--QRVLLQAEQALLNAQNDLQRKSLEGNT-------QLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLT 256
|
250 260
....*....|....*....|...
gi 442625671 543 L---QSAESKLQDLSTGSHDNSL 562
Cdd:PRK11281 257 LsekTVQEAQSQDEAARIQANPL 279
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
228-405 |
9.79e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 9.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 228 TLEKTILLLQHTQKDCERLREDLEDK--------GLEWIQRQQEKEyLHRTELKQAEEKLmeVQLRAKLKfcELESQLRA 299
Cdd:COG4913 246 DAREQIELLEPIRELAERYAAARERLaeleylraALRLWFAQRRLE-LLEAELEELRAEL--ARLEAELE--RLEARLDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 300 KDEESKQAQEAYR-------MEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIR--------------KE 358
Cdd:COG4913 321 LREELDELEAQIRgnggdrlEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAAlraeaaallealeeEL 400
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 442625671 359 NIHTARLAEANQREQDLIDRVKSLTKELNTLKANK---EHNERDLRDRLA 405
Cdd:COG4913 401 EALEEALAEAEAALRDLRRELRELEAEIASLERRKsniPARLLALRDALA 450
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
293-512 |
9.80e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.33 E-value: 9.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 293 LESQLRAKDEESKQAQEAYRMEvshkLALKQEHLRTAEQKIQELQTRLQQVETEEQGHR-----EELIRKENIHTARLAE 367
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQ----LPELRKELEEAEAALEEFRQKNGLVDLSEEAKLllqqlSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 368 ANQREQDLIDRVKSLTKELNTLKANKEhnERDLRDRLALSQDEISVLRTSSQRRSPctslpD--NASAELNRLTSE-ADS 444
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQSPV--IQQLRAQLAELEAELAELSARYTPNHP-----DviALRAQIAALRAQlQQE 310
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442625671 445 LRCVLELKQAEISALSKAKADLIHESEERLKLSNRVALLEAQNEMLRTELEAKTEKEKEIQQKMEELQ 512
Cdd:COG3206 311 AQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR 378
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
176-569 |
1.30e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.28 E-value: 1.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 176 ARLAKFFQDTQFERKEEQrqilglSVMVQFMSKELDAVACKENKHQCARTKGTLE---KTILLLQHTQKDCERLREDLED 252
Cdd:TIGR00618 321 RSRAKLLMKRAAHVKQQS------SIEEQRRLLQTLHSQEIHIRDAHEVATSIREiscQQHTLTQHIHTLQQQKTTLTQK 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 253 KGLEWIQRQQEKEYLHRTELKQAEEKLMEVQLRAKLKFCELEsqlrakdEESKQAQEAYRMEVSHKLALKQEHLRTAEQK 332
Cdd:TIGR00618 395 LQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQ-------QRYAELCAAAITCTAQCEKLEKIHLQESAQS 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 333 IQELQTRLQQVETEEQghREELIRKENIHTARLAEANQRE-------------------------QDLIDRVKSLTKELN 387
Cdd:TIGR00618 468 LKEREQQLQTKEQIHL--QETRKKAVVLARLLELQEEPCPlcgscihpnparqdidnpgpltrrmQRGEQTYAQLETSEE 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 388 TLkankEHNERDLRDRLALSQDEISVLRTSSQRRSPCtslpdnasaeLNRLTSEADSLRCVLELKQAEISALSKAKADLI 467
Cdd:TIGR00618 546 DV----YHQLTSERKQRASLKEQMQEIQQSFSILTQC----------DNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLA 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 468 HESEERL-----------------KLSNRVALLEAQNEMLRTELEAKTEKEKEI------QQKMEELQKAYKYESIKRTR 524
Cdd:TIGR00618 612 CEQHALLrklqpeqdlqdvrlhlqQCSQELALKLTALHALQLTLTQERVREHALsirvlpKELLASRQLALQKMQSEKEQ 691
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 442625671 525 LTYDKEELQYHLkqrsLQLQSAESKLQDLSTGSHDNSLSSHSRCS 569
Cdd:TIGR00618 692 LTYWKEMLAQCQ----TLLRELETHIEEYDREFNEIENASSSLGS 732
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
229-515 |
1.47e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.94 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 229 LEKTILLLQHTQKDCERLREDLEDKGLEWIQRQQEKEY---LHRTELKQAEEKLMEVQLRAKlKFCELESQLRAKDEESK 305
Cdd:TIGR04523 150 KEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKnidKIKNKLLKLELLLSNLKKKIQ-KNKSLESQISELKKQNN 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 306 QAQEayrmevshKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIRKENihtaRLAEANQREQDLIDRVKSLTKE 385
Cdd:TIGR04523 229 QLKD--------NIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQK----ELEQNNKKIKELEKQLNQLKSE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 386 LNTLKANKEHN-ERDLRDRLALSQDEISVLRTS-SQRRSPCTSLPD---NASAELNRLTSEADSLRCVLELKQAEISALS 460
Cdd:TIGR04523 297 ISDLNNQKEQDwNKELKSELKNQEKKLEEIQNQiSQNNKIISQLNEqisQLKKELTNSESENSEKQRELEEKQNEIEKLK 376
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 442625671 461 KAKADLIHESEErlklsnrvalLEAQNEMLRTELEAKTEKEKEIQQKMEELQKAY 515
Cdd:TIGR04523 377 KENQSYKQEIKN----------LESQINDLESKIQNQEKLNQQKDEQIKKLQQEK 421
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
240-577 |
2.20e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 2.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 240 QKDCERLREDLED--KGLEWIQRQQEKEYLHRTELKQAEEKLMEVQLRAKLKFCELESQLRaKDEESKQAQEAYRMEVSH 317
Cdd:PTZ00121 1456 AKKAEEAKKKAEEakKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK-KAEEAKKADEAKKAEEAK 1534
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 318 KL--ALKQEHLRTAEQ--KIQELQtRLQQVETEEQGHREEliRKENIHTARLAEANQREQDLIDRVKSLTKELNTLKANK 393
Cdd:PTZ00121 1535 KAdeAKKAEEKKKADElkKAEELK-KAEEKKKAEEAKKAE--EDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 394 EHNERDLRDRLALSQDEISVLRTSSQRRSpctslpdnasaelnrltSEADSLRCVLELKQAEISALSKAKADLIHESEER 473
Cdd:PTZ00121 1612 AKKAEEAKIKAEELKKAEEEKKKVEQLKK-----------------KEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK 1674
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 474 LKLSNrvalLEAQNEMLRTELEAKTEKEKEiQQKMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESKLQDL 553
Cdd:PTZ00121 1675 KKAEE----AKKAEEDEKKAAEALKKEAEE-AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA 1749
|
330 340
....*....|....*....|....
gi 442625671 554 STGSHDNSLSSHSRCSLGRSGLEI 577
Cdd:PTZ00121 1750 KKDEEEKKKIAHLKKEEEKKAEEI 1773
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
222-533 |
1.49e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 222 CARTKGTLEKTILLLQhtqKDCERLREDLEDKGLEWIQRQQEKEYLHR------TELKQAEEKLMEVQLR-AKLKFCELE 294
Cdd:TIGR02169 714 ASRKIGEIEKEIEQLE---QEEEKLKERLEELEEDLSSLEQEIENVKSelkeleARIEELEEDLHKLEEAlNDLEARLSH 790
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 295 SQLRAKDEEsKQAQEAYRMEVSHKLA-----LKQEHLRT--AEQKIQELQTrlQQVETEEQghREELIRKENIHTARLAE 367
Cdd:TIGR02169 791 SRIPEIQAE-LSKLEEEVSRIEARLReieqkLNRLTLEKeyLEKEIQELQE--QRIDLKEQ--IKSIEKEIENLNGKKEE 865
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 368 ANQREQDLIDRVKSLTKELNTLKANKEHNERDLRDrlalSQDEIsvlrtssqrrspctslpDNASAELNRLTSEADSLRC 447
Cdd:TIGR02169 866 LEEELEELEAALRDLESRLGDLKKERDELEAQLRE----LERKI-----------------EELEAQIEKKRKRLSELKA 924
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 448 VLELKQAEISALSKAKADLIHESEERLKLSNrvalLEAQNEMLRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTY 527
Cdd:TIGR02169 925 KLEALEEELSEIEDPKGEDEEIPEEELSLED----VQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEE 1000
|
....*.
gi 442625671 528 DKEELQ 533
Cdd:TIGR02169 1001 ERKAIL 1006
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
328-549 |
1.51e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.29 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 328 TAEQKIQELQTRLQQVETEEQGHREELIRKEnihtARLAEANQREQDLIDRVKSLTKELNTLKANKEHNERDLRDRLALS 407
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQ----AELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 408 QDEISVLRTSSQRRSPCTSLPDNASaeLNRLTSEADSLRCVLELKQAEISALSKAKAdliheseerlKLSNRVALLEAQN 487
Cdd:COG3883 89 GERARALYRSGGSVSYLDVLLGSES--FSDFLDRLSALSKIADADADLLEELKADKA----------ELEAKKAELEAKL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442625671 488 EMLRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESK 549
Cdd:COG3883 157 AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
235-524 |
4.38e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 4.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 235 LLQHTQKDCERLREDLedKGLEWIQRQQEKEYLH-RTELKQAEEKLMEVQLRAKLKfcELESQLRAKD-EESKQAQEAYR 312
Cdd:PRK03918 453 LLEEYTAELKRIEKEL--KEIEEKERKLRKELRElEKVLKKESELIKLKELAEQLK--ELEEKLKKYNlEELEKKAEEYE 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 313 --MEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELirkENIHTARLAEANQREQDLIDRVKSLT---KELN 387
Cdd:PRK03918 529 klKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEEL---AELLKELEELGFESVEELEERLKELEpfyNEYL 605
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 388 TLKaNKEHNERDLRDRLALSQDEIsvlrtssqrrspctslpDNASAELNRLTSEADSLRcvlelkqAEISALSKAKADLI 467
Cdd:PRK03918 606 ELK-DAEKELEREEKELKKLEEEL-----------------DKAFEELAETEKRLEELR-------KELEELEKKYSEEE 660
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442625671 468 HE--SEERLKLSNRVALLEAQ---NEMLRTELEAKTEKEKEIQQKMEELQKayKYESIKRTR 524
Cdd:PRK03918 661 YEelREEYLELSRELAGLRAEleeLEKRREEIKKTLEKLKEELEEREKAKK--ELEKLEKAL 720
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
259-519 |
4.71e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 4.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 259 QRQQEKEYLhRTELKQAEEKLMEVQLRAKlkfcELESQLRAKDEESKQAQEAYRmevshklALKQEhLRTAEQKIQELQT 338
Cdd:COG4942 24 EAEAELEQL-QQEIAELEKELAALKKEEK----ALLKQLAALERRIAALARRIR-------ALEQE-LAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 339 RLQQVETEEQGHREELIRkenihtaRLAEA----NQREQDLIDRVKSLTKELNTLKANKEHNERDlrdrlalsQDEISVL 414
Cdd:COG4942 91 EIAELRAELEAQKEELAE-------LLRALyrlgRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR--------REQAEEL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 415 RtssqrrspctslpdnasAELNRLTSEADSLRCVLELKQAEISALSKAKADLIHESEERLKLsnrVALLEAQNEMLRTEL 494
Cdd:COG4942 156 R-----------------ADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKL---LARLEKELAELAAEL 215
|
250 260
....*....|....*....|....*
gi 442625671 495 EAKTEKEKEIQQKMEELQKAYKYES 519
Cdd:COG4942 216 AELQQEAEELEALIARLEAEAAAAA 240
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
296-553 |
4.74e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 47.04 E-value: 4.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 296 QLRAKDEESKQAQEAYRMEVSHKLA----------LKQEHLRTAEQKiQELQTRLQQVEteeqghreelirkenihtARL 365
Cdd:pfam05557 4 LIESKARLSQLQNEKKQMELEHKRArielekkasaLKRQLDRESDRN-QELQKRIRLLE------------------KRE 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 366 AEANQREQDLIDRVKSLTK---ELNTLKANKEHNERDLRDRLALSQDEISVLRTSSQRrspctslpdnASAELNRLTSEA 442
Cdd:pfam05557 65 AEAEEALREQAELNRLKKKyleALNKKLNEKESQLADAREVISCLKNELSELRRQIQR----------AELELQSTNSEL 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 443 DSLRCVLELKQAEISALSK------AKADLIHESEERLK-LSNRVALLEAQNEMLRT---ELEAKTEKEKEIQQKMEELQ 512
Cdd:pfam05557 135 EELQERLDLLKAKASEAEQlrqnleKQQSSLAEAEQRIKeLEFEIQSQEQDSEIVKNsksELARIPELEKELERLREHNK 214
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 442625671 513 kayKYESIKRTRLTYdKEELqYHLKQRSLQLQSAESKLQDL 553
Cdd:pfam05557 215 ---HLNENIENKLLL-KEEV-EDLKRKLEREEKYREEAATL 250
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
241-531 |
5.87e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 5.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 241 KDCERLREDLEDKGLEWIQRQQEKEYLHR---TELKQAEEKLMEVQLRAklkfceLESQLRAKDEESKQAQEAyrmevsh 317
Cdd:PTZ00121 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALrkaEEAKKAEEARIEEVMKL------YEEEKKMKAEEAKKAEEA------- 1618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 318 klALKQEHLRTAEQkIQELQTRLQQVETEEQGHREELIRKENIHTARLAEANQREQDLIDRVKSLTKElntlkankEHNE 397
Cdd:PTZ00121 1619 --KIKAEELKKAEE-EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA--------EEDE 1687
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 398 RDLRDRLALSQDEisvLRTSSQRRSPCTSlpDNASAELNRLTSEADSLRcVLELKQAEISALSKAKADLIHESEErlkls 477
Cdd:PTZ00121 1688 KKAAEALKKEAEE---AKKAEELKKKEAE--EKKKAEELKKAEEENKIK-AEEAKKEAEEDKKKAEEAKKDEEEK----- 1756
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 442625671 478 NRVALLEAQNEmlRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEE 531
Cdd:PTZ00121 1757 KKIAHLKKEEE--KKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFA 1808
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
246-497 |
6.03e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.83 E-value: 6.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 246 LREDLED--KGLEWIQRQQEKEYLHRTELKQAEEKLMEVQlraklkfCELEsqlRAKDEESKQAQEAYRmevshKLALKQ 323
Cdd:PRK11281 61 VQQDLEQtlALLDKIDRQKEETEQLKQQLAQAPAKLRQAQ-------AELE---ALKDDNDEETRETLS-----TLSLRQ 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 324 ehlrtAEQKIQELQTRLQQVETEEQGHREELI----RKENIHTArLAEANQREQDlidrvksLTKELNTLKANKEHNERD 399
Cdd:PRK11281 126 -----LESRLAQTLDQLQNAQNDLAEYNSQLVslqtQPERAQAA-LYANSQRLQQ-------IRNLLKGGKVGGKALRPS 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 400 LRDRLALSQD----EISVLRTSSQRRSPCTSL----PDNASAELNRLTSEADSLRCVLELKQAEIS------ALSKAKA- 464
Cdd:PRK11281 193 QRVLLQAEQAllnaQNDLQRKSLEGNTQLQDLlqkqRDYLTARIQRLEHQLQLLQEAINSKRLTLSektvqeAQSQDEAa 272
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 442625671 465 -----DLIH-ESEERLKLSNRvaLLEAQ---NEMLRTELEAK 497
Cdd:PRK11281 273 riqanPLVAqELEINLQLSQR--LLKATeklNTLTQQNLRVK 312
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
259-544 |
6.11e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 46.66 E-value: 6.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 259 QRQQEKEYLHRTELKQ-AEEKLMEVQLRAKLkfcelesqlrakdEESKQAQEAyrmEVSHKLALKQEHLRTAEQKIQELQ 337
Cdd:pfam17380 288 QQQEKFEKMEQERLRQeKEEKAREVERRRKL-------------EEAEKARQA---EMDRQAAIYAEQERMAMERERELE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 338 tRLQQvetEEQGHREELIRKENI--HTARLAEANQREQDLIDRVKSLTKELNTLKANK-EHNERDLRDRLALSQDEISVL 414
Cdd:pfam17380 352 -RIRQ---EERKRELERIRQEEIamEISRMRELERLQMERQQKNERVRQELEAARKVKiLEEERQRKIQQQKVEMEQIRA 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 415 RTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEISALSKAKADLIHESEERLKLSN-RVALLEAQNEMLRTE 493
Cdd:pfam17380 428 EQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEqRRKILEKELEERKQA 507
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 442625671 494 LEAKTEKEKEIQQKMEELQKAYkYESIKRTRLTYDKEELQYHLKQRSLQLQ 544
Cdd:pfam17380 508 MIEEERKRKLLEKEMEERQKAI-YEEERRREAEEERRKQQEMEERRRIQEQ 557
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
207-549 |
7.96e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 7.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 207 SKELDAVACKENKHQCARTKGTLEKtilllqhtQKDCERLREDLEDKGLEWIQRQQEKEYLHRTELKQAEEKLMEVQLRA 286
Cdd:PTZ00121 1341 AKKAAEAAKAEAEAAADEAEAAEEK--------AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK 1412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 287 KLKFCELESQLRAKDEESKQAQEAYRmevshklalKQEHLRTAEqkiqELQTRLQQVETEEQGHREELIRKENIHTARLA 366
Cdd:PTZ00121 1413 AAAAKKKADEAKKKAEEKKKADEAKK---------KAEEAKKAD----EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKA 1479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 367 EANQREQDLIDRVKSLTKELNTLKANKEHNERDLRDRLALSQDEISVLRTSSQRRSPctslPDNASAELNRltsEADSLR 446
Cdd:PTZ00121 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA----DEAKKAEEKK---KADELK 1552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 447 CVLELKQAEisalSKAKADLIHESEERLKLSNRVALLEAQNEMLRTElEAKTEKEKEIQQKMEELQKAyKYESIKRTRLT 526
Cdd:PTZ00121 1553 KAEELKKAE----EKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIE-EVMKLYEEEKKMKAEEAKKA-EEAKIKAEELK 1626
|
330 340
....*....|....*....|...
gi 442625671 527 YDKEELQyhlKQRSLQLQSAESK 549
Cdd:PTZ00121 1627 KAEEEKK---KVEQLKKKEAEEK 1646
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
248-531 |
1.04e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 248 EDLEDKGLEWIQRQQEKEYLHRTElKQAEEKLMEVQLRAKLKFCELESQLRAKDEESKQAQEAYRMEVSHKLALKQEHLR 327
Cdd:PTZ00121 1401 EEDKKKADELKKAAAAKKKADEAK-KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKA 1479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 328 TAEQKIQELQTRLQQVETEEQGHREELIRKENIHTARLAEaNQREQDLIDRVKSLTKELNTLKANKEHNERDLRDRLALS 407
Cdd:PTZ00121 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE-EAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELK 1558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 408 QDEiSVLRTSSQRRSPCTSLPDNASAELNRLTSEAdslRCVLELKQAEISALSKAKaDLIHESEERLKlsnrvALLEAQN 487
Cdd:PTZ00121 1559 KAE-EKKKAEEAKKAEEDKNMALRKAEEAKKAEEA---RIEEVMKLYEEEKKMKAE-EAKKAEEAKIK-----AEELKKA 1628
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 442625671 488 EMLRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEE 531
Cdd:PTZ00121 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
208-510 |
1.23e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 208 KELDAVACKENKHQCARTKGTLEKTILLLQHTQKDCERLREDLEDKGLEWIQR--QQEKEYLHRTELKQAEEKLMEVQLR 285
Cdd:pfam02463 200 LKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEieSSKQEIEKEEEKLAQVLKENKEEEK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 286 AKlKFCELESQLRAKDEESKQAQEAYRMEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIRKENIH---- 361
Cdd:pfam02463 280 EK-KLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEeeee 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 362 ---TARLAEANQREQDLIDRVKSLTKELNTLKANKEhNERDLRDRLALSQDEISVLRtsSQRRSPCTSLPDNASAELNRL 438
Cdd:pfam02463 359 eelEKLQEKLEQLEEELLAKKKLESERLSSAAKLKE-EELELKSEEEKEAQLLLELA--RQLEDLLKEEKKEELEILEEE 435
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442625671 439 TSEADSLRCVLELKQAEISALSKAKADLIHESEERLKLSNRvALLEAQNEMLRTELEAKTEKEKEIQQKMEE 510
Cdd:pfam02463 436 EESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKE-TQLVKLQEQLELLLSRQKLEERSQKESKAR 506
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
241-522 |
1.30e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.90 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 241 KDCERLREDLEDKGLEWIQRQQEKEYLHrtELKQAEEKLMEVQLRAKLKFCELESQLRAKD----EESKQAQEAYRMEVS 316
Cdd:PTZ00121 1104 KKTETGKAEEARKAEEAKKKAEDARKAE--EARKAEDARKAEEARKAEDAKRVEIARKAEDarkaEEARKAEDAKKAEAA 1181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 317 HKL--ALKQEHLRTAE--QKIQELQTRLQQVETEEQGHREELIRKENIHTARLAEANQREQDLIDRVKSLTKELNTLKAN 392
Cdd:PTZ00121 1182 RKAeeVRKAEELRKAEdaRKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEAR 1261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 393 KEHNERDLRDRLALSQDEISVLRTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEISAlsKAKADLIHESEE 472
Cdd:PTZ00121 1262 MAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA--KKKADAAKKKAE 1339
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 442625671 473 RLKLSNRVAllEAQNEMLRTELEAKTEKEKEIQQKMEELQKayKYESIKR 522
Cdd:PTZ00121 1340 EAKKAAEAA--KAEAEAAADEAEAAEEKAEAAEKKKEEAKK--KADAAKK 1385
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
244-517 |
1.63e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.30 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 244 ERLREDLEDKGLEWIQRQQEKEYLHRTELKQAEEKL-MEVQLRAKLKFCELESQLRAKDEESKQAQEayrmEVSHKLalk 322
Cdd:PRK05771 34 EDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLnPLREEKKKVSVKSLEELIKDVEEELEKIEK----EIKELE--- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 323 qEHLRTAEQKIQELQTRLQQVE------TEEqghrEELIRKENIH--TARLAEANQREQDLIDRVKSL-----TKELNTL 389
Cdd:PRK05771 107 -EEISELENEIKELEQEIERLEpwgnfdLDL----SLLLGFKYVSvfVGTVPEDKLEELKLESDVENVeyistDKGYVYV 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 390 ----KANKEHNERDLRDRLALSQDEISVLRTSSQRRSpctslpdNASAELNRLTSEADSLRcvlelkqAEISALSKAKAD 465
Cdd:PRK05771 182 vvvvLKELSDEVEEELKKLGFERLELEEEGTPSELIR-------EIKEELEEIEKERESLL-------EELKELAKKYLE 247
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 442625671 466 LIHESEErlKLSNRVALLEAQNEMLRTE----LEA--KTEKEKEIQQKMEELQKAYKY 517
Cdd:PRK05771 248 ELLALYE--YLEIELERAEALSKFLKTDktfaIEGwvPEDRVKKLKELIDKATGGSAY 303
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
265-411 |
2.32e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.77 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 265 EYLHRTELKQAEEKLMEVQLRAKLKFCEL--ESQLRAKDEESKQAQEAYRmevshklalkqeHLRTAEQKIQELQTRLQQ 342
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIkkEALLEAKEEIHKLRNEFEK------------ELRERRNELQKLEKRLLQ 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442625671 343 veteeqghREELIRKenihtaRLAEANQREQDLIDRVKSLT---KELNTLKANKEHNERDLRDRL----ALSQDEI 411
Cdd:PRK12704 94 --------KEENLDR------KLELLEKREEELEKKEKELEqkqQELEKKEEELEELIEEQLQELerisGLTAEEA 155
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
230-553 |
2.49e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.63 E-value: 2.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 230 EKTILLLQHTQKDCERLREDLEDKGLEwIQRQ-QEKEYLHRTELKQAEEKLMEVQlRAKLKFCELESQLRAKDEESKQAQ 308
Cdd:TIGR04523 334 NKIISQLNEQISQLKKELTNSESENSE-KQRElEEKQNEIEKLKKENQSYKQEIK-NLESQINDLESKIQNQEKLNQQKD 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 309 eayrmevshklalkqehlrtaeQKIQELQTRLQQVETEEQghreeLIRKENIhtarlaEANQREQDLIDRVKSLTKELNT 388
Cdd:TIGR04523 412 ----------------------EQIKKLQQEKELLEKEIE-----RLKETII------KNNSEIKDLTNQDSVKELIIKN 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 389 LKANKEHNERdlrdrlalsqdEISVLrtssqrrspctslpdnaSAELNRLTSEADSLRCVLELKQAEISALSKAKADLih 468
Cdd:TIGR04523 459 LDNTRESLET-----------QLKVL-----------------SRSINKIKQNLEQKQKELKSKEKELKKLNEEKKEL-- 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 469 eSEERLKLSNRVALLEAQNEMLRTEleaKTEKEKEIQQKMEELQK---AYKYESIKRTRLTYDKEELQYHLKQRSlqLQS 545
Cdd:TIGR04523 509 -EEKVKDLTKKISSLKEKIEKLESE---KKEKESKISDLEDELNKddfELKKENLEKEIDEKNKEIEELKQTQKS--LKK 582
|
....*...
gi 442625671 546 AESKLQDL 553
Cdd:TIGR04523 583 KQEEKQEL 590
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
332-514 |
2.82e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 2.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 332 KIQELQTRLQQVETEEQGHREELIRKEnihtARLAEANQREQDLIDRVKSLTKELntlkANKEHNERDLRDRLALSQDEI 411
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELE----DELAALEARLEAAKTELEDLEKEI----KRLELEIEEVEARIKKYEEQL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 412 SVLRTSSqrrspctslpdnasaELNRLTSEADSLRcvlelkqAEISALSKAKADLIHESEErlkLSNRVALLEAQNEMLR 491
Cdd:COG1579 83 GNVRNNK---------------EYEALQKEIESLK-------RRISDLEDEILELMERIEE---LEEELAELEAELAELE 137
|
170 180
....*....|....*....|....*..
gi 442625671 492 TELEAKT----EKEKEIQQKMEELQKA 514
Cdd:COG1579 138 AELEEKKaeldEELAELEAELEELEAE 164
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
330-513 |
2.92e-04 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 44.25 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 330 EQKIQELQTRLQQVETEEQGHREELIRKENIHTaRLAEANQREQDL----IDRVKSLTKELNTLKANKEHNERDLRDRLA 405
Cdd:pfam05701 218 EQDKLNWEKELKQAEEELQRLNQQLLSAKDLKS-KLETASALLLDLkaelAAYMESKLKEEADGEGNEKKTSTSIQAALA 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 406 LSQDEISVLRTSSqrrspctslpDNASAELNRLTSEADSLRcvlelkqaeiSALSKAKADLIHESEERLKLSNRVALLEA 485
Cdd:pfam05701 297 SAKKELEEVKANI----------EKAKDEVNCLRVAAASLR----------SELEKEKAELASLRQREGMASIAVSSLEA 356
|
170 180
....*....|....*....|....*...
gi 442625671 486 QNEMLRTELEAKTEKEKEIQQKMEELQK 513
Cdd:pfam05701 357 ELNRTKSEIALVQAKEKEAREKMVELPK 384
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
209-526 |
3.23e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.65 E-value: 3.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 209 ELDAVACKENKHQCARTK-GTLEKTILLLQHTQKDCERLREDLEDKGLEWIQRQQEK----EYLHRTELKQAEEKLMEVQ 283
Cdd:TIGR00606 246 ELDPLKNRLKEIEHNLSKiMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQlndlYHNHQRTVREKERELVDCQ 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 284 lraklKFCELESQLRAKDEESKQAQEAYRMEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHRE-------ELIR 356
Cdd:TIGR00606 326 -----RELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSErqiknfhTLVI 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 357 KENIHTARLAeaNQREQDLIDRVKSLTKELNTLKANKEHNERDLRDRLALSQDEISVLRTSSQRRSpctslpdNASAELN 436
Cdd:TIGR00606 401 ERQEDEAKTA--AQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQ-------QLEGSSD 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 437 RLTSEADSLRCVL-ELKQAEISALSKA-KADLIHESEERLKLSNRVALLEAQNEMLRTELEAKTEKEKEIQQKMEELQKA 514
Cdd:TIGR00606 472 RILELDQELRKAErELSKAEKNSLTETlKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQI 551
|
330
....*....|..
gi 442625671 515 YKYESIKRTRLT 526
Cdd:TIGR00606 552 RKIKSRHSDELT 563
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
284-514 |
3.80e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 3.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 284 LRAKLKfcELESQLRAKDEESKQAQEAyRMEVSHKLAL---KQEHLRTAEQKIQELQTRLQQVETEEQGHREELirkeNI 360
Cdd:PRK02224 211 LESELA--ELDEEIERYEEQREQARET-RDEADEVLEEheeRREELETLEAEIEDLRETIAETEREREELAEEV----RD 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 361 HTARLAEANQREQDLIDRVKSLTKELNTLKANKEhnerDLRDRLALSQDEISVLRTSSQR-RSPCTSLPDNASA------ 433
Cdd:PRK02224 284 LRERLEELEEERDDLLAEAGLDDADAEAVEARRE----ELEDRDEELRDRLEECRVAAQAhNEEAESLREDADDleerae 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 434 ----ELNRLTSEADSLRCVLELKQAEISALSKAkadlIHESEERLKLSNrVAL--LEAQNEMLRTELEAKTEKEKEIQQK 507
Cdd:PRK02224 360 elreEAAELESELEEAREAVEDRREEIEELEEE----IEELRERFGDAP-VDLgnAEDFLEELREERDELREREAELEAT 434
|
....*..
gi 442625671 508 MEELQKA 514
Cdd:PRK02224 435 LRTARER 441
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
236-551 |
4.13e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 4.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 236 LQHTQKDCERLREDL--EDKGLEwIQRQQEKEYLHRTELKQAEEKLMEVQLraklkfCELESQLRAKdeeskqaqeayRM 313
Cdd:pfam15921 543 LRNVQTECEALKLQMaeKDKVIE-ILRQQIENMTQLVGQHGRTAGAMQVEK------AQLEKEINDR-----------RL 604
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 314 EVSHKLALKQEHlrtaEQKIQELQTRLQQVETEeqghREELIRKENIHTARLAEANQREQDLIDRVKSLTKELNTLKANK 393
Cdd:pfam15921 605 ELQEFKILKDKK----DAKIRELEARVSDLELE----KVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDY 676
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 394 EHNERDLRDRLalSQDEISVLRTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVLEL------KQAEISALsKAKADLI 467
Cdd:pfam15921 677 EVLKRNFRNKS--EEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMqkqitaKRGQIDAL-QSKIQFL 753
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 468 HES------------EERLKLSNRVALLEAQNEMLRTELEAKTEKEKEIQQKMEELQKAykyesikrtrltYDKEELQYH 535
Cdd:pfam15921 754 EEAmtnankekhflkEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVA------------LDKASLQFA 821
|
330
....*....|....*....
gi 442625671 536 LKQRSLQLQSAES---KLQ 551
Cdd:pfam15921 822 ECQDIIQRQEQESvrlKLQ 840
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
242-485 |
6.90e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.49 E-value: 6.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 242 DCERLREDLEDKgLEWIQRQQEK--EYLHRTE-LKQAEEKLMEVQLRAKLkFCELESQLRAKDEESKQAQEAYRMEVSH- 317
Cdd:PRK02224 472 EDRERVEELEAE-LEDLEEEVEEveERLERAEdLVEAEDRIERLEERRED-LEELIAERRETIEEKRERAEELRERAAEl 549
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 318 --KLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIRKENIHT--ARLAEANQREQDLIDRVKSLTkELNTLKANK 393
Cdd:PRK02224 550 eaEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTllAAIADAEDEIERLREKREALA-ELNDERRER 628
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 394 EHNERDLRDRLALSQDEiSVLRTSSQRRSPCTSLPDNASAELNRLTSEADSLrcvlelkQAEISALSKAKADLIHESEER 473
Cdd:PRK02224 629 LAEKRERKRELEAEFDE-ARIEEAREDKERAEEYLEQVEEKLDELREERDDL-------QAEIGAVENELEELEELRERR 700
|
250
....*....|..
gi 442625671 474 LKLSNRVALLEA 485
Cdd:PRK02224 701 EALENRVEALEA 712
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
326-511 |
7.05e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 7.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 326 LRTAEQKIQELQTRLQQVETEEQGHREELIR-KENIHTAR--LAEANQ-REQDLIDRVKSLTKELNTLKANKEHNERDlR 401
Cdd:COG3096 838 LAALRQRRSELERELAQHRAQEQQLRQQLDQlKEQLQLLNklLPQANLlADETLADRLEELREELDAAQEAQAFIQQH-G 916
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 402 DRLALSQDEISVLRTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQA-----------EISALS-KAKADLIHE 469
Cdd:COG3096 917 KALAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHfsyedavgllgENSDLNeKLRARLEQA 996
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 442625671 470 SEERLKLsnRVALLEAQNEM---------LRTELEAKTEKEKEIQQKMEEL 511
Cdd:COG3096 997 EEARREA--REQLRQAQAQYsqynqvlasLKSSRDAKQQTLQELEQELEEL 1045
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
165-552 |
8.64e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 8.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 165 KPFTENGELDCARLAKFFQDTQFERKEEQRQILGLSVMVQFMSKELDavackenKHQCARTKGTLEK------TILLLQH 238
Cdd:TIGR00618 141 KTFTRVVLLPQGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFA-------KKKSLHGKAELLTlrsqllTLCTPCM 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 239 TQKDCERLR--EDLEDKGLEWIQRQQEKEYLHRTELKQAEEKLMEVQ----LRAKLKfcELESQLRAKDEESK------- 305
Cdd:TIGR00618 214 PDTYHERKQvlEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQllkqLRARIE--ELRAQEAVLEETQErinrark 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 306 -------------------------QAQEAYRMEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIRKENI 360
Cdd:TIGR00618 292 aaplaahikavtqieqqaqrihtelQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREIS 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 361 H-----TARLAEANQREQDLIDRVKSLTKELNTLKAN------KEHNERDLRDRLA-------LSQDEISVLRTSSQRRS 422
Cdd:TIGR00618 372 CqqhtlTQHIHTLQQQKTTLTQKLQSLCKELDILQREqatidtRTSAFRDLQGQLAhakkqqeLQQRYAELCAAAITCTA 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 423 PCTSLPDNASAELNRLTSEADSLRCVLE---LKQAEISALSKAKADLIHESEERLK------------------------ 475
Cdd:TIGR00618 452 QCEKLEKIHLQESAQSLKEREQQLQTKEqihLQETRKKAVVLARLLELQEEPCPLCgscihpnparqdidnpgpltrrmq 531
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442625671 476 -LSNRVALLEAQNEMLRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQyHLKQRSLQLQSAESKLQD 552
Cdd:TIGR00618 532 rGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQ-NITVRLQDLTEKLSEAED 608
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
329-554 |
8.79e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 8.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 329 AEQKIQELQTRLQQVETEEQGHREELIRKENIHtARLAEANQREQDLIDRVKSLTKELNTLKANKEHNERDLRDRLALSQ 408
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKL-QELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 409 DEisvLRTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEISALSKAKADlihESEERLKLSNRVALLEAQNE 488
Cdd:pfam02463 244 EL---LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEE---LKSELLKLERRKVDDEEKLK 317
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442625671 489 MLRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESKLQDLS 554
Cdd:pfam02463 318 ESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLES 383
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
236-552 |
1.02e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 236 LQHTQKDCERLREDLEdkglewiqRQQEKEYLHRTELKQAEEKLMEVQLRAKLkfcelesQLRAKDEESKQAQEAYRM-- 313
Cdd:TIGR00606 753 LQKVNRDIQRLKNDIE--------EQETLLGTIMPEEESAKVCLTDVTIMERF-------QMELKDVERKIAQQAAKLqg 817
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 314 --------EVSHKLALKQEHLRTAEQKIQELQtRLQQVETEEQGHREELIRKENIHTARLAEANQREQDLIDRVKSLTKE 385
Cdd:TIGR00606 818 sdldrtvqQVNQEKQEKQHELDTVVSKIELNR-KLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTE 896
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 386 LNTL-KANKEHNERDLRDRLALSQD----EISVLRTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEISALS 460
Cdd:TIGR00606 897 VQSLiREIKDAKEQDSPLETFLEKDqqekEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKE 976
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 461 KAKADLIHESEERLKLSNRVallEAQNEMLRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQyhlkQRS 540
Cdd:TIGR00606 977 TELNTVNAQLEECEKHQEKI---NEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQ----MQV 1049
|
330
....*....|..
gi 442625671 541 LQLQSAESKLQD 552
Cdd:TIGR00606 1050 LQMKQEHQKLEE 1061
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
244-553 |
1.13e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 244 ERLREDLEDKGLEWIQRQQEK-EYL---HRTELKQAEEKLMEVQLRAKlkfcELESQLRAKDEESKQAQEAYRME----- 314
Cdd:pfam15921 248 EALKSESQNKIELLLQQHQDRiEQLiseHEVEITGLTEKASSARSQAN----SIQSQLEIIQEQARNQNSMYMRQlsdle 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 315 --VSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREElirkenihtarLAEANQREQDLIDRVKSLTKELNT---- 388
Cdd:pfam15921 324 stVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTE-----------RDQFSQESGNLDDQLQKLLADLHKreke 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 389 LKANKEHNERdLRDRLALSQDEISVLRTssqrrspctslpdnasaELNRLTSEADSLRCVLELKQAEISALSKAKADLIH 468
Cdd:pfam15921 393 LSLEKEQNKR-LWDRDTGNSITIDHLRR-----------------ELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQ 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 469 ESEERL-KLSNRVALLEAQNEMLRTELEAKTEKEKEIQ-------------QKMEELQKAYKYESIK-RTRLTYDKEELQ 533
Cdd:pfam15921 455 GKNESLeKVSSLTAQLESTKEMLRKVVEELTAKKMTLEssertvsdltaslQEKERAIEATNAEITKlRSRVDLKLQELQ 534
|
330 340
....*....|....*....|
gi 442625671 534 yHLKQRSLQLQSAESKLQDL 553
Cdd:pfam15921 535 -HLKNEGDHLRNVQTECEAL 553
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
228-584 |
1.28e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.52 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 228 TLEKTILLLQHTQKdcerlredledkglewiqrqqekeylhrtELKQAEEKLMEVQLRAKLKFCELESQLRAKDEESKQA 307
Cdd:pfam12128 252 TLESAELRLSHLHF-----------------------------GYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEK 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 308 QEAYRMEVS---HKLALKQEHLRTAE-QKIQELQTRLQQVETEEQghREELIRKEnihtarLAEANQREQDLIDRVKSLT 383
Cdd:pfam12128 303 RDELNGELSaadAAVAKDRSELEALEdQHGAFLDADIETAAADQE--QLPSWQSE------LENLEERLKALTGKHQDVT 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 384 KELNTLKAN-KEHNERDL---RDRLALSQDEISVLRT--SSQRRSPCTSLPDNASAELNRLTSEADSLrcvlelkqaeIS 457
Cdd:pfam12128 375 AKYNRRRSKiKEQNNRDIagiKDKLAKIREARDRQLAvaEDDLQALESELREQLEAGKLEFNEEEYRL----------KS 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 458 ALSKAK---ADLIHESEERLKLSNRVALLEAQNEmlrtELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQY 534
Cdd:pfam12128 445 RLGELKlrlNQATATPELLLQLENFDERIERARE----EQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQS 520
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 442625671 535 HLKQRSLQL-QSAESKLQDLSTGSHDNSLSSH---SRCSLGRSGLEIAVTTSSP 584
Cdd:pfam12128 521 ALDELELQLfPQAGTLLHFLRKEAPDWEQSIGkviSPELLHRTDLDPEVWDGSV 574
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
262-528 |
1.34e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 41.82 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 262 QEKEYLHRTELKQAEEKLMEVQ-----LRAKLKfcELESQLRAKDEESKQAQEAYRmEVSHKLALKQEHLRTAEQKIQEL 336
Cdd:COG1340 14 EEKIEELREEIEELKEKRDELNeelkeLAEKRD--ELNAQVKELREEAQELREKRD-ELNEKVKELKEERDELNEKLNEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 337 QTRLQQVETEeqgHREELIRKENIHT-----ARLAEANQ-------REQDLIDRVKSLTKELNTLKANKEHNErDLRDRL 404
Cdd:COG1340 91 REELDELRKE---LAELNKAGGSIDKlrkeiERLEWRQQtevlspeEEKELVEKIKELEKELEKAKKALEKNE-KLKELR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 405 ALSQDEISVLRTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEISALSKaKADLIHesEERLKLSNRVALLE 484
Cdd:COG1340 167 AELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQE-KADELH--EEIIELQKELRELR 243
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 442625671 485 AQNEMLRTELEA--KTEKEKEIQQKMEELqkaykYESIKRT-RLTYD 528
Cdd:COG1340 244 KELKKLRKKQRAlkREKEKEELEEKAEEI-----FEKLKKGeKLTTE 285
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
257-551 |
1.37e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 257 WIQRQQEKEYLHRTELKQAEEKLMEVQL--RAKLKFCELESQLrakdeESKQAQEAYRMEVSHKLALKQEHLRTAEQKIQ 334
Cdd:TIGR00606 184 YIKALETLRQVRQTQGQKVQEHQMELKYlkQYKEKACEIRDQI-----TSKEAQLESSREIVKSYENELDPLKNRLKEIE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 335 ELQTRLQQVETEEQGHREELIRKENIHTarlaeanQREQDLIDRVKSLTKELNTLKANKEHNERDLRDRLALSQDEISVL 414
Cdd:TIGR00606 259 HNLSKIMKLDNEIKALKSRKKQMEKDNS-------ELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKL 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 415 RTSSQrrspctslpdnasaELNRLTSEADSLRCVLELKQAEISALSKAKADLIHESEERLKLSN--RVALLEAQ-NEMLR 491
Cdd:TIGR00606 332 NKERR--------------LLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGfeRGPFSERQiKNFHT 397
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 492 TELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESKLQ 551
Cdd:TIGR00606 398 LVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELK 457
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
244-551 |
1.72e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.03 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 244 ERLREDLEDKGLEwIQRQQEKEYLHRTELKQAEEKLMeVQLRAKLKFCELESQLRAKDEESKQAQEayrmEVSHKLALKQ 323
Cdd:pfam15921 415 DHLRRELDDRNME-VQRLEALLKAMKSECQGQMERQM-AAIQGKNESLEKVSSLTAQLESTKEMLR----KVVEELTAKK 488
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 324 EHLRTAEQKIQELQTRLQQVETEEQGHREELIRKENIHTARLAEAnQREQDLIDRVKSLTKELNTLKAnkEHNERDLRDR 403
Cdd:pfam15921 489 MTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQEL-QHLKNEGDHLRNVQTECEALKL--QMAEKDKVIE 565
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 404 LALSQDEISVLRTSSQRRSPCTSLPDNAS--AELNRLTSEADSLRCVLELKQAEISALSKAKADLIHEseerlklsnRVA 481
Cdd:pfam15921 566 ILRQQIENMTQLVGQHGRTAGAMQVEKAQleKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELE---------KVK 636
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 482 LLEAQNEMLRTEleaktekeKEIQQKMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESKLQ 551
Cdd:pfam15921 637 LVNAGSERLRAV--------KDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLK 698
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
298-555 |
2.23e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 41.67 E-value: 2.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 298 RAKDEESKQAQEAY-RMEVSHKLALKQEHLRTAEQKIQELQTRlQQVETEEQGHREELIRKE--------NIHTARLAEA 368
Cdd:pfam09731 114 EAKAQLPKSEQEKEkALEEVLKEAISKAESATAVAKEAKDDAI-QAVKAHTDSLKEASDTAEisrekatdSALQKAEALA 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 369 NQREQDLIDRVKSLTKELNTLKANKEHNERDLRDRL-------------ALSQDEISVLRTSS--QRRSPCTSLPDNASA 433
Cdd:pfam09731 193 EKLKEVINLAKQSEEEAAPPLLDAAPETPPKLPEHLdnveekvekaqslAKLVDQYKELVASEriVFQQELVSIFPDIIP 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 434 ELNRLT-SEADSLRCVLELKQAEISALSKAKADLIHESEERLK--LSNRVALLEAQNEMLRTELEAKTEKEK-----EIQ 505
Cdd:pfam09731 273 VLKEDNlLSNDDLNSLIAHAHREIDQLSKKLAELKKREEKHIEraLEKQKEELDKLAEELSARLEEVRAADEaqlrlEFE 352
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 442625671 506 QKMEELQKayKYESIKRTRLTYDKEELQYHLKQRsLQLQSAESK---LQDLST 555
Cdd:pfam09731 353 REREEIRE--SYEEKLRTELERQAEAHEEHLKDV-LVEQEIELQrefLQDIKE 402
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
112-553 |
2.61e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.36 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 112 QEQEASGQVKEATITTANEPNALSLPDEISNSVSSTTMlatprvDIAAQYPVLKPFTENGELDCARLAKFFQDTQFERKE 191
Cdd:pfam12128 271 ETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNG------ELSAADAAVAKDRSELEALEDQHGAFLDADIETAAA 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 192 EQRQILGLSVMVQFMSKELDAVACKENKHQcartkgtlEKTILLLQHTQKDCERLREDLE---DKGLEWIQRQQEKEYLH 268
Cdd:pfam12128 345 DQEQLPSWQSELENLEERLKALTGKHQDVT--------AKYNRRRSKIKEQNNRDIAGIKdklAKIREARDRQLAVAEDD 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 269 RTELKQAEEKLMEVQLRaKLKFCELESQLRAKDEESKQAQEAYRMEVSHKLALKQ---EHLRTAEQKIQELQTRLQQVET 345
Cdd:pfam12128 417 LQALESELREQLEAGKL-EFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDeriERAREEQEAANAEVERLQSELR 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 346 EEQGHREELIRKENIHTARLAEANQR----EQDLIDRVKSLTKELNTLKANKEHNERDLRDRLALSQDEISVLRTSSQrr 421
Cdd:pfam12128 496 QARKRRDQASEALRQASRRLEERQSAldelELQLFPQAGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGS-- 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 422 spctslpdnASAELN----RLTSEADSLRCVLELKQAEISALSKAKADLIHESEerlklsnRVALLEAQNEMLRTELEak 497
Cdd:pfam12128 574 ---------VGGELNlygvKLDLKRIDVPEWAASEEELRERLDKAEEALQSARE-------KQAAAEEQLVQANGELE-- 635
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 442625671 498 tekekEIQQKMEELQKAYKYESIKRTRLTYDKEELQYHL-KQRSLQLQSAESKLQDL 553
Cdd:pfam12128 636 -----KASREETFARTALKNARLDLRRLFDEKQSEKDKKnKALAERKDSANERLNSL 687
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
264-554 |
3.17e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 264 KEYLHRTELKQAEEKLMEVQLRAKLKFCELESQLRAKD--EESKQAQEAYRMEVSHKLALKQEHLRTAEQKIQELQTRLQ 341
Cdd:PRK03918 152 RQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTEniEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 342 QVETeeqgHREELIRKENihtarlaeanqreqdlidRVKSLTKELNTLKANKehneRDLRDRLALSQDEISVLRtsSQRR 421
Cdd:PRK03918 232 ELEE----LKEEIEELEK------------------ELESLEGSKRKLEEKI----RELEERIEELKKEIEELE--EKVK 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 422 spctslpdnasaELNRLTSEADSLRcvlelkqaEISALSKAKADLIHESEERL-KLSNRVALLEAQNEmlrtELEAKTEK 500
Cdd:PRK03918 284 ------------ELKELKEKAEEYI--------KLSEFYEEYLDELREIEKRLsRLEEEINGIEERIK----ELEEKEER 339
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 442625671 501 EKEIQQKMEELQKayKYESIKRTRLTYDKeelqyhLKQRSLQLQSAESKLQDLS 554
Cdd:PRK03918 340 LEELKKKLKELEK--RLEELEERHELYEE------AKAKKEELERLKKRLTGLT 385
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
215-533 |
3.19e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 3.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 215 CKENKHQCARTKGTLEKTILLLQHTQKDCERLREDLEDKGLEWIQRQQEKEYLHR--TELKQAEEKLMEvQLRAKLKFCE 292
Cdd:PRK02224 225 YEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEevRDLRERLEELEE-ERDDLLAEAG 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 293 LESQLRAKDEESKQAQEAYRMEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIRKEN-IHTARLAEANQR 371
Cdd:PRK02224 304 LDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESeLEEAREAVEDRR 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 372 EQ--DLIDRVKSLTKELNTLKANKEhnerDLRDRLALSQDEISVLRTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVL 449
Cdd:PRK02224 384 EEieELEEEIEELRERFGDAPVDLG----NAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQ 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 450 ELKQAEIsalskakADLIHESEERL-KLSNRVALLEAQNEMLR---TELEAKTEKEKEIQQKMEELQKAYKYESIKRTRL 525
Cdd:PRK02224 460 PVEGSPH-------VETIEEDRERVeELEAELEDLEEEVEEVEerlERAEDLVEAEDRIERLEERREDLEELIAERRETI 532
|
....*...
gi 442625671 526 TYDKEELQ 533
Cdd:PRK02224 533 EEKRERAE 540
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
228-550 |
3.20e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.66 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 228 TLEKTILLLQHTQKDCERLREDLEDKGLEwIQRQQEKEYLHRTELKQAEEKLMevqlraklkfcELESQLRAKDEESKQA 307
Cdd:COG4372 32 QLRKALFELDKLQEELEQLREELEQAREE-LEQLEEELEQARSELEQLEEELE-----------ELNEQLQAAQAELAQA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 308 QEayrmevshKLALKQEHLRTAEQKIQELQTRLQQVETEEQ---GHREELIRKENIHTARLAEANQREQDLIDRVKSLTK 384
Cdd:COG4372 100 QE--------ELESLQEEAEELQEELEELQKERQDLEQQRKqleAQIAELQSEIAEREEELKELEEQLESLQEELAALEQ 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 385 ELNTLKanKEHNERDLRDRLALSQDEISVLRTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEISALSKAKA 464
Cdd:COG4372 172 ELQALS--EAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKE 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 465 DLIHESEERLKLSNRVALLEAQNEMLRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQ 544
Cdd:COG4372 250 ELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLE 329
|
....*.
gi 442625671 545 SAESKL 550
Cdd:COG4372 330 LALAIL 335
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
270-514 |
3.22e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 3.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 270 TELKQAEEKLMEVQLRAKLKFCELESQLRAKDEESKQAQEAYRME-----VSHKLALKQEHLRTAEQKIQELQTRLQQVE 344
Cdd:PRK02224 471 EEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEerredLEELIAERRETIEEKRERAEELRERAAELE 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 345 TEEQGHREElirkenihtarLAEANQREQDLIDRVKSLTKELNTLKankehNERDLRDRLALSQDEIsvlrtssqrrspc 424
Cdd:PRK02224 551 AEAEEKREA-----------AAEAEEEAEEAREEVAELNSKLAELK-----ERIESLERIRTLLAAI------------- 601
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 425 tslpDNASAELNRLTSEADSLRCVLELKQAEISALSKAKADLIHESEErlklsNRVALLEAQNEMLRTELEAKTEKEKEI 504
Cdd:PRK02224 602 ----ADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDE-----ARIEEAREDKERAEEYLEQVEEKLDEL 672
|
250
....*....|
gi 442625671 505 QQKMEELQKA 514
Cdd:PRK02224 673 REERDDLQAE 682
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
176-386 |
5.12e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 5.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 176 ARLAKFFQDTQFERKEEQRQILGLSVMVQFMSKELdavacKENKHQCARTKGTLEKTILLLQHTQKDCERLREDLEDKgL 255
Cdd:COG4942 37 AELEKELAALKKEEKALLKQLAALERRIAALARRI-----RALEQELAALEAELAELEKEIAELRAELEAQKEELAEL-L 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 256 EWIQRQQEKEY----LHRTELKQAEEKLMEVQlraklkfcELESQLRAKDEESKQAQEAYRmEVSHKLALKQEHLRTAEQ 331
Cdd:COG4942 111 RALYRLGRQPPlallLSPEDFLDAVRRLQYLK--------YLAPARREQAEELRADLAELA-ALRAELEAERAELEALLA 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 442625671 332 KIQELQTRLQQVETEEQGHREELIRKENIHTARLAEANQREQDLIDRVKSLTKEL 386
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
271-549 |
5.66e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 5.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 271 ELKQAEEKLMEVQLRAKLKFCELESQLRAKDEESKQAQEAYRMEVSHK-----LALKQEHLRTAEQKIQELQTRLQQVET 345
Cdd:PTZ00121 1294 EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAkkaaeAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 346 EEQGHREELIRK--ENIHTA----RLAEANQREQDLIDRVKSLTKELNTLKANKEHNER-DLRDRLALSQDEISVLRTSS 418
Cdd:PTZ00121 1374 EEAKKKADAAKKkaEEKKKAdeakKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKaDEAKKKAEEAKKADEAKKKA 1453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 419 QRRSPCTSLPDNA--SAELNRLTSEADSLRCVLELKQAEISAlsKAKADLIHESEERLKLSNRVALLEAQ---NEMLRTE 493
Cdd:PTZ00121 1454 EEAKKAEEAKKKAeeAKKADEAKKKAEEAKKADEAKKKAEEA--KKKADEAKKAAEAKKKADEAKKAEEAkkaDEAKKAE 1531
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442625671 494 LEAKTE--KEKEIQQKMEELQKA---YKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESK 549
Cdd:PTZ00121 1532 EAKKADeaKKAEEKKKADELKKAeelKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
296-553 |
6.41e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 39.89 E-value: 6.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 296 QLRAKDEESKQAQEAYRMEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIRKEnihtARLAEANQREQDL 375
Cdd:COG4372 3 RLGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLE----EELEQARSELEQL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 376 IDRVKSLTKELNTLKANKEhnerDLRDRLALSQDEISVLRTSSQRRSpctSLPDNASAELNRLTSEADSLRCVLELKQAE 455
Cdd:COG4372 79 EEELEELNEQLQAAQAELA----QAQEELESLQEEAEELQEELEELQ---KERQDLEQQRKQLEAQIAELQSEIAEREEE 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 456 ISALSKAKADLIHESEERLKLSNRVALLEAQNEMLRTELEAKTEKEKEIQQKMEELQKAYKYESIKRTRLTYDKEELQYH 535
Cdd:COG4372 152 LKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKL 231
|
250
....*....|....*...
gi 442625671 536 LKQRSLQLQSAESKLQDL 553
Cdd:COG4372 232 GLALSALLDALELEEDKE 249
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
244-408 |
6.64e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 6.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 244 ERLREDLEDKGLEWIQRQQEKEYLH--RTELKQAEEKLMEVQLRAKLKFcelESQLRAKDEESKQAQEAYRMEVsHKLAL 321
Cdd:TIGR00618 704 TLLRELETHIEEYDREFNEIENASSslGSDLAAREDALNQSLKELMHQA---RTVLKARTEAHFNNNEEVTAAL-QTGAE 779
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 322 KQEHLRTAEQKIQELQTRLQQVETEEQGHREELIRKENIHTARLAEANQREQDLIDRVKSLTKELNTLKANKEHNERDLR 401
Cdd:TIGR00618 780 LSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSK 859
|
....*..
gi 442625671 402 DRLALSQ 408
Cdd:TIGR00618 860 QLAQLTQ 866
|
|
| DUF4686 |
pfam15742 |
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ... |
208-507 |
6.71e-03 |
|
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.
Pssm-ID: 464838 [Multi-domain] Cd Length: 384 Bit Score: 39.66 E-value: 6.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 208 KELDAVACKENKHQCARTKGTLEKtilLLQHTQ---------KDCERLREDLEDKGLEWIQRQQEKEYLH------RTEL 272
Cdd:pfam15742 47 KQHNSLLQEENIKIKAELKQAQQK---LLDSTKmcssltaewKHCQQKIRELELEVLKQAQSIKSQNSLQeklaqeKSRV 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 273 KQAEEKLMEVQ--LRAKLKFCELESQLRAKD---EESKQAQEayrmevshklalKQEHLRTAEQKIQELQTRLQQVETEE 347
Cdd:pfam15742 124 ADAEEKILELQqkLEHAHKVCLTDTCILEKKqleERIKEASE------------NEAKLKQQYQEEQQKRKLLDQNVNEL 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 348 QGHREELIRKENIHTARLAEANQREQDLIDRVKSLTKELNTLKANKEHNeRDLRDRLALSQDEISVLRTssqrrspctsl 427
Cdd:pfam15742 192 QQQVRSLQDKEAQLEMTNSQQQLRIQQQEAQLKQLENEKRKSDEHLKSN-QELSEKLSSLQQEKEALQE----------- 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625671 428 pdnasaELNRLTSEADSLRCVLELKQAEISA-LSKAKADLIHESEERLKlsnRVALLEAQNEMLRTeleaKTEKEKEIQQ 506
Cdd:pfam15742 260 ------ELQQVLKQLDVHVRKYNEKHHHHKAkLRRAKDRLVHEVEQRDE---RIKQLENEIGILQQ----QSEKEKAFQK 326
|
.
gi 442625671 507 K 507
Cdd:pfam15742 327 Q 327
|
|
| |
