NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|403225001|ref|NP_001258110|]
View 

OCIA domain-containing protein 2 [Rattus norvegicus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
OCIA super family cl06199
Ovarian carcinoma immunoreactive antigen (OCIA); This family consists of several ovarian ...
 33-117 6.28e-33

Ovarian carcinoma immunoreactive antigen (OCIA); This family consists of several ovarian carcinoma immunoreactive antigen (OCIA) and related eukaryotic sequences. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam07051:

Pssm-ID: 462073  Cd Length: 87  Bit Score: 111.62  E-value: 6.28e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403225001   33 HIHRGEIAKIIRECQEESFWKRALPFSLISMLVTQGLVHQGYLAANPRFGSLPKVALAGLLGFGLGKASYIRVCQSKFHS 112
Cdd:pfam07051   3 YIFSEEERKVLRECNEESFWQRSLPLSLMSGLVTYALVNKGYLSSSPRFGALPKVVFAGLLGYFGGKLSYQKCCAEKFMR 82


                  ....*
gi 403225001  113 FEDQL 117
Cdd:pfam07051  83 LPNSP 87
 
Name Accession Description Interval E-value
OCIA pfam07051
Ovarian carcinoma immunoreactive antigen (OCIA); This family consists of several ovarian ...
 33-117 6.28e-33

Ovarian carcinoma immunoreactive antigen (OCIA); This family consists of several ovarian carcinoma immunoreactive antigen (OCIA) and related eukaryotic sequences. The function of this family is unknown.


Pssm-ID: 462073  Cd Length: 87  Bit Score: 111.62  E-value: 6.28e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403225001   33 HIHRGEIAKIIRECQEESFWKRALPFSLISMLVTQGLVHQGYLAANPRFGSLPKVALAGLLGFGLGKASYIRVCQSKFHS 112
Cdd:pfam07051   3 YIFSEEERKVLRECNEESFWQRSLPLSLMSGLVTYALVNKGYLSSSPRFGALPKVVFAGLLGYFGGKLSYQKCCAEKFMR 82


                  ....*
gi 403225001  113 FEDQL 117
Cdd:pfam07051  83 LPNSP 87
 
Name Accession Description Interval E-value
OCIA pfam07051
Ovarian carcinoma immunoreactive antigen (OCIA); This family consists of several ovarian ...
 33-117 6.28e-33

Ovarian carcinoma immunoreactive antigen (OCIA); This family consists of several ovarian carcinoma immunoreactive antigen (OCIA) and related eukaryotic sequences. The function of this family is unknown.


Pssm-ID: 462073  Cd Length: 87  Bit Score: 111.62  E-value: 6.28e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403225001   33 HIHRGEIAKIIRECQEESFWKRALPFSLISMLVTQGLVHQGYLAANPRFGSLPKVALAGLLGFGLGKASYIRVCQSKFHS 112
Cdd:pfam07051   3 YIFSEEERKVLRECNEESFWQRSLPLSLMSGLVTYALVNKGYLSSSPRFGALPKVVFAGLLGYFGGKLSYQKCCAEKFMR 82


                  ....*
gi 403225001  113 FEDQL 117
Cdd:pfam07051  83 LPNSP 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH