|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
326-1247 |
3.22e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.64 E-value: 3.22e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 326 EEKRCKLEDEVFYLKEKVREIQTQNKWRearnKTDIAVKRLSAEIaasvpnipeNEMSKELrDALEREIDLREQMRFSEE 405
Cdd:TIGR02168 155 EERRAIFEEAAGISKYKERRKETERKLE----RTRENLDRLEDIL---------NELERQL-KSLERQAEKAERYKELKA 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 406 DLKRTQIRLQ--DVENENEELLKKLSKASKLRPPMIRSASDGNA-HLQLELAESQVQHLNTKIERLEKTNDHLNKKIVEL 482
Cdd:TIGR02168 221 ELRELELALLvlRLEELREELEELQEELKEAEEELEELTAELQElEEKLEELRLEVSELEEEIEELQKELYALANEISRL 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 483 EADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISELErknlELTTQVKQLETKVTPKPNfvvpsgttttELRKEQEK 562
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA----ELEEKLEELKEELESLEA----------ELEELEAE 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 563 RKALEAQVNELKtTVFKSDNQKVISLATKIEQLNGQLQMVNERCNTLHKKQvkdgeiqysDELKQKIEDLEKRLSEKLAI 642
Cdd:TIGR02168 367 LEELESRLEELE-EQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR---------ERLQQEIEELLKKLEEAELK 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 643 DSVSELQGKIPTIDEIEQCCEVL-AAVETQTGRLCKQFEKIDHAQKDERRRSLSKDSGAAIIAELANVMQEMKNVHQKLD 721
Cdd:TIGR02168 437 ELQAELEELEEELEELQEELERLeEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQS 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 722 KIKNVTPNTGLSVKRIPSKENLLEIKCSKCDQLQTSIDEQA--NEISFYKKKNKD-LTNQVLQTEDRWTIEIEK--QRQI 796
Cdd:TIGR02168 517 GLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAakKAIAFLKQNELGrVTFLPLDSIKGTEIQGNDreILKN 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 797 FEKEIKTLGIRVADAKRQNDELSELLeskSTTLVekTRSLEEQEERSKKLRAETELLRKDMQELETDKKTVKEFEikyKK 876
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPKLRKALSYLL---GGVLV--VDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSA---KT 668
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 877 LESIFETEREKmngERNRSKnelaaMKKLKDDAEEHLKKLSDDQKKNDAawkiekskLEKDIALLKKQLPDE----HEMK 952
Cdd:TIGR02168 669 NSSILERRREI---EELEEK-----IEELEEKIAELEKALAELRKELEE--------LEEELEQLRKELEELsrqiSALR 732
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 953 ESTATPQNSISGESSPLRRQDSEkmlVLELKKQISILEKRIADSNSSLEECKIQNAELRDQLAKVQANWEKDKEVFqhkT 1032
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKE---LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL---D 806
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1033 RKSEKLRTVEIDAMQQKFssRMRIMEDTNKALHSQLVLARRERDTNKDALTNFEKQVTDErnnlkvkEKSANESTEKVKE 1112
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRE--RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEL-------EELIEELESELEA 877
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1113 LQNRLTAKEEELERLNTDLrltkeaRKADQILWNIDRARNRNEkidntdsvetirkqyrdcetfysKEMDRLNDKITEIT 1192
Cdd:TIGR02168 878 LLNERASLEEALALLRSEL------EELSEELRELESKRSELR-----------------------RELEELREKLAQLE 928
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*.
gi 392927460 1193 AEKNRQKNEAQKTIRVLSEQIKVLEIEQKNLSQNKD-SQQVVKEMIESERERLQQI 1247
Cdd:TIGR02168 929 LRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEdDEEEARRRLKRLENKIKEL 984
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
445-1254 |
1.94e-14 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 79.01 E-value: 1.94e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 445 GNAHLQ--LELAESQVQHLNtkiERLEKTNDHLNKKIVELeadckRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISELE 522
Cdd:pfam15921 72 GKEHIErvLEEYSHQVKDLQ---RRLNESNELHEKQKFYL-----RQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDL 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 523 RKNLELTtqVKQLETKVTPKPNFVVPSGTTTTELRKEQEKRKALEaqvnelkttvfksdnQKVISLATKIEQLNGQLQMV 602
Cdd:pfam15921 144 RNQLQNT--VHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVL---------------QEIRSILVDFEEASGKKIYE 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 603 NERCNTLHKKQVKDGEIQYSDELKQKIEDLEKRL--SEKLAIDSVSELQGKIPTI-----DEIEQC-----------CEV 664
Cdd:pfam15921 207 HDSMSTMHFRSLGSAISKILRELDTEISYLKGRIfpVEDQLEALKSESQNKIELLlqqhqDRIEQLiseheveitglTEK 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 665 LAAVETQTGRLCKQFEKIDHAQKDERRRSLSKDSG-AAIIAELANVMQEMKNVHQklDKIKN-----VTPNTGLSVKRIp 738
Cdd:pfam15921 287 ASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDlESTVSQLRSELREAKRMYE--DKIEElekqlVLANSELTEART- 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 739 SKENLLEIKCSKCDQLQ---TSIDEQANEISFYKKKNKDLTNQVLQTedrwTIEIEKQRQIFEKEIKTLGIRVADAKRQN 815
Cdd:pfam15921 364 ERDQFSQESGNLDDQLQkllADLHKREKELSLEKEQNKRLWDRDTGN----SITIDHLRRELDDRNMEVQRLEALLKAMK 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 816 DELSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQEL-------ETDKKTVKEFEIKYKKLESIFETEREKM 888
Cdd:pfam15921 440 SECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELtakkmtlESSERTVSDLTASLQEKERAIEATNAEI 519
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 889 NGERNRSKNELAAMKKLKDDaEEHLKKLSDDQKkndaAWKIEKSKLEKDIALLKKQLPDEHEMKESTATPQNSISGESSP 968
Cdd:pfam15921 520 TKLRSRVDLKLQELQHLKNE-GDHLRNVQTECE----ALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQ 594
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 969 L------RRQDSEKMLVLELKKQISILEKRIADSNSSLEECKIQNAELRDQLAKVQANWEKDKEVFQHKTRKSE-KLRTV 1041
Cdd:pfam15921 595 LekeindRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNElNSLSE 674
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1042 EIDAMQQKFSSRMRIMEDTNKALHSQLVLARRErdtnkdaltnfekqVTDERNNLKVKEKSANESTEKVKELQNRLTAKE 1121
Cdd:pfam15921 675 DYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSE--------------LEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKR 740
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1122 EELERLNTDLRLTKEArkadqiLWNIDRARNrnekidntdsvetirkqyrdcetFYSKEMDRLNDKITEITAEKNRQKNE 1201
Cdd:pfam15921 741 GQIDALQSKIQFLEEA------MTNANKEKH-----------------------FLKEEKNKLSQELSTVATEKNKMAGE 791
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*...
gi 392927460 1202 AQ---KTIRVLSEQIKVLEIEQKNLS-QNKDSQQVV-KEMIESERERLQQIVHLNELQ 1254
Cdd:pfam15921 792 LEvlrSQERRLKEKVANMEVALDKASlQFAECQDIIqRQEQESVRLKLQHTLDVKELQ 849
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
561-1263 |
1.03e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.63 E-value: 1.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 561 EKRKALEAQVNELKTTVFKSDnqkVISLATKIEQLNGQLQMVNERCNTLH-KKQVKDGEIQ----YSDELKQKIEDLEKR 635
Cdd:TIGR02168 213 ERYKELKAELRELELALLVLR---LEELREELEELQEELKEAEEELEELTaELQELEEKLEelrlEVSELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 636 LSEKLAIdsVSELQGKIPTIDEieqcceVLAAVETQTGRLCKQFEKidhaqkDERRRSLSKDSGAAIIAELANVMQEMKN 715
Cdd:TIGR02168 290 LYALANE--ISRLEQQKQILRE------RLANLERQLEELEAQLEE------LESKLDELAEELAELEEKLEELKEELES 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 716 VHQKLDKIKNVTPNtglSVKRIPSKENLLEIKCSKCDQLQTSIDEQANEISFYKKKNKDL----TNQVLQTEDRWTIEIE 791
Cdd:TIGR02168 356 LEAELEELEAELEE---LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLedrrERLQQEIEELLKKLEE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 792 KQRQIFEKEIKTLGIRVADAKRQNDELSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETDKKTVKEFE 871
Cdd:TIGR02168 433 AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 872 IKYKKLESI-------------FETEREKMNGER---------NRSKNELAAMKK----------LKDDAEEHLKKLSDD 919
Cdd:TIGR02168 513 KNQSGLSGIlgvlselisvdegYEAAIEAALGGRlqavvvenlNAAKKAIAFLKQnelgrvtflpLDSIKGTEIQGNDRE 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 920 QKKN-----DAAWKIEKSKLEKDIAL------------LKKQLPDEHEMKES---------TATPQNSISGESsplrrqD 973
Cdd:TIGR02168 593 ILKNiegflGVAKDLVKFDPKLRKALsyllggvlvvddLDNALELAKKLRPGyrivtldgdLVRPGGVITGGS------A 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 974 SEKMLVLELKKQISILEKRIADSNSSLEECKIQNAELRDQLAKVQANWEKDKEVFQHKTRKSEKLRT--VEIDAMQQKFS 1051
Cdd:TIGR02168 667 KTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKdlARLEAEVEQLE 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1052 SRMRIMEDTNKALHSQLVLARRERDTNKDALtnfeKQVTDERNNLkvkEKSANESTEKVKELQNRLTAKEEELERLN--- 1128
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEEL----AEAEAEIEEL---EAQIEQLKEELKALREALDELRAELTLLNeea 819
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1129 TDLRLTKEARKADQILWNIDRARNRNEKIDNTDSVETIRKQYRDCETFYSKEMDRLnDKITEITAEKNRQKNEAQKTIRV 1208
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL-EALLNERASLEEALALLRSELEE 898
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*..
gi 392927460 1209 LSEQIKVLEIEQKNLSQNKDSQQvvkEMIESERERLQQI-VHLNELQ-KLTRKYRLS 1263
Cdd:TIGR02168 899 LSEELRELESKRSELRRELEELR---EKLAQLELRLEGLeVRIDNLQeRLSEEYSLT 952
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
156-939 |
2.70e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 2.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 156 QAEnQIQDYRDentvLKCELRELQETTFATSDEKLREKIRTTEGLCDELMEENEQLKAEVKDLQQEIEEMQDQYREEEIE 235
Cdd:TIGR02168 208 QAE-KAERYKE----LKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 236 EFRELQRELELNAK------NCRVLQFKLRKTERSRDQAEAEKMHSEKKLDEYMNSCpEAVAASIKSDSAKVKELEYEIR 309
Cdd:TIGR02168 283 IEELQKELYALANEisrleqQKQILRERLANLERQLEELEAQLEELESKLDELAEEL-AELEEKLEELKEELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 310 VAKEVSVRLHNELEQTEEKRCKLEDEVFYLKEKVREIQTQNKWREARnKTDIA--VKRLSAEIAASVPNIPENEMsKELR 387
Cdd:TIGR02168 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR-LERLEdrRERLQQEIEELLKKLEEAEL-KELQ 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 388 DALEREIDLREQMRFSEEDLKRTQIRLQDVENENEELLKKL--------SKASKLRPPMIRSASDGNAHLQLELAESQV- 458
Cdd:TIGR02168 440 AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAerelaqlqARLDSLERLQENLEGFSEGVKALLKNQSGLs 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 459 QHLNTKIERLEKTN-----------DHLNKKIVELEADCKRGgvTSAHSKAGEFKLTPEMEKDMSKMIVTISELERKN-- 525
Cdd:TIGR02168 520 GILGVLSELISVDEgyeaaieaalgGRLQAVVVENLNAAKKA--IAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKni 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 526 ---LELTTQVKQLETKVTPKPNF------VVPSGTTTTELRKEQEKRKALEAQVNELKTTVF------KSDNQKVISLAT 590
Cdd:TIGR02168 598 egfLGVAKDLVKFDPKLRKALSYllggvlVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGvitggsAKTNSSILERRR 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 591 KIEQLNGQLQMVNERCNTLHKKQvkdgeiqysDELKQKIEDLEKRLSEKlaidsvseLQGKIPTIDEIEQCCEVLAAVET 670
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKAL---------AELRKELEELEEELEQL--------RKELEELSRQISALRKDLARLEA 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 671 QTGRLCKQFEKIDHAQKD-ERRRSLSKDSGAAIIAELANVMQEMKNVHQKLDKIKNvtpntglsvkripskenlleikcs 749
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTElEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE------------------------ 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 750 KCDQLQTSIDEQANEISFYKKKNKDLTNQVLQTEDRwTIEIEKQRQIFEKEIKTLGIRVADAKRQNDELSELLESKSTTL 829
Cdd:TIGR02168 797 ELKALREALDELRAELTLLNEEAANLRERLESLERR-IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL 875
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 830 VEKTRSLEEQEERSKKLRAETELLRKDMQELEtdkKTVKEFEIKYKKLESIFETEREKMNGERNRSKNELAAMKKLKDDA 909
Cdd:TIGR02168 876 EALLNERASLEEALALLRSELEELSEELRELE---SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT 952
|
810 820 830
....*....|....*....|....*....|
gi 392927460 910 EEHLKKLSDDQKKNDAAWKIEKSKLEKDIA 939
Cdd:TIGR02168 953 LEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
106-474 |
4.07e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.85 E-value: 4.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 106 IQTLKEEISQLRDINHSLKEEKAQW-ALRQRLQNAEQSESSLINM--LEDRLNQAENQIQDYRDENTvlkcELRELQETt 182
Cdd:COG4913 619 LAELEEELAEAEERLEALEAELDALqERREALQRLAEYSWDEIDVasAEREIAELEAELERLDASSD----DLAALEEQ- 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 183 fatsDEKLREKIRTTEGLCDELMEENEQLKAEVKDLQQEIEEMQDQYREEEIEEFRELQRELE---LNAKNCRVLQFKLR 259
Cdd:COG4913 694 ----LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEerfAAALGDAVERELRE 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 260 KTERSRDQAEAEKMHSEKKLDEYMNSCPEAVAASIKSDSAKVKEL-EYEirvakevsvRLHNELEQTEekrckledevfy 338
Cdd:COG4913 770 NLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLpEYL---------ALLDRLEEDG------------ 828
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 339 LKEKvreiqtQNKWREARNKTDIA-VKRLSAEIAASVPNIpENEMsKELRDALereidlrEQMRFSEEdlKRTQIRLQDV 417
Cdd:COG4913 829 LPEY------EERFKELLNENSIEfVADLLSKLRRAIREI-KERI-DPLNDSL-------KRIPFGPG--RYLRLEARPR 891
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 392927460 418 ENENEELLKKlskasklrppMIRSASDGNAHLQLELAESQVQHLNTKIERLEKTNDH 474
Cdd:COG4913 892 PDPEVREFRQ----------ELRAVTSGASLFDEELSEARFAALKRLIERLRSEEEE 938
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
123-506 |
4.71e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 4.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 123 LKEEKAQwALRqRLQNAEQSesslINMLEDRLNQAENQI----------QDYRDentvLKCELRELQETTFATSDEKLRE 192
Cdd:COG1196 170 YKERKEE-AER-KLEATEEN----LERLEDILGELERQLeplerqaekaERYRE----LKEELKELEAELLLLKLRELEA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 193 KIRTTEGLCDELMEENEQLKAEVKDLQQEIEEMQDQYREEEIEEFRELQRELELNAkncrvlqfKLRKTERSRDQAEAEK 272
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA--------ELARLEQDIARLEERR 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 273 MHSEKKLDEYmnscpeavAASIKSDSAKVKELEYEIRVAKEVSVRLHNELEQTEEKRCKLEDEvfyLKEKVREIQTQNKW 352
Cdd:COG1196 312 RELEERLEEL--------EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA---LLEAEAELAEAEEE 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 353 REARNKTDIAVKRLSAEIAASvpnipENEMSKELRDALEREIDLREQMRFSEEDLKRTQIRLQDVENENEELLKKLSKAS 432
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQ-----LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 392927460 433 KLrppmIRSASDGNAHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPE 506
Cdd:COG1196 456 EE----EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
834-1199 |
9.55e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.47 E-value: 9.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 834 RSLEEQEERSKKLRAETELLRKDMQELETDKKTVKEFEIKYKKLESIFETER----EKMNGERNRSKNELAAMKKLKDDA 909
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELlkekEALERQKEAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 910 EEHLKKLSD-----DQKKNDAAWKIEKsKLEKDIALLKKQLpdehemkestatpqNSISGESSPLRRQDSEKMLVLE-LK 983
Cdd:TIGR02169 257 TEEISELEKrleeiEQLLEELNKKIKD-LGEEEQLRVKEKI--------------GELEAEIASLERSIAEKERELEdAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 984 KQISILEKRIADSNSSLEECKIQNAELRDQLAKVQANWEKDKEVFQHKTRKSEKLRTvEIDAMQQKFSSRMRIMEDTNKA 1063
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDK-EFAETRDELKDYREKLEKLKRE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1064 LHSqlvlARRERDTNKDALTNFEKQVTDERNNLKVKEKSANESTEKVKELQNRLTAKEEELERLNTDLrltkearkadqi 1143
Cdd:TIGR02169 401 INE----LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL------------ 464
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 392927460 1144 lwnidrarnrnekidntdsvETIRKQYRDCETFYSKEMDRLNDKITEITAEKNRQK 1199
Cdd:TIGR02169 465 --------------------SKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
106-725 |
3.73e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 3.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 106 IQTLKEEISQLRDinhSLKEEKAQW-ALRQRLQNAE---QSESSLINMLEDRLNQAENQIQDYRDENTVLKCELRELQET 181
Cdd:TIGR02168 346 LEELKEELESLEA---ELEELEAELeELESRLEELEeqlETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQE 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 182 TFATSDEKLREKIRTTEGLCDELMEENEQLKAEVKDLQQEIEEMQDQYREEEIEEFRELQRELELNAKnCRVLQfKLRKT 261
Cdd:TIGR02168 423 IEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR-LDSLE-RLQEN 500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 262 ERSRDQAEAEKMHSEKKLDEYMNScpeaVAASIKSDSakvkelEYEIRVAKEVSVRLHNELEQTEE---------KRCKL 332
Cdd:TIGR02168 501 LEGFSEGVKALLKNQSGLSGILGV----LSELISVDE------GYEAAIEAALGGRLQAVVVENLNaakkaiaflKQNEL 570
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 333 EDEVFYLKEKVREIQTQNKWREARNKTD----IAVKRLSAEIAAS------------VPNIPE-NEMSKELR-------- 387
Cdd:TIGR02168 571 GRVTFLPLDSIKGTEIQGNDREILKNIEgflgVAKDLVKFDPKLRkalsyllggvlvVDDLDNaLELAKKLRpgyrivtl 650
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 388 --------------------DALEREI---DLREQMRFSEEDLKRTQIRLQDVENENEELLKKLSKASKLRPPMIRSASD 444
Cdd:TIGR02168 651 dgdlvrpggvitggsaktnsSILERRReieELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 445 GNAhlQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADckrggvtsahsKAGEFKLTPEMEKDMSKMIVTISELERK 524
Cdd:TIGR02168 731 LRK--DLARLEAEVEQLEERIAQLSKELTELEAEIEELEER-----------LEEAEEELAEAEAEIEELEAQIEQLKEE 797
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 525 NLELTTQVKQLETKVTpkpnfvvpsgTTTTELRKEQEKRKALEAQVNELKTTVFKSDNQKViSLATKIEQLNGQLQMVNE 604
Cdd:TIGR02168 798 LKALREALDELRAELT----------LLNEEAANLRERLESLERRIAATERRLEDLEEQIE-ELSEDIESLAAEIEELEE 866
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 605 RCNTLHKK-----QVKDGEIQYSDELKQKIEDLEKRLSEKLaiDSVSELQgkiptiDEIEQCCEVLAAVETQTGRLckqf 679
Cdd:TIGR02168 867 LIEELESEleallNERASLEEALALLRSELEELSEELRELE--SKRSELR------RELEELREKLAQLELRLEGL---- 934
|
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 392927460 680 eKIDHAQKDERRRSLSKDSGAAIIAELANVMQEMKNVHQKLDKIKN 725
Cdd:TIGR02168 935 -EVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
124-1066 |
4.44e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 4.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 124 KEEKAQWAL---RQRLQNAEQSESSLINMLeDRLNQAENQIQDYRDentvLKCELRELQETTFATSDEKLREKIRTTEGL 200
Cdd:TIGR02169 171 KKEKALEELeevEENIERLDLIIDEKRQQL-ERLRREREKAERYQA----LLKEKREYEGYELLKEKEALERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 201 CDELMEENEQLKAEVKDLQQEIEEmqdqyreeeieefrelqRELELNAKNCRVLqfKLRKTERSRDQAEAEKMHSEkkld 280
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRLEE-----------------IEQLLEELNKKIK--DLGEEEQLRVKEKIGELEAE---- 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 281 eyMNSCPEAVAAS---IKSDSAKVKELEYEIRVAKEVSVRLHNELEQTEEKRCKLEDEVFYLKEKVREIQTQ-----NKW 352
Cdd:TIGR02169 303 --IASLERSIAEKereLEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEleevdKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 353 REARNKTDIAVKRLSAEIAAsvpnipENEMSKELRDALEREIDLREQMRFSEEDLKRTQIRLQDVENENEELLKKLSKAS 432
Cdd:TIGR02169 381 AETRDELKDYREKLEKLKRE------INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 433 KLRPPMIRsasdgnahlQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGGVTSAHSKAGEFKLtpemEKDMS 512
Cdd:TIGR02169 455 WKLEQLAA---------DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVL----KASIQ 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 513 KMIVTISELERKNLElttQVKQLETKVTPKPNFVV----PSGTTTTELRKEQEKRKALEAQVNELKttvfksDNQKVISL 588
Cdd:TIGR02169 522 GVHGTVAQLGSVGER---YATAIEVAAGNRLNNVVveddAVAKEAIELLKRRKAGRATFLPLNKMR------DERRDLSI 592
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 589 ATKIEQLNGQLQMV--NERCNTLHKKQVKDGEIQYSDELKQKIED------LEKRLSEK---LAIDSVSELQGKIPTIDE 657
Cdd:TIGR02169 593 LSEDGVIGFAVDLVefDPKYEPAFKYVFGDTLVVEDIEAARRLMGkyrmvtLEGELFEKsgaMTGGSRAPRGGILFSRSE 672
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 658 IEQCCEVLAAVETQTGRLCKQFEKIDHAQK--DERRRSLSKDSGAaiIAELANVMQEMKNVHQKL-DKIKNVTpntglsv 734
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENrlDELSQELSDASRK--IGEIEKEIEQLEQEEEKLkERLEELE------- 743
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 735 KRIPSKENLLEIKCSKCDQLQTSIDEQANEISFYKKKNKDLTNQVLQTEDRwtiEIEKQRQIFEKEIKTLGIRVADAKRQ 814
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP---EIQAELSKLEEEVSRIEARLREIEQK 820
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 815 NDELS---ELLESKSTTLVEKTRSLEEQEersKKLRAETELLRKDMQELETDkktVKEFEIKYKKLESifetEREKMNGE 891
Cdd:TIGR02169 821 LNRLTlekEYLEKEIQELQEQRIDLKEQI---KSIEKEIENLNGKKEELEEE---LEELEAALRDLES----RLGDLKKE 890
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 892 RNRSKNELAAMKklkddaeehlkklsddQKKNDAAWKIEksKLEKDIALLKKQLpdehemkeSTATPQNSISGESSPLRR 971
Cdd:TIGR02169 891 RDELEAQLRELE----------------RKIEELEAQIE--KKRKRLSELKAKL--------EALEEELSEIEDPKGEDE 944
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 972 QDSEKMLVLE-LKKQISILEKRIadsnSSLEECKIQNAELRDQLAKVQANWEKDKEVFQhKTRKSEKLRTVEIDamQQKF 1050
Cdd:TIGR02169 945 EIPEEELSLEdVQAELQRVEEEI----RALEPVNMLAIQEYEEVLKRLDELKEKRAKLE-EERKAILERIEEYE--KKKR 1017
|
970
....*....|....*.
gi 392927460 1051 SSRMRIMEDTNKALHS 1066
Cdd:TIGR02169 1018 EVFMEAFEAINENFNE 1033
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
124-1050 |
6.91e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 57.67 E-value: 6.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 124 KEEKAQWALRQRLQNAEQSESSLINMLEDRLNQAENQIQDYRDENtvLKCELRELQETTFATSDEKLREKIRTTEGLCDE 203
Cdd:pfam02463 170 KKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQ--LKEKLELEEEYLLYLDYLKLNEERIDLLQELLR 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 204 LMEENEQLKAEVKDLQQEIEEMQDQYREEEIEEFRELQRELELNAKNCRVLQFKLRKTERSRDQAEAEKMHSEKkldeym 283
Cdd:pfam02463 248 DEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEK------ 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 284 nscpeavaasiksdsaKVKELEYEIRVAKEVSVRLHNELEQTEEKRCKLEDEVFYLKEKvreiqtQNKWREARNKTDIAV 363
Cdd:pfam02463 322 ----------------EKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKL------QEKLEQLEEELLAKK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 364 KRLSAEIAASvpnIPENEMSKELRDALEREIDLREQMRFSEEDLKrtqirlqdvENENEELLKKLSKasklrppmirsas 443
Cdd:pfam02463 380 KLESERLSSA---AKLKEEELELKSEEEKEAQLLLELARQLEDLL---------KEEKKEELEILEE------------- 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 444 dgnahlQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRggvtsahskagefkltpemEKDMSKMIVTISELER 523
Cdd:pfam02463 435 ------EEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDL-------------------LKETQLVKLQEQLELL 489
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 524 KNLELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQEKRKALEAQVNELKTTVFKSDNQKVISLATKIEQLNGQlqmvn 603
Cdd:pfam02463 490 LSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQ----- 564
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 604 ercntlHKKQVKDGEIQYSDELKQKIEDLEKRLSEKLAIDSVSELQGKIPTIDEIEQCCEVLAAVETQTGRLCKQFEKID 683
Cdd:pfam02463 565 ------KLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLK 638
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 684 HAQKDERRRSLSKDSGAAIIAELANVMQEMKNVHQKLDKIKNVTPNTGLSVKRIP--------SKENLLEIKCSKCDQLQ 755
Cdd:pfam02463 639 ESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEilrrqleiKKKEQREKEELKKLKLE 718
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 756 TSIDEQANEISFYKKKNKDLTNQVLQTEDRWTIEIEKQRQIFEKEIKTLGIRVADAKRQNDELSELLESKSTTLVEKTRS 835
Cdd:pfam02463 719 AEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKA 798
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 836 LEEQEERSKKLRAETELLRKDMQELETDKKTVKEFEIKYKKLESIFETEREKMNGERNRSKNELAAMKKLKDDAEEHLKK 915
Cdd:pfam02463 799 QEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 878
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 916 LSDDQKKNDAAWKIEKSKLEKDIALLKKQLPDEHEMKESTATPQNSISGESSPLRRQDSEKMLVLELKKQISI------L 989
Cdd:pfam02463 879 LEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEennkeeE 958
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 392927460 990 EKRIADSNSSLEECKIQNAELRDQLAKVQANWEKDKEVFQHKTRKSEKLRTVEIDAMQQKF 1050
Cdd:pfam02463 959 EERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRL 1019
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
150-468 |
8.32e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 8.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 150 LEDRLNQAENQIQDYRDENTVLKCELRELQETTfatsdEKLREKIRTTEGLCDELMEENEQLKAEVKDLQQEIEEMQDQY 229
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEEL-----EQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 230 REEEIEEFRELQRELELNAKncrvlqFKLRKTERSRDQAEAEKMHSEKKLDEYMNSCPEAVAASIKSDSAKVKE----LE 305
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEE------LAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRErlesLE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 306 YEIRVAKEVSVRLHNELEQTEEKRCKLEDEVFYLKEKVREIQTQ-NKWREARNKTDIAVKRLSAEiaasvpnipENEMSK 384
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESElEALLNERASLEEALALLRSE---------LEELSE 901
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 385 ELRDALEREIDLREQMRFSEEDLKRTQIRLQDVENENEELLKKLSKASKLRPPMIrSASDGNAHLQLELAESQVQHLNTK 464
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEA-EALENKIEDDEEEARRRLKRLENK 980
|
....
gi 392927460 465 IERL 468
Cdd:TIGR02168 981 IKEL 984
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
217-938 |
1.13e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 1.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 217 DLQQEIEEMQDQYREEEIEEFRELQRELELNAKNCRVLQFKLRKTERSRDQAEAEKMHSEKKLDE-----------YMNS 285
Cdd:PTZ00121 1080 DFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEarkaedakrveIARK 1159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 286 CPEAVAASIKSDSAKVKELEyEIRVAKEvsVRLHNELEQTEEKRcKLEDEVFYlkEKVREIQTQNKWREARNKTDI---A 362
Cdd:PTZ00121 1160 AEDARKAEEARKAEDAKKAE-AARKAEE--VRKAEELRKAEDAR-KAEAARKA--EEERKAEEARKAEDAKKAEAVkkaE 1233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 363 VKRLSAEIAASVPNIPENEMSKELRDALEREIDLREQMRFSEEDLKRTQIRLQDVENENEELLK--KLSKASKLRPPMIR 440
Cdd:PTZ00121 1234 EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKaeEKKKADEAKKKAEE 1313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 441 SASDGNAHLQLELAESQVQHLNTKIERLEKTNDHLNKkivelEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISE 520
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKA-----EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 521 LERKNLELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQEKRKALEAQvNELKTTVFKSDNQKVISLATKIEQLNGQLq 600
Cdd:PTZ00121 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK-KKAEEAKKADEAKKKAEEAKKAEEAKKKA- 1466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 601 mvnERCNTLHKKQVKDGEIQYSDELKQKIEDLEKRLSEklaIDSVSELQGKiptIDEIEQCCEVLAAVETQTGRLCKQFE 680
Cdd:PTZ00121 1467 ---EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE---AKKAAEAKKK---ADEAKKAEEAKKADEAKKAEEAKKAD 1537
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 681 KIDHAQKDERRRSLSKDSGAAIIAELANVMQEMKNVHQKLDKIKNVTPNTGLSVKRIPSKENLL-EIKCSKCDQLQTSid 759
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYeEEKKMKAEEAKKA-- 1615
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 760 EQANEISFYKKKNKDLTNQVLQTEDRWTIEIEKQRQIfEKEIKTLGIRVADAKRQNDELSELLESKSTTLVEKTRSLEEQ 839
Cdd:PTZ00121 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL-KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 840 EERSKKLRAETELLRKDMQELETDKKTVKEFEIKYKKLESI-FETEREKMNGERNR----SKNELAAMKKLKDDAEEHLK 914
Cdd:PTZ00121 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAkKEAEEDKKKAEEAKkdeeEKKKIAHLKKEEEKKAEEIR 1774
|
730 740
....*....|....*....|....*....
gi 392927460 915 K-----LSDDQKKNDAAWKIEKSKLEKDI 938
Cdd:PTZ00121 1775 KekeavIEEELDEEDEKRRMEVDKKIKDI 1803
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
107-417 |
1.18e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 1.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 107 QTLKEEIsQLRDINHSLKEEKAQWALRQRLQNAEQSESSLINMLEDRLNQAENQIQDYRDENTVLKCELRELQEttfatS 186
Cdd:COG1196 216 RELKEEL-KELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQA-----E 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 187 DEKLREKIRTTEGLCDELMEENEQLKAEVKDLQQEIEEMQDQyREEEIEEFRELQRELELNAKNCRVLQFKLRKTERSRD 266
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE-LEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 267 QAEAEKMHSEKKLDeymnscpEAVAASIKSDSAKVKELEYEIRVAKEVSVRLHNELEQTEEKRCKLEDEVFYLKEKVREI 346
Cdd:COG1196 369 EAEAELAEAEEELE-------ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 392927460 347 QTQNKWREARNKTDIAVKRLSAEIAASVPNIPENEmsKELRDALEREIDLREQMRFSEEDLKRTQIRLQDV 417
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLE--AALAELLEELAEAAARLLLLLEAEADYEGFLEGV 510
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
295-1164 |
2.76e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.75 E-value: 2.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 295 KSDSAKVKELEYEIRVA-----KEVSVRLHNELEQTEEKRCKLEDEVFYLKEKVREIQ------TQNKWREARNKTDIAV 363
Cdd:pfam02463 166 RLKRKKKEALKKLIEETenlaeLIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEeyllylDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 364 KRLSAEIAASVPNIPENEMSKELRDALEREIDLREQmRFSEEDLKRTQIRLQDVENE---NEELLKKLSKASKLRPPMIR 440
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEK-KLQEEELKLLAKEEEELKSEllkLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 441 SASDGNAHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISE 520
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 521 LERKNLELTTQVKQLETKVTPKPNFVVPSgtTTTELRKEQEKRKALEAQVNELKTTVFKSDNQKVISLATKIEQLNGQLQ 600
Cdd:pfam02463 405 KEAQLLLELARQLEDLLKEEKKEELEILE--EEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 601 MVNERCNTLHKKQVKDGEIQYSDELKQKIEDLEKRLSEKLAIDSVSELQGKIPTIDEIEQCcEVLAAVETQTGRLCKQFE 680
Cdd:pfam02463 483 QEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKV-AISTAVIVEVSATADEVE 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 681 KIDHAQKDERRRSLSKDSGAAIIAELanvmqemknvhqKLDKIKNVTPNTGLSVKRIPSKENLLEIKCSKCDQLQTSIDE 760
Cdd:pfam02463 562 ERQKLVRALTELPLGARKLRLLIPKL------------KLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGIL 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 761 QANEISFYKKKNKDLTNQVLQTEDRWTIEIEKQRQIFEKEIKTLGIRVADAKRQNDELSELLESKSTTLVEKTRSLEEQE 840
Cdd:pfam02463 630 KDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREK 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 841 ERSKKLRAETELLRKDMQELETDKktVKEFEIKYKKLESIFETEREKMNGERNRSKNELAAMKKLKDDAEEhlkKLSDDQ 920
Cdd:pfam02463 710 EELKKLKLEAEELLADRVQEAQDK--INEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAE---EREKTE 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 921 KKNDAAWKIEKSK-LEKDIALLKKQLPDEHEMKESTATPQNSISGESSPLRRQDSEKMLVLELKKQISILEKRIADSNSS 999
Cdd:pfam02463 785 KLKVEEEKEEKLKaQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEIT 864
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1000 LEECKIQNAELRDQLAKVQANWEKDKEVFQHKTRKSEKLRTVEIDAMQQKFSSRMRIMEDTNKALHSQLVLARRERDTNK 1079
Cdd:pfam02463 865 KEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEE 944
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1080 DALTNFEKQVTDERNNLKVKEKSANESTEKVKELQ-NRLTAKEEELERLNTDLRLTKEARKADQILWNIDRARNRNEKID 1158
Cdd:pfam02463 945 ADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAiEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLE 1024
|
....*.
gi 392927460 1159 NTDSVE 1164
Cdd:pfam02463 1025 LFVSIN 1030
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
106-402 |
4.05e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 4.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 106 IQTLKEEISQLRDINHSLKEEKAQwalRQRLQNAEQsesslinmLEDRLNQAENQIQDYRdentvlkcELRELQETTFA- 184
Cdd:COG4913 227 ADALVEHFDDLERAHEALEDAREQ---IELLEPIRE--------LAERYAAARERLAELE--------YLRAALRLWFAq 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 185 TSDEKLREKIRTTEGLCDELMEENEQLKAEVKDLQQEIEEMQDQYREEEIEEFRELQRELElnakncrvlqfklrkters 264
Cdd:COG4913 288 RRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIE------------------- 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 265 rdQAEAEKMHSEKKLDEYMNSCpEAVAASIKSDSAKVKELeyeIRVAKEVSVRLHNELEQTEEKRCKLEDEVFYLKEKVR 344
Cdd:COG4913 349 --RLERELEERERRRARLEALL-AALGLPLPASAEEFAAL---RAEAAALLEALEEELEALEEALAEAEAALRDLRRELR 422
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 392927460 345 EIQTQNKWREARNKtdiavkrlsaeiaasvpNIPENEMskELRDALEREIDLRE-QMRF 402
Cdd:COG4913 423 ELEAEIASLERRKS-----------------NIPARLL--ALRDALAEALGLDEaELPF 462
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
789-1242 |
4.21e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 4.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 789 EIEKQRQIFEKEIKTLGIRVADAKRQNDELSELLESKSTTLVEKTRSLEEQEERskklraETELLRKDMQELETDKktvk 868
Cdd:PTZ00121 1225 KAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR------KADELKKAEEKKKADE---- 1294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 869 efeikYKKLESIFETEREKMNGERNRSKNELAAMKKLKDDAEEHLKKLSDDQKKNDAAWKIEKSKLEKDIALLKKQLPDE 948
Cdd:PTZ00121 1295 -----AKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA 1369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 949 HEMKESTATPQNSISGESSPLRRQDSEKMLVLELKKQISILEKRIADSNSSLEECKIQNAELRDQLAKVQANWEKDKEVF 1028
Cdd:PTZ00121 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEA 1449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1029 QHKTRKSEKLRTVEIDAMQQKFSSRM-RIMEDTNKALHSQLVLARRERDTNKDALTNFEKQVTDERNnlKVKEKSANEST 1107
Cdd:PTZ00121 1450 KKKAEEAKKAEEAKKKAEEAKKADEAkKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK--KAEEAKKADEA 1527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1108 EKVKELQNRLTAKEEELERLNTDLRLTKEARKADQILWNIDRARNRNEKIDNTDSVETIRKqyrdCETFYSKEMDRLNDK 1187
Cdd:PTZ00121 1528 KKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK----AEEARIEEVMKLYEE 1603
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 392927460 1188 ITEITAEKNRQKNEAqktiRVLSEQIKVLEIEQKNLSQNKDSQQVVKEMIESERE 1242
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEA----KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
752-1286 |
4.83e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 4.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 752 DQLQTSIDEQANEISFYKKKNKDLTNQVLQTEDrwtiEIEKQRQIFEKEIKTLGIRVADAKRQNDELSELLESKSTTLVE 831
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEA----ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 832 KTRSLEEQEERSKKLRAETELLRKDMQELETDKKTVKEFEIKYKKLESIFETEREKMNGERNRSKNELAAMKKLKDDAEE 911
Cdd:COG1196 311 RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 912 HLKKLSDDQKKNDAAWKIEKSKLEKDIALLKKQLPDEHEMKESTATPQNSISGESSPLRRQDSEKMLVLELKKQISILEK 991
Cdd:COG1196 391 ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 992 RIADSNSSLEECKIQNAELRDQ---LAKVQANWEKDKEVFQHKTRKSEKLRTVEIDAMQQKFSSRMRIMEDTnkALHSQL 1068
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARlllLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEA--ALAAAL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1069 VLARRERDTNKDALTNFEKQVTDERNNLKVKEKSANESTEKVKELQNRLTAKEEELERLNTDLRLTKEARKADQILWNID 1148
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1149 RARNRNEKIDNTDSVETIRKqyrdcETFYSKEMDRLNDKITEITAEKNRQKNEAQKTIRVLSEQIKVLEIEQKNLSQNKD 1228
Cdd:COG1196 629 AARLEAALRRAVTLAGRLRE-----VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 392927460 1229 SQQVVKEMIESERERLQQIVHLNELQKLTRKYRLSSIIDQLAYVSEATRKTSREAEPD 1286
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD 761
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
791-1137 |
5.51e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 5.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 791 EKQRQIFEkEIKTLGIRVADAKRQNDELSELLESKSTtlvEKTRSLEEQEERSKKLRAETELLRKDMQELETDKKTVKef 870
Cdd:TIGR02169 170 RKKEKALE-ELEEVEENIERLDLIIDEKRQQLERLRR---EREKAERYQALLKEKREYEGYELLKEKEALERQKEAIE-- 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 871 eikyKKLESIfETEREKMNGERNRSKNELAAMKKLKDDAEEHLKKLSDDQ----KKNDAAWKIEKSKLEKDIALLKKQLP 946
Cdd:TIGR02169 244 ----RQLASL-EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEqlrvKEKIGELEAEIASLERSIAEKERELE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 947 DEHEMKESTATPQNSISGESSPLRRQ-DSEKMLVLELKKQISILEKRIADSNSSLEECKIQNAELRDQLAKVQanweKDK 1025
Cdd:TIGR02169 319 DAEERLAKLEAEIDKLLAEIEELEREiEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR----EKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1026 EVFQHKTRKSEKLRTVEIDAMQQKfSSRMRIMEDTNKALHSQLVLARRERDTNKDALTNFEKQVTDERNNLKVKEKSANE 1105
Cdd:TIGR02169 395 EKLKREINELKRELDRLQEELQRL-SEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473
|
330 340 350
....*....|....*....|....*....|..
gi 392927460 1106 STEKVKELQNRLTAKEEELERLNTDLRLTKEA 1137
Cdd:TIGR02169 474 LKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
91-949 |
6.65e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.59 E-value: 6.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 91 EEERAITPTENESEYIQTLKEEISQLRDINHSLKEEKAQWALRQRLQNAEQSESSLINMLEDRLNQAENQIQDYRDENTV 170
Cdd:pfam02463 185 LAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 171 LKCELRELQETTFATSDEKLREKIRTTEGLCDELMEENEQLKAEVKDLQQEIEEMQDQyREEEIEEFRELQRELELNAKN 250
Cdd:pfam02463 265 EKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE-KKKAEKELKKEKEEIEELEKE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 251 CRVLQFKLRKTERSRDQAEAEKMHSEKKLDEYMNSCPEAVAASIKSDSAKVKELEYEIRVAKEVSVRLhnELEQTEEKRC 330
Cdd:pfam02463 344 LKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLL--ELARQLEDLL 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 331 KLEDEVFYLKEKVREIQTQNKWREARNKTDIAVKRLSAEiaasvpniPENEMSKELRDALEREIDLREQMRFSEEDLKRT 410
Cdd:pfam02463 422 KEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKL--------LKDELELKKSEDLLKETQLVKLQEQLELLLSRQ 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 411 QIRLQDVENENEELLKKLSKASKLRPPMIRSASdgnAHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGG 490
Cdd:pfam02463 494 KLEERSQKESKARSGLKVLLALIKDGVGGRIIS---AHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRAL 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 491 VTSAHSKAGEFKLTPEMEKDMSKMIVTISELE--RKNLELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQEKRKALEA 568
Cdd:pfam02463 571 TELPLGARKLRLLIPKLKLPLKSIAVLEIDPIlnLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRK 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 569 QVNELKTTVFKSDNQKVISLATKIEQLNGQLQMVNERCNTLHKKQVKDGEIQYSDELKQKIEDLEKRLSEKLAIDSVSEL 648
Cdd:pfam02463 651 GVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEA 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 649 QGKIPTIDEIEQcCEVLAAVETQTGRLCKQFEKidhaQKDERRRSLSKDSGAAIIAELANVMQEMKNVHQKLDKIKNVTP 728
Cdd:pfam02463 731 QDKINEELKLLK-QKIDEEEEEEEKSRLKKEEK----EEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRA 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 729 NTGLSVKRIPSKENLLEIKCSKCDQLQTSIDEQANEISFYKKKNKDLTNQVLQTEDRWTIEIEKQRQIFEKEIKTLGirv 808
Cdd:pfam02463 806 LEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQ--- 882
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 809 aDAKRQNDELSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETDKKTVKEFEIKYKKLESIFETEREKM 888
Cdd:pfam02463 883 -KLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEER 961
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 392927460 889 NGERNRSKNELAAMKKLKDDAEEHLKKLSDDQKKNDAAWKIEKSKLEKDIALLKKQLPDEH 949
Cdd:pfam02463 962 NKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEF 1022
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
792-1260 |
1.50e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 792 KQRQIFEKEIKTLGIRVADAKRQNDELSELLEskstTLVEKTRSLEEQEERSKKLRAETELLRK------DMQELETDKK 865
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQE----ELEELEEELEELEAELEELREELEKLEKllqllpLYQELEALEA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 866 TVKEFEIKYKKLESIFETEREKMNgERNRSKNELAamkKLKDDAEEHLKKLSDDQKKNDAAWKIEKSKLEKDIALLKKQL 945
Cdd:COG4717 140 ELAELPERLEELEERLEELRELEE-ELEELEAELA---ELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 946 PDEHEMKESTATPQNSISGES---SPLRRQDSEKMLVLELKKQISILEKRIADSNSSLEECKIQNAELRDQLAKVQANWe 1022
Cdd:COG4717 216 EEAQEELEELEEELEQLENELeaaALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLA- 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1023 KDKEVFQHKTRKSEKLRTVEI--DAMQQKFSSRMRIMEDTNKALHSQLVLARRERDTNKDALTNFEKQVTDERNNLKVKE 1100
Cdd:COG4717 295 REKASLGKEAEELQALPALEEleEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAA 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1101 KSANESTEKVKELQNRLTAKEEELErlntdlrLTKEARKADQILWNIDRARNRNEKIDNTDSVETIRKQYRDCETFYSKE 1180
Cdd:COG4717 375 LLAEAGVEDEEELRAALEQAEEYQE-------LKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEE 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1181 MDRLNDKITEITAEKNRQknEAQKTIRVLSEQIKVLEIEQKNLSQNKDSQQVVKEMIESERERLQQiVHLNELQKLTRKY 1260
Cdd:COG4717 448 LEELREELAELEAELEQL--EEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYRE-ERLPPVLERASEY 524
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
614-1254 |
1.75e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 53.13 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 614 VKDGEIQYSDELkQKIEDLEKRLSEKL--AIDSVSELQGKIPT-IDEIEQCCEVLAAVeTQTGRLCKQFEKIDHAQKDER 690
Cdd:TIGR01612 1102 GKEENIKYADEI-NKIKDDIKNLDQKIdhHIKALEEIKKKSENyIDEIKAQINDLEDV-ADKAISNDDPEEIEKKIENIV 1179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 691 RRSLSKDSGAAIIAELANVMQEMKNVHQKLDKIKNVTPNTGlsvkripskENLLEIKCSKCDQLQTSIDEQANEISFYKK 770
Cdd:TIGR01612 1180 TKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYG---------KNLGKLFLEKIDEEKKKSEHMIKAMEAYIE 1250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 771 KNKDLTNQVLQTEDRWTIEIEkqrqiFEKEIKTLGIRVADAK------RQNDELSELLESKSTTLVEKTRSLEEQEERSK 844
Cdd:TIGR01612 1251 DLDEIKEKSPEIENEMGIEMD-----IKAEMETFNISHDDDKdhhiisKKHDENISDIREKSLKIIEDFSEESDINDIKK 1325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 845 KLRAETELLRKDMQELETDKKTVKEFE--IKYKKLESIFETEREKMNGERNRSKNelaaMKKLKDDAEEHLKKLSDDQKK 922
Cdd:TIGR01612 1326 ELQKNLLDAQKHNSDINLYLNEIANIYniLKLNKIKKIIDEVKEYTKEIEENNKN----IKDELDKSEKLIKKIKDDINL 1401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 923 NDAAWKIEKSKLEKDIALLKKQLPDEHEMKESTATPQNSISGESSPLRRQDSEKMLVLELKKQISILEKRIADSNSS--- 999
Cdd:TIGR01612 1402 EECKSKIESTLDDKDIDECIKKIKELKNHILSEESNIDTYFKNADENNENVLLLFKNIEMADNKSQHILKIKKDNATndh 1481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1000 ------LEECKIQNAELRDQLAKVQANWEKDKEVF-QHKTRKSEKLRTVEIDAMQQKFSSRMR---IMEDTNKALHSQLV 1069
Cdd:TIGR01612 1482 dfnineLKEHIDKSKGCKDEADKNAKAIEKNKELFeQYKKDVTELLNKYSALAIKNKFAKTKKdseIIIKEIKDAHKKFI 1561
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1070 LARRERDTNKDALTNFEKQVTDERNNLKVKEKSANESTEKVKELQNRLTAKEEELERLNTDLRLTKEARKADQILWNIDR 1149
Cdd:TIGR01612 1562 LEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENFENKFLKISDIKKKINDCLKETESIEKKISSFSIDSQ 1641
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1150 ARNRNEKIDNTDSV----ETIRKQYRDCETfYSKEMDRLNDKITEITAEKNRQKNeaqktirvlSEQIKVLEIEQKNLSQ 1225
Cdd:TIGR01612 1642 DTELKENGDNLNSLqeflESLKDQKKNIED-KKKELDELDSEIEKIEIDVDQHKK---------NYEIGIIEKIKEIAIA 1711
|
650 660
....*....|....*....|....*....
gi 392927460 1226 NKDSQQVVKEMIESERERLQQIVHLNELQ 1254
Cdd:TIGR01612 1712 NKEEIESIKELIEPTIENLISSFNTNDLE 1740
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
134-452 |
1.80e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 134 QRLQNAEQSESSLINMLEDRLNQAENQIQDYRDENTVLKCELRELQETTFATSDE--KLREKIRTTEGLCDELMEENEQL 211
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEeeKLKERLEELEEDLSSLEQEIENV 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 212 KAEVKDLQQEIEEMQ-----------DQYREEEIEEFRELQRELELNAKNCRVLQFKLRKTERSRDQAEAEKMHSEKK-- 278
Cdd:TIGR02169 757 KSELKELEARIEELEedlhkleealnDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEiq 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 279 -LDEYMNSCPEavaaSIKSDSAKVKELEYEIRVAKEVSVRLHNELEQTEEKRCKLEDEVFYLKEKVREIqtQNKWREARN 357
Cdd:TIGR02169 837 eLQEQRIDLKE----QIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL--ERKIEELEA 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 358 KTDIAVKRLS--------------------AEIAASVPNIPENEMSKELRDALEREIDLREQMRF-SEEDLKRTQIRLQD 416
Cdd:TIGR02169 911 QIEKKRKRLSelkaklealeeelseiedpkGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMlAIQEYEEVLKRLDE 990
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 392927460 417 -------VENENEELLKKLSKASKLRPPMIRSA---------------SDGNAHLQLE 452
Cdd:TIGR02169 991 lkekrakLEEERKAILERIEEYEKKKREVFMEAfeainenfneifaelSGGTGELILE 1048
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
799-1284 |
5.66e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 5.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 799 KEIKTLGIRVADAKRQNDELSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETDKKTVKEFEIKYKKLE 878
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 879 SIFETEREKMNGERNRSK----------NELAAMKKLKDDAEEH--LKKLSDDQKKNDAAWKIEKSKLEKDIALLKKQLP 946
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEelkkeieeleEKVKELKELKEKAEEYikLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 947 DEHEMKEstatpqnsisgessplRRQDSEKMLVlELKKQISILEKRIadsnSSLEECKIQNAELRdQLAKVQANWEKDKE 1026
Cdd:PRK03918 332 ELEEKEE----------------RLEELKKKLK-ELEKRLEELEERH----ELYEEAKAKKEELE-RLKKRLTGLTPEKL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1027 VFQHKTRKSEKLR-TVEIDAMQQKFSSRMRIMEDTNKALhSQLVLARRERDTNKDALTNFEKQVTDERNNLKVKeksanE 1105
Cdd:PRK03918 390 EKELEELEKAKEEiEEEISKITARIGELKKEIKELKKAI-EELKKAKGKCPVCGRELTEEHRKELLEEYTAELK-----R 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1106 STEKVKELQNRLTAKEEELERLNTDLRLTKEARKADQILWNIDRARNRNEKIDntdsVETIRKQYRDCETFySKEMDRLN 1185
Cdd:PRK03918 464 IEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYN----LEELEKKAEEYEKL-KEKLIKLK 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1186 DKITEITAEKNRqKNEAQKTIRVLSEQIKVLEIEQKNLsqNKDSQQVVKEMIESERERLQqivhlnELQKLTRKY-RLSS 1264
Cdd:PRK03918 539 GEIKSLKKELEK-LEELKKKLAELEKKLDELEEELAEL--LKELEELGFESVEELEERLK------ELEPFYNEYlELKD 609
|
490 500
....*....|....*....|
gi 392927460 1265 IIDQLAYVSEATRKTSREAE 1284
Cdd:PRK03918 610 AEKELEREEKELKKLEEELD 629
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
144-638 |
8.80e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 8.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 144 SSLINMLEDRLNQAENQIQDYRDENTVLKCELRELQETTFATSDEKLREKIRTTEGLcDELMEENEQLKAEVKDLQQEIE 223
Cdd:COG4717 41 AFIRAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEEL-EELEEELEELEAELEELREELE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 224 EMqDQYREEEIEEFRELQRELELNAKNCRVLQFK-----LRKTERSRDQAEAEKMHSEKKLDEYMNSCPEAVAASIKSDS 298
Cdd:COG4717 120 KL-EKLLQLLPLYQELEALEAELAELPERLEELEerleeLRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLA 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 299 AKVKELEYEIRVAKEVSVRLHNELEQTEEKRCKLEDEVFYLKEKVREIQTQNKWR--------EARNKTDIAVKRLSAEI 370
Cdd:COG4717 199 EELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLiaaallalLGLGGSLLSLILTIAGV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 371 AASVPNIPENEMSKELRDALEREIDLREQMRFSE-EDLKRTQIrlqdvenenEELLKKLSKASKLRPPMIRSASDGNAHL 449
Cdd:COG4717 279 LFLVLGLLALLFLLLAREKASLGKEAEELQALPAlEELEEEEL---------EELLAALGLPPDLSPEELLELLDRIEEL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 450 QLELAESQVQHLNTKIERLEKtndhlnkkivELEADCKRGGVTSAhskagefkltpemekdmsKMIVTISELERKNLELT 529
Cdd:COG4717 350 QELLREAEELEEELQLEELEQ----------EIAALLAEAGVEDE------------------EELRAALEQAEEYQELK 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 530 TQVKQLETKVTPKPNFVVPSGTTTT------ELRKEQEKRKALEAQVNELkttvfksdNQKVISLATKIEQLngqlqmvn 603
Cdd:COG4717 402 EELEELEEQLEELLGELEELLEALDeeeleeELEELEEELEELEEELEEL--------REELAELEAELEQL-------- 465
|
490 500 510
....*....|....*....|....*....|....*
gi 392927460 604 ercntlhkkqVKDGEIqysDELKQKIEDLEKRLSE 638
Cdd:COG4717 466 ----------EEDGEL---AELLQELEELKAELRE 487
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
104-878 |
1.25e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 104 EYIQTLKEEISQLRDINHSLKEEKAQWALR---------QRLQNAEQSESSLINMLEDRLNQAENQIQDYRDENTVLKCE 174
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELNKKikdlgeeeqLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAE 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 175 LRELQETTfatsdEKLREKIRTTEGLCDELMEENEQLKAEVKDLQQEIEEMqDQYREEEIEEFRELQRELELnakncrvL 254
Cdd:TIGR02169 331 IDKLLAEI-----EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEV-DKEFAETRDELKDYREKLEK-------L 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 255 QFKLRKTERSRDQAEAEKMHSEKKLDEYMNSCPEAVAASIKSDSAKvKELEYEIRVAKEvsvrlhnELEQTEEKRCKLED 334
Cdd:TIGR02169 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK-EDKALEIKKQEW-------KLEQLAADLSKYEQ 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 335 EVFYLKEKVREIqtQNKWREARNKTDIAVKRLSAEIAASVPNIPENEMSKELRDALEREIdlREQMRFSEEDLKRTQI-- 412
Cdd:TIGR02169 470 ELYDLKEEYDRV--EKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTV--AQLGSVGERYATAIEVaa 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 413 --RLQDVENENE-------ELLK--KLSKAS-----KLRP---PMIRSASDGNAHLQLELAESQVQHLNT---------K 464
Cdd:TIGR02169 546 gnRLNNVVVEDDavakeaiELLKrrKAGRATflplnKMRDerrDLSILSEDGVIGFAVDLVEFDPKYEPAfkyvfgdtlV 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 465 IERLEKTNDHLNK-KIVELEADC--KRGGVTSAHSKAGEFKLTPEMEKDmskmivtisELERKNLELTTQVKQLETkvtp 541
Cdd:TIGR02169 626 VEDIEAARRLMGKyRMVTLEGELfeKSGAMTGGSRAPRGGILFSRSEPA---------ELQRLRERLEGLKRELSS---- 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 542 kpnfvvpsgtttteLRKEQEKRKALeaqVNELKTTVfkSDNQKVISLATK-IEQLNGQLQMVNERCNTLHKK-QVKDGEI 619
Cdd:TIGR02169 693 --------------LQSELRRIENR---LDELSQEL--SDASRKIGEIEKeIEQLEQEEEKLKERLEELEEDlSSLEQEI 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 620 QysdELKQKIEDLEKRLSEKLAidSVSELQGKIPTID------EIEQCCEVLAAVETQTGRLCKQfekIDHAQKDERRRS 693
Cdd:TIGR02169 754 E---NVKSELKELEARIEELEE--DLHKLEEALNDLEarlshsRIPEIQAELSKLEEEVSRIEAR---LREIEQKLNRLT 825
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 694 LSKDSGAAIIAELANVMQEMKnvhqklDKIKNVTPNTGLSVKRIPSKENLLEIKCSKCDQLQTSIDEQANEISFYKKKNK 773
Cdd:TIGR02169 826 LEKEYLEKEIQELQEQRIDLK------EQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR 899
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 774 DLTNQVLQTEdrWTIEIEKQRqifekeiktLGIRVADAKRQNDELSELLESKSTTL--VEKTRSLEEQEERSKKLRAETE 851
Cdd:TIGR02169 900 ELERKIEELE--AQIEKKRKR---------LSELKAKLEALEEELSEIEDPKGEDEeiPEEELSLEDVQAELQRVEEEIR 968
|
810 820 830
....*....|....*....|....*....|.
gi 392927460 852 LLR----KDMQELETDKKTVKEFEIKYKKLE 878
Cdd:TIGR02169 969 ALEpvnmLAIQEYEEVLKRLDELKEKRAKLE 999
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
712-1240 |
1.81e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.63 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 712 EMKNVHQKLDKIKNVTPNTGLSVKRIPSKENLLEIKcskcdqlqtsIDEQANEISFYKKKNKDLTNQVLQTEDRWTiEIE 791
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEK----------INNSNNKIKILEQQIKDLNDKLKKNKDKIN-KLN 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 792 KQRQIFEKEIKTlgirvadAKRQNDELSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETDKKTVKEFE 871
Cdd:TIGR04523 103 SDLSKINSEIKN-------DKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENEL 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 872 IKYKKLESIFETEREKMNGERNRSKNELAAMKKLKDDAEEHLKKLSDDQKKNdaawkiekSKLEKDIALLKKQLPDEHEM 951
Cdd:TIGR04523 176 NLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQN--------NQLKDNIEKKQQEINEKTTE 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 952 KESTATPQNSISGESSPLRRQDSEKMLVLE-LKKQISILEKRIADSNSSLEECKIQ-NAELRDQLAKVQANWEKDKEVFQ 1029
Cdd:TIGR04523 248 ISNTQTQLNQLKDEQNKIKKQLSEKQKELEqNNKKIKELEKQLNQLKSEISDLNNQkEQDWNKELKSELKNQEKKLEEIQ 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1030 HKTRKSEKLrtveIDAMQQKFSSRMRIMEDTN----------KALHSQLVLARRERDTNKDALTNFEKQVTDERNNLKVK 1099
Cdd:TIGR04523 328 NQISQNNKI----ISQLNEQISQLKKELTNSEsensekqrelEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQ 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1100 EKSANESTEKVKELQNRLTAKEEELERLntdlrLTKEARKADQILWNIDRARNRNEKIDNTDSVETIRKQYRDCETFYSK 1179
Cdd:TIGR04523 404 EKLNQQKDEQIKKLQQEKELLEKEIERL-----KETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSIN 478
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 392927460 1180 EMDRLNDKITEITAEKNRQKNEAQKTIRVLSEQIKVLEIEQKNLSQNKDSQQVVKEMIESE 1240
Cdd:TIGR04523 479 KIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESK 539
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1063-1285 |
1.85e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.06 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1063 ALHSQLVLARRERDTNKDALTNFEKQVTDERNNLKVKEKSANESTEKVKELQNRLTAKEEELERLNTDL-RLTKEARKAD 1141
Cdd:COG3883 6 LAAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIaEAEAEIEERR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1142 QILwnIDRARNRNEKIDNTDSVETIRKQyRDCETF------YSKEMDRLNDKITEITAEKNR---QKNEAQKTIRVLSEQ 1212
Cdd:COG3883 86 EEL--GERARALYRSGGSVSYLDVLLGS-ESFSDFldrlsaLSKIADADADLLEELKADKAEleaKKAELEAKLAELEAL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 392927460 1213 IKVLEIEQKNLSQNKDSQQVVKEMIESERERLQQIVHLNELQKLTRKYRLSSIIDQLAYVSEATRKTSREAEP 1285
Cdd:COG3883 163 KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
808-959 |
2.20e-05 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 49.44 E-value: 2.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 808 VADAKRQ----NDELSELLESksttLVEKTRSLEEQEERSKKLRAETELLRKDMQEletdkktvkefeiKYKKLESIFET 883
Cdd:PRK00409 504 IEEAKKLigedKEKLNELIAS----LEELERELEQKAEEAEALLKEAEKLKEELEE-------------KKEKLQEEEDK 566
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392927460 884 EREKMNGERNrsknelAAMKKLKDDAEEHLKKLSDDQKKNDAAwkiEKSKLEKDIallKKQLPDEHEMKESTATPQ 959
Cdd:PRK00409 567 LLEEAEKEAQ------QAIKEAKKEADEIIKELRQLQKGGYAS---VKAHELIEA---RKRLNKANEKKEKKKKKQ 630
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
265-1098 |
2.56e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 2.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 265 RDQAEAEKMHSEKKLDEYMNSCPEAVAASIKSDSAKVKELEyEIRVAKEVsvRLHNELEQTEEKRCKLEDEVFYLKEKVR 344
Cdd:PTZ00121 1085 EDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAE-DARKAEEA--RKAEDARKAEEARKAEDAKRVEIARKAE 1161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 345 EIQTQNKWREARNKTDIAVKRLSAEI--AASVPNIPENEMSKELRDAleREIDLREQMRFSEEDLKRTQIRLQDVENENE 422
Cdd:PTZ00121 1162 DARKAEEARKAEDAKKAEAARKAEEVrkAEELRKAEDARKAEAARKA--EEERKAEEARKAEDAKKAEAVKKAEEAKKDA 1239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 423 ELLKKLSKAsKLRPPMIRSASDGNAHLQLELAESQVQHlNTKIERLEKTNDhlNKKIVELEADCKRGGVTSAHSKAGEFK 502
Cdd:PTZ00121 1240 EEAKKAEEE-RNNEEIRKFEEARMAHFARRQAAIKAEE-ARKADELKKAEE--KKKADEAKKAEEKKKADEAKKKAEEAK 1315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 503 LTPEMEKDMSKMIVTISELERKNLEL--TTQVKQLETKVTPKPNFVVPSGTTTTELRKEQEKRKALEAQVNELKTTVFKS 580
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEAkkAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE 1395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 581 DNQKVISLATKIEQLNgQLQMVNERCNTLHKK---QVKDGEIQYSDELKQKIEDLEKRLSEKLAIDSVSELQGKIPTIDE 657
Cdd:PTZ00121 1396 AKKKAEEDKKKADELK-KAAAAKKKADEAKKKaeeKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADE 1474
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 658 IEQCCEVLAAVETQTGRLCKQFEKIDHAQKDERRRslsKDSGAAIIAELANVMQEMKNVHQKldkiknvtpNTGLSVKRI 737
Cdd:PTZ00121 1475 AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK---KKADEAKKAEEAKKADEAKKAEEA---------KKADEAKKA 1542
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 738 PSKENLLEIKcsKCDQLQTSidEQANEISFYKKKNKDLTNQVLQTEDRWTIEIEKQRQIFEKEIKTLGIRVADAKRQNDE 817
Cdd:PTZ00121 1543 EEKKKADELK--KAEELKKA--EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA 1618
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 818 LSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETDKKTVKEFEIKYKKLESIFETEREKMNGERNRSKN 897
Cdd:PTZ00121 1619 KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEA 1698
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 898 ELAAMKKLKDDAEEHLKKLSDDQKKNDAAWKIEKSKLEKDIALLKKQLPDEHEMKESTATPQNSISGESSPLRRQDSEKM 977
Cdd:PTZ00121 1699 EEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 978 LVLE--LKKQIsilEKRIADSNSSLEECKIQNAELRDQLAKVQANWEKDKEVFQHKTRK---SEKLRTVEIDAMQQ-KFS 1051
Cdd:PTZ00121 1779 AVIEeeLDEED---EKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEvadSKNMQLEEADAFEKhKFN 1855
|
810 820 830 840
....*....|....*....|....*....|....*....|....*..
gi 392927460 1052 SRMRIMEDTNKALHSqlvlarrerDTNKDALTNFEKQVTDERNNLKV 1098
Cdd:PTZ00121 1856 KNNENGEDGNKEADF---------NKEKDLKEDDEEEIEEADEIEKI 1893
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
981-1283 |
2.67e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 2.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 981 ELKKQISILEK--RIADS----NSSLEECKIQnaELRDQLAKVQANWEKDKEVFQHKTRKSEKLRT--VEIDAMQQKFSS 1052
Cdd:COG1196 197 ELERQLEPLERqaEKAERyrelKEELKELEAE--LLLLKLRELEAELEELEAELEELEAELEELEAelAELEAELEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1053 RMRIMEDTNKALHSQLVLARRErdtnkdaLTNFEKQVTDERNNLKVKEKSANESTEKVKELQNRLTAKEEELERLNTDLR 1132
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAE-------LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1133 LTKEARKADQILWNIDRARNRNEKIDNTDSVETIRKQYRDcetfYSKEMDRLNDKITEITAEKNRQKNEAQKTIRVLSEQ 1212
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE----LLEALRAAAELAAQLEELEEAEEALLERLERLEEEL 423
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 392927460 1213 IKVLEIEQKNLSQNKDSQQVVKEMIESERERLQQIVHLNELQKLTRKYRLSSIIDQLAYVSEATRKTSREA 1283
Cdd:COG1196 424 EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
100-641 |
2.83e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.91 E-value: 2.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 100 ENESEYIQTLKEeISQLRDINHSLKEE--------KAQWALRQRLQNAEQSESSL---INMLEDRLNQAENQIQDYRDEN 168
Cdd:PRK03918 197 EKEKELEEVLRE-INEISSELPELREEleklekevKELEELKEEIEELEKELESLegsKRKLEEKIRELEERIEELKKEI 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 169 TVLKCELRELQETtfatsdEKLREKIRTTEGLCDELMEENEQLKAEVKDLQQEIEEMQDQYReeeieefrelqrelELNA 248
Cdd:PRK03918 276 EELEEKVKELKEL------KEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK--------------ELEE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 249 KNCRVLQFKLRKTERSRDQAEAEKMHseKKLDEYMnscpeAVAASIKSDSAKVKELEYEirvakevsvRLHNELEQTEEK 328
Cdd:PRK03918 336 KEERLEELKKKLKELEKRLEELEERH--ELYEEAK-----AKKEELERLKKRLTGLTPE---------KLEKELEELEKA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 329 RCKLEDEVFYLKEKVREIQTQNKWREArnktdiAVKRLsaEIAASVPNIPENEMSKELRDALEREidLREQMRFSEEDLK 408
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIKELKK------AIEEL--KKAKGKCPVCGRELTEEHRKELLEE--YTAELKRIEKELK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 409 RTQIRLQDVENENEELLKKLSKASKLRPpmIRSASDGNAHLQLELAESQVQHLNTKIERLEKTNDHLNK---KIVELEAD 485
Cdd:PRK03918 470 EIEEKERKLRKELRELEKVLKKESELIK--LKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKlkgEIKSLKKE 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 486 CKRGGVTSAHSKAGEFKLTpEMEKDMSKMIVTISELERKNL-ELTTQVKQLEtkvtPKPNFVVPSGTTTTELRKEQEKRK 564
Cdd:PRK03918 548 LEKLEELKKKLAELEKKLD-ELEEELAELLKELEELGFESVeELEERLKELE----PFYNEYLELKDAEKELEREEKELK 622
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392927460 565 ALEAQVNELKttvfksdnqkvislaTKIEQLNGQLQMVNERCNTLHKKqvkdgeiqYSDELKQKIEDLEKRLSEKLA 641
Cdd:PRK03918 623 KLEEELDKAF---------------EELAETEKRLEELRKELEELEKK--------YSEEEYEELREEYLELSRELA 676
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1062-1283 |
3.56e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 3.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1062 KALHSQLVLARRERDTNKDALTNFEKQVTDERNNLKVKEKSANESTEKVKELQNRLTAKEEELERLNTDLrltkearkAD 1141
Cdd:COG4942 37 AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL--------AE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1142 QI--LWNIDRARNRNEKIDNTDSVETIRKQYRdcETFYSKEMDRLNDKITEITAEKNRQKNEAQKTIRVLSEQIKVLEIE 1219
Cdd:COG4942 109 LLraLYRLGRQPPLALLLSPEDFLDAVRRLQY--LKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 392927460 1220 QKNLSQNKDSQQVVKEMIESERERLQQivhlnELQKLTRKY-RLSSIIDQLAYVSEATRKTSREA 1283
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAA-----ELAELQQEAeELEALIARLEAEAAAAAERTPAA 246
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
705-1267 |
3.89e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.48 E-value: 3.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 705 ELANVMQEMKNVHQKLDKIKNvtpntglsvkRIPSKENLLEIKCSKCDQLQTSIDEQANEISFYKKKNKDLTNQVLQTED 784
Cdd:TIGR04523 125 ELNKLEKQKKENKKNIDKFLT----------EIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKN 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 785 RWTIEIEKQRQI--FEKEIKTLGIRVADAKRQNDELSELLESKSTTLVEKTRSLEEQEERSKKLRAETE----LLRKDMQ 858
Cdd:TIGR04523 195 KLLKLELLLSNLkkKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNkikkQLSEKQK 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 859 ELETDKKTVKEFEIKYKKLES-IFETEREKMNGERNRSKNELAAMKKLKDDAEehlKKLSDDQKKndaawkieKSKLEKD 937
Cdd:TIGR04523 275 ELEQNNKKIKELEKQLNQLKSeISDLNNQKEQDWNKELKSELKNQEKKLEEIQ---NQISQNNKI--------ISQLNEQ 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 938 IALLKKQLPDEHEMKESTATPQNSISGESSPLRRQDSEKmlvlelKKQISILEKRIADSNSSLEECKIQNAELRDQLAKV 1017
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSY------KQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKL 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1018 QANWE---------KDKEVFQHKTRK-------SEKLRTVEIDAMQQKFSSRMRIMEDTNKALHSQLVLARRERDTNKDA 1081
Cdd:TIGR04523 418 QQEKEllekeierlKETIIKNNSEIKdltnqdsVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE 497
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1082 LTNFEKQVTDERNNLKVKEKSANESTEKVKELQNRLTAKEEELERLNTDLRLTKEARKADQILWNIDRARNRNEKIDNT- 1160
Cdd:TIGR04523 498 LKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTq 577
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1161 DSVETIRKQYRDCETFYSKEMDRLNDKITEITaeknrqkneaqKTIRVLSEQIKVLEIEQKNLSQNKDSqqvvkemIESE 1240
Cdd:TIGR04523 578 KSLKKKQEEKQELIDQKEKEKKDLIKEIEEKE-----------KKISSLEKELEKAKKENEKLSSIIKN-------IKSK 639
|
570 580
....*....|....*....|....*..
gi 392927460 1241 RERLQQIVHLNELQKLTRKYRLSSIID 1267
Cdd:TIGR04523 640 KNKLKQEVKQIKETIKEIRNKWPEIIK 666
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
752-1129 |
4.07e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.50 E-value: 4.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 752 DQLQTSIDEQANEISFYKKKNKDLTNQVLQTEDRWTiEIEKQRQIFEKEIKTLGIRVADAKRQNDELSELLESKSTTLVE 831
Cdd:PRK02224 324 EELRDRLEECRVAAQAHNEEAESLREDADDLEERAE-ELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGD 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 832 KTRSLEEQEERSKKLRAETELLRKDMQELETDKKTVKE-----------------------------FEIKYKKLESIfE 882
Cdd:PRK02224 403 APVDLGNAEDFLEELREERDELREREAELEATLRTARErveeaealleagkcpecgqpvegsphvetIEEDRERVEEL-E 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 883 TEREKMNGERNRSKNELAAMKKLKdDAEEHLKKLSDDQKKNDAAWKIEKSKLEKD---IALLKKQ---LPDEHEMKESTA 956
Cdd:PRK02224 482 AELEDLEEEVEEVEERLERAEDLV-EAEDRIERLEERREDLEELIAERRETIEEKrerAEELRERaaeLEAEAEEKREAA 560
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 957 TPQNSISGESspLRRQDSEKMLVLELKKQISILEkRIADSNSSLEECKIQNAELRDQLAKVQANWEKDKEVFQHK-TRKS 1035
Cdd:PRK02224 561 AEAEEEAEEA--REEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKrERKR 637
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1036 EKLRTVEIDAMQQkfssrmrimedtnkalhsqlvlARRERDTNKDALTNFE---KQVTDERNNLKVKEKSANESTEKVKE 1112
Cdd:PRK02224 638 ELEAEFDEARIEE----------------------AREDKERAEEYLEQVEeklDELREERDDLQAEIGAVENELEELEE 695
|
410
....*....|....*..
gi 392927460 1113 LQNRLTAKEEELERLNT 1129
Cdd:PRK02224 696 LRERREALENRVEALEA 712
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
299-1242 |
7.27e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 47.74 E-value: 7.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 299 AKVKELEYEIRVAKEVSVRLHNELEQTEEKRCKLE--------------DEVFY-------LKEKVREIQTQNKWREARN 357
Cdd:TIGR01612 544 AGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEkeikdlfdkyleidDEIIYinklkleLKEKIKNISDKNEYIKKAI 623
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 358 KTDIAVKRLSA---EIAASVP-NIPE-------------NEMSKELRDAL------------EREIDLREQmRFSEEDLK 408
Cdd:TIGR01612 624 DLKKIIENNNAyidELAKISPyQVPEhlknkdkiystikSELSKIYEDDIdalynelssivkENAIDNTED-KAKLDDLK 702
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 409 R----------------TQIRLQDVENENEELLKKLSKASKlrppMIRSASDGNAHLQLELAESQVQHLNTKIERLEKTN 472
Cdd:TIGR01612 703 SkidkeydkiqnmetatVELHLSNIENKKNELLDIIVEIKK----HIHGEINKDLNKILEDFKNKEKELSNKINDYAKEK 778
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 473 DHLNK---KIVELEADcKRGGVTSAHSKAGEFKLTPEMEKDMSKmivTISELERKNLELTTQVKQLETKVTPKPN-FVVP 548
Cdd:TIGR01612 779 DELNKyksKISEIKNH-YNDQINIDNIKDEDAKQNYDKSKEYIK---TISIKEDEIFKIINEMKFMKDDFLNKVDkFINF 854
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 549 SGTTTTELRKEQEKRKALEAQV-NELKTTVFKSDNQKVISLATKIEQLNGQLQMVNERCNTLHKkqvKDGEIQYSDELKQ 627
Cdd:TIGR01612 855 ENNCKEKIDSEHEQFAELTNKIkAEISDDKLNDYEKKFNDSKSLINEINKSIEEEYQNINTLKK---VDEYIKICENTKE 931
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 628 KIEDL---EKRLSEKL--AIDSVSE---------------LQGKIPTIDEIEQCCEvLAAVETQTGRLCKQFEKIdhaqk 687
Cdd:TIGR01612 932 SIEKFhnkQNILKEILnkNIDTIKEsnlieksykdkfdntLIDKINELDKAFKDAS-LNDYEAKNNELIKYFNDL----- 1005
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 688 derRRSLSKDSGAAIIAELANVMQEMKNVHQKLDKIKNVTPNTGLSVKR-----IPSKENLLEikcSKCDQLQTSIDEQA 762
Cdd:TIGR01612 1006 ---KANLGKNKENMLYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHTsiyniIDEIEKEIG---KNIELLNKEILEEA 1079
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 763 -------NEIS----------FYKKKNKDLTNQVLQTED-------------RWTIEIEKQRQIFEKEIKTLGI---RVA 809
Cdd:TIGR01612 1080 einitnfNEIKeklkhynfddFGKEENIKYADEINKIKDdiknldqkidhhiKALEEIKKKSENYIDEIKAQINdleDVA 1159
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 810 DAKRQNDELSElLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELEtdkkTVKEFEIKY-KKLESIFeteREKM 888
Cdd:TIGR01612 1160 DKAISNDDPEE-IEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLE----EVKGINLSYgKNLGKLF---LEKI 1231
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 889 NGERNRSKNELAAMKKLKDDAEEHLKKLSDDQKKNDAAWKIEKSKLEKDIALLKKQlpDEHEMKESTATPQNSISGESSP 968
Cdd:TIGR01612 1232 DEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDK--DHHIISKKHDENISDIREKSLK 1309
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 969 LRRQDSEKMLVLELKKQisiLEKRIADSNSsleeckiQNAELRDQLAKVqanwekdkevfqhkTRKSEKLRTVEIDAMQQ 1048
Cdd:TIGR01612 1310 IIEDFSEESDINDIKKE---LQKNLLDAQK-------HNSDINLYLNEI--------------ANIYNILKLNKIKKIID 1365
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1049 KFSSRMRIMEDTNKALHSQLVLARRERDTNKDaltNFEKQVTDERNNLKVKEKSANESTEKVKELQNRLTAKEEElerLN 1128
Cdd:TIGR01612 1366 EVKEYTKEIEENNKNIKDELDKSEKLIKKIKD---DINLEECKSKIESTLDDKDIDECIKKIKELKNHILSEESN---ID 1439
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1129 TDLRLTKEARKADQILW-NIDRARNRNEKI-----DNTDSVETIR----KQYRDCETFYSKEMDRlNDKITEITAEKNRQ 1198
Cdd:TIGR01612 1440 TYFKNADENNENVLLLFkNIEMADNKSQHIlkikkDNATNDHDFNinelKEHIDKSKGCKDEADK-NAKAIEKNKELFEQ 1518
|
1050 1060 1070 1080
....*....|....*....|....*....|....*....|....
gi 392927460 1199 kneAQKTIRVLSEQIKVLEIEQKNLSQNKDSQQVVKEMIESERE 1242
Cdd:TIGR01612 1519 ---YKKDVTELLNKYSALAIKNKFAKTKKDSEIIIKEIKDAHKK 1559
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
91-417 |
9.30e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 9.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 91 EEERAITPTENESEYIQTLKEEISQLRDINHSLKEEKAQWALRQRLQNAE-QSESSLINMLEDRLNQAENQIQDYRDENT 169
Cdd:TIGR02168 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERlEEAEEELAEAEAEIEELEAQIEQLKEELK 799
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 170 VLKCELRELQETTFAtsdekLREKIRTTEGLCDELMEENEQLKAEVKDLQQEIEEMQDQyreeeieeFRELQRELELNAK 249
Cdd:TIGR02168 800 ALREALDELRAELTL-----LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED--------IESLAAEIEELEE 866
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 250 NCRVLQFKLRKTERSRDQAEAEKMHSEKKLDEymnscpeaVAASIKSDSAKVKELEYEIRvakevsvRLHNELEQTEEKR 329
Cdd:TIGR02168 867 LIEELESELEALLNERASLEEALALLRSELEE--------LSEELRELESKRSELRRELE-------ELREKLAQLELRL 931
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 330 CKLEDEVFYLKEKVRE---------IQTQNKWREARNKTDIAVKRLSAEIAasvpNI-PENEMS-KELRDALEREIDLRE 398
Cdd:TIGR02168 932 EGLEVRIDNLQERLSEeysltleeaEALENKIEDDEEEARRRLKRLENKIK----ELgPVNLAAiEEYEELKERYDFLTA 1007
|
330
....*....|....*....
gi 392927460 399 QMrfseEDLKRTQIRLQDV 417
Cdd:TIGR02168 1008 QK----EDLTEAKETLEEA 1022
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
161-271 |
1.57e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.39 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 161 IQDYRDENTVLKCELRELQETTFATSDEKLREKIRTTEGLCDELMEENEQLKAEVKDLQQEIEEMQDQYREEEIEEFREL 240
Cdd:COG2433 382 LEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERREI 461
|
90 100 110
....*....|....*....|....*....|...
gi 392927460 241 QRELELNAKNCRV--LQFKLRKTERSRDQAEAE 271
Cdd:COG2433 462 RKDREISRLDREIerLERELEEERERIEELKRK 494
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
380-898 |
1.95e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 380 NEMSKELRDALEREIDLREQMRFSEEDLKRTQIRLQDVENENEELLKKLSKASKLRPPMIRSASD-GNAHLQLELAESQV 458
Cdd:PRK03918 175 KRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEiEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 459 QHLNTKIERLEKTNDHLNKKIVELEADCKRggVTSAHSKAGEF----KLTPEMEKDMSKMIVTISELERKNLELTTQVKQ 534
Cdd:PRK03918 255 RKLEEKIRELEERIEELKKEIEELEEKVKE--LKELKEKAEEYiklsEFYEEYLDELREIEKRLSRLEEEINGIEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 535 LETKVTpkpnfvvpsgttttELRKEQEKRKALEAQVNELKTTVFKSDNQKVI-----SLATK-----IEQLNGQLQMVNE 604
Cdd:PRK03918 333 LEEKEE--------------RLEELKKKLKELEKRLEELEERHELYEEAKAKkeeleRLKKRltgltPEKLEKELEELEK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 605 RCNTLHKKQvkdgeiqysDELKQKIEDLEKRLSE-KLAIDSVSELQGKIPTID-----------------EIEQCCEVLA 666
Cdd:PRK03918 399 AKEEIEEEI---------SKITARIGELKKEIKElKKAIEELKKAKGKCPVCGrelteehrkelleeytaELKRIEKELK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 667 AVETQTGRLCKQFEKIDHAQKDERR-----------RSLSKDSGAAIIAELANVMQEMKNVHQKLDKIKNVTPNTGLSVK 735
Cdd:PRK03918 470 EIEEKERKLRKELRELEKVLKKESEliklkelaeqlKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 736 RIPSKENLLEIKCSKCDQLQTSIDEQANEI-------------------SFYKKKN--KDLTNQVLQTEDRWTIEIEKQR 794
Cdd:PRK03918 550 KLEELKKKLAELEKKLDELEEELAELLKELeelgfesveeleerlkelePFYNEYLelKDAEKELEREEKELKKLEEELD 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 795 QIFE------KEIKTLGIRVADAKRQNDE-----LSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETD 863
Cdd:PRK03918 630 KAFEelaeteKRLEELRKELEELEKKYSEeeyeeLREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKA 709
|
570 580 590
....*....|....*....|....*....|....*
gi 392927460 864 KKTVKEFEIKYKKLESIFETEREKMNGERNRSKNE 898
Cdd:PRK03918 710 KKELEKLEKALERVEELREKVKKYKALLKERALSK 744
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
300-931 |
2.34e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.87 E-value: 2.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 300 KVKELEYEIRVAKEVSVRLHNELEQT----EEKRCKLEDEVFYLKEKVREIQTQNKWREARNKTDIAVKRLSAEIAASVP 375
Cdd:pfam05483 170 KTKKYEYEREETRQVYMDLNNNIEKMilafEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQI 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 376 NIPENEMsKELRDALEREID----LREQMRFSEEDLKRTQIRLQDVENENEELlkklsKASKLRPPMIRSASDGNAHLQL 451
Cdd:pfam05483 250 TEKENKM-KDLTFLLEESRDkanqLEEKTKLQDENLKELIEKKDHLTKELEDI-----KMSLQRSMSTQKALEEDLQIAT 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 452 ELAESQVQHLNTKIERLEKTNDHLNKKIVELEAdckrggvTSAHSKAGEFKLTPEMEKDMSKMIVTISELERKNLELTTQ 531
Cdd:pfam05483 324 KTICQLTEEKEAQMEELNKAKAAHSFVVTEFEA-------TTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEM 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 532 VKQLETKVTPKPNFvvpsGTTTTELRKEQEKRKALEAQVNELKTTvfksdNQKVISLATKIEQLNGQLQM---VNERCNT 608
Cdd:pfam05483 397 TKFKNNKEVELEEL----KKILAEDEKLLDEKKQFEKIAEELKGK-----EQELIFLLQAREKEIHDLEIqltAIKTSEE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 609 LHKKQVKDGEIQYSDELKQKIEDLEKrlSEKLAIDSVSELQGKIPTIDEIEQCCEVLAAVETQTGRLCKQFEKIDHAQKD 688
Cdd:pfam05483 468 HYLKEVEDLKTELEKEKLKNIELTAH--CDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMN 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 689 ERRrslskdsgaaiiaELANVMQEMKN----VHQKLDKIKNvtpNTGLSVKRIPSKENLLEIKCSKCDQLQTSIDEQANE 764
Cdd:pfam05483 546 LRD-------------ELESVREEFIQkgdeVKCKLDKSEE---NARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKN 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 765 ISFYKKKNKDLTNQVLQTE----------DRWTIEIEKQRQIFEKEIKTLGIRVADAKRQNDELSELLESKSTTLVEKTR 834
Cdd:pfam05483 610 IEELHQENKALKKKGSAENkqlnayeikvNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVK 689
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 835 SLEEQEERSKKLRAETELLRKDMQELETDKKTVKEFEIK-YKKLESIFETEREKMNGERNRSKNELAAMKKLKDDAEEHL 913
Cdd:pfam05483 690 LQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGlYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEK 769
|
650
....*....|....*...
gi 392927460 914 KKLSDDQKKNDAAWKIEK 931
Cdd:pfam05483 770 EKLKMEAKENTAILKDKK 787
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
238-535 |
2.58e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 2.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 238 RELQRELELNAKNCRVLQFKLRKTERSRDQAEAEKMHSEKKLDEY------MNSCPEAVAASIKSDSAKVKELEYEIRVA 311
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELsrqisaLRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 312 KEVSVRLHNELEQTEEKRCKLEDEVFYLKEKVREIQTQ-NKWREARNKTDIAVKRLSAEIAASVPNIpeNEMSKELRDAL 390
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEElKALREALDELRAELTLLNEEAANLRERL--ESLERRIAATE 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 391 EREIDLREQMRFSEEDLKRTQIRLQDVENENEELLKKLSKASKLRPPMIRSASdgNAHLQLELAESQVQHLNTKIERLEK 470
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA--LLRSELEELSEELRELESKRSELRR 915
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 392927460 471 TNDHLNKKIVELEADCKRGGVTSAHSK---AGEFKLTPEMEKDMSKMIVT-ISELERKNLELTTQVKQL 535
Cdd:TIGR02168 916 ELEELREKLAQLELRLEGLEVRIDNLQerlSEEYSLTLEEAEALENKIEDdEEEARRRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
798-1319 |
3.00e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 798 EKEIKTLGIRVADAKRQNDELSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETDKKTVKEFEIKYKKL 877
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 878 ESIFETEREKMNGERNRSKNELAAMKKLKDDAEEHLKKLSDDQKKNDAAWKIEKSKLEKDIALLKKQLPDEHEMKESTAT 957
Cdd:COG1196 301 EQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 958 PQNSISGESSPLRRQDSEKMLVLELKKQISILEKRIADSNSSLEECKIQNAE-------LRDQLAKVQANWEKDKEVFQH 1030
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEleeeeeeEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1031 KTRKSEKLRTVEIDAMQQKFSSRMRIMEDTNKALHSQLVLARRE-------RDTNKDALTNFEKQVTDERNNLKVKEKSA 1103
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgflegvkAALLLAGLRGLAGAVAVLIGVEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1104 NESTEKVkeLQNRLTAKEEELERLNTDLRLTKEARKADQILWNIDRARNRNEKIDNTDSVETIRkqYRDCETFYSKEMDR 1183
Cdd:COG1196 541 EAALAAA--LQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVD--LVASDLREADARYY 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1184 LNDKITEITAEKNRQKNEAQKTIRVLSEQIKVLEIEQKNLSQNKDSQQVVKEMIESERERLQQIvhLNELQKLTRKYRLS 1263
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE--LEELAERLAEEELE 694
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 392927460 1264 SIIDQLAYVSEATRKTSREAEPDGIRYIINQLTVLRDDEAANNLNPDERAGSVLGE 1319
Cdd:COG1196 695 LEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEE 750
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
820-1124 |
3.35e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 820 ELLEsKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETDKKTVKEFEIKYKKLESIFETEREKMNGERNRSKNEL 899
Cdd:TIGR02169 647 ELFE-KSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI 725
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 900 AAMKKLKDDAEEHLKKLSDDQKKNDAAWKIEKSKLEKDIALLKKQLPDEHEMKESTATPQNSISGESSPLRRQDSEKmlv 979
Cdd:TIGR02169 726 EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSK--- 802
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 980 leLKKQISILEKRIADSNSSLEECKIQNAELRDQLakvqanweKDKEVFQHKTRKSEKLRTVEIDAMQQKFSSRMRIMED 1059
Cdd:TIGR02169 803 --LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI--------QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEE 872
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 392927460 1060 TNKA---LHSQLVLARRERDtnkdaltNFEKQVTDERNNLKVKEKSANESTEKVKELQNRLTAKEEEL 1124
Cdd:TIGR02169 873 LEAAlrdLESRLGDLKKERD-------ELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL 933
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
152-724 |
3.50e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 3.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 152 DRLNQAENQIQDYRDEntvLKCELRELQEttFATSDEKLREKIRTTEGLCDELMEENEQLKAEVKDLQQEIEEMQDQYRE 231
Cdd:PRK03918 158 DDYENAYKNLGEVIKE---IKRRIERLEK--FIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 232 --EEIEEFRELQRELELNAKNCRVLQFKLRKTERSRDQAEAEkmhsEKKLDEymnscpeavaasiksdsaKVKELEyEIR 309
Cdd:PRK03918 233 leELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE----IEELEE------------------KVKELK-ELK 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 310 VAKEVSVRLHNELEQTEEKRCKLEDEVFYLKEKVREIQTQNKWREARNKTDIAVKRLSAEIAASVPNIPENEmsKELRDA 389
Cdd:PRK03918 290 EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERH--ELYEEA 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 390 LEREIDLRE-QMRFSEEDLKRTQIRLQDVENENEELLKKLSKASKLRPPMirsasdgnahlqlelaESQVQHLNTKIERL 468
Cdd:PRK03918 368 KAKKEELERlKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGEL----------------KKEIKELKKAIEEL 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 469 EK------------TNDHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKdMSKMIVTISELeRKNLELTTQVKQLE 536
Cdd:PRK03918 432 KKakgkcpvcgrelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRE-LEKVLKKESEL-IKLKELAEQLKELE 509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 537 TKVtpkpnfvvpSGTTTTELRKEQEKRKALEAQVNELKTTV--FKSDNQKVISLATKIEQLNGQLQMVNERCNTLHKKQV 614
Cdd:PRK03918 510 EKL---------KKYNLEELEKKAEEYEKLKEKLIKLKGEIksLKKELEKLEELKKKLAELEKKLDELEEELAELLKELE 580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 615 KDGeIQYSDELKQKIEDLEKRLSEKL-AIDSVSELQGKIPTI----DEIEQCCEVLAAVETQTGRLCKQFEKI------- 682
Cdd:PRK03918 581 ELG-FESVEELEERLKELEPFYNEYLeLKDAEKELEREEKELkkleEELDKAFEELAETEKRLEELRKELEELekkysee 659
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 392927460 683 DHAQKDERRRSLSKdsgaaiiaELANVMQEMKNVHQKLDKIK 724
Cdd:PRK03918 660 EYEELREEYLELSR--------ELAGLRAELEELEKRREEIK 693
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
106-858 |
4.25e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 4.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 106 IQTLKEEISQLRDINHSLK--EEKAQWALRQRLQNAEQSESSLINMLEDRLNQAENQIQDYR----DENTVLKcELRELQ 179
Cdd:pfam15921 115 LQTKLQEMQMERDAMADIRrrESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRkmmlSHEGVLQ-EIRSIL 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 180 ETTFATSDEKLREK-------IRTTEGLCDELMEEneqLKAEVKDLQQEIEEMQDQYREEEIEEfrelQRELELnakncr 252
Cdd:pfam15921 194 VDFEEASGKKIYEHdsmstmhFRSLGSAISKILRE---LDTEISYLKGRIFPVEDQLEALKSES----QNKIEL------ 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 253 VLQFKLRKTERSRDQAEAEKMHSEKKLdeymnSCPEAVAASIKSDSAKVKEleyEIRVAKEVSVRLHNELEQT-EEKRCK 331
Cdd:pfam15921 261 LLQQHQDRIEQLISEHEVEITGLTEKA-----SSARSQANSIQSQLEIIQE---QARNQNSMYMRQLSDLESTvSQLRSE 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 332 LEDEVFYLKEKVREIQTQ-----NKWREARNKTDiAVKRLSAEIAASVPNIPENEMSKELRDALEREIDLREQMRFSEED 406
Cdd:pfam15921 333 LREAKRMYEDKIEELEKQlvlanSELTEARTERD-QFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNS 411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 407 LKRTQIRLQ-DVENENEELLKKLSKAsklrppmIRSASDGnahlQLELAESQVQHLNTKIER-------LEKTNDHLNKK 478
Cdd:pfam15921 412 ITIDHLRRElDDRNMEVQRLEALLKA-------MKSECQG----QMERQMAAIQGKNESLEKvssltaqLESTKEMLRKV 480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 479 IVELEADckrggvtsahskagefKLTPE-MEKDMSKMIVTISELERKNLELTTQVKQLETKVTPKPNFVVPSGTTTTELR 557
Cdd:pfam15921 481 VEELTAK----------------KMTLEsSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR 544
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 558 KEQEKRKALEAQVNElkttvfksdNQKVISLATkiEQLNGQLQMVNERCNTLHKKQVKDGEIQ---------------YS 622
Cdd:pfam15921 545 NVQTECEALKLQMAE---------KDKVIEILR--QQIENMTQLVGQHGRTAGAMQVEKAQLEkeindrrlelqefkiLK 613
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 623 DELKQKIEDLEKRLS--EKLAIDSVSELQGKIPTIDEIEQ-CCEVLAAVETQTGRLCKQFEKIDHAQKDERRRSLSKDSG 699
Cdd:pfam15921 614 DKKDAKIRELEARVSdlELEKVKLVNAGSERLRAVKDIKQeRDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETT 693
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 700 A-AIIAELANVMQEMKnvhQKLDKIKNVTPNTGLSVKRIPSKENLLEIKCSKCDQLQTSID------EQANEISFYKKKN 772
Cdd:pfam15921 694 TnKLKMQLKSAQSELE---QTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQfleeamTNANKEKHFLKEE 770
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 773 KDLTNQVLQtedrwTIEIEKQRQIFEKEIKTLGIRVADAKRQNDELSelLESKSTTLVEKTRSLEEQEERSKKLRAETEL 852
Cdd:pfam15921 771 KNKLSQELS-----TVATEKNKMAGELEVLRSQERRLKEKVANMEVA--LDKASLQFAECQDIIQRQEQESVRLKLQHTL 843
|
....*.
gi 392927460 853 LRKDMQ 858
Cdd:pfam15921 844 DVKELQ 849
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
77-351 |
4.62e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 4.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 77 DTKSMVTAFSGSICEEERAITPTENESEYIQT--LKEEISQLRDINHSLKEEKAQWALR--------QRLQNAEQSESSL 146
Cdd:TIGR02169 755 NVKSELKELEARIEELEEDLHKLEEALNDLEArlSHSRIPEIQAELSKLEEEVSRIEARlreieqklNRLTLEKEYLEKE 834
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 147 INMLEDRLNQAENQIQDYRDENTVLKCELRELQETTfatsdEKLREKIRtteglcdelmeeneQLKAEVKDLQQEIEEMQ 226
Cdd:TIGR02169 835 IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL-----EELEAALR--------------DLESRLGDLKKERDELE 895
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 227 DQYREEEIEEFrelQRELELNAKNCRVLQFKLRKTERSRDQAEAEKMHSEkkldeyMNSCPEAVaASIKSDSAKVKELEY 306
Cdd:TIGR02169 896 AQLRELERKIE---ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE------DEEIPEEE-LSLEDVQAELQRVEE 965
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 392927460 307 EIRVAKEVSVRLHNELEQT-------EEKRCKLEDEVFYLKEKVREIQTQNK 351
Cdd:TIGR02169 966 EIRALEPVNMLAIQEYEEVlkrldelKEKRAKLEEERKAILERIEEYEKKKR 1017
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
761-930 |
4.78e-04 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 44.94 E-value: 4.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 761 QANEISFYKKKNKDLTNQVLQTEDRW-------TIEIEKQRQIFEKEIKTLGIRVADAKRQNDELSELLESKS---TTLV 830
Cdd:pfam15818 181 QESEICSLKKELKKVTSDLIKSKVTCqykmgeeNINLTIKEQKFQELQERLNMELELNKKINEEITHIQEEKQdiiISFQ 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 831 EKTRSLEEQEERSKKLRAETELLRKDMQELETD----KKTVKEFEIKYKKLESIFE-------TEREKMNGERNRSKNEL 899
Cdd:pfam15818 261 HMQQLLQQQTQANTEMEAELKALKENNQTLERDnelqREKVKENEEKFLNLQNEHEkalgtwkKHVEELNGEINEIKNEL 340
|
170 180 190
....*....|....*....|....*....|.
gi 392927460 900 AAMKKLKDDAEEHLKKLSdDQKKNDAAWKIE 930
Cdd:pfam15818 341 SSLKETHIKLQEHYNKLC-NQKKFEEDKKFQ 370
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
202-1012 |
5.43e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 5.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 202 DELMEENE-QLKAEVKDLQQEIEEMQDQYREEEIEEFRELQRELELNAKncrvLQFKLRKTERSRDQAEAEKMHSEKKLD 280
Cdd:pfam15921 98 NELHEKQKfYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQ----LQNTVHELEAAKCLKEDMLEDSNTQIE 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 281 EY--MNSCPEAVAASIKSDSAKVKELE-YEIRVAKEVSVRLHNELEQTEEKRCK-LEDEVFYLKEKVREIQTQNKW--RE 354
Cdd:pfam15921 174 QLrkMMLSHEGVLQEIRSILVDFEEASgKKIYEHDSMSTMHFRSLGSAISKILReLDTEISYLKGRIFPVEDQLEAlkSE 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 355 ARNKTDIAVKRLSAEIAA--SVPNIPENEMSKELRDALEREIDLREQMRFSEEDLKRTQI----RLQDVENENEELLKKL 428
Cdd:pfam15921 254 SQNKIELLLQQHQDRIEQliSEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSmymrQLSDLESTVSQLRSEL 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 429 SKASKLRPPMIRSASDgnahlQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCkrggvtsaHSKAGEFKLTPEME 508
Cdd:pfam15921 334 REAKRMYEDKIEELEK-----QLVLANSELTEARTERDQFSQESGNLDDQLQKLLADL--------HKREKELSLEKEQN 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 509 K-----DMSKMIvTISELERKNLELTTQVKQLETKVTpkpnfvvpsgTTTTELRKEQEKRKALEAQVNElkttvfksDNQ 583
Cdd:pfam15921 401 KrlwdrDTGNSI-TIDHLRRELDDRNMEVQRLEALLK----------AMKSECQGQMERQMAAIQGKNE--------SLE 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 584 KVISLATKIEQLNGQLQMVNErcntlhkkqvkdgeiqysdELKQKIEDLEKrlSEKLAIDSVSELQgkiptideieqccE 663
Cdd:pfam15921 462 KVSSLTAQLESTKEMLRKVVE-------------------ELTAKKMTLES--SERTVSDLTASLQ-------------E 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 664 VLAAVETQTGRLCKQFEKIDHAqkderrrslskdsgaaiiaelanvMQEMKNVHQKLDKIKNVTpntglsvkripskenl 743
Cdd:pfam15921 508 KERAIEATNAEITKLRSRVDLK------------------------LQELQHLKNEGDHLRNVQ---------------- 547
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 744 leikcSKCDQLQTSIDEQANEISFYKKKNKDLTnQVLQTEDRWTIEIEKQRQIFEKEIKTLGIRVADAK----RQNDELS 819
Cdd:pfam15921 548 -----TECEALKLQMAEKDKVIEILRQQIENMT-QLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKilkdKKDAKIR 621
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 820 ELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETDKKTVKEFEIKYKKLESIFETEREKMNGERNRSKNEL 899
Cdd:pfam15921 622 ELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQL 701
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 900 AAMK----------KLKDDAEEHLKKLSDDQKKNDAAWKIEKSKLEKDIALLKKQLPDEHEMKESTATPQNSISGESSPL 969
Cdd:pfam15921 702 KSAQseleqtrntlKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTV 781
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 392927460 970 RRQDSEKMLVLE-LKKQISILEKRIADSNSSLEECKIQNAELRD 1012
Cdd:pfam15921 782 ATEKNKMAGELEvLRSQERRLKEKVANMEVALDKASLQFAECQD 825
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
752-976 |
5.57e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 5.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 752 DQLQTSIDEQANEISFYKKKNKDLTNQVLQTEDRwTIEIEKQRQIFEKEIKTLGIRVADAKRQNDELSellesksttlve 831
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERR-IAALARRIRALEQELAALEAELAELEKEIAELR------------ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 832 ktRSLEEQEER-SKKLRAETELLRKDMQELETDKKTVKEFEIKYKKLESIFETEREKMNGERnRSKNELAAMKKLKDDAE 910
Cdd:COG4942 97 --AELEAQKEElAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELR-ADLAELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392927460 911 EHLKKLSDDQKKNDAAWKIEKSKLEKDIALLKKQLPDEHEMKESTATPQNSISGESSPLRRQDSEK 976
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
968-1282 |
6.32e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 6.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 968 PLRRQDSEKMLVLELKKQISILEKRIA-----DSNSSLEECKIQNAELRDQLAKVQANW-EKDKEVFQHKTRKSEKLRtv 1041
Cdd:TIGR02168 204 SLERQAEKAERYKELKAELRELELALLvlrleELREELEELQEELKEAEEELEELTAELqELEEKLEELRLEVSELEE-- 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1042 EIDAMQQKFSSRMRIMEDtnkaLHSQLVLARRERDTNKDALTNFEKQVTDERNNLKVKEKSANESTEKVKELQNRLTAKE 1121
Cdd:TIGR02168 282 EIEELQKELYALANEISR----LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1122 EELERLNTDLRLTKEARKADQilwnidrarnrnekidntdsvetirkqyrdcetfysKEMDRLNDKIteitAEKNRQKNE 1201
Cdd:TIGR02168 358 AELEELEAELEELESRLEELE------------------------------------EQLETLRSKV----AQLELQIAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1202 AQKTIRVLSEQIKVLEIEQKNLSQNKDSQQvvKEMIESERERLQQIVHLNELQKLTRKYRLSSIIDQLAYVSEATRKTSR 1281
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQEIEELL--KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
.
gi 392927460 1282 E 1282
Cdd:TIGR02168 476 A 476
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
96-488 |
8.38e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 8.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 96 ITPTENESEYIQTLKEEISQLRDINHSLKEEKAqwALRQRLQNAEQSESSLINMLEDRLNQAE------NQIQDYRDENT 169
Cdd:PRK02224 243 LEEHEERREELETLEAEIEDLRETIAETERERE--ELAEEVRDLRERLEELEEERDDLLAEAGlddadaEAVEARREELE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 170 VLKCELRE------LQETTFATSDEKLREKIRTTEGLCDELMEENEQL-------KAEVKDLQQEIEEMQDQYREEEIE- 235
Cdd:PRK02224 321 DRDEELRDrleecrVAAQAHNEEAESLREDADDLEERAEELREEAAELeseleeaREAVEDRREEIEELEEEIEELRERf 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 236 -----EFRELQRELELNAKNCRVLQFKLRKTERSRDQAEAEKMHSEKKLDEymNSCPEA--------VAASIKSDSAKVK 302
Cdd:PRK02224 401 gdapvDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEA--GKCPECgqpvegspHVETIEEDRERVE 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 303 ELEYEIRVAKEVSVRLHNELEQTEEKRcKLEDEVFYLKEKVREIQTQ-----------------------------NKWR 353
Cdd:PRK02224 479 ELEAELEDLEEEVEEVEERLERAEDLV-EAEDRIERLEERREDLEELiaerretieekreraeelreraaeleaeaEEKR 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 354 EARNKTDIAVKRLSAEIAASVPNIPENemsKELRDALEREIDLREQMRFSEEDLKRTQIRLQDVENENEELLKKLSKASK 433
Cdd:PRK02224 558 EAAAEAEEEAEEAREEVAELNSKLAEL---KERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRE 634
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 392927460 434 lRPPMIRSASDGN----AHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKR 488
Cdd:PRK02224 635 -RKRELEAEFDEArieeAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEE 692
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
800-930 |
9.60e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.69 E-value: 9.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 800 EIKTLGIR---VADA--KRQNDELSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETD----KKTVKEF 870
Cdd:COG2433 367 EVKARVIRglsIEEAleELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAEleekDERIERL 446
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 392927460 871 EikyKKLESIFETEREKMNGER--NRSKNELAAMKKLKDDAEEHLKKLSDDQKKNDAAWKIE 930
Cdd:COG2433 447 E---RELSEARSEERREIRKDReiSRLDREIERLERELEEERERIEELKRKLERLKELWKLE 505
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1086-1245 |
1.12e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.76 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1086 EKQVTDERNNLKVKEKSANESTEKVKELQNRLTAKEEELERL------NTDLRLTKEARKADQILWNIDRARNRNEKIDN 1159
Cdd:PRK05771 85 EELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLepwgnfDLDLSLLLGFKYVSVFVGTVPEDKLEELKLES 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1160 TDSVETIRKQYRDCETFYSKEMDRLNDKITEITAEKNRQKNE------AQKTIRVLSEQIKVLEIEQKNL--------SQ 1225
Cdd:PRK05771 165 DVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLEleeegtPSELIREIKEELEEIEKERESLleelkelaKK 244
|
170 180
....*....|....*....|
gi 392927460 1226 NKDSQQVVKEMIESERERLQ 1245
Cdd:PRK05771 245 YLEELLALYEYLEIELERAE 264
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
518-1030 |
1.23e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 518 ISELERKNLELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQEKRKALEAQVNELKTTvFKSDNQKVISLATKIEQLNG 597
Cdd:TIGR04523 168 KEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQ-NNQLKDNIEKKQQEINEKTT 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 598 QLQMVNERCNTLHKKQVKDGE-----IQYSDELKQKIEDLEKRLSE----------KLAIDSVSELQGKIPTIDE-IEQC 661
Cdd:TIGR04523 247 EISNTQTQLNQLKDEQNKIKKqlsekQKELEQNNKKIKELEKQLNQlkseisdlnnQKEQDWNKELKSELKNQEKkLEEI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 662 CEVLAAVETQTGRLCKQFEKIDHAQKDERRRSLSKDSGaaiIAELANVMQEMKNVHQ-KLDKIKNVTPNTGLSVKRIPSK 740
Cdd:TIGR04523 327 QNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRE---LEEKQNEIEKLKKENQsYKQEIKNLESQINDLESKIQNQ 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 741 ENLLEIKCSKCDQLQTSIDEQANEISFYKKKNKDLTNQVLqtedrwtiEIEKQRQIFEKEIKTLGIRVADAKRQNDELSE 820
Cdd:TIGR04523 404 EKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIK--------DLTNQDSVKELIIKNLDNTRESLETQLKVLSR 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 821 LLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELetdKKTVKEFEIKYKKLESifeterekmngERNRSKNELA 900
Cdd:TIGR04523 476 SINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDL---TKKISSLKEKIEKLES-----------EKKEKESKIS 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 901 AMKKLKDDAEEHLKKLSDDQKKNDAAWKIEKSKLEKDiALLKKQLPDEHEMKESTATpqnsisgessplrrqdsekmlVL 980
Cdd:TIGR04523 542 DLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQK-SLKKKQEEKQELIDQKEKE---------------------KK 599
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 392927460 981 ELKKQISILEKRIADSNSSLEECKIQNAELRDQLAKVQANWEKDKEVFQH 1030
Cdd:TIGR04523 600 DLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQ 649
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
111-404 |
2.02e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 111 EEISQLRDINHSLKEEKAQW-ALRQRLQNAEQSessLINMLEDRlnqaENQIQDYRDENTVLKCELRELQETTFATSDEK 189
Cdd:pfam05483 408 EELKKILAEDEKLLDEKKQFeKIAEELKGKEQE---LIFLLQAR----EKEIHDLEIQLTAIKTSEEHYLKEVEDLKTEL 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 190 LREKIRTTE--GLCDELMEENEQLKAEVKDLQQEIEEMQDQYREEEIEEFRELQRELELNAKNCRV-------------- 253
Cdd:pfam05483 481 EKEKLKNIEltAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLrdelesvreefiqk 560
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 254 ---LQFKLRKTERSRDQAEAEKMHSEKKLDEYMNSCpEAVAASIKSDSAKVKELEYEIRVAKEVSVRLHNELEQTEEKRC 330
Cdd:pfam05483 561 gdeVKCKLDKSEENARSIEYEVLKKEKQMKILENKC-NNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVN 639
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392927460 331 KLEDEVFYLKEKVREIqTQNKWREarnktdIAVKRLSAEIAasvpnIPENEMSKELRD---ALEREIDLREQMRFSE 404
Cdd:pfam05483 640 KLELELASAKQKFEEI-IDNYQKE------IEDKKISEEKL-----LEEVEKAKAIADeavKLQKEIDKRCQHKIAE 704
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
91-1132 |
2.04e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.85 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 91 EEERAITPTENESEYIQTlkeeisQLRDINHSLKEEKAQwalRQRLQNAEQSESSLINMLEDRLNQAENQIQDYRDENTV 170
Cdd:pfam01576 86 EEEERSQQLQNEKKKMQQ------HIQDLEEQLDEEEAA---RQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKL 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 171 LKCELRELqETTFATSDEK-----------------LREKIRTTEGLCDELMEENEQLKAEVKDLQQEIEEMQDQYREEE 233
Cdd:pfam01576 157 LEERISEF-TSNLAEEEEKakslsklknkheamisdLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELR 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 234 IEEFrelQRELELNAKNCRVLQFKLRKTERSRDQAEAEKMHSEkkLDEYMNSCPEAVAASIKSDSAKVKELEyeirvake 313
Cdd:pfam01576 236 AQLA---KKEEELQAALARLEEETAQKNNALKKIRELEAQISE--LQEDLESERAARNKAEKQRRDLGEELE-------- 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 314 vsvRLHNELEQT-------EEKRCKLEDEVFYLKEKVREiqtqnkwrearnktdiAVKRLSAEIAasvpnipenEMSKEL 386
Cdd:pfam01576 303 ---ALKTELEDTldttaaqQELRSKREQEVTELKKALEE----------------ETRSHEAQLQ---------EMRQKH 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 387 RDALEREIDLREQMRFSEEDLKRTQirlQDVENENEELLKKLSKASklrppmirsASDGNAHLQLELAESQVQHLNTKIE 466
Cdd:pfam01576 355 TQALEELTEQLEQAKRNKANLEKAK---QALESENAELQAELRTLQ---------QAKQDSEHKRKKLEGQLQELQARLS 422
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 467 RLEKTNDHLNKKIVEL--EADCKRGGVTSAHSKAgeFKLTPEMEKDMSKMIVT---ISELERKNLELTTQVKQLETKVTp 541
Cdd:pfam01576 423 ESERQRAELAEKLSKLqsELESVSSLLNEAEGKN--IKLSKDVSSLESQLQDTqelLQEETRQKLNLSTRLRQLEDERN- 499
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 542 kpnfvvpsgTTTTELRKEQEKRKALEAQVNELkttvfksdNQKVISLATKIEQLNGQLQMVnERCNTLHKKQVKDGEIQY 621
Cdd:pfam01576 500 ---------SLQEQLEEEEEAKRNVERQLSTL--------QAQLSDMKKKLEEDAGTLEAL-EEGKKRLQRELEALTQQL 561
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 622 SD--ELKQKIEDLEKRLSEklaidsvsELQGKIPTIDEIEQCCEVLAAVETQTGRLCKQFEKIDHAQKDERRR----SLS 695
Cdd:pfam01576 562 EEkaAAYDKLEKTKNRLQQ--------ELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRaeaeARE 633
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 696 KDSGAAIIAELANVMQEMKNVHQKLDKIKNVTPNTGLSVKRIPSKeNLLEIKCSKcdqlqTSIDEQANEIsfyKKKNKDL 775
Cdd:pfam01576 634 KETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGK-NVHELERSK-----RALEQQVEEM---KTQLEEL 704
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 776 TNQVLQTED---RWTIEIEKQRQIFEKEIKTLgirvadakrqndelSELLESKSTTLVEKTRSLEEQEERSKKLRAETEL 852
Cdd:pfam01576 705 EDELQATEDaklRLEVNMQALKAQFERDLQAR--------------DEQGEEKRRQLVKQVRELEAELEDERKQRAQAVA 770
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 853 LRKDMqeletdkktvkefEIKYKKLESIFETEREKMNGERNRSKNELAAMKKLKDDAEEhlKKLSDDQKKNDAAWKIEKS 932
Cdd:pfam01576 771 AKKKL-------------ELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEE--ARASRDEILAQSKESEKKL 835
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 933 K-LEKDIALLKKQLPDEHEMKESTATPQNSISGEsspLRRQDSEKMLVLELKKQisiLEKRIADSNSSLEE--------- 1002
Cdd:pfam01576 836 KnLEAELLQLQEDLAASERARRQAQQERDELADE---IASGASGKSALQDEKRR---LEARIAQLEEELEEeqsntelln 909
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1003 -----CKIQNAELRDQLAKVQANWEKDKEVFQHKTRKSEKLRT--VEID-AMQQKFSSRMRIMEDTNKALHSQLVLARRE 1074
Cdd:pfam01576 910 drlrkSTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAklQEMEgTVKSKFKSSIAALEAKIAQLEEQLEQESRE 989
|
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 392927460 1075 RDTNKDALTNFEK-------QVTDERNNLKVKEKSANESTEKVKELQNRLTAKEEELERLNTDLR 1132
Cdd:pfam01576 990 RQAANKLVRRTEKklkevllQVEDERRHADQYKDQAEKGNSRMKQLKRQLEEAEEEASRANAARR 1054
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
104-861 |
2.28e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 104 EYIQTLKEEISQLRDINHSLKEekAQWALRQRLQNAEQSESslinmLEDRLNQAENQIQDYRDENTVLKcELRElqETTF 183
Cdd:TIGR00618 219 ERKQVLEKELKHLREALQQTQQ--SHAYLTQKREAQEEQLK-----KQQLLKQLRARIEELRAQEAVLE-ETQE--RINR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 184 ATSDEKLREKIRTTEGLCDELMEENEQLKAEVKDLQQEIEEMQdqyreeeieefRELQRELELNAKNcRVLQFKLRKTER 263
Cdd:TIGR00618 289 ARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRA-----------AHVKQQSSIEEQR-RLLQTLHSQEIH 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 264 SRDQAEaekmhsekkldeymnscpeaVAASIKSDSAKVKELEYEIRvakevsvRLHNELEQTEEKRCKLEDEVFYLKEKV 343
Cdd:TIGR00618 357 IRDAHE--------------------VATSIREISCQQHTLTQHIH-------TLQQQKTTLTQKLQSLCKELDILQREQ 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 344 REIQTQNKwREARNKTDIAVKRLSAEIAASVPNIPENEMSKELRDALEREIDLRE---QMRFSEEDLKRTQIRLQDVENE 420
Cdd:TIGR00618 410 ATIDTRTS-AFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQEsaqSLKEREQQLQTKEQIHLQETRK 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 421 NEELLKKLSKASKLRPPMIRSASDGNAHLQLELAESQVQHLntkIERLEKTNDHLNKKIVELEADCkrggvTSAHSKAGE 500
Cdd:TIGR00618 489 KAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRR---MQRGEQTYAQLETSEEDVYHQL-----TSERKQRAS 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 501 FKLTPEMEKDMSKMIVTISELERKNLELTTQVKQLETKVTPKpnfvvpsgttttelRKEQEKRKALEAQVNELKTTVFKS 580
Cdd:TIGR00618 561 LKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEK--------------LSEAEDMLACEQHALLRKLQPEQD 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 581 DNQKVISLATKIEQLNGQLQMVNERCNTLHKKQVKDGEIQYSDELKQKIEDLEKRLSEklaidSVSELQGKIPTIDEIEQ 660
Cdd:TIGR00618 627 LQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQK-----MQSEKEQLTYWKEMLAQ 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 661 CCEVLAAVETQTGRLCKQFEKIDHA-----QKDERRRSLSKDSGAAIIAELANVMQEMKNVHQKldkiknvtpntglsvk 735
Cdd:TIGR00618 702 CQTLLRELETHIEEYDREFNEIENAssslgSDLAAREDALNQSLKELMHQARTVLKARTEAHFN---------------- 765
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 736 riPSKENLLEIkcskcdQLQTSIDEQANEISFYKKKNKDLTNQVLQTEDRWTIEIEKQRQIFEKEIKTLGIRVADAKRQn 815
Cdd:TIGR00618 766 --NNEEVTAAL------QTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSR- 836
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 392927460 816 delselLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELE 861
Cdd:TIGR00618 837 ------LEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSD 876
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
752-927 |
2.35e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 752 DQLQTSIDEQANEISFYKKKNKDLTNQVLQTEDrwtiEIEKQRQIFEKEIKTLGIRVADAKRQ---NDELSELLESKS-- 826
Cdd:COG3883 40 DALQAELEELNEEYNELQAELEALQAEIDKLQA----EIAEAEAEIEERREELGERARALYRSggsVSYLDVLLGSESfs 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 827 ---------TTLVEKTRS-LEEQEERSKKLRAETELLRKDMQELETDKKTVKEFEIKYKKLESIFETEREKMNGERNRSK 896
Cdd:COG3883 116 dfldrlsalSKIADADADlLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAE 195
|
170 180 190
....*....|....*....|....*....|.
gi 392927460 897 NELAAMKKLKDDAEEHLKKLSDDQKKNDAAW 927
Cdd:COG3883 196 AQLAELEAELAAAEAAAAAAAAAAAAAAAAA 226
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
104-638 |
2.40e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 104 EYIQTLKEEISQLRDINHSLKEEKAQWALRQRLQNAEQSESSLINMLEDRLNQAENQIQDYRDEntvlkcelRELQETTF 183
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE--------LEEAEAEL 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 184 ATSDEKLREKIRTTEglcdELMEENEQLKAEVKDLQQEIEEMQDQYREEEIEEFRELQRELELNAKncrvlqfklRKTER 263
Cdd:COG1196 361 AEAEEALLEAEAELA----EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE---------LEELE 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 264 SRDQAEAEKmhsekkldeymnscPEAVAASIKSDSAKVKELEYEIRVAKEVSVRLHNELEQTEEKRCKLEDEVFYLKEKV 343
Cdd:COG1196 428 EALAELEEE--------------EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 344 REIQTQNKWREARNKTDIAVKRLSAEIAASVPNIPENEMSKELRDALEREIDLREQMRFSEEDLKRTQIRLQDVEN---- 419
Cdd:COG1196 494 LLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAkagr 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 420 ----ENEELLKKLSKASKLRPPMIRSASDGNAHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGGVTSAh 495
Cdd:COG1196 574 atflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE- 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 496 skAGEFKLTPEMEKDMSKMIVTISELERKNLELTTQVKQLETKvtpkpnfvvpsgTTTTELRKEQEKRKALEAQVNELKT 575
Cdd:COG1196 653 --GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL------------ELEEALLAEEEEERELAEAEEERLE 718
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 392927460 576 TVFKSDNQKVISLATKIEQLNGQLQmvnERCNTLHKKQVKDGEIQYSDELKQKIEDLEKRLSE 638
Cdd:COG1196 719 EELEEEALEEQLEAEREELLEELLE---EEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
133-726 |
2.43e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 133 RQRLQNAEQSESSLINMLEDRLNQAENQIQDyrDENTVLKCELRELqETTFATSDEKL------REKIRTTEGLCDELME 206
Cdd:PRK02224 168 RERASDARLGVERVLSDQRGSLDQLKAQIEE--KEEKDLHERLNGL-ESELAELDEEIeryeeqREQARETRDEADEVLE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 207 ENEQLKAEVKDLQQEIEEMQDqyreeeieEFRELQRELELNAKNCRVlqfklRKTERSRDQAEAEKMHSEKKLDEymnSC 286
Cdd:PRK02224 245 EHEERREELETLEAEIEDLRE--------TIAETEREREELAEEVRD-----LRERLEELEEERDDLLAEAGLDD---AD 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 287 PEAVAASIKSDSAKVKELEYEIRVAKEVSVRLHNELEQTEEKRCKLEDEVFYLKEKVREIQTQ-NKWREARNKTDIAVKR 365
Cdd:PRK02224 309 AEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESElEEAREAVEDRREEIEE 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 366 LSAEI---AASVPNIPEN-EMSKELRDALEREidlREQMRFSEEDLKRTQIRLQDVENENEELLkklsKASKLrpPMIRS 441
Cdd:PRK02224 389 LEEEIeelRERFGDAPVDlGNAEDFLEELREE---RDELREREAELEATLRTARERVEEAEALL----EAGKC--PECGQ 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 442 ASDGNAHLQ-LELAESQVQHLNTKIERLEKTNDHLNKKIVELEadckrggvtSAHSKAGEFKLTPEMEKDMSKMI----V 516
Cdd:PRK02224 460 PVEGSPHVEtIEEDRERVEELEAELEDLEEEVEEVEERLERAE---------DLVEAEDRIERLEERREDLEELIaerrE 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 517 TISELERKNLELTTQVKQLETKVTPKPNfvvPSGTTTTELRKEQEKRKALEAQVNELKTTVFKSDnqKVISLATKIEQLN 596
Cdd:PRK02224 531 TIEEKRERAEELRERAAELEAEAEEKRE---AAAEAEEEAEEAREEVAELNSKLAELKERIESLE--RIRTLLAAIADAE 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 597 GQLQMVNERcntlhKKQVKDGEIQYSDELKQKiEDLEKRLSEKLAIDSVSELQGKiptideIEQCCEVLAAVEtqtgrlc 676
Cdd:PRK02224 606 DEIERLREK-----REALAELNDERRERLAEK-RERKRELEAEFDEARIEEARED------KERAEEYLEQVE------- 666
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 392927460 677 kqfEKIDhaQKDERRRSLSKDSGAA--IIAELANVMQEMKNVHQKLDKIKNV 726
Cdd:PRK02224 667 ---EKLD--ELREERDDLQAEIGAVenELEELEELRERREALENRVEALEAL 713
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
174-896 |
2.94e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 2.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 174 ELRELQETTFATSDEKLREKIRTTEGLCDELMEENEQLKAEVKDLQQEIEEMQDQYREEEIEEFRELQRELElNAKNCRV 253
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE-EAKKADE 1319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 254 LQFKL-----------RKTERSRDQAEAEKMHSEKKLDEYMNSCPEAVAASIKSDSAKVKELEYEirvAKEVSVRLHNEL 322
Cdd:PTZ00121 1320 AKKKAeeakkkadaakKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK---KKAEEKKKADEA 1396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 323 EQTEEKRCKLEDEVFYLKEKVREIQTQNKWREARNKTDIAVKRLSaeiaasvpnipENEMSKELRDALEREIDLREQMRF 402
Cdd:PTZ00121 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE-----------EAKKADEAKKKAEEAKKAEEAKKK 1465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 403 SEEDLKRTQIRLQDVENENEELLKKLSKASKLRPPMIRSASDGNAHLQlelaESQVQHLNTKIERLEKTNDhlNKKIVEL 482
Cdd:PTZ00121 1466 AEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAD----EAKKAEEAKKADEAKKAEE--AKKADEA 1539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 483 -EADCKRggvtsahsKAGEFKLTPEMEKDMSKMIVTISELERKNLELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQE 561
Cdd:PTZ00121 1540 kKAEEKK--------KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 562 KRKALEAQVNELKTTVFKSDNQKVISLATKIEQLNGQLQMVN--ERCNTLHKKQVKDGEiqysDELKQKIEDLEKRLSEK 639
Cdd:PTZ00121 1612 AKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKkaEEENKIKAAEEAKKA----EEDKKKAEEAKKAEEDE 1687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 640 laidsvSELQGKIPTIDEIEQCCEVLAAVETQTGRLCKQFEKIDHAQKDERRRSLSKDSGAAIIAELANVMQEMKNVHQK 719
Cdd:PTZ00121 1688 ------KKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 720 LDKIKNVTPNTGLSVKRIPSKENLLE---IKCSKCDQLQTSIDEQANEISFYKKKNKDLTNQVLQTEDRWTIEIEKQRQI 796
Cdd:PTZ00121 1762 LKKEEEKKAEEIRKEKEAVIEEELDEedeKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNM 1841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 797 FEKEIKTLGIRVADAKRQNDELSelleSKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQ-ELETDKKTVKEFEIKYK 875
Cdd:PTZ00121 1842 QLEEADAFEKHKFNKNNENGEDG----NKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIErEIPNNNMAGKNNDIIDD 1917
|
730 740
....*....|....*....|.
gi 392927460 876 KLEsifETEREKMNGERNRSK 896
Cdd:PTZ00121 1918 KLD---KDEYIKRDAEETREE 1935
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
623-1284 |
3.09e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 623 DELKQKIEDLEKRLSEKLAIDSVSELQGKIPTIDEIEQCCEVLAAVETQTGRLCKQF-EKIDHAQKDERRRSLSKDSGAA 701
Cdd:TIGR02169 254 EKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIaEKERELEDAEERLAKLEAEIDK 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 702 IIAELANVMQEMKNVHQKLDKIKNvtpntglsvkRIPSKENLLEIKCSKCDQLQTSIDEQANEISFYKKKNKDLTNQV-- 779
Cdd:TIGR02169 334 LLAEIEELEREIEEERKRRDKLTE----------EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIne 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 780 LQTEDRWTIEIEKQRQIFEKEIKTlgiRVADAKRQNDELSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQE 859
Cdd:TIGR02169 404 LKRELDRLQEELQRLSEELADLNA---AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 860 LEtdkKTVKEFEIKYKKLESIFETEREKMNGERnrsknelAAMKKLKDDAEEHLKKLSD-DQKKNDAAWKIE-------- 930
Cdd:TIGR02169 481 VE---KELSKLQRELAEAEAQARASEERVRGGR-------AVEEVLKASIQGVHGTVAQlGSVGERYATAIEvaagnrln 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 931 ------KSKLEKDIALLKkqlpdehEMKESTAT--PQNSISGESSPLRRQDSEKML-----VLELKKQISILEKRIADSN 997
Cdd:TIGR02169 551 nvvvedDAVAKEAIELLK-------RRKAGRATflPLNKMRDERRDLSILSEDGVIgfavdLVEFDPKYEPAFKYVFGDT 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 998 ---SSLEECKiqnaELRDQLAKVQAnwekDKEVFQ--------HKTRKSEKLRTVEIDAMQQKFSSRMRIMEDTNKALHS 1066
Cdd:TIGR02169 624 lvvEDIEAAR----RLMGKYRMVTL----EGELFEksgamtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQS 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1067 QLVLARRERDTNKDALTNFEKQVTDERNNLKVKEKSANESTEKVKELQNRLTAKEEELERLNTDL-RLTKEARKADQILW 1145
Cdd:TIGR02169 696 ELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELkELEARIEELEEDLH 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1146 NIDRARNRNEKIDNTDSVETIRKQYRDCETFYSKEMDRLNDkITEITAEKNRQKNEAQKTIRVLSEQIKVLEIEQKNLSQ 1225
Cdd:TIGR02169 776 KLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLRE-IEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK 854
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 392927460 1226 NKDSQQVVKEMIESERERLQqiVHLNELQKltRKYRLSSIIDQLAYVSEATRKTSREAE 1284
Cdd:TIGR02169 855 EIENLNGKKEELEEELEELE--AALRDLES--RLGDLKKERDELEAQLRELERKIEELE 909
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
752-1279 |
3.14e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 752 DQLQTSIDEQANEISFYKKKNKDLTNQVLQTED--RWTIEIEKQRQIFEKEIKTLGIRVADAKRQNDELSELLesksttl 829
Cdd:PRK01156 169 DKLKDVIDMLRAEISNIDYLEEKLKSSNLELENikKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSAL------- 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 830 vektRSLEEQEERSKKLRAETELLRKDMQELETDKKTVKEFEIKYKKLES-IFETEREKMNGERNrSKNELAAMKKLKDD 908
Cdd:PRK01156 242 ----NELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINdPVYKNRNYINDYFK-YKNDIENKKQILSN 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 909 A-------EEHLKKLSDDQKKNDaawKIEKSKLEKDIalLKKQLPDEHEMKESTATPQNSIsgESSPLRRQDSEKMLVLE 981
Cdd:PRK01156 317 IdaeinkyHAIIKKLSVLQKDYN---DYIKKKSRYDD--LNNQILELEGYEMDYNSYLKSI--ESLKKKIEEYSKNIERM 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 982 LKKQISILEKRIADSNSSLEECKIQNAELRDQLAKVQANWEKDKEVFQHKTRKSEKLRTVEIDAMQQKFSSRMRIMEDTN 1061
Cdd:PRK01156 390 SAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNH 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1062 KALHSQLVLARRERDTNKdaLTNFEKQVTDERNNL-KVKEKSANESTEKVKELQNRLTAKEEELERLNTDLRLTKEAR-K 1139
Cdd:PRK01156 470 IINHYNEKKSRLEEKIRE--IEIEVKDIDEKIVDLkKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHdK 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1140 ADQILWNID-------RAR-----NRNEKIDNTDsVETIRKQYRDcetfYSKEMDRLNDKITEITAEKNRQKNEAQKTIR 1207
Cdd:PRK01156 548 YEEIKNRYKslkledlDSKrtswlNALAVISLID-IETNRSRSNE----IKKQLNDLESRLQEIEIGFPDDKSYIDKSIR 622
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 392927460 1208 VLSEQIKVLEIEQKNLSQNKDSQQVVKEMIESERERLQQIVHLNELQKlTRKYRLSSIIDQLAYVSEATRKT 1279
Cdd:PRK01156 623 EIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLK-EITSRINDIEDNLKKSRKALDDA 693
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
405-911 |
3.74e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 3.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 405 EDLKRTQIRLQD-VENENEELLKKLSKASKLRPPMIR-SASDGNAHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVEL 482
Cdd:TIGR04523 221 SELKKQNNQLKDnIEKKQQEINEKTTEISNTQTQLNQlKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 483 EADCKRGGVTSAHS--KAGEFKLTpEMEKDMSKMIVTISELERKNLELTTQVKQLETKVTPKpnfvvpsgttTTELRKEQ 560
Cdd:TIGR04523 301 NNQKEQDWNKELKSelKNQEKKLE-EIQNQISQNNKIISQLNEQISQLKKELTNSESENSEK----------QRELEEKQ 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 561 EKRKALEAQVNELKTTVFKSDNQKViSLATKIEQLNGQLQMVNERCNTLHK-KQVKDGEIQysdELKQKIEDLEKRLSEK 639
Cdd:TIGR04523 370 NEIEKLKKENQSYKQEIKNLESQIN-DLESKIQNQEKLNQQKDEQIKKLQQeKELLEKEIE---RLKETIIKNNSEIKDL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 640 LAIDSVSELQgkiptIDEIEQCCEVLaavETQTGRLCKQFEKIDHaqkderrrslskdsgaaiiaELANVMQEMKNVHQK 719
Cdd:TIGR04523 446 TNQDSVKELI-----IKNLDNTRESL---ETQLKVLSRSINKIKQ--------------------NLEQKQKELKSKEKE 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 720 LDKIKNVTPNtglsvkripSKENLLEIKcSKCDQLQTSIDEQANEISFYKKKNKDLTNQVLQTEDRWTIE-IEKQRQIFE 798
Cdd:TIGR04523 498 LKKLNEEKKE---------LEEKVKDLT-KKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKEnLEKEIDEKN 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 799 KEIKTLGIRVADAKRQNDELSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETDKKTVKEfeiKYKKLE 878
Cdd:TIGR04523 568 KEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKS---KKNKLK 644
|
490 500 510
....*....|....*....|....*....|...
gi 392927460 879 SIFETEREKMNGERNRSKNELAAMKKLKDDAEE 911
Cdd:TIGR04523 645 QEVKQIKETIKEIRNKWPEIIKKIKESKTKIDD 677
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
789-948 |
4.01e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 4.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 789 EIEKQRQIFEKEIKTLGIRVADAKRQNDELSELLESKSTTLVEKTRSLEEQEERSKKLRAetelLRKDMQELETDKKTVK 868
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEA----RIKKYEEQLGNVRNNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 869 EFEIKYKKLESI------FETEREKMNGERNRSKNELAAMKKLKDDAEEHLKKLSDDQKKNDAAWKIEKSKLEKDIALLK 942
Cdd:COG1579 90 EYEALQKEIESLkrrisdLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELA 169
|
....*.
gi 392927460 943 KQLPDE 948
Cdd:COG1579 170 AKIPPE 175
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
141-372 |
4.76e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 4.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 141 QSESSLINMLEDRLNQAENQIQDYRDENTVLKCELRELQETTfatsdEKLREKIRTTEGLCDELMEENEQLKAEVKDLQQ 220
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL-----AALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 221 EIEEMQDQYREEEIEEFRELqRELELNAKNCRvLQFKLRkterSRDQAEAEKMhseKKLDEYMNSCPEAVAASIKSDSAK 300
Cdd:COG4942 91 EIAELRAELEAQKEELAELL-RALYRLGRQPP-LALLLS----PEDFLDAVRR---LQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 392927460 301 VKELEYEIRVAKEvsvRLHNELEQTEEKRCKLEDEVFYLKEKVREIQTQNKWREARNKTDIA-VKRLSAEIAA 372
Cdd:COG4942 162 LAALRAELEAERA---ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQeAEELEALIAR 231
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
100-300 |
5.06e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 5.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 100 ENESEYIQTLKEEISQLRDINHSLKEEKAqwALRQRLQNAEQSESSL----------INMLEDRLNQAENQIQDYRDENT 169
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEK--ALLKQLAALERRIAALarriraleqeLAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 170 VLKCELREL----------QETTFATSDEKLREKIRTTEGL------CDELMEENEQLKAEVKDLQQEIEEMQDQyREEE 233
Cdd:COG4942 101 AQKEELAELlralyrlgrqPPLALLLSPEDFLDAVRRLQYLkylapaRREQAEELRADLAELAALRAELEAERAE-LEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392927460 234 IEEFRELQRELELNAKNCRVLQFKLRKTERSRDQAEAEKMHSEKKLDEYMNSCPEAVAASIKSDSAK 300
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
554-1248 |
5.95e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.58 E-value: 5.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 554 TELRKEQEKRKALEAQVNELKTTVFKSDNQKVISLATKIeqlngqlqmvnercntlhkkqvkdgeiqysdELKQKIEDL- 632
Cdd:TIGR01612 565 KELEEENEDSIHLEKEIKDLFDKYLEIDDEIIYINKLKL-------------------------------ELKEKIKNIs 613
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 633 EKRLSEKLAIDSVSELQGKIPTIDEIE-----QCCEVLAAVETQTGRLCKQFEKIDHAQKDERRRSLS---KDSGAAIIA 704
Cdd:TIGR01612 614 DKNEYIKKAIDLKKIIENNNAYIDELAkispyQVPEHLKNKDKIYSTIKSELSKIYEDDIDALYNELSsivKENAIDNTE 693
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 705 ELANVMQEMKNVHQKLDKIKNV-TPNTGLSVKRIPSKEN-LLEIKCSKCDQLQTSIDEQANEI-SFYKKKNKDLTNQVLQ 781
Cdd:TIGR01612 694 DKAKLDDLKSKIDKEYDKIQNMeTATVELHLSNIENKKNeLLDIIVEIKKHIHGEINKDLNKIlEDFKNKEKELSNKIND 773
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 782 TE------DRWTIEIEKQRQIFEKEIKTLGIRVADAKRQNDELSELLESKSTTLVEKTRSLEE----QEERSKKLRAETE 851
Cdd:TIGR01612 774 YAkekdelNKYKSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKEYIKTISIKEDEIFKIINEmkfmKDDFLNKVDKFIN 853
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 852 LLRKDMQELETDKKTVKEFEIKYKKlesifETEREKMNGERNRSKNELAAMKKLKDDAEEHLKKLsDDQKKNDAAWKIEK 931
Cdd:TIGR01612 854 FENNCKEKIDSEHEQFAELTNKIKA-----EISDDKLNDYEKKFNDSKSLINEINKSIEEEYQNI-NTLKKVDEYIKICE 927
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 932 SKLEKDIALLKKQLPDEHEMKESTATPQNSISGESSPLRRQDSekmlvlELKKQISILEKRIADsnSSLEECKIQNAELR 1011
Cdd:TIGR01612 928 NTKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKDKFDN------TLIDKINELDKAFKD--ASLNDYEAKNNELI 999
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1012 DQLAKVQANWEKDKE-VFQHKTRKSEKlrtvEIDAMQQKFSSRMRIMEDTNKALHSQLVLARRErdTNKDALTNFEKQVT 1090
Cdd:TIGR01612 1000 KYFNDLKANLGKNKEnMLYHQFDEKEK----ATNDIEQKIEDANKNIPNIEIAIHTSIYNIIDE--IEKEIGKNIELLNK 1073
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1091 DERNNLKVKEKSANESTEKVKELQNRLTAKEEELERLNTDLRLTKEARKADQilwNIDRARNRNEKIDNT--DSVETIRK 1168
Cdd:TIGR01612 1074 EILEEAEINITNFNEIKEKLKHYNFDDFGKEENIKYADEINKIKDDIKNLDQ---KIDHHIKALEEIKKKseNYIDEIKA 1150
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1169 QYRDCE-----TFYSKEMDRLNDKITEITAEKNRQKNEAQKTIRVLSE-------QIKVLEIEQKNLSQNKDSQQVVKEM 1236
Cdd:TIGR01612 1151 QINDLEdvadkAISNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEiaeiekdKTSLEEVKGINLSYGKNLGKLFLEK 1230
|
730
....*....|..
gi 392927460 1237 IESERERLQQIV 1248
Cdd:TIGR01612 1231 IDEEKKKSEHMI 1242
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
94-354 |
6.87e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.07 E-value: 6.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 94 RAITPTENESEYIQTL-KEEISQLRDINHSLKEEKAQWALRqrlqnaEQSE-SSLINMLEDrLNQAENQIQDYRDENTVL 171
Cdd:PRK05771 10 LIVTLKSYKDEVLEALhELGVVHIEDLKEELSNERLRKLRS------LLTKlSEALDKLRS-YLPKLNPLREEKKKVSVK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 172 KCE-LRELQETTFatsdEKLREKIRtteglcdELMEENEQLKAEVKDLQQEIEEMQdqyreeeieEFRELQRELELNAKN 250
Cdd:PRK05771 83 SLEeLIKDVEEEL----EKIEKEIK-------ELEEEISELENEIKELEQEIERLE---------PWGNFDLDLSLLLGF 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 251 CRVLQFKLRKterSRDQAEAEKMHSEKKLDEYMNSCPE---AVAASIKSDSAKVKEL-------EYEIRVAKEVSVRLHn 320
Cdd:PRK05771 143 KYVSVFVGTV---PEDKLEELKLESDVENVEYISTDKGyvyVVVVVLKELSDEVEEElkklgfeRLELEEEGTPSELIR- 218
|
250 260 270
....*....|....*....|....*....|....
gi 392927460 321 eleQTEEKRCKLEDEVFYLKEKVREIqtQNKWRE 354
Cdd:PRK05771 219 ---EIKEELEEIEKERESLLEELKEL--AKKYLE 247
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
91-228 |
7.57e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 7.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 91 EEERAITPTENESEYIQTLKEEISQLRDINHSLKEEKAQWALRQRLQNAEQSESSLINMLEDRLNQAENQIQDYRDENTV 170
Cdd:COG4717 331 PPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQ 410
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 392927460 171 LKCELRELQETTFATSDEKLREKIRTTEGLCDELMEENEQLKAEVKDLQQEIEEMQDQ 228
Cdd:COG4717 411 LEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
611-1128 |
8.03e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 8.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 611 KKQVKDGEIQYSDELKQKIEDLEKRLSEKLaiDSVSELQGKIPTIDEieqcceVLAAVETQTGRLCKQFEKIDHAQKDER 690
Cdd:PRK03918 177 RIERLEKFIKRTENIEELIKEKEKELEEVL--REINEISSELPELRE------ELEKLEKEVKELEELKEEIEELEKELE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 691 RRSLSKDSGAAIIAELANVMQEMKNVHQKLDKIknvtpntglsVKRIPSkenlleikcskcdqLQTSIDEQANEISFYKK 770
Cdd:PRK03918 249 SLEGSKRKLEEKIRELEERIEELKKEIEELEEK----------VKELKE--------------LKEKAEEYIKLSEFYEE 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 771 KNKDLTnqvlqtedrwtiEIEKQRQIFEKEIKTLGIRVADAKRQNDELSELLESKSTTLVEKTRSLEEQE--ERSKKLRA 848
Cdd:PRK03918 305 YLDELR------------EIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHElyEEAKAKKE 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 849 ETELLRKDMQELETDKKTVKEFEIKYKKLEsiFETEREKMNGERNRSKNELAAMKKlkddAEEHLKK-----------LS 917
Cdd:PRK03918 373 ELERLKKRLTGLTPEKLEKELEELEKAKEE--IEEEISKITARIGELKKEIKELKK----AIEELKKakgkcpvcgreLT 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 918 DDQKKN-DAAWKIEKSKLEKDIALLKKQlpdEHEMKESTATPQNSISGESSPLRRQDSEKMLVLELKKQISILEKRIADS 996
Cdd:PRK03918 447 EEHRKElLEEYTAELKRIEKELKEIEEK---ERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKK 523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 997 NSSLEECKIQNAELRDQLAKVQANWEKDKEVFQHKTRKSEKLRTVEidamqQKFSSRMRIMEdtNKALHSQLVLARRERD 1076
Cdd:PRK03918 524 AEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELE-----EELAELLKELE--ELGFESVEELEERLKE 596
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 392927460 1077 TNK-----DALTNFEKQVTDERNNLKVKEKSANESTEKVKELQNRLTAKEEELERLN 1128
Cdd:PRK03918 597 LEPfyneyLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELE 653
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
380-541 |
8.17e-03 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 40.60 E-value: 8.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 380 NEMSKELRdalereidlREQMRFSEEDLKRTQIRLQDVENEneelLKKLSKASKLRPPMIRSASDGN--AHLQLELAE-- 455
Cdd:COG3524 168 NQLSERAR---------EDAVRFAEEEVERAEERLRDAREA----LLAFRNRNGILDPEATAEALLQliATLEGQLAEle 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 456 --------------SQVQHLNTKIERLEKTNDHLNKKIVELEADckrggvTSAHSKAGEFKlTPEMEKDMSKMIVT--IS 519
Cdd:COG3524 235 aelaalrsylspnsPQVRQLRRRIAALEKQIAAERARLTGASGG------DSLASLLAEYE-RLELEREFAEKAYTsaLA 307
|
170 180
....*....|....*....|..
gi 392927460 520 ELERKNLELTTQVKQLETKVTP 541
Cdd:COG3524 308 ALEQARIEAARQQRYLAVIVQP 329
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
981-1171 |
8.88e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 8.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 981 ELKKQISILEKRIADSNSSLEECKIQNAELRDQLAKVQANWEKDKEVFQHKTRKSEKLRTVEIDAM------QQKFSSRM 1054
Cdd:COG4942 59 ALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALllspedFLDAVRRL 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 1055 RIMEDTNKALHSQ---LVLARRERDTNKDALTNFEKQVTDERNNLKVKEKSANESTEKVKELQNRLTAKEEELERLNTDL 1131
Cdd:COG4942 139 QYLKYLAPARREQaeeLRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAEL 218
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 392927460 1132 RltKEARKADQILWNIDRARNRNEKIDNTDSVETIRKQYR 1171
Cdd:COG4942 219 Q--QEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| UPF0242 |
pfam06785 |
Uncharacterized protein family (UPF0242) N-terminus; This region includes an N-terminal ... |
92-222 |
8.98e-03 |
|
Uncharacterized protein family (UPF0242) N-terminus; This region includes an N-terminal transmembrane region and a C-terminal coiled-coil.
Pssm-ID: 429117 [Multi-domain] Cd Length: 194 Bit Score: 39.42 E-value: 8.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 92 EERAITPTENESEYIQTLKEEISQLRDINHSLKEEKAQwaLRQRLQNAEQSESSLINMLEDRLNQAENQIQDYRDENTVL 171
Cdd:pfam06785 71 EEKEAKLTELDAEGFKILEETLEELQSEEERLEEELSQ--KEEELRRLTEENQQLQIQLQQISQDFAEFRLESEEQLAEK 148
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 392927460 172 KCELRELQETTfatsdEKLREKIrtteglcDELMEENEQLKAEVKDLQQEI 222
Cdd:pfam06785 149 QLLINEYQQTI-----EEQRSVL-------EKRQDQIENLESKVRDLNYEI 187
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
700-892 |
9.55e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 40.44 E-value: 9.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 700 AAIIAELANVMQEMKNVHQKLDKIKNVTPNTGLSVKRIPS--------KENLLEIKCSKcDQLQTSIDEQANEISFYKKK 771
Cdd:pfam05622 24 SLLQEEKNSLQQENKKLQERLDQLESGDDSGTPGGKKYLLlqkqleqlQEENFRLETAR-DDYRIKCEELEKEVLELQHR 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 772 NKDLT------------NQVLQTEDRWTIEIEKQRQIFEKEIKTLGirvaDAKRQndelSELLESKSTTLVEKTRSLEEQ 839
Cdd:pfam05622 103 NEELTslaeeaqalkdeMDILRESSDKVKKLEATVETYKKKLEDLG----DLRRQ----VKLLEERNAEYMQRTLQLEEE 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 392927460 840 EERSKKLRAETELLRKDMQEL-----ETDKKTVK-EFEikYKKLESIFET---EREKMNGER 892
Cdd:pfam05622 175 LKKANALRGQLETYKRQVQELhgklsEESKKADKlEFE--YKKLEEKLEAlqkEKERLIIER 234
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
680-959 |
9.85e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 9.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 680 EKIDHAQKDERRRSLSK---------DSGAAIIAELANVMQEMKnvhQKLDKIKNvtPNTGLSVKRIPSKENLLEIkcSK 750
Cdd:pfam17380 304 EKEEKAREVERRRKLEEaekarqaemDRQAAIYAEQERMAMERE---RELERIRQ--EERKRELERIRQEEIAMEI--SR 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 751 CDQLQTSIDEQaneisfyKKKNKDLTNQVLQTEDRWTIEIEKQRQIFEKEIKTLGIRVADAKRQNDELSELLESKSTTL- 829
Cdd:pfam17380 377 MRELERLQMER-------QQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMe 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392927460 830 ------------VEKTRSLEEQE-------ERSKKLRAETELLRKDM--QELETDKKTVKEFEIKYKKLE--------SI 880
Cdd:pfam17380 450 rvrleeqerqqqVERLRQQEEERkrkklelEKEKRDRKRAEEQRRKIleKELEERKQAMIEEERKRKLLEkemeerqkAI 529
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 392927460 881 FETEREKMNGERNRSKNELAAMKKLkddaEEHLKKLSDDQKKNDAawkiekskLEKDIALLKKQLPDEHEMKESTATPQ 959
Cdd:pfam17380 530 YEEERRREAEEERRKQQEMEERRRI----QEQMRKATEERSRLEA--------MEREREMMRQIVESEKARAEYEATTP 596
|
|
| |
