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Conserved domains on  [gi|392923044|ref|NP_001256882|]
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Doublesex- and mab-3-related transcription factor dmd-3 [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DM smart00301
Doublesex DNA-binding motif;
113-166 1.40e-18

Doublesex DNA-binding motif;


:

Pssm-ID: 214606  Cd Length: 54  Bit Score: 76.63  E-value: 1.40e-18
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 392923044   113 RRPNCQRCAQHSVVNRLKGHKRACPFRDCFCAKCQVVVERQKLMADQIKLRRRQ 166
Cdd:smart00301   1 RIPYCQKCENHGVKVPLKGHKPECPFRDCECEKCTLVEKRRALMALQIKLKREQ 54
DM pfam00751
DM DNA binding domain; The DM domain is named after dsx and mab-3. dsx contains a single ...
 15-60 6.06e-13

DM DNA binding domain; The DM domain is named after dsx and mab-3. dsx contains a single amino-terminal DM domain, whereas mab-3 contains two amino-terminal domains. The DM domain has a pattern of conserved zinc chelating residues C2H2C4. The dsx DM domain has been shown to dimerize and bind palindromic DNA.


:

Pssm-ID: 459924  Cd Length: 47  Bit Score: 61.53  E-value: 6.06e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 392923044   15 RVYYCQRCLNHGLREKRKNHKLSCTFRFCQCSNCIMVERRRQLNSR 60
Cdd:pfam00751   1 RSPKCARCRNHGVRVPLKGHKRYCPYRDCSCPKCLLVAERQRVMAA 46
 
Name Accession Description Interval E-value
DM smart00301
Doublesex DNA-binding motif;
113-166 1.40e-18

Doublesex DNA-binding motif;


Pssm-ID: 214606  Cd Length: 54  Bit Score: 76.63  E-value: 1.40e-18
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 392923044   113 RRPNCQRCAQHSVVNRLKGHKRACPFRDCFCAKCQVVVERQKLMADQIKLRRRQ 166
Cdd:smart00301   1 RIPYCQKCENHGVKVPLKGHKPECPFRDCECEKCTLVEKRRALMALQIKLKREQ 54
DM pfam00751
DM DNA binding domain; The DM domain is named after dsx and mab-3. dsx contains a single ...
 113-159 2.50e-18

DM DNA binding domain; The DM domain is named after dsx and mab-3. dsx contains a single amino-terminal DM domain, whereas mab-3 contains two amino-terminal domains. The DM domain has a pattern of conserved zinc chelating residues C2H2C4. The dsx DM domain has been shown to dimerize and bind palindromic DNA.


Pssm-ID: 459924  Cd Length: 47  Bit Score: 75.78  E-value: 2.50e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 392923044  113 RRPNCQRCAQHSVVNRLKGHKRACPFRDCFCAKCQVVVERQKLMADQ 159
Cdd:pfam00751   1 RSPKCARCRNHGVRVPLKGHKRYCPYRDCSCPKCLLVAERQRVMAAQ 47
DM pfam00751
DM DNA binding domain; The DM domain is named after dsx and mab-3. dsx contains a single ...
 15-60 6.06e-13

DM DNA binding domain; The DM domain is named after dsx and mab-3. dsx contains a single amino-terminal DM domain, whereas mab-3 contains two amino-terminal domains. The DM domain has a pattern of conserved zinc chelating residues C2H2C4. The dsx DM domain has been shown to dimerize and bind palindromic DNA.


Pssm-ID: 459924  Cd Length: 47  Bit Score: 61.53  E-value: 6.06e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 392923044   15 RVYYCQRCLNHGLREKRKNHKLSCTFRFCQCSNCIMVERRRQLNSR 60
Cdd:pfam00751   1 RSPKCARCRNHGVRVPLKGHKRYCPYRDCSCPKCLLVAERQRVMAA 46
DM smart00301
Doublesex DNA-binding motif;
15-61 1.01e-09

Doublesex DNA-binding motif;


Pssm-ID: 214606  Cd Length: 54  Bit Score: 53.13  E-value: 1.01e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 392923044    15 RVYYCQRCLNHGLREKRKNHKLSCTFRFCQCSNCIMVERRRQLNSRL 61
Cdd:smart00301   1 RIPYCQKCENHGVKVPLKGHKPECPFRDCECEKCTLVEKRRALMALQ 47
 
Name Accession Description Interval E-value
DM smart00301
Doublesex DNA-binding motif;
113-166 1.40e-18

Doublesex DNA-binding motif;


Pssm-ID: 214606  Cd Length: 54  Bit Score: 76.63  E-value: 1.40e-18
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 392923044   113 RRPNCQRCAQHSVVNRLKGHKRACPFRDCFCAKCQVVVERQKLMADQIKLRRRQ 166
Cdd:smart00301   1 RIPYCQKCENHGVKVPLKGHKPECPFRDCECEKCTLVEKRRALMALQIKLKREQ 54
DM pfam00751
DM DNA binding domain; The DM domain is named after dsx and mab-3. dsx contains a single ...
 113-159 2.50e-18

DM DNA binding domain; The DM domain is named after dsx and mab-3. dsx contains a single amino-terminal DM domain, whereas mab-3 contains two amino-terminal domains. The DM domain has a pattern of conserved zinc chelating residues C2H2C4. The dsx DM domain has been shown to dimerize and bind palindromic DNA.


Pssm-ID: 459924  Cd Length: 47  Bit Score: 75.78  E-value: 2.50e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 392923044  113 RRPNCQRCAQHSVVNRLKGHKRACPFRDCFCAKCQVVVERQKLMADQ 159
Cdd:pfam00751   1 RSPKCARCRNHGVRVPLKGHKRYCPYRDCSCPKCLLVAERQRVMAAQ 47
DM pfam00751
DM DNA binding domain; The DM domain is named after dsx and mab-3. dsx contains a single ...
 15-60 6.06e-13

DM DNA binding domain; The DM domain is named after dsx and mab-3. dsx contains a single amino-terminal DM domain, whereas mab-3 contains two amino-terminal domains. The DM domain has a pattern of conserved zinc chelating residues C2H2C4. The dsx DM domain has been shown to dimerize and bind palindromic DNA.


Pssm-ID: 459924  Cd Length: 47  Bit Score: 61.53  E-value: 6.06e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 392923044   15 RVYYCQRCLNHGLREKRKNHKLSCTFRFCQCSNCIMVERRRQLNSR 60
Cdd:pfam00751   1 RSPKCARCRNHGVRVPLKGHKRYCPYRDCSCPKCLLVAERQRVMAA 46
DM smart00301
Doublesex DNA-binding motif;
15-61 1.01e-09

Doublesex DNA-binding motif;


Pssm-ID: 214606  Cd Length: 54  Bit Score: 53.13  E-value: 1.01e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 392923044    15 RVYYCQRCLNHGLREKRKNHKLSCTFRFCQCSNCIMVERRRQLNSRL 61
Cdd:smart00301   1 RIPYCQKCENHGVKVPLKGHKPECPFRDCECEKCTLVEKRRALMALQ 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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