|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 super family |
cl31754 |
MAEBL; Provisional |
436-752 |
1.61e-05 |
|
MAEBL; Provisional
The actual alignment was detected with superfamily member PTZ00121:
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 436 KASDAWDTTKDKAGEAKDKMGEAWDHTKDKAGEAKDKASDAADDAQGKSKSMTEKIGDSISGAWESTKDTAVSAKDKTAE 515
Cdd:PTZ00121 1195 KAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKA 1274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 516 AAGKVGDSISGAYDTVKEKASDIADSFKAHSTDSKDNVENKAADAYNSAKDKASDAWDKTKDKAGDAKdKAADAWDTTKD 595
Cdd:PTZ00121 1275 EEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK-KAAEAAKAEAE 1353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 596 KAGDAWDSTKDHAADAKDKASDAAGDAKDKSKSLTEKAgdaisgAYDSVKEKASDiaDSFKAHSTNSKDNVENKASDAYN 675
Cdd:PTZ00121 1354 AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK------KADEAKKKAEE--DKKKADELKKAAAAKKKADEAKK 1425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 676 SA--KDKASDAWDKT--KDKAGEAKDKAGDA--WDNTKDKAGNA--WDSTKDKASDA--WDTTKDKASDAKESAGDAADS 745
Cdd:PTZ00121 1426 KAeeKKKADEAKKKAeeAKKADEAKKKAEEAkkAEEAKKKAEEAkkADEAKKKAEEAkkADEAKKKAEEAKKKADEAKKA 1505
|
....*..
gi 392920142 746 AKDKSKS 752
Cdd:PTZ00121 1506 AEAKKKA 1512
|
|
| GvpP super family |
cl44178 |
Gas vesicle protein YhaH [General function prediction only]; |
715-791 |
9.25e-04 |
|
Gas vesicle protein YhaH [General function prediction only];
The actual alignment was detected with superfamily member COG4980:
Pssm-ID: 444004 [Multi-domain] Cd Length: 106 Bit Score: 39.57 E-value: 9.25e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392920142 715 DSTKDKASDAWDTTKDKASDAKESAGDAADSAKDKSKSITETIGDKIsgayDSVKEKASDVADSFKAHSSDAQDTVE 791
Cdd:COG4980 34 KKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKI----EELKEEVEPKIEELKEEAEKLQKEVE 106
|
|
| ElaB super family |
cl44086 |
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ... |
185-265 |
2.91e-03 |
|
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];
The actual alignment was detected with superfamily member COG4575:
Pssm-ID: 443632 [Multi-domain] Cd Length: 108 Bit Score: 38.00 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 185 NAHKTGEALNDNYESVKESASEAADRLKEPAQNTADNAKDLANQTGEEMSDAFESVKQLTSDTAENAKENAHDAADTAKS 264
Cdd:COG4575 2 ANTKTTTSVEDSKEDLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAADD 81
|
.
gi 392920142 265 Y 265
Cdd:COG4575 82 Y 82
|
|
| Apolipoprotein super family |
cl27567 |
Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a ... |
193-355 |
6.04e-03 |
|
Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein E.
The actual alignment was detected with superfamily member pfam01442:
Pssm-ID: 460211 [Multi-domain] Cd Length: 175 Bit Score: 38.40 E-value: 6.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 193 LNDNYESVKESASEAADRLKEPAQNTADN----AKDLANQTGEEMSDAFESVKQLTSDTAENAKENAHDAADTAKSYKDK 268
Cdd:pfam01442 2 LEDSLDELSTYAEELQEQLGPVAQELVDRlekeTEALRERLQKDLEEVRAKLEPYLEELQAKLGQNVEELRQRLEPYTEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 269 AGEKASGILDSFKAHASDAKDSVENKASDAYNSAKDKAGDAWDSTKDAAG----DAKDKTKSFTEKVGDKISGAYDSVKE 344
Cdd:pfam01442 82 LRKRLNADAEELQEKLAPYGEELRERLEQNVDALRARLAPYAEELRQKLAerleELKESLAPYAEEVQAQLSQRLQELRE 161
|
170
....*....|.
gi 392920142 345 KASDVADSFKA 355
Cdd:pfam01442 162 KLEPQAEDLRE 172
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
436-752 |
1.61e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 436 KASDAWDTTKDKAGEAKDKMGEAWDHTKDKAGEAKDKASDAADDAQGKSKSMTEKIGDSISGAWESTKDTAVSAKDKTAE 515
Cdd:PTZ00121 1195 KAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKA 1274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 516 AAGKVGDSISGAYDTVKEKASDIADSFKAHSTDSKDNVENKAADAYNSAKDKASDAWDKTKDKAGDAKdKAADAWDTTKD 595
Cdd:PTZ00121 1275 EEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK-KAAEAAKAEAE 1353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 596 KAGDAWDSTKDHAADAKDKASDAAGDAKDKSKSLTEKAgdaisgAYDSVKEKASDiaDSFKAHSTNSKDNVENKASDAYN 675
Cdd:PTZ00121 1354 AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK------KADEAKKKAEE--DKKKADELKKAAAAKKKADEAKK 1425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 676 SA--KDKASDAWDKT--KDKAGEAKDKAGDA--WDNTKDKAGNA--WDSTKDKASDA--WDTTKDKASDAKESAGDAADS 745
Cdd:PTZ00121 1426 KAeeKKKADEAKKKAeeAKKADEAKKKAEEAkkAEEAKKKAEEAkkADEAKKKAEEAkkADEAKKKAEEAKKKADEAKKA 1505
|
....*..
gi 392920142 746 AKDKSKS 752
Cdd:PTZ00121 1506 AEAKKKA 1512
|
|
| GvpP |
COG4980 |
Gas vesicle protein YhaH [General function prediction only]; |
715-791 |
9.25e-04 |
|
Gas vesicle protein YhaH [General function prediction only];
Pssm-ID: 444004 [Multi-domain] Cd Length: 106 Bit Score: 39.57 E-value: 9.25e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392920142 715 DSTKDKASDAWDTTKDKASDAKESAGDAADSAKDKSKSITETIGDKIsgayDSVKEKASDVADSFKAHSSDAQDTVE 791
Cdd:COG4980 34 KKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKI----EELKEEVEPKIEELKEEAEKLQKEVE 106
|
|
| GvpP |
COG4980 |
Gas vesicle protein YhaH [General function prediction only]; |
686-757 |
9.90e-04 |
|
Gas vesicle protein YhaH [General function prediction only];
Pssm-ID: 444004 [Multi-domain] Cd Length: 106 Bit Score: 39.18 E-value: 9.90e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 392920142 686 DKTKDKAGEAKDKAGDAWDNTKDKAGNAWDSTKDKASDAWDTTKDKASDAKESAGDAADSAKDKSKSITETI 757
Cdd:COG4980 34 KKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEEVEPKIEELKEEAEKLQKEV 105
|
|
| ElaB |
COG4575 |
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ... |
185-265 |
2.91e-03 |
|
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];
Pssm-ID: 443632 [Multi-domain] Cd Length: 108 Bit Score: 38.00 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 185 NAHKTGEALNDNYESVKESASEAADRLKEPAQNTADNAKDLANQTGEEMSDAFESVKQLTSDTAENAKENAHDAADTAKS 264
Cdd:COG4575 2 ANTKTTTSVEDSKEDLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAADD 81
|
.
gi 392920142 265 Y 265
Cdd:COG4575 82 Y 82
|
|
| Apolipoprotein |
pfam01442 |
Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a ... |
193-355 |
6.04e-03 |
|
Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein E.
Pssm-ID: 460211 [Multi-domain] Cd Length: 175 Bit Score: 38.40 E-value: 6.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 193 LNDNYESVKESASEAADRLKEPAQNTADN----AKDLANQTGEEMSDAFESVKQLTSDTAENAKENAHDAADTAKSYKDK 268
Cdd:pfam01442 2 LEDSLDELSTYAEELQEQLGPVAQELVDRlekeTEALRERLQKDLEEVRAKLEPYLEELQAKLGQNVEELRQRLEPYTEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 269 AGEKASGILDSFKAHASDAKDSVENKASDAYNSAKDKAGDAWDSTKDAAG----DAKDKTKSFTEKVGDKISGAYDSVKE 344
Cdd:pfam01442 82 LRKRLNADAEELQEKLAPYGEELRERLEQNVDALRARLAPYAEELRQKLAerleELKESLAPYAEEVQAQLSQRLQELRE 161
|
170
....*....|.
gi 392920142 345 KASDVADSFKA 355
Cdd:pfam01442 162 KLEPQAEDLRE 172
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
402-741 |
9.26e-03 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 39.51 E-value: 9.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 402 DTTKDKAGDAWDTTKDKAGDGKGKAGDAWDTTKDKASDAWDTTKDKAGEAKDKMGEAWDHTKDKAGEAKDKASDAADDAQ 481
Cdd:NF033609 560 DSDSDPGSDSGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASD 639
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 482 GKSKSMTEKIGDSISGAWESTKDTAVSAKDKTAEAAGKVGDSISGAYDTVKEKASDIADSFKAHSTDSKDNVENKAADAY 561
Cdd:NF033609 640 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 719
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 562 NSAKDKASDAWDKTKDKAGDAKDKAADAWDTTKDKAGDAWDSTKDHAADAKDKASDAAGDAKDKSKSLTEKAGDAISGAY 641
Cdd:NF033609 720 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 799
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 642 DSVKEKASDIADSFKAHSTNSKDNVENKASDAYNSAKDKASDAWDKTKDKAGEAKDKAGDAWDNTKDKAGNAWDSTKDKA 721
Cdd:NF033609 800 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSESGSNNNVVPPNSPK 879
|
330 340
....*....|....*....|
gi 392920142 722 SDAWDTTKDKASDAKESAGD 741
Cdd:NF033609 880 NGTNASNKNEAKDSKEPLPD 899
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
436-752 |
1.61e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 436 KASDAWDTTKDKAGEAKDKMGEAWDHTKDKAGEAKDKASDAADDAQGKSKSMTEKIGDSISGAWESTKDTAVSAKDKTAE 515
Cdd:PTZ00121 1195 KAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKA 1274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 516 AAGKVGDSISGAYDTVKEKASDIADSFKAHSTDSKDNVENKAADAYNSAKDKASDAWDKTKDKAGDAKdKAADAWDTTKD 595
Cdd:PTZ00121 1275 EEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK-KAAEAAKAEAE 1353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 596 KAGDAWDSTKDHAADAKDKASDAAGDAKDKSKSLTEKAgdaisgAYDSVKEKASDiaDSFKAHSTNSKDNVENKASDAYN 675
Cdd:PTZ00121 1354 AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK------KADEAKKKAEE--DKKKADELKKAAAAKKKADEAKK 1425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 676 SA--KDKASDAWDKT--KDKAGEAKDKAGDA--WDNTKDKAGNA--WDSTKDKASDA--WDTTKDKASDAKESAGDAADS 745
Cdd:PTZ00121 1426 KAeeKKKADEAKKKAeeAKKADEAKKKAEEAkkAEEAKKKAEEAkkADEAKKKAEEAkkADEAKKKAEEAKKKADEAKKA 1505
|
....*..
gi 392920142 746 AKDKSKS 752
Cdd:PTZ00121 1506 AEAKKKA 1512
|
|
| PRK05901 |
PRK05901 |
RNA polymerase sigma factor; Provisional |
543-753 |
2.28e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 235640 [Multi-domain] Cd Length: 509 Bit Score: 44.60 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 543 KAHSTDSKDNVENKAADAYNSAKDKASDAWDKTKDKAGDAKDKAADAWDTTKDKAGDAWDSTKDHAADAKDKASDAAGDA 622
Cdd:PRK05901 14 EEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAK 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 623 KDKSKSLTEKAgDAISGAYDSVKEKASDIADSFKAHSTNSKDNVENKASDAYNSAKDKASDAWDKTKDKAGEAKDKAGDA 702
Cdd:PRK05901 94 KKLKDELDSSK-KAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEK 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 392920142 703 wDNTKDKAGNAWDSTKDKASDAWDTTKDKASDAKesAGDAADSAKDKSKSI 753
Cdd:PRK05901 173 -KEAKELEKLSDDDDFVWDEDDSEALRQARKDAK--LTATADPVKAYLKQI 220
|
|
| GvpP |
COG4980 |
Gas vesicle protein YhaH [General function prediction only]; |
715-791 |
9.25e-04 |
|
Gas vesicle protein YhaH [General function prediction only];
Pssm-ID: 444004 [Multi-domain] Cd Length: 106 Bit Score: 39.57 E-value: 9.25e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392920142 715 DSTKDKASDAWDTTKDKASDAKESAGDAADSAKDKSKSITETIGDKIsgayDSVKEKASDVADSFKAHSSDAQDTVE 791
Cdd:COG4980 34 KKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKI----EELKEEVEPKIEELKEEAEKLQKEVE 106
|
|
| GvpP |
COG4980 |
Gas vesicle protein YhaH [General function prediction only]; |
686-757 |
9.90e-04 |
|
Gas vesicle protein YhaH [General function prediction only];
Pssm-ID: 444004 [Multi-domain] Cd Length: 106 Bit Score: 39.18 E-value: 9.90e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 392920142 686 DKTKDKAGEAKDKAGDAWDNTKDKAGNAWDSTKDKASDAWDTTKDKASDAKESAGDAADSAKDKSKSITETI 757
Cdd:COG4980 34 KKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEEVEPKIEELKEEAEKLQKEV 105
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
142-794 |
1.85e-03 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 41.92 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 142 GDAEDSMIQGAYDAKDSAKESASNAGNKISNAFTSLKDSITGDNAHKTGEALNDNYESVKESASEAADRLKEPAQNTADN 221
Cdd:COG5271 211 PGDSVAADDDLAAEEGASAVVEEEDASEDAVAAADETLLADDDDTESAGATAEVGGTPDTDDEATDDADGLEAAEDDALD 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 222 AKDLANQTGEEMSDAFESVKQLTSDTAENAKENAHDAADTAKSYKDKAGEKASgildsfkAHASDAKDSVENKASDAYNS 301
Cdd:COG5271 291 AELTAAQAADPESDDDADDSTLAALEGAAEDTEIATADELAAADDEDDDDSAA-------EDAAEEAATAEDSAAEDTQD 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 302 AKDKAGDAWDSTKDAAGDAKDKTKSFTEKVGDKISGAYDSVKEKASDVADSFKAHSTDSKDNVENKAADAYNTAKDKASD 381
Cdd:COG5271 364 AEDEAAGEAADESEGADTDAAADEADAAADDSADDEEASADGGTSPTSDTDEEEEEADEDASAGETEDESTDVTSAEDDI 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 382 AWDKTKDKAGEAKDKMGDAWDTTKDKAGDAWDTTKDKAGDGKGKAGDAWDTTKDKASDAWDTTKDKAGEAKDKMGEAWDH 461
Cdd:COG5271 444 ATDEEADSLADEEEEAEAELDTEEDTESAEEDADGDEATDEDDASDDGDEEEAEEDAEAEADSDELTAEETSADDGADTD 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 462 TKDKAGEAKDKASDAADDAQGKSKSM---TEKIGDSISGAWESTKDTAVSAKDKTAEAAGKVGDSISGAYDTVKEKASDI 538
Cdd:COG5271 524 AAADPEDSDEDALEDETEGEENAPGSdqdADETDEPEATAEEDEPDEAEAETEDATENADADETEESADESEEAEASEDE 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 539 ADSFKAHSTDSKDNVENKAADAYNSAKDKASDAWDKTKDKAGDAKDKAADAWDTTKDKAGDAWDSTKDHAaDAKDKASDA 618
Cdd:COG5271 604 AAEEEEADDDEADADADGAADEEETEEEAAEDEAAEPETDASEAADEDADAETEAEASADESEEEAEDES-ETSSEDAEE 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 619 AGDAKDKSKSLTEKAGDAISGAYDSVKEKASDIADSFKAHSTNSKD---NVENKASDAYNSAKDKASDAWDKTKDKAGEA 695
Cdd:COG5271 683 DADAAAAEASDDEEETEEADEDAETASEEADAEEADTEADGTAEEAeeaAEEAESADEEAASLPDEADAEEEAEEAEEAE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 696 KDKAGDAWDNTKDKAGNAWDSTKDKASDAWDTTKDKASDAKESAGDAADSAKDKSKSITETIGDKISGAYDSVKEKASDV 775
Cdd:COG5271 763 EDDADGLEEALEEEKADAEEAATDEEAEAAAEEKEKVADEDQDTDEDALLDEAEADEEEDLDGEDEETADEALEDIEAGI 842
|
650
....*....|....*....
gi 392920142 776 ADSFKAHSSDAQDTVEVSH 794
Cdd:COG5271 843 AEDDEEDDDAAAAKDVDAD 861
|
|
| ElaB |
COG4575 |
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ... |
185-265 |
2.91e-03 |
|
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];
Pssm-ID: 443632 [Multi-domain] Cd Length: 108 Bit Score: 38.00 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 185 NAHKTGEALNDNYESVKESASEAADRLKEPAQNTADNAKDLANQTGEEMSDAFESVKQLTSDTAENAKENAHDAADTAKS 264
Cdd:COG4575 2 ANTKTTTSVEDSKEDLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAADD 81
|
.
gi 392920142 265 Y 265
Cdd:COG4575 82 Y 82
|
|
| Apolipoprotein |
pfam01442 |
Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a ... |
193-355 |
6.04e-03 |
|
Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein E.
Pssm-ID: 460211 [Multi-domain] Cd Length: 175 Bit Score: 38.40 E-value: 6.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 193 LNDNYESVKESASEAADRLKEPAQNTADN----AKDLANQTGEEMSDAFESVKQLTSDTAENAKENAHDAADTAKSYKDK 268
Cdd:pfam01442 2 LEDSLDELSTYAEELQEQLGPVAQELVDRlekeTEALRERLQKDLEEVRAKLEPYLEELQAKLGQNVEELRQRLEPYTEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 269 AGEKASGILDSFKAHASDAKDSVENKASDAYNSAKDKAGDAWDSTKDAAG----DAKDKTKSFTEKVGDKISGAYDSVKE 344
Cdd:pfam01442 82 LRKRLNADAEELQEKLAPYGEELRERLEQNVDALRARLAPYAEELRQKLAerleELKESLAPYAEEVQAQLSQRLQELRE 161
|
170
....*....|.
gi 392920142 345 KASDVADSFKA 355
Cdd:pfam01442 162 KLEPQAEDLRE 172
|
|
| GvpP |
COG4980 |
Gas vesicle protein YhaH [General function prediction only]; |
602-673 |
7.46e-03 |
|
Gas vesicle protein YhaH [General function prediction only];
Pssm-ID: 444004 [Multi-domain] Cd Length: 106 Bit Score: 36.87 E-value: 7.46e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 392920142 602 DSTKDHAADAKDKASDAAGDAKDKSKSLTEKAGDAISGAYDSVKEKASDIADSFKAHSTNSKDNVENKASDA 673
Cdd:COG4980 34 KKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEEVEPKIEELKEEAEKLQKEV 105
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
48-742 |
7.57e-03 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 40.00 E-value: 7.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 48 DSYAEELLEAKLINTDESSNTTHNKMSFMDKVKDTANSAyESVENTAVGAKDGVVGAFNTVGEKIGGAYDSTKQYASDKV 127
Cdd:COG5271 338 DDDSAAEDAAEEAATAEDSAAEDTQDAEDEAAGEAADES-EGADTDAAADEADAAADDSADDEEASADGGTSPTSDTDEE 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 128 SAAGDYASEAGKKVGDAEDSMIQGAYDAKDSAKESASNAGNKISNAFTSLKDSITGDNAhKTGEALNDNYESVKESASEA 207
Cdd:COG5271 417 EEEADEDASAGETEDESTDVTSAEDDIATDEEADSLADEEEEAEAELDTEEDTESAEED-ADGDEATDEDDASDDGDEEE 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 208 ADRLKEPAQNTADNAKDLANQTGEEMSDAFESVKQLTSDTAENAKENAHDAAD---TAKSYKDKAGEKASGILDSFKAHA 284
Cdd:COG5271 496 AEEDAEAEADSDELTAEETSADDGADTDAAADPEDSDEDALEDETEGEENAPGsdqDADETDEPEATAEEDEPDEAEAET 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 285 SDAKDSVENKASDAYNSAKDKAGDAWDSTKDAAGDAKDKTKSFTEKVGDKISGAYDSVKEKASDVADSFKAHSTDSKDNV 364
Cdd:COG5271 576 EDATENADADETEESADESEEAEASEDEAAEEEEADDDEADADADGAADEEETEEEAAEDEAAEPETDASEAADEDADAE 655
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 365 ENKAADAyntakDKASDAWDKTKDKAGEAKDKMGDAWDTTKDKAGDAWDTTKDKAGDGKGKAGDAWDTTKDKASDAWDTT 444
Cdd:COG5271 656 TEAEASA-----DESEEEAEDESETSSEDAEEDADAAAAEASDDEEETEEADEDAETASEEADAEEADTEADGTAEEAEE 730
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 445 KDKAGEAKDKMGEAWDHTKDKAGEAKDKASDAADDAQGKSKSMTEKIGDSISGAWESTKDTAVSAKDKTAEAAGKVGDSI 524
Cdd:COG5271 731 AAEEAESADEEAASLPDEADAEEEAEEAEEAEEDDADGLEEALEEEKADAEEAATDEEAEAAAEEKEKVADEDQDTDEDA 810
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 525 SGAYDTVKEKASDIADSFKAHSTDSKDNVENKAADAYNSAKDKASDAWDKTKDKAGDAKDKAADAWDTTKDKAGDAWDST 604
Cdd:COG5271 811 LLDEAEADEEEDLDGEDEETADEALEDIEAGIAEDDEEDDDAAAAKDVDADLDLDADLAADEHEAEEAQEAETDADADAD 890
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 605 KDHAADAKDKASDAAGDAKDKSKSLTEKAGDAISGAYDSVKEKASDIADSFKAHSTNSKDNVENKASDAYNSAKDKASDA 684
Cdd:COG5271 891 AGEADSSGESSAAAEDDDAAEDADSDDGANDEDDDDDAEEERKDAEEDELGAAEDDLDALALDEAGDEESDDAAADDAGD 970
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 392920142 685 WDKTKDKAGEAKDKAGDAWDNTKDKAGNAWDSTKDKASDAWDTTKDKASDAKESAGDA 742
Cdd:COG5271 971 DSLADDDEALADAADDAEADDSELDASESTGEAEGDEDDDELEDGEAAAGEATADLAA 1028
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
122-788 |
7.83e-03 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 40.00 E-value: 7.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 122 YASDKVSAAGDYASEAGKKVGDAEDSMIQGAYDAKDSAKESASNAGNKISNAFTSLKDSITGDNAHKTGEALNDNYESVK 201
Cdd:COG5271 126 SSGDAQGDPLATDTLGGGDLDLATKDGDELLPSLADNDEAAADEGDELAADGDDTLAVADAIEATPGGTDAVELTATLGA 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 202 ESASEAADRLKEPAQNTADNAKDLANQTGEEMSDAFESVKQLTSDTAENAKENAHDAADTAKSYKDKAGEKASGILDSFK 281
Cdd:COG5271 206 TVTTDPGDSVAADDDLAAEEGASAVVEEEDASEDAVAAADETLLADDDDTESAGATAEVGGTPDTDDEATDDADGLEAAE 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 282 AHASDAKDSVENKASDAYNSAKDKAGDAWDSTKDAAGDAKDKTKSFTEKVGDKISGAYDSVKEKASDVADSFKAHSTDSK 361
Cdd:COG5271 286 DDALDAELTAAQAADPESDDDADDSTLAALEGAAEDTEIATADELAAADDEDDDDSAAEDAAEEAATAEDSAAEDTQDAE 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 362 DNVENKAADAYNTAKDKASDAWDKTKDKAGEAKDKMGDAWDTTKDKAGDAWDTTKDKAGDGKGKAGDAWDTTKDKASDAW 441
Cdd:COG5271 366 DEAAGEAADESEGADTDAAADEADAAADDSADDEEASADGGTSPTSDTDEEEEEADEDASAGETEDESTDVTSAEDDIAT 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 442 DTTKDKAGEAKDKMGEAWDHTKDKAGEAKDKASDAADDAQGKSKSMTEKIGDSISGAWESTKDTAVSAK------DKTAE 515
Cdd:COG5271 446 DEEADSLADEEEEAEAELDTEEDTESAEEDADGDEATDEDDASDDGDEEEAEEDAEAEADSDELTAEETsaddgaDTDAA 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 516 AAGKVGDSISGAYDTVKEKASDIADSFKAHSTDSKDNVENKAADAYNSAKDKASDAWD--------KTKDKAGDAKDKAA 587
Cdd:COG5271 526 ADPEDSDEDALEDETEGEENAPGSDQDADETDEPEATAEEDEPDEAEAETEDATENADadeteesaDESEEAEASEDEAA 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 588 DAWDTTKDKAGDAWDSTKDHAADAKDKASDAAGDAKDKSKSLTEKAGDAISGAYDSVKEKASDIADSFKAHSTNSKDNVE 667
Cdd:COG5271 606 EEEEADDDEADADADGAADEEETEEEAAEDEAAEPETDASEAADEDADAETEAEASADESEEEAEDESETSSEDAEEDAD 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 668 NKASDAYNSAKDKAS--DAWDKTKDKAGEAKDKAGDAWDNTKDKAGNAWDSTKDKASDAWDTTKDKASDAKESAGDAADS 745
Cdd:COG5271 686 AAAAEASDDEEETEEadEDAETASEEADAEEADTEADGTAEEAEEAAEEAESADEEAASLPDEADAEEEAEEAEEAEEDD 765
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 392920142 746 AKDKSKSITETIGDKISGAYDSVKEKASDVADSFKAHSSDAQD 788
Cdd:COG5271 766 ADGLEEALEEEKADAEEAATDEEAEAAAEEKEKVADEDQDTDE 808
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
402-741 |
9.26e-03 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 39.51 E-value: 9.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 402 DTTKDKAGDAWDTTKDKAGDGKGKAGDAWDTTKDKASDAWDTTKDKAGEAKDKMGEAWDHTKDKAGEAKDKASDAADDAQ 481
Cdd:NF033609 560 DSDSDPGSDSGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASD 639
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 482 GKSKSMTEKIGDSISGAWESTKDTAVSAKDKTAEAAGKVGDSISGAYDTVKEKASDIADSFKAHSTDSKDNVENKAADAY 561
Cdd:NF033609 640 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 719
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 562 NSAKDKASDAWDKTKDKAGDAKDKAADAWDTTKDKAGDAWDSTKDHAADAKDKASDAAGDAKDKSKSLTEKAGDAISGAY 641
Cdd:NF033609 720 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 799
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392920142 642 DSVKEKASDIADSFKAHSTNSKDNVENKASDAYNSAKDKASDAWDKTKDKAGEAKDKAGDAWDNTKDKAGNAWDSTKDKA 721
Cdd:NF033609 800 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSESGSNNNVVPPNSPK 879
|
330 340
....*....|....*....|
gi 392920142 722 SDAWDTTKDKASDAKESAGD 741
Cdd:NF033609 880 NGTNASNKNEAKDSKEPLPD 899
|
|
| GvpP |
COG4980 |
Gas vesicle protein YhaH [General function prediction only]; |
668-739 |
9.41e-03 |
|
Gas vesicle protein YhaH [General function prediction only];
Pssm-ID: 444004 [Multi-domain] Cd Length: 106 Bit Score: 36.49 E-value: 9.41e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 392920142 668 NKASDAYNSAKDKASDAWDKTKDKAGEAKDKAGDAWDNTKDKAGNAWDSTKDKASDAWDTTKDKASDAKESA 739
Cdd:COG4980 34 KKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEIKEKIEELKEEVEPKIEELKEEAEKLQKEV 105
|
|
| |
