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Conserved domains on  [gi|390608657|ref|NP_001254628|]
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small ribosomal subunit protein eS1 isoform 2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S3Ae super family cl00821
Ribosomal S3Ae family;
21-49 2.30e-12

Ribosomal S3Ae family;


The actual alignment was detected with superfamily member pfam01015:

Pssm-ID: 469941  Cd Length: 191  Bit Score: 57.88  E-value: 2.30e-12
                          10        20
                  ....*....|....*....|....*....
gi 390608657   21 VVDPFSKKDWYDVKAPAMFNIRNIGKTLV 49
Cdd:pfam01015   6 VVDKWKKKEWYDVKAPSMFGGREIGKTPA 34
 
Name Accession Description Interval E-value
Ribosomal_S3Ae pfam01015
Ribosomal S3Ae family;
21-49 2.30e-12

Ribosomal S3Ae family;


Pssm-ID: 425987  Cd Length: 191  Bit Score: 57.88  E-value: 2.30e-12
                          10        20
                  ....*....|....*....|....*....
gi 390608657   21 VVDPFSKKDWYDVKAPAMFNIRNIGKTLV 49
Cdd:pfam01015   6 VVDKWKKKEWYDVKAPSMFGGREIGKTPA 34
PRK04057 PRK04057
30S ribosomal protein S3Ae; Validated
 21-48 7.67e-03

30S ribosomal protein S3Ae; Validated


Pssm-ID: 235216  Cd Length: 203  Bit Score: 32.16  E-value: 7.67e-03
                         10        20
                 ....*....|....*....|....*...
gi 390608657  21 VVDPFSKKDWYDVKAPAMFNIRNIGKTL 48
Cdd:PRK04057   2 VKDKWKEKKWYTVYAPEFFGGVEIGETP 29
 
Name Accession Description Interval E-value
Ribosomal_S3Ae pfam01015
Ribosomal S3Ae family;
21-49 2.30e-12

Ribosomal S3Ae family;


Pssm-ID: 425987  Cd Length: 191  Bit Score: 57.88  E-value: 2.30e-12
                          10        20
                  ....*....|....*....|....*....
gi 390608657   21 VVDPFSKKDWYDVKAPAMFNIRNIGKTLV 49
Cdd:pfam01015   6 VVDKWKKKEWYDVKAPSMFGGREIGKTPA 34
PRK04057 PRK04057
30S ribosomal protein S3Ae; Validated
 21-48 7.67e-03

30S ribosomal protein S3Ae; Validated


Pssm-ID: 235216  Cd Length: 203  Bit Score: 32.16  E-value: 7.67e-03
                         10        20
                 ....*....|....*....|....*...
gi 390608657  21 VVDPFSKKDWYDVKAPAMFNIRNIGKTL 48
Cdd:PRK04057   2 VKDKWKEKKWYTVYAPEFFGGVEIGETP 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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