NCBI Conserved Domain Search

Conserved domains on [gi|392887198|ref|NP_001251586|]

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Nuclear transcription factor Y subunit nfya-2 [Caenorhabditis elegans]

Protein Classification

CCAAT-binding transcription factor( domain architecture ID 10488957)

CCAAT-binding transcription factor such as the nuclear transcription factor Y subunit alpha, which is a component of the sequence-specific heterotrimeric transcription factor (NF-Y) which specifically recognizes a 5'-CCAAT-3' box motif found in the promoters of its target genes

Gene Ontology: GO:0003677|GO:0003700|GO:0006366|GO:0016602|GO:0000981

PubMed: 1549471

Graphical summary

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List of domain hits

Name

Accession

Description

Interval

E-value

CBFB_NFYA

pfam02045

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;

147-201

3.12e-22

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;

Pssm-ID: 396572 Cd Length: 56 Bit Score: 86.86 E-value: 3.12e-22

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 392887198  147 KPIMVNPRQYKRIIKRREMRQKMEDSGRLPLERQKYMHESRRQHALKRRR-TGGRF 201
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKLEAEGKLPKNRKPYLHESRHKHAMRRPRgPGGRF 56

Name

Accession

Description

Interval

E-value

CBFB_NFYA

pfam02045

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;

147-201

3.12e-22

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;

Pssm-ID: 396572 Cd Length: 56 Bit Score: 86.86 E-value: 3.12e-22

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 392887198  147 KPIMVNPRQYKRIIKRREMRQKMEDSGRLPLERQKYMHESRRQHALKRRR-TGGRF 201
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKLEAEGKLPKNRKPYLHESRHKHAMRRPRgPGGRF 56

HAP2

COG5224

CCAAT-binding factor, subunit B [Transcription];

111-201

3.74e-06

CCAAT-binding factor, subunit B [Transcription];

Pssm-ID: 227549 [Multi-domain] Cd Length: 248 Bit Score: 47.11 E-value: 3.74e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392887198 111 PQSVLESINQHQNQLRQGNAQAVHYYQKHQ-------NPIShEKPIMVNPRQYKRIIKRREMRQKMEDSgrLPLERQKYM 183
Cdd:COG5224  117 TDSNTSNLMSSGSQLGSFATQSTNGNNSTTtttssaaHPGS-FQPDYVNAKQGNEISKRPGLRVYLDDS--VSAGRAFYL 193

                         90
                 ....*....|....*....
gi 392887198 184 HESRRQHALKR-RRTGGRF 201
Cdd:COG5224  194 HESRHKHAMLRvRDPTGRF 212

Name

Accession

Description

Interval

E-value

CBFB_NFYA

pfam02045

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;

147-201

3.12e-22

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;

Pssm-ID: 396572 Cd Length: 56 Bit Score: 86.86 E-value: 3.12e-22

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 392887198  147 KPIMVNPRQYKRIIKRREMRQKMEDSGRLPLERQKYMHESRRQHALKRRR-TGGRF 201
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKLEAEGKLPKNRKPYLHESRHKHAMRRPRgPGGRF 56

HAP2

COG5224

CCAAT-binding factor, subunit B [Transcription];

111-201

3.74e-06

CCAAT-binding factor, subunit B [Transcription];

Pssm-ID: 227549 [Multi-domain] Cd Length: 248 Bit Score: 47.11 E-value: 3.74e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392887198 111 PQSVLESINQHQNQLRQGNAQAVHYYQKHQ-------NPIShEKPIMVNPRQYKRIIKRREMRQKMEDSgrLPLERQKYM 183
Cdd:COG5224  117 TDSNTSNLMSSGSQLGSFATQSTNGNNSTTtttssaaHPGS-FQPDYVNAKQGNEISKRPGLRVYLDDS--VSAGRAFYL 193

                         90
                 ....*....|....*....
gi 392887198 184 HESRRQHALKR-RRTGGRF 201
Cdd:COG5224  194 HESRHKHAMLRvRDPTGRF 212

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01