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Conserved domains on  [gi|386765756|ref|NP_001247098|]
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suppressor of hairy wing, isoform C [Drosophila melanogaster]

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 11472214)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

CATH:  3.30.160.60
Gene Ontology:  GO:0008270|GO:0003677
PubMed:  11361095|22803940
SCOP:  4003583

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
312-517 6.59e-08

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 56.24  E-value: 6.59e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756 312 THSEFSDFPCSICNANLRSEALLALH------EEQHKSRGKPYACKICGKDFTRSYHLKRHQKYSSCSSNETDTMSCKV- 384
Cdd:COG5048  248 LSSSDSSSSASESPRSSLPTASSQSSspnesdSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYs 327

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756 385 -CDRVFYRLDNLRSHLKQHlgTQVVKKPEYMCHTCKN---CFYSLSTLNIHIR-THTGEKPFDCDL--CDKKFSALVALK 457
Cdd:COG5048  328 lCGKLFSRNDALKRHILLH--TSISPAKEKLLNSSSKfspLLNNEPPQSLQQYkDLKNDKKSETLSnsCIRNFKRDSNLS 405

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 386765756 458 KHRRYHTGEKPYSC--TVCNQAFAVKEVLNRHMKRHTGERPHKCDECGKSFIQATqLRTHSK 517
Cdd:COG5048  406 LHIITHLSFRPYNCknPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLD-LSNHGK 466
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
467-620 4.84e-05

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 47.00  E-value: 4.84e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756 467 KPYSCTVCNQAFAVKEVLNRHM--KRHTGE--RPHKCDE--CGKSFIQATQLRTHSKTH--IRPFPC--EQCDEKF---K 533
Cdd:COG5048  288 LPIKSKQCNISFSRSSPLTRHLrsVNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHtsISPAKEklLNSSSKFsplL 367

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756 534 TEKQLERHVKTHSRTKRPVFSCA--ECKRNFRTPALLKEHmdegkhspKQQRSSMRSAVKimertDCAICDKNFDSSDTL 611
Cdd:COG5048  368 NNEPPQSLQQYKDLKNDKKSETLsnSCIRNFKRDSNLSLH--------IITHLSFRPYNC-----KNPPCSKSFNRHYNL 434


                 ....*....
gi 386765756 612 RRHIRTVHE 620
Cdd:COG5048  435 IPHKKIHTN 443
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
312-517 6.59e-08

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 56.24  E-value: 6.59e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756 312 THSEFSDFPCSICNANLRSEALLALH------EEQHKSRGKPYACKICGKDFTRSYHLKRHQKYSSCSSNETDTMSCKV- 384
Cdd:COG5048  248 LSSSDSSSSASESPRSSLPTASSQSSspnesdSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYs 327

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756 385 -CDRVFYRLDNLRSHLKQHlgTQVVKKPEYMCHTCKN---CFYSLSTLNIHIR-THTGEKPFDCDL--CDKKFSALVALK 457
Cdd:COG5048  328 lCGKLFSRNDALKRHILLH--TSISPAKEKLLNSSSKfspLLNNEPPQSLQQYkDLKNDKKSETLSnsCIRNFKRDSNLS 405

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 386765756 458 KHRRYHTGEKPYSC--TVCNQAFAVKEVLNRHMKRHTGERPHKCDECGKSFIQATqLRTHSK 517
Cdd:COG5048  406 LHIITHLSFRPYNCknPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLD-LSNHGK 466
zf-H2C2_2 pfam13465
Zinc-finger double domain;
484-508 9.04e-07

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 45.83  E-value: 9.04e-07
                          10        20
                  ....*....|....*....|....*
gi 386765756  484 LNRHMKRHTGERPHKCDECGKSFIQ 508
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
467-620 4.84e-05

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 47.00  E-value: 4.84e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756 467 KPYSCTVCNQAFAVKEVLNRHM--KRHTGE--RPHKCDE--CGKSFIQATQLRTHSKTH--IRPFPC--EQCDEKF---K 533
Cdd:COG5048  288 LPIKSKQCNISFSRSSPLTRHLrsVNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHtsISPAKEklLNSSSKFsplL 367

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756 534 TEKQLERHVKTHSRTKRPVFSCA--ECKRNFRTPALLKEHmdegkhspKQQRSSMRSAVKimertDCAICDKNFDSSDTL 611
Cdd:COG5048  368 NNEPPQSLQQYKDLKNDKKSETLsnSCIRNFKRDSNLSLH--------IITHLSFRPYNC-----KNPPCSKSFNRHYNL 434


                 ....*....
gi 386765756 612 RRHIRTVHE 620
Cdd:COG5048  435 IPHKKIHTN 443
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 523-545 9.23e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 34.58  E-value: 9.23e-03
                          10        20
                  ....*....|....*....|...
gi 386765756  523 FPCEQCDEKFKTEKQLERHVKTH 545
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
312-517 6.59e-08

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 56.24  E-value: 6.59e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756 312 THSEFSDFPCSICNANLRSEALLALH------EEQHKSRGKPYACKICGKDFTRSYHLKRHQKYSSCSSNETDTMSCKV- 384
Cdd:COG5048  248 LSSSDSSSSASESPRSSLPTASSQSSspnesdSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYs 327

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756 385 -CDRVFYRLDNLRSHLKQHlgTQVVKKPEYMCHTCKN---CFYSLSTLNIHIR-THTGEKPFDCDL--CDKKFSALVALK 457
Cdd:COG5048  328 lCGKLFSRNDALKRHILLH--TSISPAKEKLLNSSSKfspLLNNEPPQSLQQYkDLKNDKKSETLSnsCIRNFKRDSNLS 405

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 386765756 458 KHRRYHTGEKPYSC--TVCNQAFAVKEVLNRHMKRHTGERPHKCDECGKSFIQATqLRTHSK 517
Cdd:COG5048  406 LHIITHLSFRPYNCknPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLD-LSNHGK 466
zf-H2C2_2 pfam13465
Zinc-finger double domain;
484-508 9.04e-07

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 45.83  E-value: 9.04e-07
                          10        20
                  ....*....|....*....|....*
gi 386765756  484 LNRHMKRHTGERPHKCDECGKSFIQ 508
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
409-487 1.54e-05

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 48.54  E-value: 1.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756 409 KKPEYMCHTCKNCFYSLSTLNIHIRTHTGEKPFDC--DLCDKKFSALVALKKHRRYHTGEKPYSctvCNQAFAVKEVLNR 486
Cdd:COG5048   30 APRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCsySGCDKSFSRPLELSRHLRTHHNNPSDL---NSKSLPLSNSKAS 106


                 .
gi 386765756 487 H 487
Cdd:COG5048  107 S 107
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
467-620 4.84e-05

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 47.00  E-value: 4.84e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756 467 KPYSCTVCNQAFAVKEVLNRHM--KRHTGE--RPHKCDE--CGKSFIQATQLRTHSKTH--IRPFPC--EQCDEKF---K 533
Cdd:COG5048  288 LPIKSKQCNISFSRSSPLTRHLrsVNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHtsISPAKEklLNSSSKFsplL 367

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756 534 TEKQLERHVKTHSRTKRPVFSCA--ECKRNFRTPALLKEHmdegkhspKQQRSSMRSAVKimertDCAICDKNFDSSDTL 611
Cdd:COG5048  368 NNEPPQSLQQYKDLKNDKKSETLsnSCIRNFKRDSNLSLH--------IITHLSFRPYNC-----KNPPCSKSFNRHYNL 434


                 ....*....
gi 386765756 612 RRHIRTVHE 620
Cdd:COG5048  435 IPHKKIHTN 443
zf-H2C2_2 pfam13465
Zinc-finger double domain;
428-451 1.78e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 39.28  E-value: 1.78e-04
                          10        20
                  ....*....|....*....|....
gi 386765756  428 LNIHIRTHTGEKPFDCDLCDKKFS 451
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFK 25
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
290-453 3.12e-04

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 44.30  E-value: 3.12e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756 290 INCPDCPKSFKTQTSYERHIFITHSEFSDFPCSICNANL------RSEALLALHEEQHKSRgkPYACKI--CGKDFTRS- 360
Cdd:COG5048  290 IKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLcgklfsRNDALKRHILLHTSIS--PAKEKLlnSSSKFSPLl 367

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756 361 ---YHLKRHQKYSSCSSNETDTMSCKvCDRVFYRLDNLRSHLKQHLGTQVVKKPEYMCHTCKNCFYSLStlnIHIRTHTG 437
Cdd:COG5048  368 nnePPQSLQQYKDLKNDKKSETLSNS-CIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLI---PHKKIHTN 443

                        170
                 ....*....|....*.
gi 386765756 438 EKPFDCDLCDKKFSAL 453
Cdd:COG5048  444 HAPLLCSILKSFRRDL 459
zf-H2C2_2 pfam13465
Zinc-finger double domain;
455-479 5.94e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 37.74  E-value: 5.94e-04
                          10        20
                  ....*....|....*....|....*
gi 386765756  455 ALKKHRRYHTGEKPYSCTVCNQAFA 479
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
290-642 1.51e-03

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 41.99  E-value: 1.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756 290 INCPDCPKSFKTQTSYERHIFItHSEFSDFPCSICNANLRSEALLALHEEQ-HKSRGKPYACKICGKDftrSYHLKRHQK 368
Cdd:COG5048   34 DSCPNCTDSFSRLEHLTRHIRS-HTGEKPSQCSYSGCDKSFSRPLELSRHLrTHHNNPSDLNSKSLPL---SNSKASSSS 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756 369 YSSCSSNETDTMSCKVCDRVFYRLDNLRSHLKQHlgTQVVKKPEYMC----HTCKNCFYSLSTLNIHIRTHTGEKPFDCD 444
Cdd:COG5048  110 LSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSI--SNLRNNPLPGNnsssVNTPQSNSLHPPLPANSLSKDPSSNLSLL 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756 445 LCDkkfsalvalkkhrRYHTGEKPYSCTVCNQAFAVKEVLNRHMKRHTGERPHKCDEC--GKSFIQATQLRTHSKTHIRP 522
Cdd:COG5048  188 ISS-------------NVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNsqLSPKSLLSQSPSSLSSSDSS 254

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756 523 FPCEQCDEKFKTEKQLERHVKTHS-----RTKRPVFSCAECKRNFRTPALLKEHMDEGKHSPKQQRSSMrsavkimerTD 597
Cdd:COG5048  255 SSASESPRSSLPTASSQSSSPNESdssseKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFS---------CP 325

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 386765756 598 CAICDKNFDSSDTLRRHIRTvHECDPDDIFGVEPHPSKRAKKDIE 642
Cdd:COG5048  326 YSLCGKLFSRNDALKRHILL-HTSISPAKEKLLNSSSKFSPLLNN 369
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 345-400 2.34e-03

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 41.63  E-value: 2.34e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 386765756 345 GKPYACKI--CGKDFTRSYHLKRHQKYSSCSSNETDTMS---------------CKVCDRVFYRLDNLRSHLK 400
Cdd:COG5189  347 GKPYKCPVegCNKKYKNQNGLKYHMLHGHQNQKLHENPSpekmnifsakdkpyrCEVCDKRYKNLNGLKYHRK 419
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 497-519 3.02e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 35.74  E-value: 3.02e-03
                          10        20
                  ....*....|....*....|...
gi 386765756  497 HKCDECGKSFIQATQLRTHSKTH 519
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 348-368 3.82e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 35.74  E-value: 3.82e-03
                          10        20
                  ....*....|....*....|.
gi 386765756  348 YACKICGKDFTRSYHLKRHQK 368
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLR 21
zf-C2H2_8 pfam15909
C2H2-type zinc ribbon; This family carries three zinc-fingers in tandem.
 468-551 5.31e-03

C2H2-type zinc ribbon; This family carries three zinc-fingers in tandem.


Pssm-ID: 464935 [Multi-domain]  Cd Length: 98  Bit Score: 37.40  E-value: 5.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386765756  468 PYSCTVCNQAFAVKEVLNRHMKRHTGE------RPHKCD--ECGKSFIQATQLRTHSKTHIRP---FPCEQCDEKFKTEK 536
Cdd:pfam15909   1 PCSSPGCCLSFPSVRDLAQHLRTHCPPtqslegKLFRCSalSCTETFPSMQELVAHSKLHYKPnryFKCENCLLRFRTHR 80

                          90
                  ....*....|....*...
gi 386765756  537 QLERHVKT---HSRTKRP 551
Cdd:pfam15909  81 SLFKHLHVcaeHAQSPAP 98
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 523-545 9.23e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 34.58  E-value: 9.23e-03
                          10        20
                  ....*....|....*....|...
gi 386765756  523 FPCEQCDEKFKTEKQLERHVKTH 545
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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