|
Name |
Accession |
Description |
Interval |
E-value |
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
157-459 |
9.29e-20 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 92.30 E-value: 9.29e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 157 RLRELKFVIQNNARLDYIPTmIIEPLKNLSSIVIEYSQVEIVKSyAFANLPFLERIILNNNHIMALDqDAFANHIRLREL 236
Cdd:COG4886 111 NLTNLESLDLSGNQLTDLPE-ELANLTNLKELDLSNNQLTDLPE-PLGNLTNLKSLDLSNNQLTDLP-EELGNLTNLKEL 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 237 NLEHNQIFEMDrYAFRNLPLCERLFLNNNNISTLHEGLfADMARLTFLNLAHNQINVLTSeiFRGLGNLNVLKLTRNNLN 316
Cdd:COG4886 188 DLSNNQITDLP-EPLGNLTNLEELDLSGNQLTDLPEPL-ANLTNLETLDLSNNQLTDLPE--LGNLTNLEELDLSNNQLT 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 317 FIGDTvfAELWSLSELELDDNRIERISERALDGLNTLKTL----NLRNNLLKKIDNGLLRGTPALLSINVQANKLETLTF 392
Cdd:COG4886 264 DLPPL--ANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLllllLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLA 341
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 386770621 393 YTFQPIMDNLVNSTSELLVSDNKFICDCRLQWIFELKNRTRHLQLRDSLEDLHCTLQEPKLSHFVDP 459
Cdd:COG4886 342 LSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLALL 408
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
232-291 |
1.27e-12 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 62.93 E-value: 1.27e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 232 RLRELNLEHNQIFEMDRYAFRNLPLCERLFLNNNNISTLHEGLFADMARLTFLNLAHNQI 291
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
214-366 |
2.58e-11 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 63.65 E-value: 2.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 214 LNNNHIMALDQDAFANHirLRELNLEHNQIFEMDRyaFRNLPLCERLFLNNNNISTLhEGLfADMARLTFLNLAHNQI-- 291
Cdd:cd21340 31 LYDNKITKIENLEFLTN--LTHLYLQNNQIEKIEN--LENLVNLKKLYLGGNRISVV-EGL-ENLTNLEELHIENQRLpp 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 292 -NVLTSEIF--RGLGN-LNVLKLTRNNLNFIGDtvFAELWSLSELELDDNRIERISE--RALDGLNTLKTLNLRNNLLKK 365
Cdd:cd21340 105 gEKLTFDPRslAALSNsLRVLNISGNNIDSLEP--LAPLRNLEQLDASNNQISDLEEllDLLSSWPSLRELDLTGNPVCK 182
|
.
gi 386770621 366 I 366
Cdd:cd21340 183 K 183
|
|
| LRRCT |
smart00082 |
Leucine rich repeat C-terminal domain; |
414-450 |
1.49e-06 |
|
Leucine rich repeat C-terminal domain;
Pssm-ID: 214507 [Multi-domain] Cd Length: 51 Bit Score: 45.50 E-value: 1.49e-06
10 20 30
....*....|....*....|....*....|....*..
gi 386770621 414 NKFICDCRLQWIFELKNRTRHLQLRdslEDLHCTLQE 450
Cdd:smart00082 1 NPFICDCELRWLLRWLQANEHLQDP---VDLRCASPS 34
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
205-384 |
1.21e-05 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 48.69 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 205 NLPFLERIILNNNHIMALDQDAFANHiRLRELNLEHNQIFEMDRYAFRNLPLCERLFLNNNNISTLHEGLFADMARLTFL 284
Cdd:PLN00113 450 DMPSLQMLSLARNKFFGGLPDSFGSK-RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 285 NLAHNQinvLTSEIFRGlgnlnvlkltrnnlnfigdtvFAELWSLSELELDDNRIERISERALDGLNTLKTLNLRNNLLk 364
Cdd:PLN00113 529 DLSHNQ---LSGQIPAS---------------------FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL- 583
|
170 180
....*....|....*....|
gi 386770621 365 kidNGLLRGTPALLSINVQA 384
Cdd:PLN00113 584 ---HGSLPSTGAFLAINASA 600
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
157-459 |
9.29e-20 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 92.30 E-value: 9.29e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 157 RLRELKFVIQNNARLDYIPTmIIEPLKNLSSIVIEYSQVEIVKSyAFANLPFLERIILNNNHIMALDqDAFANHIRLREL 236
Cdd:COG4886 111 NLTNLESLDLSGNQLTDLPE-ELANLTNLKELDLSNNQLTDLPE-PLGNLTNLKSLDLSNNQLTDLP-EELGNLTNLKEL 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 237 NLEHNQIFEMDrYAFRNLPLCERLFLNNNNISTLHEGLfADMARLTFLNLAHNQINVLTSeiFRGLGNLNVLKLTRNNLN 316
Cdd:COG4886 188 DLSNNQITDLP-EPLGNLTNLEELDLSGNQLTDLPEPL-ANLTNLETLDLSNNQLTDLPE--LGNLTNLEELDLSNNQLT 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 317 FIGDTvfAELWSLSELELDDNRIERISERALDGLNTLKTL----NLRNNLLKKIDNGLLRGTPALLSINVQANKLETLTF 392
Cdd:COG4886 264 DLPPL--ANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLllllLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLA 341
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 386770621 393 YTFQPIMDNLVNSTSELLVSDNKFICDCRLQWIFELKNRTRHLQLRDSLEDLHCTLQEPKLSHFVDP 459
Cdd:COG4886 342 LSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLALL 408
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
205-416 |
2.14e-17 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 84.99 E-value: 2.14e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 205 NLPFLERIILNNNHIMALDQDAFANHIRLRELNLEHNQifemdryAFRNLPLCERLFLNNNNISTLHEGLfADMARLTFL 284
Cdd:COG4886 70 SLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNE-------ELSNLTNLESLDLSGNQLTDLPEEL-ANLTNLKEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 285 NLAHNQINVLTSEIFrGLGNLNVLKLTRNNLNFIGDtVFAELWSLSELELDDNRIERISErALDGLNTLKTLNLRNNLLK 364
Cdd:COG4886 142 DLSNNQLTDLPEPLG-NLTNLKSLDLSNNQLTDLPE-ELGNLTNLKELDLSNNQITDLPE-PLGNLTNLEELDLSGNQLT 218
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 386770621 365 KIDNGlLRGTPALLSINVQANKLETLtfytfqPIMDNLVNSTsELLVSDNKF 416
Cdd:COG4886 219 DLPEP-LANLTNLETLDLSNNQLTDL------PELGNLTNLE-ELDLSNNQL 262
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
156-391 |
6.45e-13 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 71.12 E-value: 6.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 156 KRLRELKFviqNNARLDYIPTMIiEPLKNLSSIVIEYSQVEIVkSYAFANLPFLERIILNNNHIMALDqDAFANHIRLRE 235
Cdd:COG4886 159 TNLKSLDL---SNNQLTDLPEEL-GNLTNLKELDLSNNQITDL-PEPLGNLTNLEELDLSGNQLTDLP-EPLANLTNLET 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 236 LNLEHNQIFEMDryAFRNLPLCERLFLNNNNISTLHEglFADMARLTFLNLAHNQINVLTSEIFRGLGNLNVLKLTRNNL 315
Cdd:COG4886 233 LDLSNNQLTDLP--ELGNLTNLEELDLSNNQLTDLPP--LANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLL 308
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386770621 316 NFIGDTVFAELWSLSELELDDNRIERISERALDGLNTLKTLNLRNNLLKKIDNGLLRGTPALLSINVQANKLETLT 391
Cdd:COG4886 309 NLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLAL 384
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
232-291 |
1.27e-12 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 62.93 E-value: 1.27e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 232 RLRELNLEHNQIFEMDRYAFRNLPLCERLFLNNNNISTLHEGLFADMARLTFLNLAHNQI 291
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
214-366 |
2.58e-11 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 63.65 E-value: 2.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 214 LNNNHIMALDQDAFANHirLRELNLEHNQIFEMDRyaFRNLPLCERLFLNNNNISTLhEGLfADMARLTFLNLAHNQI-- 291
Cdd:cd21340 31 LYDNKITKIENLEFLTN--LTHLYLQNNQIEKIEN--LENLVNLKKLYLGGNRISVV-EGL-ENLTNLEELHIENQRLpp 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 292 -NVLTSEIF--RGLGN-LNVLKLTRNNLNFIGDtvFAELWSLSELELDDNRIERISE--RALDGLNTLKTLNLRNNLLKK 365
Cdd:cd21340 105 gEKLTFDPRslAALSNsLRVLNISGNNIDSLEP--LAPLRNLEQLDASNNQISDLEEllDLLSSWPSLRELDLTGNPVCK 182
|
.
gi 386770621 366 I 366
Cdd:cd21340 183 K 183
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
304-363 |
6.57e-10 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 55.22 E-value: 6.57e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 304 NLNVLKLTRNNLNFIGDTVFAELWSLSELELDDNRIERISERALDGLNTLKTLNLRNNLL 363
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
280-339 |
7.61e-10 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 55.22 E-value: 7.61e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 280 RLTFLNLAHNQINVLTSEIFRGLGNLNVLKLTRNNLNFIGDTVFAELWSLSELELDDNRI 339
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
258-315 |
6.42e-09 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 52.53 E-value: 6.42e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 386770621 258 ERLFLNNNNISTLHEGLFADMARLTFLNLAHNQINVLTSEIFRGLGNLNVLKLTRNNL 315
Cdd:pfam13855 4 RSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
214-385 |
7.90e-09 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 56.33 E-value: 7.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 214 LNNNHIMALDQDAFANHirLRELNLEHNQIFEMDryAFRNLPLCERLFLNNNNISTLhEGLFAdMARLTFLNLAHNQINV 293
Cdd:cd21340 9 LNDKNITKIDNLSLCKN--LKVLYLYDNKITKIE--NLEFLTNLTHLYLQNNQIEKI-ENLEN-LVNLKKLYLGGNRISV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 294 LtsEIFRGLGNLNVLKLTRNNLN------FIGDTVFAELWSLSELELDDNRIERISEraLDGLNTLKTLNLRNNLLKKID 367
Cdd:cd21340 83 V--EGLENLTNLEELHIENQRLPpgekltFDPRSLAALSNSLRVLNISGNNIDSLEP--LAPLRNLEQLDASNNQISDLE 158
|
170 180
....*....|....*....|
gi 386770621 368 N--GLLRGTPALLSINVQAN 385
Cdd:cd21340 159 EllDLLSSWPSLRELDLTGN 178
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
328-387 |
1.39e-08 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 51.37 E-value: 1.39e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 328 SLSELELDDNRIERISERALDGLNTLKTLNLRNNLLKKIDNGLLRGTPALLSINVQANKL 387
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRR_5 |
pfam13306 |
BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich ... |
184-306 |
4.79e-07 |
|
BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.
Pssm-ID: 463839 [Multi-domain] Cd Length: 127 Bit Score: 49.08 E-value: 4.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 184 NLSSIVIEYSqVEIVKSYAFANLPFLERIILNNNhIMALDQDAFANhIRLRELNLeHNQIFEMDRYAFRNLPLCERLFLn 263
Cdd:pfam13306 12 SLTSITIPSS-LTSIGEYAFSNCTSLKSITLPSS-LTSIGSYAFYN-CSLTSITI-PSSLTSIGEYAFSNCSNLKSITL- 86
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 386770621 264 NNNISTLHEGLFADMaRLTFLNLaHNQINVLTSEIFRGLGNLN 306
Cdd:pfam13306 87 PSNLTSIGSYAFSNC-SLKSITI-PSSVTTIGSYAFSNCSNLK 127
|
|
| LRRCT |
smart00082 |
Leucine rich repeat C-terminal domain; |
414-450 |
1.49e-06 |
|
Leucine rich repeat C-terminal domain;
Pssm-ID: 214507 [Multi-domain] Cd Length: 51 Bit Score: 45.50 E-value: 1.49e-06
10 20 30
....*....|....*....|....*....|....*..
gi 386770621 414 NKFICDCRLQWIFELKNRTRHLQLRdslEDLHCTLQE 450
Cdd:smart00082 1 NPFICDCELRWLLRWLQANEHLQDP---VDLRCASPS 34
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
205-384 |
1.21e-05 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 48.69 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 205 NLPFLERIILNNNHIMALDQDAFANHiRLRELNLEHNQIFEMDRYAFRNLPLCERLFLNNNNISTLHEGLFADMARLTFL 284
Cdd:PLN00113 450 DMPSLQMLSLARNKFFGGLPDSFGSK-RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 285 NLAHNQinvLTSEIFRGlgnlnvlkltrnnlnfigdtvFAELWSLSELELDDNRIERISERALDGLNTLKTLNLRNNLLk 364
Cdd:PLN00113 529 DLSHNQ---LSGQIPAS---------------------FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL- 583
|
170 180
....*....|....*....|
gi 386770621 365 kidNGLLRGTPALLSINVQA 384
Cdd:PLN00113 584 ---HGSLPSTGAFLAINASA 600
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
225-416 |
2.02e-05 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 46.96 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 225 DAFANHIRLRELNLEHN-------QIFEmdryAFRNLPLCERLFLNNNNISTLHEGLFAD-----MARLTFLNLAHNQIN 292
Cdd:cd00116 75 QGLTKGCGLQELDLSDNalgpdgcGVLE----SLLRSSSLQELKLNNNGLGDRGLRLLAKglkdlPPALEKLVLGRNRLE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 293 VL----TSEIFRGLGNLNVLKLTRNNLNFIGDTV----FAELWSLSELELDDNRIERISERALDG----LNTLKTLNLRN 360
Cdd:cd00116 151 GAsceaLAKALRANRDLKELNLANNGIGDAGIRAlaegLKANCNLEVLDLNNNGLTDEGASALAEtlasLKSLEVLNLGD 230
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 386770621 361 NLLK-----KIDNGLLRGTPALLSINVQANKLETLTFYTFQPIMDNLVnSTSELLVSDNKF 416
Cdd:cd00116 231 NNLTdagaaALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKE-SLLELDLRGNKF 290
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
200-363 |
2.39e-05 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 47.92 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 200 SYAFANLPFLERIILNNNHIMA-LDQDAFANHIRLRELNLEHNQIFEMDRYAFrnLPLCERLFLNNNNIS---TLHEGLF 275
Cdd:PLN00113 86 SSAIFRLPYIQTINLSNNQLSGpIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSgeiPNDIGSF 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 276 ---------------------ADMARLTFLNLAHNQinvLTSEIFRGLGNLNVLK---LTRNNLNFIGDTVFAELWSLSE 331
Cdd:PLN00113 164 sslkvldlggnvlvgkipnslTNLTSLEFLTLASNQ---LVGQIPRELGQMKSLKwiyLGYNNLSGEIPYEIGGLTSLNH 240
|
170 180 190
....*....|....*....|....*....|..
gi 386770621 332 LELDDNRIERISERALDGLNTLKTLNLRNNLL 363
Cdd:PLN00113 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
184-243 |
2.52e-05 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 42.13 E-value: 2.52e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 184 NLSSIVIEYSQVEIVKSYAFANLPFLERIILNNNHIMALDQDAFANHIRLRELNLEHNQI 243
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
201-361 |
9.75e-05 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 45.04 E-value: 9.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 201 YAFANLPFLERIILNNNHI--MALDQDAFA---NHIRLRELNLEHNQifemdryafRNLPLCERLFLNNNNISTLHEglf 275
Cdd:cd00116 102 ESLLRSSSLQELKLNNNGLgdRGLRLLAKGlkdLPPALEKLVLGRNR---------LEGASCEALAKALRANRDLKE--- 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 276 admarltfLNLAHNQINV----LTSEIFRGLGNLNVLKLTRNNLNFIGDTVFAE----LWSLSELELDDNRIERISERAL 347
Cdd:cd00116 170 --------LNLANNGIGDagirALAEGLKANCNLEVLDLNNNGLTDEGASALAEtlasLKSLEVLNLGDNNLTDAGAAAL 241
|
170
....*....|....*....
gi 386770621 348 D-----GLNTLKTLNLRNN 361
Cdd:cd00116 242 AsallsPNISLLTLSLSCN 260
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
209-387 |
4.93e-04 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 43.24 E-value: 4.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 209 LERIILNNNHIMALDQDAFANHIR----LRELNLEHNQIFEMDRYAF----RNLPLCERLFLNNNNISTlhEGL--FADM 278
Cdd:COG5238 182 VETVYLGCNQIGDEGIEELAEALTqnttVTTLWLKRNPIGDEGAEILaealKGNKSLTTLDLSNNQIGD--EGViaLAEA 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 279 ----ARLTFLNLAHNQIN----VLTSEIFRGLGNLNVLKLTRNNLNFIGDTVFAELW----SLSELELDDNRI-----ER 341
Cdd:COG5238 260 lknnTTVETLYLSGNQIGaegaIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLqgnkTLHTLNLAYNGIgaqgaIA 339
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 386770621 342 ISErALDGLNTLKTLNLRNNLLKkiDNG------LLRGTPALLSINVQANKL 387
Cdd:COG5238 340 LAK-ALQENTTLHSLDLSDNQIG--DEGaialakYLEGNTTLRELNLGKNNI 388
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
214-363 |
5.61e-04 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 42.85 E-value: 5.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 214 LNNNHI-----MALdQDAFANHIRLRELNLEHNQIFE--MDRYA--FRNLPLCERLFLNNNNIS-----TLHEGLfADMA 279
Cdd:COG5238 243 LSNNQIgdegvIAL-AEALKNNTTVETLYLSGNQIGAegAIALAkaLQGNTTLTSLDLSVNRIGdegaiALAEGL-QGNK 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386770621 280 RLTFLNLAHNQIN----VLTSEIFRGLGNLNVLKLTRNNLNFIGDTVFAELW----SLSELELDDNRI-ERISERALDGL 350
Cdd:COG5238 321 TLHTLNLAYNGIGaqgaIALAKALQENTTLHSLDLSDNQIGDEGAIALAKYLegntTLRELNLGKNNIgKQGAEALIDAL 400
|
170
....*....|....*
gi 386770621 351 --NTLKTLNLRNNLL 363
Cdd:COG5238 401 qtNRLHTLILDGNLI 415
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
352-416 |
4.58e-03 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 35.96 E-value: 4.58e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 386770621 352 TLKTLNLRNNLLKKIDNGLLRGTPALLSINVQANKLETLTFYTFQPImdnlvNSTSELLVSDNKF 416
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGL-----PSLRYLDLSGNRL 61
|
|
| |
