|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
994-1705 |
1.67e-22 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 105.91 E-value: 1.67e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 994 KQLNDTIQNLEKVNAKLSEdntvshtvhskLNESL--LKAQKELDLRAKIIEN-LEASERNLS-MKLCELKDLKNKLKSS 1069
Cdd:TIGR02168 179 RKLERTRENLDRLEDILNE-----------LERQLksLERQAEKAERYKELKAeLRELELALLvLRLEELREELEELQEE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1070 DEKIAQIKETYEEQIKALQAKCD--------MEAKKNEHLERNQNQS-----LTQLKEDALENCVLMSTKLEELQAKLQE 1136
Cdd:TIGR02168 248 LKEAEEELEELTAELQELEEKLEelrlevseLEEEIEELQKELYALAneisrLEQQKQILRERLANLERQLEELEAQLEE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1137 GQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLEC 1216
Cdd:TIGR02168 328 LESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1217 QKESGQQLVDNLKVELEKERKE------------LAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQV 1284
Cdd:TIGR02168 408 RLERLEDRRERLQQEIEELLKKleeaelkelqaeLEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1285 NSAFEAqtklsddLQRQKESAQQLVDNLKVELDKERK---------ELAQVNSAFEA--QTKLSDDLQ----REKESAQQ 1349
Cdd:TIGR02168 488 QARLDS-------LERLQENLEGFSEGVKALLKNQSGlsgilgvlsELISVDEGYEAaiEAALGGRLQavvvENLNAAKK 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1350 LVDNLKvELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNlkvELDKERKELAKVKSVIEAQTKLSDDLQRQKE 1429
Cdd:TIGR02168 561 AIAFLK-QNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAK---DLVKFDPKLRKALSYLLGGVLVVDDLDNALE 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1430 SAQQLEAQTKL----------------------SDDLQRQKESAQ--QLVDNLKVELDKERKELAQVKSVIEAQTKLSDD 1485
Cdd:TIGR02168 637 LAKKLRPGYRIvtldgdlvrpggvitggsaktnSSILERRREIEEleEKIEELEEKIAELEKALAELRKELEELEEELEQ 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1486 LQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTK 1565
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1566 LSDDLKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAyEQINKLENRCQEKDNVKSSQL 1645
Cdd:TIGR02168 797 ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI-ESLAAEIEELEELIEELESEL 875
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 386764407 1646 QVETFKVEclhhQLKSEMATHNSLVEDLNRKLAE---KVSKLDFVQSRLMTEIAEHNQVKDQL 1705
Cdd:TIGR02168 876 EALLNERA----SLEEALALLRSELEELSEELRElesKRSELRRELEELREKLAQLELRLEGL 934
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1125-1889 |
2.08e-22 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 105.91 E-value: 2.08e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1125 TKLEELQAKLQEGQqlVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAI 1204
Cdd:TIGR02168 213 ERYKELKAELRELE--LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1205 GAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQV 1284
Cdd:TIGR02168 291 YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1285 NSAFEaqtklsdDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLkvELDKERKE 1364
Cdd:TIGR02168 371 ESRLE-------ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1365 LAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQ-RQKESAQQLEAQTKLSDD 1443
Cdd:TIGR02168 442 LEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgFSEGVKALLKNQSGLSGI 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1444 LQRqkesaqqLVDNLKVEldkERKELAqvksvIEAqtKLSDDLQ----RQKESAQQLVDNLKMEldKERKELAQVKSAIG 1519
Cdd:TIGR02168 522 LGV-------LSELISVD---EGYEAA-----IEA--ALGGRLQavvvENLNAAKKAIAFLKQN--ELGRVTFLPLDSIK 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1520 AQTKLSDDLECQKEsvQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLK----LQKEDAQREVFLVKE--------R 1587
Cdd:TIGR02168 583 GTEIQGNDREILKN--IEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDnaleLAKKLRPGYRIVTLDgdlvrpggV 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1588 LVKEKREFE-------VKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKD------NVKSSQLQVETFKVEC 1654
Cdd:TIGR02168 661 ITGGSAKTNssilerrREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRkeleelSRQISALRKDLARLEA 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1655 LHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQI-----TDIPKVVELQHRLEAETAERE 1729
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLkeelkALREALDELRAELTLLNEEAA 820
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1730 EAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEfyrnRVEALERLLLASNQELEELNSIQ 1809
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES----ELEALLNERASLEEALALLRSEL 896
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1810 SNQAEGVRDLGDTYSAAEGR----QTESDQDKERYQKLALDCKILQAK----YRDAKDEIKRCEKKIKDQRLEMEGKLEK 1881
Cdd:TIGR02168 897 EELSEELRELESKRSELRREleelREKLAQLELRLEGLEVRIDNLQERlseeYSLTLEEAEALENKIEDDEEEARRRLKR 976
|
....*...
gi 386764407 1882 MKNKMRSL 1889
Cdd:TIGR02168 977 LENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1232-1958 |
4.10e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 101.67 E-value: 4.10e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1232 LEKERKELAQVKSVIEAQTKLSDDLQREKESAQQL-----------VDNLKVELDKERKELAQVNSAFEAQTKLSDDLQR 1300
Cdd:TIGR02168 181 LERTRENLDRLEDILNELERQLKSLERQAEKAERYkelkaelreleLALLVLRLEELREELEELQEELKEAEEELEELTA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1301 QKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSD 1380
Cdd:TIGR02168 261 ELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1381 DLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRqkESAQQLEAQTKLSDDLQRQKESAQQLVDNLKv 1460
Cdd:TIGR02168 341 ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS--KVAQLELQIASLNNEIERLEARLERLEDRRE- 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1461 ELDKERKELAQ--VKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIgaqtklsDDLECQKESVQQL 1538
Cdd:TIGR02168 418 RLQQEIEELLKklEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL-------DAAERELAQLQAR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1539 VDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEdaqrevflvkerLVKEKREFEVKLATL---------------- 1602
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSE------------LISVDEGYEAAIEAAlggrlqavvvenlnaa 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1603 EDIIETLE----MRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETFKVEclHHQLKSEMATHNSLVEDL---NR 1675
Cdd:TIGR02168 559 KKAIAFLKqnelGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPK--LRKALSYLLGGVLVVDDLdnaLE 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1676 KLAEKVSKLDFV---------------------QSRLMT--EIAEHNQVKDQLAQitdipKVVELQHRLEAETAEREEAQ 1732
Cdd:TIGR02168 637 LAKKLRPGYRIVtldgdlvrpggvitggsaktnSSILERrrEIEELEEKIEELEE-----KIAELEKALAELRKELEELE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1733 NKLAVVTGRLDEITRELDNARLE---HGAQILRMEETAREVGNKNAELCELIEFYRNRVEALERLLLASNQELEELNSIQ 1809
Cdd:TIGR02168 712 EELEQLRKELEELSRQISALRKDlarLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1810 SNQAEGVRDLGDTYSAAEGRQTESdqdKERYQKLALDCKILQAKYRDAKDEIKRCEKKIKDQRLEMEG------KLEKMK 1883
Cdd:TIGR02168 792 EQLKEELKALREALDELRAELTLL---NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESlaaeieELEELI 868
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 386764407 1884 NKMRSlYTAEVTRMKEKQERDAAKSASELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHAIISTNLRHLQ 1958
Cdd:TIGR02168 869 EELES-ELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
994-1633 |
5.35e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 100.78 E-value: 5.35e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 994 KQLNDTIQNLEKVNAKLSEdntvshtVHSKLNEslLKAQKELDLRAKIIENlEASERNLSMKLCELKDLKNKLKSSDEKI 1073
Cdd:COG1196 179 RKLEATEENLERLEDILGE-------LERQLEP--LERQAEKAERYRELKE-ELKELEAELLLLKLRELEAELEELEAEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1074 AQIKETYEEQIKALQAkcdMEAKKNEhlERNQNQSLTQLKEDALEncvlmstKLEELQAKLQEGQQLVDSQKLELDMNRK 1153
Cdd:COG1196 249 EELEAELEELEAELAE---LEAELEE--LRLELEELELELEEAQA-------EEYELLAELARLEQDIARLEERRRELEE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1154 ELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHvnsaigAQTKLSDDLECQKESGQQLVDNLKVELE 1233
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE------AEEALLEAEAELAEAEEELEELAEELLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1234 KERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLK 1313
Cdd:COG1196 391 ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1314 VELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRqkESAQQLV 1393
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE--AALAAAL 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1394 DNLKVELDKERKELAkvksvieaqtklsDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVK 1473
Cdd:COG1196 549 QNIVVEDDEVAAAAI-------------EYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARY 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1474 SVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKEL 1553
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1554 AKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENR 1633
Cdd:COG1196 696 EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1023-1629 |
1.22e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 96.54 E-value: 1.22e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1023 KLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLE 1102
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1103 RNQNQSLTQLKEDALEncvlmstkLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQL 1182
Cdd:COG1196 316 ERLEELEEELAELEEE--------LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1183 VDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQ-------QLVDNLKVELEKERKELAQVKSVIEAQTKLSDD 1255
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEealaeleEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1256 LQREKESAQQLVDNLKVELDKER------KELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELA----- 1324
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAarllllLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAalaaa 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1325 ---QVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVE-- 1399
Cdd:COG1196 548 lqnIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRtl 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1400 --LDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIE 1477
Cdd:COG1196 628 vaARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1478 AQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDnlkvELEKERKELAKVN 1557
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE----RLEREIEALGPVN 783
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386764407 1558 SA----FEAQTKLSDDLKLQKEDaqrevfLVKERlvkekrefevklATLEDIIETLEmrcTQMEEERATAYEQINK 1629
Cdd:COG1196 784 LLaieeYEELEERYDFLSEQRED------LEEAR------------ETLEEAIEEID---RETRERFLETFDAVNE 838
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
884-1636 |
2.67e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.51 E-value: 2.67e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 884 KEQSNAKEMAQrLDIAQQEIKDYHvEAIRFINTIRDRLQQDFNGVNTPQQLGTCMTEFLKMYDQ-MEVRYEESSSLVEKL 962
Cdd:TIGR02168 216 KELKAELRELE-LALLVLRLEELR-EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSeLEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 963 TESQAKLEMQVAELQVELENKDTNQhsgaliKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQKELDLRAKII 1042
Cdd:TIGR02168 294 ANEISRLEQQKQILRERLANLERQL------EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1043 ENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQakcdmeakknEHLERNQNQSLTQLKEDALENCVL 1122
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE----------DRRERLQQEIEELLKKLEEAELKE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1123 MSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYeaqtklsDDLQRQKESGQQLVDNLKVELEKERKELAHVNS 1202
Cdd:TIGR02168 438 LQAELEELEEELEELQEELERLEEALEELREELEEAEQAL-------DAAERELAQLQARLDSLERLQENLEGFSEGVKA 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1203 AIGAQTKLSDDLecqkesgQQLVDNLKVElekERKELAqvksvIEAqtKLSDDLQ----REKESAQQLVDNLKvELDKER 1278
Cdd:TIGR02168 511 LLKNQSGLSGIL-------GVLSELISVD---EGYEAA-----IEA--ALGGRLQavvvENLNAAKKAIAFLK-QNELGR 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1279 KELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNlkvELDKERKELAQVNSAFEAQTKLSDDLQrekeSAQQLVDNLK--- 1355
Cdd:TIGR02168 573 VTFLPLDSIKGTEIQGNDREILKNIEGFLGVAK---DLVKFDPKLRKALSYLLGGVLVVDDLD----NALELAKKLRpgy 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1356 --VELDKER--------KELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQ 1425
Cdd:TIGR02168 646 riVTLDGDLvrpggvitGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1426 RQKESAQ-QLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMEL 1504
Cdd:TIGR02168 726 RQISALRkDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1505 DKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLV 1584
Cdd:TIGR02168 806 DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL 885
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 386764407 1585 KERLVKEKREFEvklaTLEDIIETLEMRCTQMEEERATAYEQINKLENRCQE 1636
Cdd:TIGR02168 886 EEALALLRSELE----ELSEELRELESKRSELRRELEELREKLAQLELRLEG 933
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1231-1806 |
3.23e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 91.92 E-value: 3.23e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1231 ELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVD 1310
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1311 NLKVELDKERKELAQvnsafeaqtklsddLQREKESAQQLVDNLKVELDKERKELAqvksviEAQTKLSDDLQRQKESAQ 1390
Cdd:COG1196 313 ELEERLEELEEELAE--------------LEEELEELEEELEELEEELEEAEEELE------EAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1391 QLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELA 1470
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1471 QVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKER------KELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKV 1544
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAarllllLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1545 ELEKERKELA--------KVNSAFEAQTKLSDDLKLQKedAQREVFLVKERLvkEKREFEVKLATLEDIIETLEMRCTQM 1616
Cdd:COG1196 533 EAAYEAALEAalaaalqnIVVEDDEVAAAAIEYLKAAK--AGRATFLPLDKI--RARAALAAALARGAIGAAVDLVASDL 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1617 EEERATAYEQINKLENRCQEKDNVKSSQLQVETFKVEclHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLmtEIA 1696
Cdd:COG1196 609 READARYYVLGDTLLGRTLVAARLEAALRRAVTLAGR--LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL--EEL 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1697 EHNQVKDQLAQITDIPKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAE 1776
Cdd:COG1196 685 AERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764
|
570 580 590
....*....|....*....|....*....|
gi 386764407 1777 LCELIEFYRNRVEALERLLLASNQELEELN 1806
Cdd:COG1196 765 LERELERLEREIEALGPVNLLAIEEYEELE 794
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1234-1869 |
1.01e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 90.38 E-value: 1.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1234 KERKElaqvksviEAQTKLSD---DLQRekesaqqlVDNLKVELDKERKELA-QVNSAFEAQtKLSDDLQ-RQKESAQQL 1308
Cdd:COG1196 171 KERKE--------EAERKLEAteeNLER--------LEDILGELERQLEPLErQAEKAERYR-ELKEELKeLEAELLLLK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1309 VDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKES 1388
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1389 AQQLVDNLKVELDKERKELAKVKSVI-EAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERK 1467
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELeELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1468 ELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELE 1547
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1548 KERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREfevKLATLEDIIETLEMRCTQMEEERATAYEQI 1627
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR---GLAGAVAVLIGVEAAYEAALEAALAAALQN 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1628 NKLENRCQEKD---NVKSSQLQVETFKVECLHHQLKSEMATHNSLVEDLNRKL-AEKVSKLDFVQSRLMTEIAEHNQVKD 1703
Cdd:COG1196 551 IVVEDDEVAAAaieYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLvASDLREADARYYVLGDTLLGRTLVAA 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1704 QLAQITDIPkvVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEF 1783
Cdd:COG1196 631 RLEAALRRA--VTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1784 YRNRVEALERLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEGRQTESDQDKEryqklaldckilqakyrDAKDEIKR 1863
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE-----------------ELERELER 771
|
....*.
gi 386764407 1864 CEKKIK 1869
Cdd:COG1196 772 LEREIE 777
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
818-1560 |
2.11e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.88 E-value: 2.11e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 818 LKRELDDLRSKNEELAKQnINGIIKRNKFITSLEVNTEKVKQYITDLEEEAFKRKQKVVQLENTLSKEQSNAKEMAQRLD 897
Cdd:TIGR02168 279 LEEEIEELQKELYALANE-ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 898 IAQQEIKDYHVEAIRFINTIRDRLQQDFNGVN-TPQQLGTCMTEFLkmydQMEVRYEESSSLVEKLTESQAKLEMQVAEL 976
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLETLRSKVAqLELQIASLNNEIE----RLEARLERLEDRRERLQQEIEELLKKLEEA 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 977 QVelenKDTNQHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQkELDLRAKIIENLEASERNLSMKL 1056
Cdd:TIGR02168 434 EL----KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA-QLQARLDSLERLQENLEGFSEGV 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1057 CELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKC-----------DMEAKKN-EHLERNQNQSLTQLKEDalencVLMS 1124
Cdd:TIGR02168 509 KALLKNQSGLSGILGVLSELISVDEGYEAAIEAALggrlqavvvenLNAAKKAiAFLKQNELGRVTFLPLD-----SIKG 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1125 TKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQ------------------------------R 1174
Cdd:TIGR02168 584 TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDnalelakklrpgyrivtldgdlvrpggvitG 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1175 QKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSD 1254
Cdd:TIGR02168 664 GSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1255 DLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQT 1334
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR 823
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1335 KLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAkvksvi 1414
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE------ 897
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1415 EAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVEL-DKERKELAQVKSVIEAQTKLSDDLQRQKESA 1493
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 386764407 1494 QQLVDNL---KMELDKERKELAQVKSAIGAQtklSDDLECQKESVQQLVDNLKVELEKERKE-LAKVNSAF 1560
Cdd:TIGR02168 978 ENKIKELgpvNLAAIEEYEELKERYDFLTAQ---KEDLTEAKETLEEAIEEIDREARERFKDtFDQVNENF 1045
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
790-1622 |
2.74e-16 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 85.96 E-value: 2.74e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 790 NFLESMHIEKrfenIEMLIEGQLLSADDLKRELDDLRSKNEELAKQNIN---GIIKRNKFITSLEVNTEKVKQYITDLEE 866
Cdd:PTZ00121 1019 DFNQNFNIEK----IEELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKahvGQDEGLKPSYKDFDFDAKEDNRADEATE 1094
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 867 EAFKRKQKVVQLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEAIRFINTIRDRLQQDFNGVNTPQQLGTCMTEFLKMYD 946
Cdd:PTZ00121 1095 EAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAED 1174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 947 QMEVRYEESSSLVEKLTESQAKLEMQVAELQVELENkdtnqhsgalikqlndtIQNLEKVnaKLSEDNTVSHTVHsKLNE 1026
Cdd:PTZ00121 1175 AKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEE-----------------ERKAEEA--RKAEDAKKAEAVK-KAEE 1234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1027 SllKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQN 1106
Cdd:PTZ00121 1235 A--KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE 1312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1107 QSltqlkedalencvlmsTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESgqqlvDNL 1186
Cdd:PTZ00121 1313 EA----------------KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA-----AEK 1371
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1187 KVELEKERKELAHVNSAigaQTKLSDDLECQKESGQQLVDNLKvELEKERKELAQVKSVIEAQTKlSDDLQREKESAQQl 1266
Cdd:PTZ00121 1372 KKEEAKKKADAAKKKAE---EKKKADEAKKKAEEDKKKADELK-KAAAAKKKADEAKKKAEEKKK-ADEAKKKAEEAKK- 1445
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1267 VDNLKVELDKERKELAQVNSAFEAqtKLSDDLQRQKESAQQlVDNLKVELDKERKELAQVNSAFEAQTKLsdDLQREKES 1346
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKKAEEA--KKADEAKKKAEEAKK-ADEAKKKAEEAKKKADEAKKAAEAKKKA--DEAKKAEE 1520
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1347 AQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKE----RKELAKV--KSVIEAQTKL 1420
Cdd:PTZ00121 1521 AKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNmalrKAEEAKKaeEARIEEVMKL 1600
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1421 SDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNL 1500
Cdd:PTZ00121 1601 YEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1501 KMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQlVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQRE 1580
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK-AEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKI 1759
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 386764407 1581 VFLVKERLVKEKREFEVKLATLEDIIETlEMRCTQMEEERAT 1622
Cdd:PTZ00121 1760 AHLKKEEEKKAEEIRKEKEAVIEEELDE-EDEKRRMEVDKKI 1800
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1046-1694 |
2.70e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 82.50 E-value: 2.70e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1046 EASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQnqsltqlkedalencvlmST 1125
Cdd:PTZ00121 1174 DAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAE------------------EA 1235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1126 KLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELahvnSAIG 1205
Cdd:PTZ00121 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEA----KKKA 1311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1206 AQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVN 1285
Cdd:PTZ00121 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1286 SAFEAQTKLSDDLQ-----RQKESAQQLVDNLKVELDKERKELAQVNSAFEAqtKLSDDLQREKESAQQlVDNLKVELDK 1360
Cdd:PTZ00121 1392 KADEAKKKAEEDKKkadelKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA--KKADEAKKKAEEAKK-AEEAKKKAEE 1468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1361 ERKELAQVKSVIEAqtKLSDDLQRQKESAQQLVDNLK--VELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQT 1438
Cdd:PTZ00121 1469 AKKADEAKKKAEEA--KKADEAKKKAEEAKKKADEAKkaAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK 1546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1439 KlSDDLQ-----RQKESAQQLVDNLKVELDK-------------ERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNL 1500
Cdd:PTZ00121 1547 K-ADELKkaeelKKAEEKKKAEEAKKAEEDKnmalrkaeeakkaEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL 1625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1501 KMElDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQre 1580
Cdd:PTZ00121 1626 KKA-EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK-- 1702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1581 vflvKERLVKEKREFEVKLAtlEDIIETLEMRCTQMEEERATAYEQINKLEN-RCQEKDNVKSSQLQVETFKVECLHHQL 1659
Cdd:PTZ00121 1703 ----KAEELKKKEAEEKKKA--EELKKAEEENKIKAEEAKKEAEEDKKKAEEaKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
650 660 670
....*....|....*....|....*....|....*.
gi 386764407 1660 KSEMATHNSLVEDLNRKL-AEKVSKLDFVQSRLMTE 1694
Cdd:PTZ00121 1777 KEAVIEEELDEEDEKRRMeVDKKIKDIFDNFANIIE 1812
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1113-1870 |
1.70e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 79.73 E-value: 1.70e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1113 KEDALENCVLMSTKLEELQAKLQE-GQQLvdsQKLELDMNRKE----LALVKSAYEAQTKLSD--DLQRQKESGQQLVDN 1185
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEkRQQL---ERLRREREKAEryqaLLKEKREYEGYELLKEkeALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1186 LKVELEKERKELAHVNSAIGAQTKLSDDLECQ-KESGQQLVDNLKVELEKERKELAQVKSVIEAqtklsddLQREKESAQ 1264
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKiKDLGEEEQLRVKEKIGELEAEIASLERSIAE-------KERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1265 QLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREK 1344
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1345 ESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDL 1424
Cdd:TIGR02169 402 NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1425 QRQKESAQ----QLEAQTKLSDDLQRQKESAQQLV---------------------------------DNLKVELD---- 1463
Cdd:TIGR02169 482 EKELSKLQrelaEAEAQARASEERVRGGRAVEEVLkasiqgvhgtvaqlgsvgeryataievaagnrlNNVVVEDDavak 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1464 ------KERK-------ELAQVKSVIEAQTKLSDD----------------------------LQRQKESAQQLVDNLKM 1502
Cdd:TIGR02169 562 eaiellKRRKagratflPLNKMRDERRDLSILSEDgvigfavdlvefdpkyepafkyvfgdtlVVEDIEAARRLMGKYRM 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1503 -ELDKERKELAQV--------KSAIGAQTKLSDDLecqkESVQQLVDNLKVELEKERKELAKV-NSAFEAQTKLSddlkl 1572
Cdd:TIGR02169 642 vTLEGELFEKSGAmtggsrapRGGILFSRSEPAEL----QRLRERLEGLKRELSSLQSELRRIeNRLDELSQELS----- 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1573 qkeDAQREVflvkERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSS-QLQVETFK 1651
Cdd:TIGR02169 713 ---DASRKI----GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKlEEALNDLE 785
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1652 VECLHHQ----------LKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDipKVVELQHRL 1721
Cdd:TIGR02169 786 ARLSHSRipeiqaelskLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK--EIENLNGKK 863
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1722 EAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKN---AELCELIEFYRNRVEALERLLLAS 1798
Cdd:TIGR02169 864 EELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRkrlSELKAKLEALEEELSEIEDPKGED 943
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 386764407 1799 NQELEELNSIQSNQA------EGVRDLGDTYSAAEgrqTESDQDKERYQKLALDCKILQAKYRDAKDEIKRCEKKIKD 1870
Cdd:TIGR02169 944 EEIPEEELSLEDVQAelqrveEEIRALEPVNMLAI---QEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1338-1690 |
3.13e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.49 E-value: 3.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1338 DDLQREKESAQQlvdnlkvELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQ 1417
Cdd:TIGR02169 166 AEFDRKKEKALE-------ELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1418 -TKLSDDLQRQKESAQQLEAQTklsDDLQRQKESAQQLVDNLKVELDKE--------RKELAQVKSVIEAQTKLSDDLQR 1488
Cdd:TIGR02169 239 kEAIERQLASLEEELEKLTEEI---SELEKRLEEIEQLLEELNKKIKDLgeeeqlrvKEKIGELEAEIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1489 QKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKlsddlecQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSD 1568
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK-------RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1569 DLKLQKEDAQREVFLVK---ERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENrcqekdnvKSSQL 1645
Cdd:TIGR02169 389 DYREKLEKLKREINELKrelDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW--------KLEQL 460
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 386764407 1646 QVETFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSR 1690
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
932-1573 |
4.78e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 75.15 E-value: 4.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 932 QQLGTCMTEFLKMYDQmevryeESSSLVEKLTESQAKLEMQVAELQVELEnkdtnqhsgALIKQLNDTIQNLekvnakLS 1011
Cdd:pfam15921 216 RSLGSAISKILRELDT------EISYLKGRIFPVEDQLEALKSESQNKIE---------LLLQQHQDRIEQL------IS 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1012 EdntvsHTVH-SKLNESLLKAQKELDLRAKIIENLEASERNL-SMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQa 1089
Cdd:pfam15921 275 E-----HEVEiTGLTEKASSARSQANSIQSQLEIIQEQARNQnSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELE- 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1090 kcdmeakknehlernqnqsltqlKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNR--KELALVKsayEAQTK 1167
Cdd:pfam15921 349 -----------------------KQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKreKELSLEK---EQNKR 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1168 LSDdlqrqKESGQQL-VDNLKVELEKERKELAHVNSAIGAQTKlsddlECQKESGQQL--VDNLKVELEKERKELAQVKS 1244
Cdd:pfam15921 403 LWD-----RDTGNSItIDHLRRELDDRNMEVQRLEALLKAMKS-----ECQGQMERQMaaIQGKNESLEKVSSLTAQLES 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1245 VIEAQTKLSDDLQREK---ESAQQLVDNLKVELDKERKELAQVNSAFeaqTKLSD--DLQRQK-----------ESAQQL 1308
Cdd:pfam15921 473 TKEMLRKVVEELTAKKmtlESSERTVSDLTASLQEKERAIEATNAEI---TKLRSrvDLKLQElqhlknegdhlRNVQTE 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1309 VDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQtklsDDLQRQKES 1388
Cdd:pfam15921 550 CEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKK----DAKIRELEA 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1389 AQQLVDNLKVELDKERKE-LAKVKSVIEAQTKLSDDLQRQKESAQQL-EAQTKLSDDLQRQKESAQQLVDNLKVELDKER 1466
Cdd:pfam15921 626 RVSDLELEKVKLVNAGSErLRAVKDIKQERDQLLNEVKTSRNELNSLsEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQ 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1467 KELAQVKSVIEAQ-------TKLSDDLQRQKESAQQLVDNLKME-----------------LDKERKELAQVKSAIGAQ- 1521
Cdd:pfam15921 706 SELEQTRNTLKSMegsdghaMKVAMGMQKQITAKRGQIDALQSKiqfleeamtnankekhfLKEEKNKLSQELSTVATEk 785
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 386764407 1522 TKLSDDLEC---QKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQ 1573
Cdd:pfam15921 786 NKMAGELEVlrsQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQ 840
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1026-1698 |
6.87e-13 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 74.49 E-value: 6.87e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1026 ESLLKAQKELDLRAKIIENLE-ASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCdmeAKKNEHLERN 1104
Cdd:pfam12128 251 NTLESAELRLSHLHFGYKSDEtLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAV---AKDRSELEAL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1105 QNQSLTQLKEDA------LENCVLMSTKLEEL--------------QAKLQEGQQLVDSQ-KLELDMNRKELALVKSAYE 1163
Cdd:pfam12128 328 EDQHGAFLDADIetaaadQEQLPSWQSELENLeerlkaltgkhqdvTAKYNRRRSKIKEQnNRDIAGIKDKLAKIREARD 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1164 AQ-TKLSDDLQRQKESGQQLVDNLKVELEKERKELAhvnSAIG------AQTKLSDDLECQKESGQQLVDNLKVELEKER 1236
Cdd:pfam12128 408 RQlAVAEDDLQALESELREQLEAGKLEFNEEEYRLK---SRLGelklrlNQATATPELLLQLENFDERIERAREEQEAAN 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1237 KELaqvksvieaqtklsDDLQREKESAQQLVDNLKVELDKERKELAQVNSAF-EAQTKLSddlqrqkESAQQLVDNLKVE 1315
Cdd:pfam12128 485 AEV--------------ERLQSELRQARKRRDQASEALRQASRRLEERQSALdELELQLF-------PQAGTLLHFLRKE 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1316 LDKERKELAQV-NSAFEAQTKLSDDLQREKESAQQLVDNLKVELDK-ERKELAQVKSVIEAQ-TKLSDDLQRQKESAQQL 1392
Cdd:pfam12128 544 APDWEQSIGKViSPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRiDVPEWAASEEELRERlDKAEEALQSAREKQAAA 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1393 VDNL---KVELDKERKELAKVKSVIEAQtklSDDLQRQKESAQQLEaqtklsDDLQRQKESAQQLVDNLKVELDKERKEL 1469
Cdd:pfam12128 624 EEQLvqaNGELEKASREETFARTALKNA---RLDLRRLFDEKQSEK------DKKNKALAERKDSANERLNSLEAQLKQL 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1470 A-QVKSVIEAQTKLSDDLQRQKESA-QQLVDNLKMELDKERKELAQVKSAIGAQTKlsddlECQKESVQQL----VDNLK 1543
Cdd:pfam12128 695 DkKHQAWLEEQKEQKREARTEKQAYwQVVEGALDAQLALLKAAIAARRSGAKAELK-----ALETWYKRDLaslgVDPDV 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1544 V-ELEKERKEL-AKVNSAFEAQTKLsddlkLQKEDAQREVFLV-KERLVKEKREFEVKLATLED----IIETLEMRCTQM 1616
Cdd:pfam12128 770 IaKLKREIRTLeRKIERIAVRRQEV-----LRYFDWYQETWLQrRPRLATQLSNIERAISELQQqlarLIADTKLRRAKL 844
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1617 EEERATAYEQINKLEnrcQEKDNVKSSQLQVETFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIA 1696
Cdd:pfam12128 845 EMERKASEKQQVRLS---ENLRGLRCEMSKLATLKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIA 921
|
..
gi 386764407 1697 EH 1698
Cdd:pfam12128 922 DH 923
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
993-1610 |
1.12e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 73.52 E-value: 1.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 993 IKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQKELDLRAKIIENLEAsernlsmklcELKDLKNKLKSSDEK 1072
Cdd:TIGR04523 70 INNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEV----------ELNKLEKQKKENKKN 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1073 IAQIKETY---EEQIKALQAKCDMEAKKNEHLERNQNQSLTQL--KEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLE 1147
Cdd:TIGR04523 140 IDKFLTEIkkkEKELEKLNNKYNDLKKQKEELENELNLLEKEKlnIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQ 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1148 L-DMNRKELALVKSAYEAQTKLSDdLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQ--------- 1217
Cdd:TIGR04523 220 IsELKKQNNQLKDNIEKKQQEINE-KTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQlnqlkseis 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1218 ---KESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKL 1294
Cdd:TIGR04523 299 dlnNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1295 SDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEA 1374
Cdd:TIGR04523 379 NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKN 458
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1375 QTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSvieaqtklsdDLQRQKESAQQLEAQTKlsdDLQRQKESAQQL 1454
Cdd:TIGR04523 459 LDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEK----------ELKKLNEEKKELEEKVK---DLTKKISSLKEK 525
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1455 VDNLKVELDKERKELAQVKSVIEA--QTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQK 1532
Cdd:TIGR04523 526 IEKLESEKKEKESKISDLEDELNKddFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEI 605
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 386764407 1533 ESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLE 1610
Cdd:TIGR04523 606 EEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMK 683
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1231-1967 |
1.86e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.18 E-value: 1.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1231 ELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKlsdDLQRQKESAQQLVD 1310
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKE---AIERQLASLEEELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1311 NLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQlvdnlkveldkerKELAQVKSVIEAQTKLSDDLQRQKESAQ 1390
Cdd:TIGR02169 255 KLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVK-------------EKIGELEAEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1391 QLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEaqtklsDDLQRQKESAQQLVDNLKVELDKERKELA 1470
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL------EDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1471 QVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKER 1550
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1551 KELAKVNSAF-EAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVkLATLEDIIETLEMRCTQME------------ 1617
Cdd:TIGR02169 476 EEYDRVEKELsKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGV-HGTVAQLGSVGERYATAIEvaagnrlnnvvv 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1618 EERATAYEQINKLEN--------------RCQEKDNVKSSQLQVETFKVECLHHQLKSEMATH-----NSLVEDLN--RK 1676
Cdd:TIGR02169 555 EDDAVAKEAIELLKRrkagratflplnkmRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKyvfgdTLVVEDIEaaRR 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1677 LAEKVS--KLD---FVQSRLMTEIAEHNQvKDQLAQITDIPKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDN 1751
Cdd:TIGR02169 635 LMGKYRmvTLEgelFEKSGAMTGGSRAPR-GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1752 ARLEHGAQILRMEETAREVGNKNAELCELiefyRNRVEALERLLLASNQELEELNS-IQSNQA----------------- 1813
Cdd:TIGR02169 714 ASRKIGEIEKEIEQLEQEEEKLKERLEEL----EEDLSSLEQEIENVKSELKELEArIEELEEdlhkleealndlearls 789
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1814 -EGVRDLGDTYSAAEG---------RQTESDQDKERYQKLALDCKI--LQAKYRDAKDEIKRCEKKIKDQRLEMEGKLEK 1881
Cdd:TIGR02169 790 hSRIPEIQAELSKLEEevsriearlREIEQKLNRLTLEKEYLEKEIqeLQEQRIDLKEQIKSIEKEIENLNGKKEELEEE 869
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1882 MKNKMRSLYTAEVTRMKEKQERDAAKsaSELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHAIISTNLRhlQMQP 1961
Cdd:TIGR02169 870 LEELEAALRDLESRLGDLKKERDELE--AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKG--EDEE 945
|
....*.
gi 386764407 1962 ISETKP 1967
Cdd:TIGR02169 946 IPEEEL 951
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1382-1986 |
2.76e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.28 E-value: 2.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1382 LQRQKESAqqlvdnlkveldKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQL---VDNL 1458
Cdd:COG1196 205 LERQAEKA------------ERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELeaeLEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1459 KVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQL 1538
Cdd:COG1196 273 RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1539 VDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQRevflvkerlvkEKREFEVKLATLEDIIETLEMRCTQMEE 1618
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR-----------AAAELAAQLEELEEAEEALLERLERLEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1619 ERATAYEQINKLEnrcQEKDNVKSSQLQVETfkvecLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEH 1698
Cdd:COG1196 422 ELEELEEALAELE---EEEEEEEEALEEAAE-----EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1699 NQVKDQLAQITDIPKVVELQHRLEAETAEREEaqnkLAVVTGRLDEITRELDNARLEHGAQILRMEETAREvgnknaelc 1778
Cdd:COG1196 494 LLLLEAEADYEGFLEGVKAALLLAGLRGLAGA----VAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAA--------- 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1779 ELIEFYRNRveALERLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEGRQTESDQDKERYQKLALDckILQAKYRDAK 1858
Cdd:COG1196 561 AAIEYLKAA--KAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRT--LVAARLEAAL 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1859 DEIKRCEKKIKDQRLEMEGKLE--KMKNKMRSLYTAEVTRMKEKQERDAAKSASELEALTAQNAKYEEHTRKLSNQIVRL 1936
Cdd:COG1196 637 RRAVTLAGRLREVTLEGEGGSAggSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 386764407 1937 NEKILEQQKQHAIISTNLRHLQMQPISETKPSSTTLTVSSSSSAPNDDWQ 1986
Cdd:COG1196 717 LEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELE 766
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
949-1636 |
2.01e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.71 E-value: 2.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 949 EVRYEESSSLVEKLTESQAKLEMQVAELQVELENKDtnqhsgALIKQLNDTIQNLEKVNAKLSEDntvshtVHSKLNESL 1028
Cdd:TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLT------EEISELEKRLEEIEQLLEELNKK------IKDLGEEEQ 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1029 LKAQKELdlrAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAkcdmEAKKNEHLErnqnqs 1108
Cdd:TIGR02169 290 LRVKEKI---GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEE----ERKRRDKLT------ 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1109 lTQLKEDAlencvlmsTKLEELQAKLQEGQQLVDSQKLELDMNRKELalvksayeaqtklsDDLQRQKESGQQLVDNLKV 1188
Cdd:TIGR02169 357 -EEYAELK--------EELEDLRAELEEVDKEFAETRDELKDYREKL--------------EKLKREINELKRELDRLQE 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1189 ELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVD 1268
Cdd:TIGR02169 414 ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1269 NLKVELDKERKElaqVNSAFEAQTKLSDDLQRQKESAQQLV------------------DNLKVELDKERKE----LAQV 1326
Cdd:TIGR02169 494 EAEAQARASEER---VRGGRAVEEVLKASIQGVHGTVAQLGsvgeryataievaagnrlNNVVVEDDAVAKEaielLKRR 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1327 N---SAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLqrqkESAQQLVDNLK-VELDK 1402
Cdd:TIGR02169 571 KagrATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDI----EAARRLMGKYRmVTLEG 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1403 ERKELA--------KVKSVIEAQTKLSDDLQRQKESAQQLEaqtKLSDDLQRQKESAQQLVDNLKVELDKE-------RK 1467
Cdd:TIGR02169 647 ELFEKSgamtggsrAPRGGILFSRSEPAELQRLRERLEGLK---RELSSLQSELRRIENRLDELSQELSDAsrkigeiEK 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1468 ELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQ-KESVQQLVDNLKVEL 1546
Cdd:TIGR02169 724 EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARlSHSRIPEIQAELSKL 803
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1547 EKERKELAKVNSAFEAQTK------------------LSDDLKLQKEDAQREVflvkERLVKEKREFEVKLATLEDIIET 1608
Cdd:TIGR02169 804 EEEVSRIEARLREIEQKLNrltlekeylekeiqelqeQRIDLKEQIKSIEKEI----ENLNGKKEELEEELEELEAALRD 879
|
730 740
....*....|....*....|....*...
gi 386764407 1609 LEMRCTQMEEERATAYEQINKLENRCQE 1636
Cdd:TIGR02169 880 LESRLGDLKKERDELEAQLRELERKIEE 907
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1099-1630 |
2.11e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 69.56 E-value: 2.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1099 EHLE--RNQNQSLTQLKEDALENCVLMST-KLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQ 1175
Cdd:COG4913 252 ELLEpiRELAERYAAARERLAELEYLRAAlRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQ 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1176 K-ESGQQLVDNLKVELEKERKELAHVN----------SAIGAQTKLS-DDLECQKESGQQLVDNLKVELEKERKELAQVK 1243
Cdd:COG4913 332 IrGNGGDRLEQLEREIERLERELEERErrrarleallAALGLPLPASaEEFAALRAEAAALLEALEEELEALEEALAEAE 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1244 SVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELA-----------------QVNSAFEA---------------- 1290
Cdd:COG4913 412 AALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAealgldeaelpfvgeliEVRPEEERwrgaiervlggfaltl 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1291 ---------------QTKL------------SDDLQRQKESAQQLVDNLKVE-------LDKE---RKELAQVNSAFE-- 1331
Cdd:COG4913 492 lvppehyaaalrwvnRLHLrgrlvyervrtgLPDPERPRLDPDSLAGKLDFKphpfrawLEAElgrRFDYVCVDSPEElr 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1332 ---------AQTKLS------DDLQREKE------SAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQ 1390
Cdd:COG4913 572 rhpraitraGQVKGNgtrhekDDRRRIRSryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQ 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1391 QLVDNLKVELDkerkelakVKSVIEAQTKLSDDLQRQKESAQQLEAqtklsddLQRQKESAQQLVDNLKVELDKERKELA 1470
Cdd:COG4913 652 RLAEYSWDEID--------VASAEREIAELEAELERLDASSDDLAA-------LEEQLEELEAELEELEEELDELKGEIG 716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1471 QVKSVIEAQTKLSDDLQRQKESAQQLVD-NLKMELDKERKELAQvksaIGAQTKLSDDLECQKESVQQLVDNLKVELEKE 1549
Cdd:COG4913 717 RLEKELEQAEEELDELQDRLEAAEDLARlELRALLEERFAAALG----DAVERELRENLEERIDALRARLNRAEEELERA 792
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1550 RKElakVNSAFEAQTK-LSDDLKLQKEDAQREVFLVKERLVKEKREFevKLATLEDIIETLEMRCTQMEEERATAYEQIN 1628
Cdd:COG4913 793 MRA---FNREWPAETAdLDADLESLPEYLALLDRLEEDGLPEYEERF--KELLNENSIEFVADLLSKLRRAIREIKERID 867
|
..
gi 386764407 1629 KL 1630
Cdd:COG4913 868 PL 869
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1030-1695 |
3.21e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 68.99 E-value: 3.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1030 KAQKELDLRAKIIE--NLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKC---DMEAKKNEHLERN 1104
Cdd:pfam15921 56 KYEVELDSPRKIIAypGKEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLqemQMERDAMADIRRR 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1105 QNQSLTQLKeDALENCVlmstklEELQAKLQEGQQLVDSQKLELDMNRK-ELALVKSAYEAQTKLSDdlqRQKESGQQLv 1183
Cdd:pfam15921 136 ESQSQEDLR-NQLQNTV------HELEAAKCLKEDMLEDSNTQIEQLRKmMLSHEGVLQEIRSILVD---FEEASGKKI- 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1184 dnlkveLEKERKELAHVNSAIGAQTKLSDDLECQkesgqqlVDNLKVELEKERKELAQVKSviEAQTKLSDDLQREKESA 1263
Cdd:pfam15921 205 ------YEHDSMSTMHFRSLGSAISKILRELDTE-------ISYLKGRIFPVEDQLEALKS--ESQNKIELLLQQHQDRI 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1264 QQLVDNLKVEL----DKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTklsDD 1339
Cdd:pfam15921 270 EQLISEHEVEItgltEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKI---EE 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1340 LQREKESAQQLVDNLKVELDKERKELA----QVKSVIEAQTKLSDDLQRQKESAQQL----------VDNLKVELDKERK 1405
Cdd:pfam15921 347 LEKQLVLANSELTEARTERDQFSQESGnlddQLQKLLADLHKREKELSLEKEQNKRLwdrdtgnsitIDHLRRELDDRNM 426
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1406 ELAKVKSVIEA-QTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSD 1484
Cdd:pfam15921 427 EVQRLEALLKAmKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQ 506
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1485 DLQRQKESAQQLVDNLKMELDKERKELAQVKSAigaqtklsddlECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQT 1564
Cdd:pfam15921 507 EKERAIEATNAEITKLRSRVDLKLQELQHLKNE-----------GDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMT 575
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1565 KLSDDL-----KLQKEDAQREVFLVKERLvkEKREFEVKLATLEDIIETLEMRCTQMEEERAtayEQINKLENRCQEKDN 1639
Cdd:pfam15921 576 QLVGQHgrtagAMQVEKAQLEKEINDRRL--ELQEFKILKDKKDAKIRELEARVSDLELEKV---KLVNAGSERLRAVKD 650
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 386764407 1640 VKSSQLQvetfkvecLHHQLKSEMATHNSLVED---LNRKLAEKVSKLDFVQSRLMTEI 1695
Cdd:pfam15921 651 IKQERDQ--------LLNEVKTSRNELNSLSEDyevLKRNFRNKSEEMETTTNKLKMQL 701
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1169-1929 |
4.14e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.01 E-value: 4.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1169 SDDLQRQKESGQQLVDNLKvELEKERKelAHVNSAIGAQTKLSDDLECQKEsgqqlvDNLKVELEKERKELAQvkSVIEA 1248
Cdd:PTZ00121 1038 NDDVLKEKDIIDEDIDGNH-EGKAEAK--AHVGQDEGLKPSYKDFDFDAKE------DNRADEATEEAFGKAE--EAKKT 1106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1249 QTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNS 1328
Cdd:PTZ00121 1107 ETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEE 1186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1329 AFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELA 1408
Cdd:PTZ00121 1187 VRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFA 1266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1409 KVKSVIEAQTKLSDDLQRQKESAQQLEaQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSviEAQTKLSDDLQR 1488
Cdd:PTZ00121 1267 RRQAAIKAEEARKADELKKAEEKKKAD-EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKA--DAAKKKAEEAKK 1343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1489 QKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQlVDNLKVELEKERKELAKVNSAFEAQTKlSD 1568
Cdd:PTZ00121 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK-ADEAKKKAEEDKKKADELKKAAAAKKK-AD 1421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1569 DLKLQKEDAQREVFLVKERLVKEKREFEVKLATlediietlEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVE 1648
Cdd:PTZ00121 1422 EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE--------EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1649 TFKVECLHHQLKSEMATHnslVEDLNRklAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDIPKVVELQHRLEAETAER 1728
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKK---ADEAKK--AEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEE 1568
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1729 EEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAR-------EVGNKNAELCELIEFYRNRVEALERLLLASNQE 1801
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKaeeakkaEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1802 LEEL------NSIQSNQaEGVRDLGDTYSAAEGRQTESDQDK--------ERYQKLALDCKILQAKYRDAKDEIKRCEKK 1867
Cdd:PTZ00121 1649 AEELkkaeeeNKIKAAE-EAKKAEEDKKKAEEAKKAEEDEKKaaealkkeAEEAKKAEELKKKEAEEKKKAEELKKAEEE 1727
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 386764407 1868 IKDQRLEMEGKLEKMKNKMRSLYTAE-----VTRMKEKQERDAAKSASELEALTAQNAKYEEHTRKL 1929
Cdd:PTZ00121 1728 NKIKAEEAKKEAEEDKKKAEEAKKDEeekkkIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM 1794
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1281-1512 |
4.76e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 67.10 E-value: 4.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1281 LAQVNSAFEAQTKLsDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDK 1360
Cdd:COG4942 16 AAQADAAAEAEAEL-EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1361 ERKELAQVKSVIEAQTKLSDDLQRQkeSAQQLVDNLKVELDKERKeLAKVKSVIEAQTKLSDDLQRQKESAQQLEAQ-TK 1439
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQ--PPLALLLSPEDFLDAVRR-LQYLKYLAPARREQAEELRADLAELAALRAElEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 386764407 1440 LSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELA 1512
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
850-1511 |
5.42e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.04 E-value: 5.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 850 LEVNTEKVKQYITDLEEEAFKRKQKVVQLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEAIRFINTIRDRLQQDfngvn 929
Cdd:COG1196 237 LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR----- 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 930 tpqqlgtcmteflkmyDQMEVRYEESSSLVEKLTESQAKLEMQVAELQVELEnkdtnqhsgALIKQLNDTIQNLEKVNAK 1009
Cdd:COG1196 312 ----------------RELEERLEELEEELAELEEELEELEEELEELEEELE---------EAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1010 LSEdntvshtvhskLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQA 1089
Cdd:COG1196 367 LLE-----------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1090 KCDMEAKKNEHLERNQNQSLTQLKEDALEncvlmstkLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLS 1169
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLEL--------LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1170 DDLQRQKESGQQ--LVDNLKVELEKERKELAHVNSAIGAQtkLSDDLECQKESGQQLVDNLKVELEKERKELaqvksvie 1247
Cdd:COG1196 508 EGVKAALLLAGLrgLAGAVAVLIGVEAAYEAALEAALAAA--LQNIVVEDDEVAAAAIEYLKAAKAGRATFL-------- 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1248 AQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVN 1327
Cdd:COG1196 578 PLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGS 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1328 SAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKEL 1407
Cdd:COG1196 658 AGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1408 akvksvieaqtklsddLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDK----------ERKELAQVKSVIE 1477
Cdd:COG1196 738 ----------------LEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAlgpvnllaieEYEELEERYDFLS 801
|
650 660 670
....*....|....*....|....*....|....
gi 386764407 1478 AQtklSDDLQRQKESAQQLVDnlkmELDKERKEL 1511
Cdd:COG1196 802 EQ---REDLEEARETLEEAIE----EIDRETRER 828
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
951-1620 |
6.02e-11 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 68.07 E-value: 6.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 951 RYEESSSLVEKLTESqAKLEMQVAELQVELENKDTNQhsgaLIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNEsLLK 1030
Cdd:TIGR00618 177 QYTQLALMEFAKKKS-LHGKAELLTLRSQLLTLCTPC----MPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQ-KRE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1031 AQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSS---------DEKIAQIKETYEEQIKALQAKCDMEAKKNEHL 1101
Cdd:TIGR00618 251 AQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRArkaaplaahIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKR 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1102 ERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQ 1181
Cdd:TIGR00618 331 AAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQA 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1182 LVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELaqvKSVIEAQTKLSDDLQREKE 1261
Cdd:TIGR00618 411 TIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSL---KEREQQLQTKEQIHLQETR 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1262 SaQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQ 1341
Cdd:TIGR00618 488 K-KAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQ 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1342 REKESAQ---QLVDNLKVELDKERKELAQVKSVIEAQTKLSDDL----QRQKESAQQLVDNLKVELDKER--KELAKVKS 1412
Cdd:TIGR00618 567 EIQQSFSiltQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLaceqHALLRKLQPEQDLQDVRLHLQQcsQELALKLT 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1413 VIEaQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQlvdNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKES 1492
Cdd:TIGR00618 647 ALH-ALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQ---SEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1493 AQQLVDNLKMELDKERKELAQVKSAIGAQ--TKLSDDLECQKESVQQLVDNLKV--ELEKERKELAKVNSAFEAQTKLSD 1568
Cdd:TIGR00618 723 IENASSSLGSDLAAREDALNQSLKELMHQarTVLKARTEAHFNNNEEVTAALQTgaELSHLAAEIQFFNRLREEDTHLLK 802
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 386764407 1569 DLKLQKE----DAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEER 1620
Cdd:TIGR00618 803 TLEAEIGqeipSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECS 858
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
973-1697 |
8.68e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 67.69 E-value: 8.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 973 VAELQVELENKDTNQHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHtvhsKLNESLLKAQKELDLRAKIIENLEASERNL 1052
Cdd:pfam02463 229 LDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKEN----KEEEKEKKLQEEELKLLAKEEEELKSELLK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1053 SMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQNQSLTQLKEDALEncvlmstKLEELQA 1132
Cdd:pfam02463 305 LERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQ-------LEEELLA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1133 KLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSddlqRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSD 1212
Cdd:pfam02463 378 KKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELA----RQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEEL 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1213 DLECQKESGQQLVDNLKvelEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQT 1292
Cdd:pfam02463 454 EKQELKLLKDELELKKS---EDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGR 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1293 KLSDDLQRQKESAQ----QLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAqQLVDNLKVELDKERKELAQV 1368
Cdd:pfam02463 531 LGDLGVAVENYKVAistaVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKL-PLKSIAVLEIDPILNLAQLD 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1369 KSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQK 1448
Cdd:pfam02463 610 KATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESEL 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1449 ESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVK-SAIGAQTKLSDD 1527
Cdd:pfam02463 690 AKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRlKKEEKEEEKSEL 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1528 LECQKESVQQLVDN--LKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDI 1605
Cdd:pfam02463 770 SLKEKELAEEREKTekLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLE 849
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1606 IETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETFKVECLhhQLKSEMATHNSLVEDLNRKLAEKVSKLD 1685
Cdd:pfam02463 850 KLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEK--KELEEESQKLNLLEEKENEIEERIKEEA 927
|
730
....*....|..
gi 386764407 1686 FVQSRLMTEIAE 1697
Cdd:pfam02463 928 EILLKYEEEPEE 939
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1170-1630 |
2.23e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 66.09 E-value: 2.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1170 DDLQRQKESGQQLVDnLKVELEKERKELAHVNSAIGAQTKLSDDLEcqKESGQQLVDNLKVELEKERKELAQVKSVIEAQ 1249
Cdd:COG4913 245 EDAREQIELLEPIRE-LAERYAAARERLAELEYLRAALRLWFAQRR--LELLEAELEELRAELARLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1250 TKLSDDLQREKESAQ-QLVDNLKVELDKERKELAQVNSAFEAQTKL-----------SDDLQRQKESAQQLVDNLKVELD 1317
Cdd:COG4913 322 REELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALlaalglplpasAEEFAALRAEAAALLEALEEELE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1318 KERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDL--------------- 1382
Cdd:COG4913 402 ALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDEAELPFVGELievrpeeerwrgaie 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1383 -------------QRQKESAQQLVDNLK---------VELDKERKELAKVK--SVIE--------AQTKLSDDLQRQK-- 1428
Cdd:COG4913 482 rvlggfaltllvpPEHYAAALRWVNRLHlrgrlvyerVRTGLPDPERPRLDpdSLAGkldfkphpFRAWLEAELGRRFdy 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1429 ---ESAQQL---------EAQTKLS------DDLQRQKE------SAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSD 1484
Cdd:COG4913 562 vcvDSPEELrrhpraitrAGQVKGNgtrhekDDRRRIRSryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELD 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1485 DLQRQKESAQQLVDNLKMELDKE--RKELAQVKSAIGAQTKLSDD---LECQKESVQQLVDNLKVELEKERKELAKVNSA 1559
Cdd:COG4913 642 ALQERREALQRLAEYSWDEIDVAsaEREIAELEAELERLDASSDDlaaLEEQLEELEAELEELEEELDELKGEIGRLEKE 721
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 386764407 1560 FEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKL 1630
Cdd:COG4913 722 LEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERA 792
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1153-1876 |
4.86e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.16 E-value: 4.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1153 KELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVEL 1232
Cdd:PTZ00121 1095 EAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAED 1174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1233 EKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNL 1312
Cdd:PTZ00121 1175 AKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEI 1254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1313 KVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDK----------ERKELAQVKSVIEAQTKLSDDL 1382
Cdd:PTZ00121 1255 RKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKkadeakkkaeEAKKADEAKKKAEEAKKKADAA 1334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1383 QRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKvEL 1462
Cdd:PTZ00121 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELK-KA 1413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1463 DKERKELAQVKSVIEAQTKlSDDLQRQKESAQQlVDNLKMELDKERKELAQVKSAigAQTKLSDDLECQKESVQQlVDNL 1542
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKK-ADEAKKKAEEAKK-ADEAKKKAEEAKKAEEAKKKA--EEAKKADEAKKKAEEAKK-ADEA 1488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1543 KVELEKERKELAKVNSAFEAQTKlSDDLKLQKEDAQREvflvKERLVKEKREFEvKLATLEDIIETLEMRctqMEEERAT 1622
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKK-ADEAKKAEEAKKAD----EAKKAEEAKKAD-EAKKAEEKKKADELK---KAEELKK 1559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1623 AYEQINKLENRCQEKDNVKSSQLQVETFKVEclhhqlKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRlMTEIAEHNQVK 1702
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMALRKAEEAKKAE------EARIEEVMKLYEEEKKMKAEEAKKAEEAKIK-AEELKKAEEEK 1632
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1703 DQLAQITdiPKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHgaqilRMEETAREVGNKNAELCELIE 1782
Cdd:PTZ00121 1633 KKVEQLK--KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE-----EDEKKAAEALKKEAEEAKKAE 1705
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1783 FYRnRVEALERLLLASNQELEELNSIQSNQAEGvRDLGDTYSAAEGRQTEsdQDKERYQKLALDCKILQAKYRDAKDEIK 1862
Cdd:PTZ00121 1706 ELK-KKEAEEKKKAEELKKAEEENKIKAEEAKK-EAEEDKKKAEEAKKDE--EEKKKIAHLKKEEEKKAEEIRKEKEAVI 1781
|
730
....*....|....
gi 386764407 1863 RCEKKIKDQRLEME 1876
Cdd:PTZ00121 1782 EEELDEEDEKRRME 1795
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
797-1605 |
5.74e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 5.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 797 IEKRFENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQningiikrnkfitslevntekvkqyITDL-EEEAFKRKQKV 875
Cdd:TIGR02169 242 IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKK-------------------------IKDLgEEEQLRVKEKI 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 876 VQLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEairfintiRDRLQQDFngvntpqqlgtcmteflkmyDQMEVRYEES 955
Cdd:TIGR02169 297 GELEAEIASLERSIAEKERELEDAEERLAKLEAE--------IDKLLAEI--------------------EELEREIEEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 956 SSLVEKLTESQAKLEMQVAELQVELENKDTNqhSGALIKQLNDTIQNLEKVNAKLSEDNTvshTVHSKLNESLLKAQKEL 1035
Cdd:TIGR02169 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKE--FAETRDELKDYREKLEKLKREINELKR---ELDRLQEELQRLSEELA 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1036 DLRAKI---IENLEASERNLSMKLCELKDLKNKLKSsdekIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQNQSLTQL 1112
Cdd:TIGR02169 424 DLNAAIagiEAKINELEEEKEDKALEIKKQEWKLEQ----LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1113 KedALENCVLMSTKLEELqakLQEGQQLVDSQKLELDMNRKELAL-VKSAYEAQTK---LSDD---------LQRQKESG 1179
Cdd:TIGR02169 500 R--ASEERVRGGRAVEEV---LKASIQGVHGTVAQLGSVGERYATaIEVAAGNRLNnvvVEDDavakeaielLKRRKAGR 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1180 QQLVDNLKVELEKERKELAHVNSAIGAQTKLSD-DLECQKESGQQLVDNLKVE-LEKERKELAQVKSVieaqtKLSDDLq 1257
Cdd:TIGR02169 575 ATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEfDPKYEPAFKYVFGDTLVVEdIEAARRLMGKYRMV-----TLEGEL- 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1258 REKESA----QQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKE-------RKELAQV 1326
Cdd:TIGR02169 649 FEKSGAmtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDAsrkigeiEKEIEQL 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1327 NSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRqkESAQQLVDNLKVELDKERKE 1406
Cdd:TIGR02169 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA--RLSHSRIPEIQAELSKLEEE 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1407 LAKVKSVIEAQTKLSDDLQRQKESAQQlEAQTKLS--DDLQRQKESAQQLVDNLKVELDKERKEL----AQVKSVIEAQT 1480
Cdd:TIGR02169 807 VSRIEARLREIEQKLNRLTLEKEYLEK-EIQELQEqrIDLKEQIKSIEKEIENLNGKKEELEEELeeleAALRDLESRLG 885
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1481 KLS---DDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQ----TKLSDDLECQKESVQQLVDNLKVELEKERKE- 1552
Cdd:TIGR02169 886 DLKkerDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALeeelSEIEDPKGEDEEIPEEELSLEDVQAELQRVEe 965
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 386764407 1553 ----LAKVNSA----FEAQTKLSDDLKLQKEDAQREVFLVKERLVK-EKREFEVKLATLEDI 1605
Cdd:TIGR02169 966 eiraLEPVNMLaiqeYEEVLKRLDELKEKRAKLEEERKAILERIEEyEKKKREVFMEAFEAI 1027
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1247-1966 |
9.95e-10 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 63.97 E-value: 9.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1247 EAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAqqlvdNLKVELD-KERKELAQ 1325
Cdd:pfam05483 74 EGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKV-----SLKLEEEiQENKDLIK 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1326 VNSAFEAQTKL-----------SDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIE-AQTKLSDDLQRQKESAQQLV 1393
Cdd:pfam05483 149 ENNATRHLCNLlketcarsaekTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAEnARLEMHFKLKEDHEKIQHLE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1394 DNLKVEL-DKERKELAKVKSVIEAQTKLSD---DLQRQKESAQQLEAQTKLSDDLQRQKESAQqlvDNLKVELDKERKEL 1469
Cdd:pfam05483 229 EEYKKEInDKEKQVSLLLIQITEKENKMKDltfLLEESRDKANQLEEKTKLQDENLKELIEKK---DHLTKELEDIKMSL 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1470 AQVKSvieAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKE 1549
Cdd:pfam05483 306 QRSMS---TQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKII 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1550 RKELAKVNSAFEAQTKLSDDLKLQKEDAQReVFLVKERLVKEKREFevklatlEDIIETLEMRCTQMEEERATAYEQINK 1629
Cdd:pfam05483 383 TMELQKKSSELEEMTKFKNNKEVELEELKK-ILAEDEKLLDEKKQF-------EKIAEELKGKEQELIFLLQAREKEIHD 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1630 LENRCQEKDNVKSSQL-QVETFKVECLHHQLKS-EMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQ 1707
Cdd:pfam05483 455 LEIQLTAIKTSEEHYLkEVEDLKTELEKEKLKNiELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLK 534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1708 ITDIPKVVELQHRleaetaereeaqnklavvtGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEFYRNR 1787
Cdd:pfam05483 535 QIENLEEKEMNLR-------------------DELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENK 595
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1788 VEALERLLLASNQELEELNsiQSNQAEGVRdlgdtySAAEGRQTESDQDKerYQKLALDCKILQAKYRDAKDEIkrcEKK 1867
Cdd:pfam05483 596 CNNLKKQIENKNKNIEELH--QENKALKKK------GSAENKQLNAYEIK--VNKLELELASAKQKFEEIIDNY---QKE 662
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1868 IKDQRLEMEGKLEKMKnKMRSLYTAEVTRMKEKQERDAAKSASELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQH 1947
Cdd:pfam05483 663 IEDKKISEEKLLEEVE-KAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAK 741
|
730
....*....|....*....
gi 386764407 1948 AIISTNLRHLQMQPISETK 1966
Cdd:pfam05483 742 AALEIELSNIKAELLSLKK 760
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1240-1457 |
9.99e-10 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 62.93 E-value: 9.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1240 AQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDK- 1318
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEr 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1319 ------------------ERKELAQVNSAFEAQTKLSD---DLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTK 1377
Cdd:COG3883 92 aralyrsggsvsyldvllGSESFSDFLDRLSALSKIADadaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1378 lsdDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDN 1457
Cdd:COG3883 172 ---ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAG 248
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1324-1523 |
1.33e-09 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 62.54 E-value: 1.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1324 AQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDK- 1402
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEr 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1403 -----ERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESaqqlVDNLKVELDKERKELAQVKSVIE 1477
Cdd:COG3883 92 aralyRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAE----LEAKKAELEAKLAELEALKAELE 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 386764407 1478 AQTKlsdDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTK 1523
Cdd:COG3883 168 AAKA---ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
576-1365 |
2.13e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 2.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 576 LELDNERLNDKCAELKSIIDRGDQHLADINLQLIEKEKQ--------------IKDVGAEIQELRKRNINLENMLSQIAD 641
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEieelqkelyalaneISRLEQQKQILRERLANLERQLEELEA 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 642 KEASAASHAQHLKQCGELLRAKYEVCRNELIAKNAAQDELVrmmmvpdgETLNGRVRQLIDLEMMHDEHNKMYAQMLKQL 721
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE--------AELEELESRLEELEEQLETLRSKVAQLELQI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 722 NELSAKhdnmthshldfVKRTEIELETKNAQImafdehnnhfDRFLTRIFTLLR--SRNCPKSTTMGSATNFLESMHIEK 799
Cdd:TIGR02168 396 ASLNNE-----------IERLEARLERLEDRR----------ERLQQEIEELLKklEEAELKELQAELEELEEELEELQE 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 800 RFENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQningiikrnkfITSLEVNTEKVKQYiTDLEEEAFKRKQKVVQLE 879
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDAAERELAQLQAR-----------LDSLERLQENLEGF-SEGVKALLKNQSGLSGIL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 880 NTLSKEQSNAKEMAQRLDIAQQEIKDYHVEairfintirDRLQQDFNGVNTPQQLGTCMTEFLKMYDQMEVRYEESSSLV 959
Cdd:TIGR02168 523 GVLSELISVDEGYEAAIEAALGGRLQAVVV---------ENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREI 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 960 EKLTESQAKLEMQVAELQVELENKDTNQHSGALIKqlnDTIQN-LEKVNAKLSEDNTVS---HTVH---------SKLNE 1026
Cdd:TIGR02168 594 LKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVV---DDLDNaLELAKKLRPGYRIVTldgDLVRpggvitggsAKTNS 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1027 SLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLER--- 1103
Cdd:TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEEria 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1104 ----------NQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQ 1173
Cdd:TIGR02168 751 qlskelteleAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE 830
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1174 RQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLS 1253
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1254 DDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKE-----SAQQLVDNLKvELDKERKELAQVNS 1328
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALEnkiedDEEEARRRLK-RLENKIKELGPVNL 989
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 386764407 1329 A----FEAQTKLSDDLQREKESAQQLVDNLK---VELDKERKEL 1365
Cdd:TIGR02168 990 AaieeYEELKERYDFLTAQKEDLTEAKETLEeaiEEIDREARER 1033
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1231-1457 |
2.51e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 61.70 E-value: 2.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1231 ELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVD 1310
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1311 NLKVELDKERKELAQVNSAFEAQTKLS----DDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQK 1386
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLALLLSpedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 386764407 1387 ESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDN 1457
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAAL 251
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1238-1500 |
3.61e-09 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 61.96 E-value: 3.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1238 ELAQVKS--VIEA---QTKLSDDLQREKES----AQQLVDNLKVEL------------DKERKELAQVNSAFeAQTKLSD 1296
Cdd:COG3206 86 QIEILKSrpVLERvvdKLNLDEDPLGEEASreaaIERLRKNLTVEPvkgsnvieisytSPDPELAAAVANAL-AEAYLEQ 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1297 DLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEA--QTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEA 1374
Cdd:COG3206 165 NLELRREEARKALEFLEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAA 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1375 qtkLSDDLQRQKESAQQLVDNlkVELDKERKELAKVKSVI-EAQTKLSDD------LQRQKESAQQL--EAQTKLSDDLQ 1445
Cdd:COG3206 245 ---LRAQLGSGPDALPELLQS--PVIQQLRAQLAELEAELaELSARYTPNhpdviaLRAQIAALRAQlqQEAQRILASLE 319
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 386764407 1446 RQKESAQQLVDNLKVELDKERKELAQVKsviEAQTKLSdDLQRQKESAQQLVDNL 1500
Cdd:COG3206 320 AELEALQAREASLQAQLAQLEARLAELP---ELEAELR-RLEREVEVARELYESL 370
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1217-1442 |
5.21e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.55 E-value: 5.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1217 QKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNsafEAQTKLSD 1296
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE---KEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1297 DLQRQKES-AQQLVDNLKVELDKERKELAQVNSAFEAQTKLS---------DDLQREKESAQQLVDNLKVELDKERKELA 1366
Cdd:COG4942 98 ELEAQKEElAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQylkylaparREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386764407 1367 QVKSVIEAQTKlsdDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSD 1442
Cdd:COG4942 178 ALLAELEEERA---ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAA 250
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1172-1756 |
1.09e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.42 E-value: 1.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1172 LQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTK 1251
Cdd:TIGR04523 45 IKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEV 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1252 LSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVN---S 1328
Cdd:TIGR04523 125 ELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLElllS 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1329 AFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVI-EAQTKLSDDLQRQKESAQQLVDNLKVELDKERKEL 1407
Cdd:TIGR04523 205 NLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEIsNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1408 AKVKSVIEAQTKLSDdLQRQKESAQQLEAQTKLsDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQ 1487
Cdd:TIGR04523 285 ELEKQLNQLKSEISD-LNNQKEQDWNKELKSEL-KNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQ 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1488 RQKESAQQLVDNLKMELDKERKELAQVKSAIgaqTKLSDDLECQKESVQQLVDNLKV------ELEKERKELAKVNSAFE 1561
Cdd:TIGR04523 363 RELEEKQNEIEKLKKENQSYKQEIKNLESQI---NDLESKIQNQEKLNQQKDEQIKKlqqekeLLEKEIERLKETIIKNN 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1562 AQTKlsddlKLQKEDAQREvfLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQE-KDNV 1640
Cdd:TIGR04523 440 SEIK-----DLTNQDSVKE--LIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKElEEKV 512
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1641 KSSQLQVETFKVEclHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFvqSRLMTEIAEHNQVKDQLAQITD--IPKVVELQ 1718
Cdd:TIGR04523 513 KDLTKKISSLKEK--IEKLESEKKEKESKISDLEDELNKDDFELKK--ENLEKEIDEKNKEIEELKQTQKslKKKQEEKQ 588
|
570 580 590
....*....|....*....|....*....|....*...
gi 386764407 1719 HRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEH 1756
Cdd:TIGR04523 589 ELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEN 626
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1231-1960 |
1.09e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 60.76 E-value: 1.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1231 ELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQ-VNSAFEAQTKLSDDLQRQKESAQQLV 1309
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLlYLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1310 DNLKVELDKERKELAQVNSafeaqtklsddLQREKESAQQLVDNLKVELDKERKELAQVKsvieaqtklsDDLQRQKESA 1389
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLK-----------ENKEEEKEKKLQEEELKLLAKEEEELKSEL----------LKLERRKVDD 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1390 QQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKEsaqqlvDNLKVELDKERKEL 1469
Cdd:pfam02463 313 EEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLE------EELLAKKKLESERL 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1470 AQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGaqtklsDDLECQKESVQQLVDNLKVELEKE 1549
Cdd:pfam02463 387 SSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEE------ESIELKQGKLTEEKEELEKQELKL 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1550 RKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEkREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINK 1629
Cdd:pfam02463 461 LKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKE-SKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVE 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1630 LENRcqekDNVKSSQLQVETFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQIT 1709
Cdd:pfam02463 540 NYKV----AISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1710 DIPKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITREL-----DNARLEHGAQILRMEETAREVGNKNAELCELIEFY 1784
Cdd:pfam02463 616 DEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEeglaeKSEVKASLSELTKELLEIQELQEKAESELAKEEIL 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1785 RNRVE------ALERLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEGRQTESDQDKERYQKLALDCKILQAKYRDAK 1858
Cdd:pfam02463 696 RRQLEikkkeqREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKE 775
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1859 DEIKRCEKKIKDQRLEMEGKLEKMKNKMRSLYTAEVTRMKEKQERDAAKSASELEALTAQNAKYEEHTRKLSNQIVRLNE 1938
Cdd:pfam02463 776 LAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEE 855
|
730 740
....*....|....*....|..
gi 386764407 1939 KILEQQKQHAIISTNLRHLQMQ 1960
Cdd:pfam02463 856 LERLEEEITKEELLQELLLKEE 877
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1155-1479 |
1.48e-08 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 60.35 E-value: 1.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1155 LALVKSAYEAQTKLSDDLQRQKESGQQLVD------NLKVELEKERKELAHVNSAIGAQTKLS------DDLECQKESGQ 1222
Cdd:COG3096 288 LELRRELFGARRQLAEEQYRLVEMARELEElsaresDLEQDYQAASDHLNLVQTALRQQEKIEryqedlEELTERLEEQE 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1223 QLVDNLKVELE--KERKELAQvKSVIEAQTKLSD-----DLQ-----------REKESAQQL-------VDNLKVELDKE 1277
Cdd:COG3096 368 EVVEEAAEQLAeaEARLEAAE-EEVDSLKSQLADyqqalDVQqtraiqyqqavQALEKARALcglpdltPENAEDYLAAF 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1278 RKELAQVNSA-FEAQTKLS--DDLQRQKESAQQLVDNLKVELDKERkelaqvnsAFEAQTKLSDDLQREKESAQQlVDNL 1354
Cdd:COG3096 447 RAKEQQATEEvLELEQKLSvaDAARRQFEKAYELVCKIAGEVERSQ--------AWQTARELLRRYRSQQALAQR-LQQL 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1355 KVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLvDNLKVELDKERKEL-AKVKSVIEAQTKLSDDL----QRQKE 1429
Cdd:COG3096 518 RAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEEL-EELLAELEAQLEELeEQAAEAVEQRSELRQQLeqlrARIKE 596
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 386764407 1430 SAQQ----LEAQTKLS----------DDLQRQKESAQQLVDNLKvELDKERKELAQVKSVIEAQ 1479
Cdd:COG3096 597 LAARapawLAAQDALErlreqsgealADSQEVTAAMQQLLERER-EATVERDELAARKQALESQ 659
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
815-1419 |
1.59e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.15 E-value: 1.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 815 ADDLKRELDDLRSKNEELAKQningiikrnkfitslevnTEKVKQyitdlEEEAFKRKQKVVQLENTLSKEQSNAKEMAQ 894
Cdd:PTZ00121 1317 ADEAKKKAEEAKKKADAAKKK------------------AEEAKK-----AAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 895 RLDIAQQEIKDYHVEAIRFINTIRDRLQQDFNGVNTPQQlgtcMTEFLKMYDQMEVRYEESSSLVEKLTESQAKLEMQVA 974
Cdd:PTZ00121 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK----AAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEA 1449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 975 ELQVELENKDTNQHSGALIKQLNDTIQnlekvnaKLSEDNTVSHTVHSKLNESLLKAQkelDLRAKIIENLEASernlsm 1054
Cdd:PTZ00121 1450 KKKAEEAKKAEEAKKKAEEAKKADEAK-------KKAEEAKKADEAKKKAEEAKKKAD---EAKKAAEAKKKAD------ 1513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1055 klcELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQNQSLTQLKEDALENCVLMSTKLEELQakl 1134
Cdd:PTZ00121 1514 ---EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK--- 1587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1135 qegqqlvdsqklelDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVElEKERKELAHVNSAIGAQTKLSDDL 1214
Cdd:PTZ00121 1588 --------------KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA-EEEKKKVEQLKKKEAEEKKKAEEL 1652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1215 ECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQlVDNLKVELDKERKELAQVNSAFEAQTKL 1294
Cdd:PTZ00121 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK-AEELKKKEAEEKKKAEELKKAEEENKIK 1731
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1295 SDDLQRQKESAQQLVDNLKVElDKERKELAQVNSAFEaqtKLSDDLQREKESAqqlvdnLKVELDKE-RKELAQVKSVIE 1373
Cdd:PTZ00121 1732 AEEAKKEAEEDKKKAEEAKKD-EEEKKKIAHLKKEEE---KKAEEIRKEKEAV------IEEELDEEdEKRRMEVDKKIK 1801
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 386764407 1374 AQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTK 1419
Cdd:PTZ00121 1802 DIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEAD 1847
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
828-1485 |
2.12e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.65 E-value: 2.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 828 KNEELAKQNI-NGIIKRNKFITSLEVNTEKVKQYITDLEEEAFKRKQKVVQLENTLSKEQSNAKEMAQRLDIAQQEIKdy 906
Cdd:TIGR04523 50 KNKEKELKNLdKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELN-- 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 907 hveairfintirdRLQQDFNGVNtpQQLGTCMTEFLKMYDQMEVRYEESSSLVEKLTESQAKLEMQVAELQVELENKDTN 986
Cdd:TIGR04523 128 -------------KLEKQKKENK--KNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 987 QHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKD-LKNK 1065
Cdd:TIGR04523 193 KNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKqLSEK 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1066 LKSSDEKIAQIKETyEEQIKALQAKC-DMEAKKNEHLERNQNQSLTQLKEdalencvlmstKLEELQAKLQEGQQLVDS- 1143
Cdd:TIGR04523 273 QKELEQNNKKIKEL-EKQLNQLKSEIsDLNNQKEQDWNKELKSELKNQEK-----------KLEEIQNQISQNNKIISQl 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1144 ----QKLELDMNRKELALVKSAYEAQTKLS--DDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQ 1217
Cdd:TIGR04523 341 neqiSQLKKELTNSESENSEKQRELEEKQNeiEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQE 420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1218 KESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDD 1297
Cdd:TIGR04523 421 KELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKK 500
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1298 LQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLV--DNLKVELDKERKELAQVKSVIEAq 1375
Cdd:TIGR04523 501 LNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELkkENLEKEIDEKNKEIEELKQTQKS- 579
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1376 tklsddLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEaqtKLSDDLQRQKESAQQLEAQTKlsdDLQRQKESAQQLV 1455
Cdd:TIGR04523 580 ------LKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKIS---SLEKELEKAKKENEKLSSIIK---NIKSKKNKLKQEV 647
|
650 660 670
....*....|....*....|....*....|
gi 386764407 1456 DNLKVELDKERKELAQVKSVIEAQTKLSDD 1485
Cdd:TIGR04523 648 KQIKETIKEIRNKWPEIIKKIKESKTKIDD 677
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1427-1644 |
2.58e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.24 E-value: 2.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1427 QKESAQQLEAQTKlsdDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDK 1506
Cdd:COG4942 18 QADAAAEAEAELE---QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1507 ERKELAQVKSAIGAQTKL------------------SDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSD 1568
Cdd:COG4942 95 LRAELEAQKEELAELLRAlyrlgrqpplalllspedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386764407 1569 DLKLQKEDAQREvflvKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQ 1644
Cdd:COG4942 175 ELEALLAELEEE----RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1155-1389 |
3.77e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.85 E-value: 3.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1155 LALVKSAYEAQTKLsDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEK 1234
Cdd:COG4942 16 AAQADAAAEAEAEL-EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1235 ERKELAQVKSVIEAQTKlsddlqrekeSAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKE---SAQQLVDN 1311
Cdd:COG4942 95 LRAELEAQKEELAELLR----------ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEelrADLAELAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 386764407 1312 LKVELDKERKELAQVNSAFEAQTKlsdDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESA 1389
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERA---ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1026-1632 |
4.66e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.54 E-value: 4.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1026 ESLLKAQKELDLRAKIIENLEASERNLSMKLCELKD-LKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLE-R 1103
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKeLEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEElE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1104 NQNQSLTQLKEdalencvlmstKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSddlqrqkesgqQLV 1183
Cdd:PRK03918 245 KELESLEGSKR-----------KLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLS-----------EFY 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1184 DNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESgqqlvdnlKVELEKERKELAQVKSVIEAQTKLSDDLQRekesa 1263
Cdd:PRK03918 303 EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER--------LEELKKKLKELEKRLEELEERHELYEEAKA----- 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1264 qqlvdnLKVELDKERKELAqvNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEaqtklsddlqrE 1343
Cdd:PRK03918 370 ------KKEELERLKKRLT--GLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIE-----------E 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1344 KESAQQLVDNLKVELDKERKelaqvKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIeaqtklsdd 1423
Cdd:PRK03918 431 LKKAKGKCPVCGRELTEEHR-----KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELI--------- 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1424 lqRQKESAQQL-EAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKm 1502
Cdd:PRK03918 497 --KLKELAEQLkELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELA- 573
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1503 ELDKERKELA-----QVKSAIGAQTKLSD------DLECQKESVQQLVDNLKVELEKERKELAKVNSAFE-AQTKLSDDL 1570
Cdd:PRK03918 574 ELLKELEELGfesveELEERLKELEPFYNeylelkDAEKELEREEKELKKLEEELDKAFEELAETEKRLEeLRKELEELE 653
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 386764407 1571 KLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLEN 1632
Cdd:PRK03918 654 KKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
946-1943 |
5.15e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 58.65 E-value: 5.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 946 DQMEVRYEESSSLVEKLTESQAKLEMQV-AELQVELENKDTNQHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKL 1024
Cdd:pfam01576 22 QKAESELKELEKKHQQLCEEKNALQEQLqAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERSQQLQNEKKKM 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1025 NESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLE-- 1102
Cdd:pfam01576 102 QQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSkl 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1103 RNQNQSLTQLKEDALENCVLMSTKLE-----------ELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDD 1171
Cdd:pfam01576 182 KNKHEAMISDLEERLKKEEKGRQELEkakrklegestDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNN 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1172 LQRQKESGQQLVDNLKVELEKERkelAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELE---KERKELAQVKSVIEA 1248
Cdd:pfam01576 262 ALKKIRELEAQISELQEDLESER---AARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQElrsKREQEVTELKKALEE 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1249 QTKLSD-DLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLvdnlKVELDKERKEL-AQV 1326
Cdd:pfam01576 339 ETRSHEaQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQA----KQDSEHKRKKLeGQL 414
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1327 NsafEAQTKLSDDlQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLvdnLKVELDKERKE 1406
Cdd:pfam01576 415 Q---ELQARLSES-ERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQEL---LQEETRQKLNL 487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1407 LAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSD----DLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKL 1482
Cdd:pfam01576 488 STRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQaqlsDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAA 567
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1483 SDDLQRQKESAQQLVDNLKMELDKERkelaQVKSAIGAQTKLSDDL--ECQKESVQQLVDNLKVELEKERKELAKVNSAF 1560
Cdd:pfam01576 568 YDKLEKTKNRLQQELDDLLVDLDHQR----QLVSNLEKKQKKFDQMlaEEKAISARYAEERDRAEAEAREKETRALSLAR 643
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1561 EAQTKLsdDLKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEmrcTQMEEERatayEQINKLENRCQEKDNV 1640
Cdd:pfam01576 644 ALEEAL--EAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALE---QQVEEMK----TQLEELEDELQATEDA 714
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1641 KssqLQVETfKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDfvqsrlmteiAEHNQVKDQLAQITDIPKVVE---- 1716
Cdd:pfam01576 715 K---LRLEV-NMQALKAQFERDLQARDEQGEEKRRQLVKQVRELE----------AELEDERKQRAQAVAAKKKLEldlk 780
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1717 -LQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEfyrnRVEALERLL 1795
Cdd:pfam01576 781 eLEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKLKNLEAELLQLQE----DLAASERAR 856
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1796 LASNQELEELNSIQSNQAEGVRDLGDTYSAAEGR-----------QTESDQDKERYQKLALDCKILQAKY---RDAKDEI 1861
Cdd:pfam01576 857 RQAQQERDELADEIASGASGKSALQDEKRRLEARiaqleeeleeeQSNTELLNDRLRKSTLQVEQLTTELaaeRSTSQKS 936
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1862 KRCEKKIKDQRLEMEGKLEKMKNKMRSLYTAEVTRMKekqerdaAKSASELEALTAqnakyEEHTRKLSNQIVRLNEKIL 1941
Cdd:pfam01576 937 ESARQQLERQNKELKAKLQEMEGTVKSKFKSSIAALE-------AKIAQLEEQLEQ-----ESRERQAANKLVRRTEKKL 1004
|
..
gi 386764407 1942 EQ 1943
Cdd:pfam01576 1005 KE 1006
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1152-1542 |
5.74e-08 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 58.43 E-value: 5.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1152 RKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLsddlecqkesgqqlvDNLKVE 1231
Cdd:PRK04863 292 RRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKI---------------ERYQAD 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1232 LEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKveldkerKELAQVNSAFEAQTKLSDDLQRQK---ESAQQL 1308
Cdd:PRK04863 357 LEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELK-------SQLADYQQALDVQQTRAIQYQQAVqalERAKQL 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1309 -------VDNLKVELDKER-KELAQVNSAFEAQTKLS--DDLQREKESAQQLVDNLKVELDkeRKELAQVksvieAQTKL 1378
Cdd:PRK04863 430 cglpdltADNAEDWLEEFQaKEQEATEELLSLEQKLSvaQAAHSQFEQAYQLVRKIAGEVS--RSEAWDV-----ARELL 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1379 SdDLQRQKESAQQLVdNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEA----QTKLSDDLQRQKESAQQL 1454
Cdd:PRK04863 503 R-RLREQRHLAEQLQ-QLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQlqeeLEARLESLSESVSEARER 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1455 VDNLK---VELDKERKELAQVKSV-IEAQ---TKLSDDLQRQKESAQQLVDNLKMELDKERkELAQVKsaigaqtklsDD 1527
Cdd:PRK04863 581 RMALRqqlEQLQARIQRLAARAPAwLAAQdalARLREQSGEEFEDSQDVTEYMQQLLERER-ELTVER----------DE 649
|
410
....*....|....*
gi 386764407 1528 LECQKESVQQLVDNL 1542
Cdd:PRK04863 650 LAARKQALDEEIERL 664
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1217-1959 |
6.87e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 57.88 E-value: 6.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1217 QKESGQQLVDNLKVELEKERKELAQ-VKSVIEAQTKLSDDLQREKESAQQlVDNLKVELDKERKELAQVNSAFEAQtkls 1295
Cdd:pfam01576 9 AKEEELQKVKERQQKAESELKELEKkHQQLCEEKNALQEQLQAETELCAE-AEEMRARLAARKQELEEILHELESR---- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1296 ddLQRQKESAQQLvdnlkvelDKERKELAQVNSAFEAQTKlsddlqrEKESAQQLVDNLKVELDKERKELAQVKSVIEAQ 1375
Cdd:pfam01576 84 --LEEEEERSQQL--------QNEKKKMQQHIQDLEEQLD-------EEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1376 -TKLSDDLQRQKESAQQLVDNLKVELDKErKELAKVKSVIEAQ-TKLSDDLQRQKESAQQLEAQTKLSD----DLQRQKE 1449
Cdd:pfam01576 147 nSKLSKERKLLEERISEFTSNLAEEEEKA-KSLSKLKNKHEAMiSDLEERLKKEEKGRQELEKAKRKLEgestDLQEQIA 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1450 SAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSaigAQTKLSDDLE 1529
Cdd:pfam01576 226 ELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEK---QRRDLGEELE 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1530 CQKESVQQLVDNLKVELE---KERKELAKVNSAFEAQTKLSD---------------DLKLQKEDAQRevflVKERLVKE 1591
Cdd:pfam01576 303 ALKTELEDTLDTTAAQQElrsKREQEVTELKKALEEETRSHEaqlqemrqkhtqaleELTEQLEQAKR----NKANLEKA 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1592 KREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKS------SQLQVETFKV-------ECLHHQ 1658
Cdd:pfam01576 379 KQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAelaeklSKLQSELESVssllneaEGKNIK 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1659 LKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDIPKVVELQhrLEAETAEREEAQNKLAVV 1738
Cdd:pfam01576 459 LSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQ--LSTLQAQLSDMKKKLEED 536
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1739 TGRLDEI-------TRELDNARL---EHGAQILRMEETAREVGNKNAELCELIEFYRNRVEALERLLLASNQELEELNSI 1808
Cdd:pfam01576 537 AGTLEALeegkkrlQRELEALTQqleEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAI 616
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1809 QSNQAEGvRDLGDtysaAEGRQTES---------DQDKERYQKLALDCKILQAKYRD---AKDEIKRCEKKIKDQRLEME 1876
Cdd:pfam01576 617 SARYAEE-RDRAE----AEAREKETralslaralEEALEAKEELERTNKQLRAEMEDlvsSKDDVGKNVHELERSKRALE 691
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1877 GKLEKMKNKMR----SLYTAEVTRMKEKQERDAAKSASELEaLTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHAIIST 1952
Cdd:pfam01576 692 QQVEEMKTQLEeledELQATEDAKLRLEVNMQALKAQFERD-LQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVA 770
|
....*..
gi 386764407 1953 NLRHLQM 1959
Cdd:pfam01576 771 AKKKLEL 777
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1032-1929 |
7.57e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 58.13 E-value: 7.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1032 QKELDLRAKII--ENLEASERNLSM-KLCELKDLKNKLKSSDEKIAQIKEtYEEQIKALQAKCDMEAKKNEHLE------ 1102
Cdd:TIGR00606 217 EKACEIRDQITskEAQLESSREIVKsYENELDPLKNRLKEIEHNLSKIMK-LDNEIKALKSRKKQMEKDNSELElkmekv 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1103 -RNQNQSLTQLKEDALENCVLMSTKLEELQ---AKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTkLSDDLQRQKES 1178
Cdd:TIGR00606 296 fQGTDEQLNDLYHNHQRTVREKERELVDCQrelEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHI-RARDSLIQSLA 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1179 GQQLVDNLK------------VELEKERKE---------LAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERK 1237
Cdd:TIGR00606 375 TRLELDGFErgpfserqiknfHTLVIERQEdeaktaaqlCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQE 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1238 ELAQVKSVIEAQTKLSDDLQREKEsaqqlvdnlkvELDKERKELAQVNSAFEAQTKLSDDLQRQKESAqqlvdNLKVELD 1317
Cdd:TIGR00606 455 ELKFVIKELQQLEGSSDRILELDQ-----------ELRKAERELSKAEKNSLTETLKKEVKSLQNEKA-----DLDRKLR 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1318 KERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDkerkELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLK 1397
Cdd:TIGR00606 519 KLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSD----ELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLA 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1398 veldKERKELAKVKsvieaQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQqlVDNLKVELDKERKELAqvksVIE 1477
Cdd:TIGR00606 595 ----KLNKELASLE-----QNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESD--LERLKEEIEKSSKQRA----MLA 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1478 AQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDlecQKESVQQLVDNLKVELEKERKELAKVN 1557
Cdd:TIGR00606 660 GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPD---KLKSTESELKKKEKRRDEMLGLAPGRQ 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1558 SAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVKLATLE--DIIETLEMRCTQMEEERATAYEQINKLENRCQ 1635
Cdd:TIGR00606 737 SIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEEsaKVCLTDVTIMERFQMELKDVERKIAQQAAKLQ 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1636 EKDNVKS-SQLQVETFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMtEIAEHNQVKDQLAQITdIPKV 1714
Cdd:TIGR00606 817 GSDLDRTvQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKL-QIGTNLQRRQQFEEQL-VELS 894
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1715 VELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEFYRnrvEALERL 1794
Cdd:TIGR00606 895 TEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQ---DGKDDY 971
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1795 LLASNQELEELNSiQSNQAEGVRDLGDTYSAAEGRQTESDQDKERYQKLALDCKILQAKYRDAKDEIKRCEKKI-KDQRL 1873
Cdd:TIGR00606 972 LKQKETELNTVNA-QLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMgQMQVL 1050
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*.
gi 386764407 1874 EMEGKLEKMKNKMRSLYTAEVTRMKEKQERDAAKSASELEALTAQNAKYEEHTRKL 1929
Cdd:TIGR00606 1051 QMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREM 1106
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
954-1478 |
9.41e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 57.36 E-value: 9.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 954 ESSSLVEKLTEsqakLEMQVAELQVELENKDTNQHSGALIKQLNDTIqnLEKVNAKLSEDNTVSHTVhSKLNESLLKAQK 1033
Cdd:PRK02224 200 EEKDLHERLNG----LESELAELDEEIERYEEQREQARETRDEADEV--LEEHEERREELETLEAEI-EDLRETIAETER 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1034 ELDLRAKIIENLEA------SERNLSMKLCELKDLknklksSDEKIAQIKETYEEQIKALQAKCdMEAKKNEHLERNQNQ 1107
Cdd:PRK02224 273 EREELAEEVRDLRErleeleEERDDLLAEAGLDDA------DAEAVEARREELEDRDEELRDRL-EECRVAAQAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1108 SLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKL-------ELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQ 1180
Cdd:PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREeieeleeEIEELRERFGDAPVDLGNAEDFLEELREERDELR 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1181 QLVDNLKVELEKERKELAHvNSAIGAQTKLS---------------DDLECQKESGQQLVDNLKVELEKERKELAQVKSV 1245
Cdd:PRK02224 426 EREAELEATLRTARERVEE-AEALLEAGKCPecgqpvegsphvetiEEDRERVEELEAELEDLEEEVEEVEERLERAEDL 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1246 IEAQTKLsDDLQREKESAQQLVDNLKVELDKERKELAQVNsafEAQTKLSDDLQRQKESAQQL---VDNLKVELDKERKE 1322
Cdd:PRK02224 505 VEAEDRI-ERLEERREDLEELIAERRETIEEKRERAEELR---ERAAELEAEAEEKREAAAEAeeeAEEAREEVAELNSK 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1323 LAQVNSAFEAQTKLSDDLQREKESAQQLvdnlkVELDKERKELAQVKSviEAQTKLSDDLQRQKEsaqqlvdnLKVELDK 1402
Cdd:PRK02224 581 LAELKERIESLERIRTLLAAIADAEDEI-----ERLREKREALAELND--ERRERLAEKRERKRE--------LEAEFDE 645
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386764407 1403 ERKElakvksviEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKvELDKERKELAQVKSVIEA 1478
Cdd:PRK02224 646 ARIE--------EAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELE-ELRERREALENRVEALEA 712
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1232-1604 |
1.43e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 57.27 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1232 LEKERKELAQVKSVIEAQTKLSDdLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLS------DDLQRQKESA 1305
Cdd:COG3096 288 LELRRELFGARRQLAEEQYRLVE-MARELEELSARESDLEQDYQAASDHLNLVQTALRQQEKIEryqedlEELTERLEEQ 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1306 QQLVDNLKVELD--KERKELAQvNSAFEAQTKLSD-----DLQ-----------REKESAQQL--VDNLKVELDKERKEL 1365
Cdd:COG3096 367 EEVVEEAAEQLAeaEARLEAAE-EEVDSLKSQLADyqqalDVQqtraiqyqqavQALEKARALcgLPDLTPENAEDYLAA 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1366 AQVK------SVIEAQTKLS--DDLQRQKESAQQLVDNLKVELDKERkelakvkSVIEAQTKLSD--DLQRQKESAQQLE 1435
Cdd:COG3096 446 FRAKeqqateEVLELEQKLSvaDAARRQFEKAYELVCKIAGEVERSQ-------AWQTARELLRRyrSQQALAQRLQQLR 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1436 AQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDK---ERKELA 1512
Cdd:COG3096 519 AQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQlraRIKELA 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1513 QVKSA-IGAQ---TKLSDDLECQKESVQQLVDNLKVELEKERkelakvnsafeAQTKLSDDLKLQKEDAQREVflvkERL 1588
Cdd:COG3096 599 ARAPAwLAAQdalERLREQSGEALADSQEVTAAMQQLLERER-----------EATVERDELAARKQALESQI----ERL 663
|
410
....*....|....*.
gi 386764407 1589 VKEKREFEVKLATLED 1604
Cdd:COG3096 664 SQPGGAEDPRLLALAE 679
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1301-1522 |
1.44e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 55.99 E-value: 1.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1301 QKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKlsd 1380
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR--- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1381 DLQRQK------------ESAQQLVDNLKVeldkerkelakVKSVIEAQTKLSDDLQRQKEsaqQLEAQtklsddlQRQK 1448
Cdd:COG3883 94 ALYRSGgsvsyldvllgsESFSDFLDRLSA-----------LSKIADADADLLEELKADKA---ELEAK-------KAEL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 386764407 1449 ESAQQLVDNLKVELDKERKELAQVKsviEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQT 1522
Cdd:COG3883 153 EAKLAELEALKAELEAAKAELEAQQ---AEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAA 223
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1205-1807 |
1.79e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.59 E-value: 1.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1205 GAQTKLSDDLEcQKESgQQLVDNLKvELEKERKEL--------AQVKSVIEAQTKLSDDLQREKESAQQLvDNLKVELDK 1276
Cdd:PRK02224 187 GSLDQLKAQIE-EKEE-KDLHERLN-GLESELAELdeeieryeEQREQARETRDEADEVLEEHEERREEL-ETLEAEIED 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1277 ERKELAQvnsAFEAQTKLSDDLQRQKESAQQLVDnlkvELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQlvdnlkv 1356
Cdd:PRK02224 263 LRETIAE---TEREREELAEEVRDLRERLEELEE----ERDDLLAEAGLDDADAEAVEARREELEDRDEELRD------- 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1357 ELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQ-QLE 1435
Cdd:PRK02224 329 RLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPvDLG 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1436 AQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQtklsddlqRQKESAQQLVDNLKMELDKERKElaqvk 1515
Cdd:PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAG--------KCPECGQPVEGSPHVETIEEDRE----- 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1516 saigaqtklsddlecQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLsDDLKLQKEDAQREVFLVKERLvKEKREf 1595
Cdd:PRK02224 476 ---------------RVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRI-ERLEERREDLEELIAERRETI-EEKRE- 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1596 evKLATLEDIIETLEmrcTQMEEERATAYEQINKLEnRCQEKDNVKSSQLQVETFKVECLHH--QLKSEMATHNSLVEDL 1673
Cdd:PRK02224 538 --RAEELRERAAELE---AEAEEKREAAAEAEEEAE-EAREEVAELNSKLAELKERIESLERirTLLAAIADAEDEIERL 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1674 NRKLAEKVSKLDFVQSRLmteiAEHNQVKDQLAQITDIPKVVELQHRLEAETAEreeaqnkLAVVTGRLDEITRELDNAR 1753
Cdd:PRK02224 612 REKREALAELNDERRERL----AEKRERKRELEAEFDEARIEEAREDKERAEEY-------LEQVEEKLDELREERDDLQ 680
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 386764407 1754 LEHGAQILRMEETarevgnknAELCELIEFYRNRVEALERLllasNQELEELNS 1807
Cdd:PRK02224 681 AEIGAVENELEEL--------EELRERREALENRVEALEAL----YDEAEELES 722
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1231-1711 |
1.98e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.46 E-value: 1.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1231 ELEKERKELAQVKSVIEAQTklSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQ-QLV 1309
Cdd:COG4913 263 RYAAARERLAELEYLRAALR--LWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1310 DNLKVELDKERKELAQVNSAFEAQTKL-----------SDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKL 1378
Cdd:COG4913 341 EQLEREIERLERELEERERRRARLEALlaalglplpasAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1379 SDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTK-LSDDLQ-RQKESA--------------------QQLEA 1436
Cdd:COG4913 421 LRELEAEIASLERRKSNIPARLLALRDALAEALGLDEAELPfVGELIEvRPEEERwrgaiervlggfaltllvppEHYAA 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1437 ------QTKL------------SDDLQRQKESAQQLVDNLKVELDKER----KELAQVKSVI-----------------E 1477
Cdd:COG4913 501 alrwvnRLHLrgrlvyervrtgLPDPERPRLDPDSLAGKLDFKPHPFRawleAELGRRFDYVcvdspeelrrhpraitrA 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1478 AQTKLS------DDLQRQKE------SAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLV----DN 1541
Cdd:COG4913 581 GQVKGNgtrhekDDRRRIRSryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAeyswDE 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1542 LKV--------ELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREvflvKERLVKEKREFEVKLATLEDIIETLEMRC 1613
Cdd:COG4913 661 IDVasaereiaELEAELERLDASSDDLAALEEQLEELEAELEELEEE----LDELKGEIGRLEKELEQAEEELDELQDRL 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1614 TQMEEERATAYEQinKLENRCQEkdnvkSSQLQVETFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMT 1693
Cdd:COG4913 737 EAAEDLARLELRA--LLEERFAA-----ALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDA 809
|
570
....*....|....*...
gi 386764407 1694 EIAEHNQVKDQLAQITDI 1711
Cdd:COG4913 810 DLESLPEYLALLDRLEED 827
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1085-1548 |
2.19e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 56.46 E-value: 2.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1085 KALQAKCDmEAKKNEHLERNQNQSLTQLkEDALEncvlMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEA 1164
Cdd:PRK11281 39 ADVQAQLD-ALNKQKLLEAEDKLVQQDL-EQTLA----LLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1165 QTK--LSDDLQRQKEsgqQLVDNLKVELEKERKELAHVNS-AIGAQTklsddlecQKESGQQLVDNLKVELEKERKELaq 1241
Cdd:PRK11281 113 ETRetLSTLSLRQLE---SRLAQTLDQLQNAQNDLAEYNSqLVSLQT--------QPERAQAALYANSQRLQQIRNLL-- 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1242 vKSVIEAQTKLSDDlQREKESAQQLVDNLKVELdkERKELaqvnsafEAQTKLSDDLQRQKESA-------QQLVDNLKV 1314
Cdd:PRK11281 180 -KGGKVGGKALRPS-QRVLLQAEQALLNAQNDL--QRKSL-------EGNTQLQDLLQKQRDYLtariqrlEHQLQLLQE 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1315 ELDKERKELAQvNSAFEAQTklSDDLQREKESAqqLVdnlkveldkeRKELaqvksviEAQTKLSDDLQRQKESAQQLV- 1393
Cdd:PRK11281 249 AINSKRLTLSE-KTVQEAQS--QDEAARIQANP--LV----------AQEL-------EINLQLSQRLLKATEKLNTLTq 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1394 DNLKVE--LDKerkeLAKVKSVIEAQTK-------LSDDLQRQKESAQQLEAQTKLSDDlqrqkesaqqlVDNLKV---E 1461
Cdd:PRK11281 307 QNLRVKnwLDR----LTQSERNIKEQISvlkgsllLSRILYQQQQALPSADLIEGLADR-----------IADLRLeqfE 371
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1462 LDKERKELAQVKSVIEaqtKLsddLQRQKESAQ-QLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVD 1540
Cdd:PRK11281 372 INQQRDALFQPDAYID---KL---EAGHKSEVTdEVRDALLQLLDERRELLDQLNKQLNNQLNLAINLQLNQQQLLSVSD 445
|
....*...
gi 386764407 1541 NLKVELEK 1548
Cdd:PRK11281 446 SLQSTLTQ 453
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1229-1928 |
2.33e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.28 E-value: 2.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1229 KVELEKERKELA-----QVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKE 1303
Cdd:pfam15921 58 EVELDSPRKIIAypgkeHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRES 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1304 SAQQlvdNLKVELDKERKELaqvnsafEAQTKLSDDLQreKESAQQLVDNLKVELDKErKELAQVKSVIEAQTKLSDDLQ 1383
Cdd:pfam15921 138 QSQE---DLRNQLQNTVHEL-------EAAKCLKEDML--EDSNTQIEQLRKMMLSHE-GVLQEIRSILVDFEEASGKKI 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1384 RQKESAQQL--------VDNLKVELDKE-----------RKELAKVKSviEAQTKLSDDLQRQKESAQQLEAQ-----TK 1439
Cdd:pfam15921 205 YEHDSMSTMhfrslgsaISKILRELDTEisylkgrifpvEDQLEALKS--ESQNKIELLLQQHQDRIEQLISEheveiTG 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1440 LSDDLQRQKESAQQLVDNLKVELDKERKE----LAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVK 1515
Cdd:pfam15921 283 LTEKASSARSQANSIQSQLEIIQEQARNQnsmyMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEAR 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1516 SAIGAQTKLSDDLECQkesvqqlVDNLKVELEKERKELakvnSAFEAQTKlsddlKLQKEDAQREVFLVKERLVKEKREF 1595
Cdd:pfam15921 363 TERDQFSQESGNLDDQ-------LQKLLADLHKREKEL----SLEKEQNK-----RLWDRDTGNSITIDHLRRELDDRNM 426
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1596 EVKlaTLEDIIETLEMRCT-QMEEERATayeqinkLENRCQEKDNVKSSQLQVETFK------VECLHHQlKSEMATHNS 1668
Cdd:pfam15921 427 EVQ--RLEALLKAMKSECQgQMERQMAA-------IQGKNESLEKVSSLTAQLESTKemlrkvVEELTAK-KMTLESSER 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1669 LVEDLNRKLAEKV-------SKLDFVQSRLMTEIAEHNQVKDQLAQITDIpkvvelQHRLEAETAEREEAQNKLAVVTGR 1741
Cdd:pfam15921 497 TVSDLTASLQEKEraieatnAEITKLRSRVDLKLQELQHLKNEGDHLRNV------QTECEALKLQMAEKDKVIEILRQQ 570
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1742 LDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELiEFYRNRVEALERLLLA--SNQELEELNSIQSNqAEGVRDL 1819
Cdd:pfam15921 571 IENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEF-KILKDKKDAKIRELEArvSDLELEKVKLVNAG-SERLRAV 648
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1820 GDTYSAAEGRQTESDQDKERYQKLALDCKILQAKYRDAKDEIKRCEKKIKDQRLEMEGKLEKMKNKMRSLYTAEVTRMK- 1898
Cdd:pfam15921 649 KDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKv 728
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 386764407 1899 ----EKQ------ERDAAKSASELEALTAQNAKYEEHTRK 1928
Cdd:pfam15921 729 amgmQKQitakrgQIDALQSKIQFLEEAMTNANKEKHFLK 768
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1345-1555 |
2.35e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.46 E-value: 2.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1345 ESAQQLVDNLK------VELDKERKE---LAQVKSVIEAQTKLSDDLQRQKES--------AQQLVDNLKVELDKERKEL 1407
Cdd:COG4913 225 EAADALVEHFDdlerahEALEDAREQielLEPIRELAERYAAARERLAELEYLraalrlwfAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1408 AKVKsviEAQTKLSDDLQRQKESAQQLEAQtkLSDDLQRQKESAQQLVDNLKVELDK---ERKELAQVKSVIEAQTKLS- 1483
Cdd:COG4913 305 ARLE---AELERLEARLDALREELDELEAQ--IRGNGGDRLEQLEREIERLERELEErerRRARLEALLAALGLPLPASa 379
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 386764407 1484 DDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAK 1555
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAE 451
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1138-1954 |
2.46e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 56.21 E-value: 2.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1138 QQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDL---QRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDL 1214
Cdd:TIGR00606 192 RQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQItskEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEI 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1215 ECQKESGQQLvDNLKVELEKERKELAQvkSVIEAQTKLSDDLQRE-KESAQQLVDNLKV--ELDKERKELAQVNSAFEAQ 1291
Cdd:TIGR00606 272 KALKSRKKQM-EKDNSELELKMEKVFQ--GTDEQLNDLYHNHQRTvREKERELVDCQREleKLNKERRLLNQEKTELLVE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1292 TKlSDDLQRQKESAQQLVDNLKVELDKERKELaqvnSAFEAQTklsdDLQREKESAQQLV-DNLKVELDKERKELAQVKS 1370
Cdd:TIGR00606 349 QG-RLQLQADRHQEHIRARDSLIQSLATRLEL----DGFERGP----FSERQIKNFHTLViERQEDEAKTAAQLCADLQS 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1371 VIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDlqrqkes 1450
Cdd:TIGR00606 420 KERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEK------- 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1451 aQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLEC 1530
Cdd:TIGR00606 493 -NSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPN 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1531 QKEsVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERL--VKEKREFEVKLATLEDIIET 1608
Cdd:TIGR00606 572 KKQ-LEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdVCGSQDEESDLERLKEEIEK 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1609 LEMRCTQMEEERATAYEQINKLENRCQ------EKDNVKSSQLQVETFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVS 1682
Cdd:TIGR00606 651 SSKQRAMLAGATAVYSQFITQLTDENQsccpvcQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLG 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1683 KLDFVQSRLMTEIAEHNQVKDQLAQI-TDIPKV---VELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNA--RLEH 1756
Cdd:TIGR00606 731 LAPGRQSIIDLKEKEIPELRNKLQKVnRDIQRLkndIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVerKIAQ 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1757 GAQILRMEETAREVGNKNAELCELIEFYRNRVEALERLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEGRQTESDQD 1836
Cdd:TIGR00606 811 QAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQL 890
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1837 KERYQKL-ALDCKILQAKYRDAKDE-------------IKRCEKKIKDQRLEMEGKLEKMKNKMRSLYTAEvTRMKEKQE 1902
Cdd:TIGR00606 891 VELSTEVqSLIREIKDAKEQDSPLEtflekdqqekeelISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIE-NKIQDGKD 969
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|..
gi 386764407 1903 RDAAKSASELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHAIISTNL 1954
Cdd:TIGR00606 970 DYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNL 1021
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1346-1565 |
2.66e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 55.22 E-value: 2.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1346 SAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDD-- 1423
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEra 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1424 --LQRQKESAQQLEA---QTKLSDDLQRqkesaqqlvdnlkveldkerkeLAQVKSVIEAQTKLSDDLQRQKESaqqlVD 1498
Cdd:COG3883 93 raLYRSGGSVSYLDVllgSESFSDFLDR----------------------LSALSKIADADADLLEELKADKAE----LE 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 386764407 1499 NLKMELDKERKELAQVKSAIGAQTKlsdDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTK 1565
Cdd:COG3883 147 AKKAELEAKLAELEALKAELEAAKA---ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1066-1749 |
5.09e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 55.36 E-value: 5.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1066 LKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQNQSLTQLKEDALENCVLMSTKLEELQAKlqEGQQLVDSQK 1145
Cdd:TIGR00618 159 KAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEK--ELKHLREALQ 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1146 LELDMNRKELALVKSAYEAQtklsddlQRQKESGQQLVDnlKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQ--Q 1223
Cdd:TIGR00618 237 QTQQSHAYLTQKREAQEEQL-------KKQQLLKQLRAR--IEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQieQ 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1224 LVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLV---DNLKVELDKERKELAQVNSAFEAQTKLSDdLQR 1300
Cdd:TIGR00618 308 QAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHsqeIHIRDAHEVATSIREISCQQHTLTQHIHT-LQQ 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1301 QKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSD 1380
Cdd:TIGR00618 387 QKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQ 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1381 DLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQL---EAQTKLSDDLQRQKESAQQLVDN 1457
Cdd:TIGR00618 467 SLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIdnpGPLTRRMQRGEQTYAQLETSEED 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1458 LKVELDKERKEL----AQVKSVIEAQTKLSDDLQRQKESA---QQLVDNLKMELDKE-----------RKELAQVKSAIG 1519
Cdd:TIGR00618 547 VYHQLTSERKQRaslkEQMQEIQQSFSILTQCDNRSKEDIpnlQNITVRLQDLTEKLseaedmlaceqHALLRKLQPEQD 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1520 AQTKLSDDLECQKESVQQL--VDNLKVELEKERKELAKVNS-AFEAQTKLSDDLKLQKEDAQrevflvKERLVKEKREFE 1596
Cdd:TIGR00618 627 LQDVRLHLQQCSQELALKLtaLHALQLTLTQERVREHALSIrVLPKELLASRQLALQKMQSE------KEQLTYWKEMLA 700
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1597 VKLATLEDIIETLEMRCTQMEEERATAYEQINKLENR-------CQEKDNVKSSQLQVETFKVECLHHQLKSEMATHNSL 1669
Cdd:TIGR00618 701 QCQTLLRELETHIEEYDREFNEIENASSSLGSDLAARedalnqsLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAEL 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1670 vEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDIPKVVELQHRleaetaerEEAQNKLAVVTGRLDEITREL 1749
Cdd:TIGR00618 781 -SHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEE--------EQFLSRLEEKSATLGEITHQL 851
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1125-1349 |
5.74e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 54.07 E-value: 5.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1125 TKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAI 1204
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1205 GAQTKLSDDLEC--QKESGQQLVDNlkveLEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELA 1282
Cdd:COG3883 96 YRSGGSVSYLDVllGSESFSDFLDR----LSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 386764407 1283 QVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQ 1349
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1261-1805 |
6.11e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 6.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1261 ESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSD-- 1338
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEei 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1339 -DLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQ------QLVDNLKVELDKERKELAKVK 1411
Cdd:PRK03918 241 eELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEeyiklsEFYEEYLDELREIEKRLSRLE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1412 SVIEAQTKLSDDLQRQKESAQQLEAQTK-LSDDLQRQKESAQ--QLVDNLKVELDKERKELAQVKsvIEAQTKLSDDLQR 1488
Cdd:PRK03918 321 EEINGIEERIKELEEKEERLEELKKKLKeLEKRLEELEERHElyEEAKAKKEELERLKKRLTGLT--PEKLEKELEELEK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1489 QKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDL-----ECQKESVQQLVDNLKVELEKERKELAKVNSAFEaq 1563
Cdd:PRK03918 399 AKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgrELTEEHRKELLEEYTAELKRIEKELKEIEEKER-- 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1564 tklsddlKLQKEDAQREVFLVKERLVkekrefeVKLATLEDIIETLEMRCTQME-EERATAYEQINKLENRCQE-KDNVK 1641
Cdd:PRK03918 477 -------KLRKELRELEKVLKKESEL-------IKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKlKGEIK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1642 SSQLQVETFKveclhhQLKSEMATHNSLVEDLNRKLAE---KVSKLDFVQ-SRLMTEIAEHNQVKDQLAQITDIPKVVE- 1716
Cdd:PRK03918 543 SLKKELEKLE------ELKKKLAELEKKLDELEEELAEllkELEELGFESvEELEERLKELEPFYNEYLELKDAEKELEr 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1717 LQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGaqilrmEETAREVGNKNAELCELIEFYRNRVEALERLLL 1796
Cdd:PRK03918 617 EEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS------EEEYEELREEYLELSRELAGLRAELEELEKRRE 690
|
....*....
gi 386764407 1797 ASNQELEEL 1805
Cdd:PRK03918 691 EIKKTLEKL 699
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1291-1543 |
6.69e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 54.64 E-value: 6.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1291 QTKLSDDLQRQKES----AQQLVDNLKVEL------------DKERKELAQVNSAFeAQTKLSDDLQREKESAQQLVDNL 1354
Cdd:COG3206 102 KLNLDEDPLGEEASreaaIERLRKNLTVEPvkgsnvieisytSPDPELAAAVANAL-AEAYLEQNLELRREEARKALEFL 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1355 KVELDKERKELAQVKSVIEA--QTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAqtkLSDDLQRQKESAQ 1432
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAA---LRAQLGSGPDALP 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1433 QLEAQTKLSDDLQRQKESAQQLVDNLKVELDKE------RKELAQVKSVIEAQT-KLSDDLQRQKESAQQLVDNLKMELD 1505
Cdd:COG3206 258 ELLQSPVIQQLRAQLAELEAELAELSARYTPNHpdvialRAQIAALRAQLQQEAqRILASLEAELEALQAREASLQAQLA 337
|
250 260 270
....*....|....*....|....*....|....*...
gi 386764407 1506 KERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLK 1543
Cdd:COG3206 338 QLEARLAELPELEAELRRLEREVEVARELYESLLQRLE 375
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1387-1960 |
7.72e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 7.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1387 ESAQQLVDNLKvELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDL-----QRQKESAQQLVDNLKVE 1461
Cdd:COG4913 225 EAADALVEHFD-DLERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALrlwfaQRRLELLEAELEELRAE 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1462 LDKERKELAQVKSVIEAQTKLSDDLQRQKESAQ-QLVDNLKMELDKERKELAQVKSAIgaqtklsddlecqkESVQQLVD 1540
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRR--------------ARLEALLA 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1541 NLKVELEKERKELAKVNSAFEAqtkLSDDLKLQKEDAQREVFLVKERLVKEKREfevkLATLEDIIETLEMRCTQMEEER 1620
Cdd:COG4913 370 ALGLPLPASAEEFAALRAEAAA---LLEALEEELEALEEALAEAEAALRDLRRE----LRELEAEIASLERRKSNIPARL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1621 ATAYEQINK---------------LENRCQEKD------------------------------NVKSSQLQVETFKVECL 1655
Cdd:COG4913 443 LALRDALAEalgldeaelpfvgelIEVRPEEERwrgaiervlggfaltllvppehyaaalrwvNRLHLRGRLVYERVRTG 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1656 HHQLKSEMATHNSLVedlnRKLAEKVSKLdfvQSRLMTEIAEHNQVK-----DQLAQ----IT--------------DIP 1712
Cdd:COG4913 523 LPDPERPRLDPDSLA----GKLDFKPHPF---RAWLEAELGRRFDYVcvdspEELRRhpraITragqvkgngtrhekDDR 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1713 KVVELQH--------RLEAETAEREEAQNKLAVVTGRLDEITRELDNAR---------LEHGAQILRMEETAREVGNKNA 1775
Cdd:COG4913 596 RRIRSRYvlgfdnraKLAALEAELAELEEELAEAEERLEALEAELDALQerrealqrlAEYSWDEIDVASAEREIAELEA 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1776 ELCELIEFyRNRVEALERLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEGRQTESDQDKERYQKLALDCKI--LQAK 1853
Cdd:COG4913 676 ELERLDAS-SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRalLEER 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1854 YRDAKDeikrcEKKIKDQRLEMEGKLEKMKNKMRSLYTAEVTRMKEKQERDAAkSASELEALTAQNAKYEEHTRKLSNQ- 1932
Cdd:COG4913 755 FAAALG-----DAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPA-ETADLDADLESLPEYLALLDRLEEDg 828
|
650 660
....*....|....*....|....*...
gi 386764407 1933 IVRLNEKILEQQKQHAIisTNLRHLQMQ 1960
Cdd:COG4913 829 LPEYEERFKELLNENSI--EFVADLLSK 854
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1295-1811 |
9.59e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.26 E-value: 9.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1295 SDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVK---SV 1371
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLElllSN 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1372 IEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVI-EAQTKLSDDLQRQKESAQQLEAQTKlsddlqrQKES 1450
Cdd:TIGR04523 206 LKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEIsNTQTQLNQLKDEQNKIKKQLSEKQK-------ELEQ 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1451 AQQLVDNLKVELDKERKELAQVKSviEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLEC 1530
Cdd:TIGR04523 279 NNKKIKELEKQLNQLKSEISDLNN--QKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSES 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1531 QKESVQQlvdnlkvELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKerlvKEKREFEVKLATLEDIIETLE 1610
Cdd:TIGR04523 357 ENSEKQR-------ELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE----KLNQQKDEQIKKLQQEKELLE 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1611 MRCTQMEEERATAYEQINKLENrcqekdnvKSSQLQVETFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSR 1690
Cdd:TIGR04523 426 KEIERLKETIIKNNSEIKDLTN--------QDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE 497
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1691 LMTEIAEHNQVKDQLAQITDipKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQ-----ILRMEE 1765
Cdd:TIGR04523 498 LKKLNEEKKELEEKVKDLTK--KISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDeknkeIEELKQ 575
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1766 TAREVGNKNAELCEL--------------IEFYRNRVEALERLLLASNQELEELNSIQSN 1811
Cdd:TIGR04523 576 TQKSLKKKQEEKQELidqkekekkdlikeIEEKEKKISSLEKELEKAKKENEKLSSIIKN 635
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1112-1805 |
9.84e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.96 E-value: 9.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1112 LKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGqqlvdNLKVELE 1191
Cdd:pfam05483 65 LKDSDFENSEGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKV-----SLKLEEE 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1192 -KERKELAHVNSAIGAQTKL-----------SDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIE-AQTKLSDDLQR 1258
Cdd:pfam05483 140 iQENKDLIKENNATRHLCNLlketcarsaekTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAEnARLEMHFKLKE 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1259 EKESAQQLVDNLKVELDKERKE----LAQVNSAFEAQTKLSDDLQRQKESAQQL-------VDNLKVELDKER---KELA 1324
Cdd:pfam05483 220 DHEKIQHLEEEYKKEINDKEKQvsllLIQITEKENKMKDLTFLLEESRDKANQLeektklqDENLKELIEKKDhltKELE 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1325 QVNSAFE----AQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVEL 1400
Cdd:pfam05483 300 DIKMSLQrsmsTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQL 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1401 DKERKELAKVKSVIEAQTKLSDDLQRQKEsaqqlEAQTKLSDDLQRQKESAQqlVDNLKVELDKERKELAqvkSVIEAQT 1480
Cdd:pfam05483 380 KIITMELQKKSSELEEMTKFKNNKEVELE-----ELKKILAEDEKLLDEKKQ--FEKIAEELKGKEQELI---FLLQARE 449
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1481 KLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAF 1560
Cdd:pfam05483 450 KEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQE 529
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1561 EAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKdNV 1640
Cdd:pfam05483 530 ERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENK-NK 608
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1641 KSSQLQVETFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDIPKVVeLQHR 1720
Cdd:pfam05483 609 NIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAI-ADEA 687
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1721 LEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEFYRNRVEALERLLLASNQ 1800
Cdd:pfam05483 688 VKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKE 767
|
....*
gi 386764407 1801 ELEEL 1805
Cdd:pfam05483 768 EKEKL 772
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1315-1762 |
1.79e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.23 E-value: 1.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1315 ELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVksvieaqtklsdDLQRQKESAQQLVD 1394
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL------------PLYQELEALEAELA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1395 NLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSD-----DLQRQKESAQQLVDNLKVELDKERKEL 1469
Cdd:COG4717 143 ELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATeeelqDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1470 AQVKSVIEA--QTKLSDDLQRQKESAQQ----------LVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQ 1537
Cdd:COG4717 223 EELEEELEQleNELEAAALEERLKEARLllliaaallaLLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1538 LVDNLKVELEK---ERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREfeVKLATLEDIIETLEMRCT 1614
Cdd:COG4717 303 EAEELQALPALeelEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE--LQLEELEQEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1615 QMEEEraTAYEQINKLENRCQEKDNVKSSQLQVETFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDfvqsRLMTE 1694
Cdd:COG4717 381 VEDEE--ELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELE----ELREE 454
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 386764407 1695 IAEHNQvkdQLAQITDIPKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILR 1762
Cdd:COG4717 455 LAELEA---ELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPVLE 519
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1503-1862 |
1.82e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 1.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1503 ELDKERKELAQVKSAIgaqtklsddlecqkESVQQLVDNLKVELEKERKELAKVNSafeaqtklSDDLKLQKED-AQREV 1581
Cdd:TIGR02169 171 KKEKALEELEEVEENI--------------ERLDLIIDEKRQQLERLRREREKAER--------YQALLKEKREyEGYEL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1582 FLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETFKVECLHHQLKS 1661
Cdd:TIGR02169 229 LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLER 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1662 EMATHNSLVEDLNRKLAEKVSKLDFVQSR---LMTEIAEHNQVKDQLAQITDIPKVV--ELQHRLEAETAEREEAQNKLA 1736
Cdd:TIGR02169 309 SIAEKERELEDAEERLAKLEAEIDKLLAEieeLEREIEEERKRRDKLTEEYAELKEEleDLRAELEEVDKEFAETRDELK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1737 VVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIE---FYRNRVEALERLLLASNQELEELNSIQSNQA 1813
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAkinELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 386764407 1814 EGVRDLGDTYSAAEGRQTESDQDKERYQKLALDCKILQAKYRDAKDEIK 1862
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLK 517
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1022-1636 |
2.17e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 53.26 E-value: 2.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1022 SKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHL 1101
Cdd:pfam01576 15 QKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERSQQL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1102 ERNQNQSLTQLK---------EDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQ----TKL 1168
Cdd:pfam01576 95 QNEKKKMQQHIQdleeqldeeEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNlaeeEEK 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1169 SDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEA 1248
Cdd:pfam01576 175 AKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEE 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1249 QTKLSDDLQREKESAQQLVDNLKVELDKERKelaqvnsafeaqtklsddlqrQKESAQQLVDNLKVELDKERKELAQVNS 1328
Cdd:pfam01576 255 ETAQKNNALKKIRELEAQISELQEDLESERA---------------------ARNKAEKQRRDLGEELEALKTELEDTLD 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1329 AFEAQTKLSDdlQREKEsaqqlVDNLKVELDKE-RKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNL---KVELDKER 1404
Cdd:pfam01576 314 TTAAQQELRS--KREQE-----VTELKKALEEEtRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLekaKQALESEN 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1405 KELAKVKSVIeAQTKLSDDLQRQKESAQQLEAQTKLSDDlQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSD 1484
Cdd:pfam01576 387 AELQAELRTL-QQAKQDSEHKRKKLEGQLQELQARLSES-ERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVS 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1485 DLQRQKESAQQLvdnlkmeldkeRKELAQVKSAIGAQTKlsdDLECQKESVQQLVDnlkvELEKERKELAKVNSAFEAQt 1564
Cdd:pfam01576 465 SLESQLQDTQEL-----------LQEETRQKLNLSTRLR---QLEDERNSLQEQLE----EEEEAKRNVERQLSTLQAQ- 525
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 386764407 1565 kLSDDLKLQKEDAqrevfLVKERLVKEKREFEVKLATLediietlemrcTQMEEERATAYEQINKLENRCQE 1636
Cdd:pfam01576 526 -LSDMKKKLEEDA-----GTLEALEEGKKRLQRELEAL-----------TQQLEEKAAAYDKLEKTKNRLQQ 580
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1363-1900 |
2.21e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 2.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1363 KELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEaqtKLSDDLQRQKESAQQLEAQTKLSD 1442
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELP---ELREELEKLEKEVKELEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1443 DLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQ------QLVDNLKMELDKERKELAQVKS 1516
Cdd:PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEeyiklsEFYEEYLDELREIEKRLSRLEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1517 AIGAQTKLSDDLECQKESVQqlvdnlkvELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQ----REVFLVKERLVKEK 1592
Cdd:PRK03918 322 EINGIEERIKELEEKEERLE--------ELKKKLKELEKRLEELEERHELYEEAKAKKEELErlkkRLTGLTPEKLEKEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1593 REFEVKLATLEDIIETLEMRCTQME---EERATAYEQINKLENRC----------QEKDNVKSSQLQVEtfkveclhhQL 1659
Cdd:PRK03918 394 EELEKAKEEIEEEISKITARIGELKkeiKELKKAIEELKKAKGKCpvcgrelteeHRKELLEEYTAELK---------RI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1660 KSEMATHNSLVEDLnRKLAEKVSKLDFVQSRL--MTEIAEH-NQVKDQLAQI---------TDIPKVVELQHRLEAETAE 1727
Cdd:PRK03918 465 EKELKEIEEKERKL-RKELRELEKVLKKESELikLKELAEQlKELEEKLKKYnleelekkaEEYEKLKEKLIKLKGEIKS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1728 REEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETARE-VGNKNAELCELIEFYR----------------NRVEA 1790
Cdd:PRK03918 544 LKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFEsVEELEERLKELEPFYNeylelkdaekelereeKELKK 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1791 LERLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEGRQTESDQDKERYQKLALDCKILQAKYRdaKDEIKRCEKKIKD 1870
Cdd:PRK03918 624 LEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKR--REEIKKTLEKLKE 701
|
570 580 590
....*....|....*....|....*....|
gi 386764407 1871 QRLEMEGKLEKMKNKMRSLytAEVTRMKEK 1900
Cdd:PRK03918 702 ELEEREKAKKELEKLEKAL--ERVEELREK 729
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1447-1948 |
2.96e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.92 E-value: 2.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1447 QKESAQQLVDNLKVEL-DKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKS---AIGAQT 1522
Cdd:pfam12128 252 TLESAELRLSHLHFGYkSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSeleALEDQH 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1523 K--LSDDLECQKESVQQLvDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQ-KEDAQREVFLVKERLVKEKREFEVKL 1599
Cdd:pfam12128 332 GafLDADIETAAADQEQL-PSWQSELENLEERLKALTGKHQDVTAKYNRRRSKiKEQNNRDIAGIKDKLAKIREARDRQL 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1600 ATLEDIIETLEMRC-TQMEEERATAYEQINKLENRCQE-KDNVKSSQ------LQVETFKVECLHHQLKSEMATHNslVE 1671
Cdd:pfam12128 411 AVAEDDLQALESELrEQLEAGKLEFNEEEYRLKSRLGElKLRLNQATatpellLQLENFDERIERAREEQEAANAE--VE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1672 DLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITD--IPKVVELQHRLEAETAEREEAQNKL-------------- 1735
Cdd:pfam12128 489 RLQSELRQARKRRDQASEALRQASRRLEERQSALDELELqlFPQAGTLLHFLRKEAPDWEQSIGKVispellhrtdldpe 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1736 ---AVVTGRLDEITRELDNARLEHgAQILRMEETAREvgnKNAELCELIEFYRNRVEALERLLLASNQELEELnsiqsnq 1812
Cdd:pfam12128 569 vwdGSVGGELNLYGVKLDLKRIDV-PEWAASEEELRE---RLDKAEEALQSAREKQAAAEEQLVQANGELEKA------- 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1813 aegvrDLGDTYSAAEGRQTESDQDKERYQKLALDCKILQAkyrdakdeIKRCEKKIKDQRLEMEGKLEKMKNKMRSlyta 1892
Cdd:pfam12128 638 -----SREETFARTALKNARLDLRRLFDEKQSEKDKKNKA--------LAERKDSANERLNSLEAQLKQLDKKHQA---- 700
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 386764407 1893 evtrMKEKQERDAaksaseLEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHA 1948
Cdd:pfam12128 701 ----WLEEQKEQK------REARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAK 746
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1058-1287 |
3.78e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 3.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1058 ELKDLKNKLKSSDEKIAQIKETYEEQIKALQAkCDMEAKKNEHLERNQNQSLTQLKEDALENcvlmSTKLEELQAKLQEG 1137
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAA-LERRIAALARRIRALEQELAALEAELAEL----EKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1138 QQLVDSQKLELDMN--RKELALVKSAYEAQtklsdDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLE 1215
Cdd:COG4942 103 KEELAELLRALYRLgrQPPLALLLSPEDFL-----DAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 386764407 1216 CQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSA 1287
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFA 249
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
798-1429 |
4.97e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 51.65 E-value: 4.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 798 EKRFENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQNINGIIKRN---KFITSLEVNTEKVKQYITDLEEEAFKRKQK 874
Cdd:pfam05483 105 ENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNatrHLCNLLKETCARSAEKTKKYEYEREETRQV 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 875 VVQLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEAIRFINTIRDRLQQDFNgvNTPQQLGTCMTEFLKMYDQMEvryee 954
Cdd:pfam05483 185 YMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEIN--DKEKQVSLLLIQITEKENKMK----- 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 955 ssSLVEKLTESQAKLEMQVAELQVELEN-KDTNQHSGALIKQLNDTIQNLEK---VNAKLSEDNTVSHTVHSKLNESLlK 1030
Cdd:pfam05483 258 --DLTFLLEESRDKANQLEEKTKLQDENlKELIEKKDHLTKELEDIKMSLQRsmsTQKALEEDLQIATKTICQLTEEK-E 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1031 AQKELDLRAKIIENLEASErnLSMKLCELKDL----KNKLKSSDEKIAQIkeTYEEQIKALQAKCDMEAKKNEHLERNQN 1106
Cdd:pfam05483 335 AQMEELNKAKAAHSFVVTE--FEATTCSLEELlrteQQRLEKNEDQLKII--TMELQKKSSELEEMTKFKNNKEVELEEL 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1107 QSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTK----LSDDLQRQKESGQQL 1182
Cdd:pfam05483 411 KKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKevedLKTELEKEKLKNIEL 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1183 VDNLKVELEKERK----------ELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKL 1252
Cdd:pfam05483 491 TAHCDKLLLENKEltqeasdmtlELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDK 570
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1253 SDDLQREKESA-----------QQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERK 1321
Cdd:pfam05483 571 SEENARSIEYEvlkkekqmkilENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQ 650
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1322 ELAQVNSAFEAQTKL----SDDLQREKESAQQLVD---NLKVELDKE-RKELAQVKSVIEAQTKLSDDLQRQKESAQQLV 1393
Cdd:pfam05483 651 KFEEIIDNYQKEIEDkkisEEKLLEEVEKAKAIADeavKLQKEIDKRcQHKIAEMVALMEKHKHQYDKIIEERDSELGLY 730
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 386764407 1394 DN-----------LKVELDKERKELAKVKSVIEAQTKLSDDLQRQKE 1429
Cdd:pfam05483 731 KNkeqeqssakaaLEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAK 777
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1261-1479 |
4.99e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 4.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1261 ESAQQLVDNLK------VELDKERKE---LAQVNSAFEAQTKLSDDLQRQKES--------AQQLVDNLKVELDKERKEL 1323
Cdd:COG4913 225 EAADALVEHFDdlerahEALEDAREQielLEPIRELAERYAAARERLAELEYLraalrlwfAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1324 AQVNSAFEAQTKLSDDLQREKESAQQL--------VDNLKVELDKERKELAQVksvieaqtklsddlQRQKESAQQLVDN 1395
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEAQirgnggdrLEQLEREIERLERELEER--------------ERRRARLEALLAA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1396 LKVELDKERKELAKVKSVIEAqtkLSDDLQRQKESAQQleAQTKLSDDLQRQKESAQqlvdnlkvELDKERKELAQVKSV 1475
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAA---LLEALEEELEALEE--ALAEAEAALRDLRRELR--------ELEAEIASLERRKSN 437
|
....
gi 386764407 1476 IEAQ 1479
Cdd:COG4913 438 IPAR 441
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1273-1636 |
5.44e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 5.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1273 ELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELaQVNSAFEAQTKLSDDLQREKESAQQLVD 1352
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL-QLLPLYQELEALEAELAELPERLEELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1353 NLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQ 1432
Cdd:COG4717 154 RLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLE 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1433 QLEAQTKLSDDLQRQKESAQQ------LVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDK 1506
Cdd:COG4717 234 NELEAAALEERLKEARLLLLIaaallaLLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPAL 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1507 ---ERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELaKVNSAFEAQTKLSDDLKLQKEDAQREVFL 1583
Cdd:COG4717 314 eelEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL-QLEELEQEIAALLAEAGVEDEEELRAALE 392
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 386764407 1584 VKERLVKEKREFEVKLATLEDIIETLEMRC-----TQMEEERATAYEQINKLENRCQE 1636
Cdd:COG4717 393 QAEEYQELKEELEELEEQLEELLGELEELLealdeEELEEELEELEEELEELEEELEE 450
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
929-1685 |
5.75e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.98 E-value: 5.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 929 NTPQQLGTCMTEFLKMY-DQMEVRYEESSSLVEKL----TESQAKLEmqvaelqvELENKDTNQHsgalikqlnDTIQNL 1003
Cdd:TIGR01612 653 NKDKIYSTIKSELSKIYeDDIDALYNELSSIVKENaidnTEDKAKLD--------DLKSKIDKEY---------DKIQNM 715
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1004 EKVNAKLSEDNTvsHTVHSKLNESLLKAQKEL------DLRaKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIK 1077
Cdd:TIGR01612 716 ETATVELHLSNI--ENKKNELLDIIVEIKKHIhgeinkDLN-KILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIK 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1078 ETYEEQIKALQAKcDMEAKKNEHLERNQNQSLTqLKEDALENCV-LMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELA 1156
Cdd:TIGR01612 793 NHYNDQINIDNIK-DEDAKQNYDKSKEYIKTIS-IKEDEIFKIInEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFA 870
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1157 LVKSAYEAQT---KLSDDLQRQKESgQQLVDNLKVELEKERKE---LAHVNSAIGAQTKLSDDLEC----QKESGQQLVD 1226
Cdd:TIGR01612 871 ELTNKIKAEIsddKLNDYEKKFNDS-KSLINEINKSIEEEYQNintLKKVDEYIKICENTKESIEKfhnkQNILKEILNK 949
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1227 NLKV-----ELEKERKE------LAQVKSVIEAQTKLS-DDLQREKESAQQLVDNLKVELDKERKELaqVNSAFEAQTKL 1294
Cdd:TIGR01612 950 NIDTikesnLIEKSYKDkfdntlIDKINELDKAFKDASlNDYEAKNNELIKYFNDLKANLGKNKENM--LYHQFDEKEKA 1027
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1295 SDDLQRQKESAQQLVDNLkveldkerkELAQVNSAFEAQTKLSDDLQREKESAQQLV---DNLKVELDKERKELAQVKS- 1370
Cdd:TIGR01612 1028 TNDIEQKIEDANKNIPNI---------EIAIHTSIYNIIDEIEKEIGKNIELLNKEIleeAEINITNFNEIKEKLKHYNf 1098
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1371 ---VIEAQTKLSDDLQRQKESaqqlVDNLKVELDKERKELAKVKSVIEaqtKLSDDLQRQKESAQQLEAQTKLSDDLQRQ 1447
Cdd:TIGR01612 1099 ddfGKEENIKYADEINKIKDD----IKNLDQKIDHHIKALEEIKKKSE---NYIDEIKAQINDLEDVADKAISNDDPEEI 1171
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1448 KESAQQLV---DNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKelaQVKSAIGAQTKL 1524
Cdd:TIGR01612 1172 EKKIENIVtkiDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKK---KSEHMIKAMEAY 1248
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1525 SDDLECQKESVQQLVDNLKVELE--KERKELAKVNSAFEAQTKLSddlklQKEDaqREVFLVKERLVKEKREFEVKlATL 1602
Cdd:TIGR01612 1249 IEDLDEIKEKSPEIENEMGIEMDikAEMETFNISHDDDKDHHIIS-----KKHD--ENISDIREKSLKIIEDFSEE-SDI 1320
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1603 EDIIETLEMRCTQMEEERATAYEQINKLEN--RCQEKDNVKS--SQLQVETFKVECLHHQLKSEMATHNSLVEDL--NRK 1676
Cdd:TIGR01612 1321 NDIKKELQKNLLDAQKHNSDINLYLNEIANiyNILKLNKIKKiiDEVKEYTKEIEENNKNIKDELDKSEKLIKKIkdDIN 1400
|
....*....
gi 386764407 1677 LAEKVSKLD 1685
Cdd:TIGR01612 1401 LEECKSKIE 1409
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1419-1633 |
8.42e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 8.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1419 KLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDnLKVELDKERKELAQVKSVIEAQTklSDDLQRQKESAQQLVD 1498
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEALEDAREQIELLEPIRE-LAERYAAARERLAELEYLRAALR--LWFAQRRLELLEAELE 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1499 NLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQ-QLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDA 1577
Cdd:COG4913 299 ELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPAS 378
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 386764407 1578 QREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENR 1633
Cdd:COG4913 379 AEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
1259-1549 |
8.51e-06 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 49.92 E-value: 8.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1259 EKESAQQLVDNLKVELDKERkELAQVNSAFEAQTKLS-------------------DDLQRQKESAQQLVDNLKVELDKE 1319
Cdd:pfam00038 2 EKEQLQELNDRLASYIDKVR-FLEQQNKLLETKISELrqkkgaepsrlyslyekeiEDLRRQLDTLTVERARLQLELDNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1320 RKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNL---KVELDKE----RKELAQVKSVIEAQTKlsdDLQRQKESAQQL 1392
Cdd:pfam00038 81 RLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEAtlaRVDLEAKieslKEELAFLKKNHEEEVR---ELQAQVSDTQVN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1393 V---DNLKVELDkerKELAKVKSVIEAQTKLSddlqrQKESAQQLEAQTklsDDLQRQKESAQQLVDNLKVELDKERKEL 1469
Cdd:pfam00038 158 VemdAARKLDLT---SALAEIRAQYEEIAAKN-----REEAEEWYQSKL---EELQQAAARNGDALRSAKEEITELRRTI 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1470 AQVKSVIEAQTKLSDDLQRQKESAQqlvDNLKMELDKERKELAQVKSAIgaqTKLSDDLECQKESVQQLVdNLKVELEKE 1549
Cdd:pfam00038 227 QSLEIELQSLKKQKASLERQLAETE---ERYELQLADYQELISELEAEL---QETRQEMARQLREYQELL-NVKLALDIE 299
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1103-1307 |
1.22e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.83 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1103 RNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAY-EAQTKLSDDLQRQKESGQQ 1181
Cdd:COG3883 22 QKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIeERREELGERARALYRSGGS 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1182 lVDNLKVELEKE------------RKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQ 1249
Cdd:COG3883 102 -VSYLDVLLGSEsfsdfldrlsalSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQ 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 386764407 1250 TKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQ 1307
Cdd:COG3883 181 EALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
1145-1518 |
1.71e-05 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 50.03 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1145 KLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHV--------------------NSAI 1204
Cdd:pfam05701 41 ELELEKVQEEIPEYKKQSEAAEAAKAQVLEELESTKRLIEELKLNLERAQTEEAQAkqdselaklrveemeqgiadEASV 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1205 GAQTKlsddLECQKESGQQLVDNL---KVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKEL 1281
Cdd:pfam05701 121 AAKAQ----LEVAKARHAAAVAELksvKEELESLRKEYASLVSERDIAIKRAEEAVSASKEIEKTVEELTIELIATKESL 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1282 AQVNSA-FEAQT-KLSDDLQRQKESAqqlvdNLKVELDKERKELAQVNSafeaQTKLSDDLQREKESAQQLVDNLKVEL- 1358
Cdd:pfam05701 197 ESAHAAhLEAEEhRIGAALAREQDKL-----NWEKELKQAEEELQRLNQ----QLLSAKDLKSKLETASALLLDLKAELa 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1359 DKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKElakVKSVIEAQTKLSDDLQRQKESAqqleaqt 1438
Cdd:pfam05701 268 AYMESKLKEEADGEGNEKKTSTSIQAALASAKKELEEVKANIEKAKDE---VNCLRVAAASLRSELEKEKAEL------- 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1439 klsDDLQRQKESAQQLVDNLKVELDKERKELAQV----KSVIEAQTKLSDDLQ---RQKESAQQLVDNLKMELDKERKEL 1511
Cdd:pfam05701 338 ---ASLRQREGMASIAVSSLEAELNRTKSEIALVqakeKEAREKMVELPKQLQqaaQEAEEAKSLAQAAREELRKAKEEA 414
|
....*..
gi 386764407 1512 AQVKSAI 1518
Cdd:pfam05701 415 EQAKAAA 421
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1175-1509 |
1.82e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 50.08 E-value: 1.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1175 QKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKES----GQQLVDNLK---VELEKERKELAQVKSVIE 1247
Cdd:COG5022 823 QKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETiylqSAQRVELAErqlQELKIDVKSISSLKLVNL 902
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1248 AQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQvnsafEAQTKLSDDLQRQKESAQQlvdnlkvELDKERKELAQVN 1327
Cdd:COG5022 903 ELESEIIELKKSLSSDLIENLEFKTELIARLKKLLN-----NIDLEEGPSIEYVKLPELN-------KLHEVESKLKETS 970
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1328 SAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKElaqvKSVIEAQTKLSDDLQRQKESAQQLVDNLKVElDKERKEL 1407
Cdd:COG5022 971 EEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQ----YGALQESTKQLKELPVEVAELQSASKIISSE-STELSIL 1045
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1408 AKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKE----LAQVKSVIEAQTKLS 1483
Cdd:COG5022 1046 KPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRnlvkPANVLQFIVAQMIKL 1125
|
330 340
....*....|....*....|....*.
gi 386764407 1484 DDLQRQKESAQQLVDNLKMELDKERK 1509
Cdd:COG5022 1126 NLLQEISKFLSQLVNTLEPVFQKLSV 1151
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
965-1360 |
2.06e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 49.91 E-value: 2.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 965 SQAKLEMQVAELQvelENKDTNQHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHTVhSKLNESLLKAQKELD-LRAKIIE 1043
Cdd:PRK11281 37 TEADVQAQLDALN---KQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQL-AQAPAKLRQAQAELEaLKDDNDE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1044 NLEASERNLSmklceLKDLKNKLKSSDEKIAQIKE---TYEEQIKALQAKcdmeakknehLERNQNQ---SLTQLKEdal 1117
Cdd:PRK11281 113 ETRETLSTLS-----LRQLESRLAQTLDQLQNAQNdlaEYNSQLVSLQTQ----------PERAQAAlyaNSQRLQQ--- 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1118 ENCVLMSTKLE------ELQAKLQEGQQLVDSQkleLDMNRKELA-------LVKSAYEAQTKLSDDLQRQKESGQQLVD 1184
Cdd:PRK11281 175 IRNLLKGGKVGgkalrpSQRVLLQAEQALLNAQ---NDLQRKSLEgntqlqdLLQKQRDYLTARIQRLEHQLQLLQEAIN 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1185 NLKVEL-EKERKELAHVNSAIGAQT------------KLSDDLECQKESGQQLV-DNLKVELEKERkeLAQVKSVIEAQT 1250
Cdd:PRK11281 252 SKRLTLsEKTVQEAQSQDEAARIQAnplvaqeleinlQLSQRLLKATEKLNTLTqQNLRVKNWLDR--LTQSERNIKEQI 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1251 K-------LSDDLQREKES----------AQQLVDnLKV---ELDKERKELAQVNSAFEaqtKLsddLQRQKESAQ-QLV 1309
Cdd:PRK11281 330 SvlkgsllLSRILYQQQQAlpsadlieglADRIAD-LRLeqfEINQQRDALFQPDAYID---KL---EAGHKSEVTdEVR 402
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 386764407 1310 DNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDK 1360
Cdd:PRK11281 403 DALLQLLDERRELLDQLNKQLNNQLNLAINLQLNQQQLLSVSDSLQSTLTQ 453
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
942-1470 |
2.25e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.68 E-value: 2.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 942 LKMYDQMEVRYEESSSLVEKLTESQAKLEMQVAELQVELENKDTNqhsgalIKQLNDTIQNLEKVNAKLSEdntvshtvH 1021
Cdd:PRK03918 230 VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE------IEELEEKVKELKELKEKAEE--------Y 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1022 SKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNehl 1101
Cdd:PRK03918 296 IKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKE--- 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1102 erNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELAlvksayEAQTKLSDDLQRQKESGQQ 1181
Cdd:PRK03918 373 --ELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELK------KAIEELKKAKGKCPVCGRE 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1182 LVDNLKVEL-EKERKELAHVNSAIGAQTKLSDDLECQKEsgqqlvdNLKVELEKERKELAQ---VKSVIEAQTKLSDDLQ 1257
Cdd:PRK03918 445 LTEEHRKELlEEYTAELKRIEKELKEIEEKERKLRKELR-------ELEKVLKKESELIKLkelAEQLKELEEKLKKYNL 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1258 REKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKL---SDDLQRQKESAQQLVDNLKVELDKE--------RKELAQV 1326
Cdd:PRK03918 518 EELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELkkkLAELEKKLDELEEELAELLKELEELgfesveelEERLKEL 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1327 NSAFEAQTKLSDdLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQ-KESAQQLVDNLKVELDKE-- 1403
Cdd:PRK03918 598 EPFYNEYLELKD-AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKySEEEYEELREEYLELSREla 676
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 386764407 1404 --RKELAKVKSVIEAQTKLSDDLQRQKES----AQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELA 1470
Cdd:PRK03918 677 glRAELEELEKRREEIKKTLEKLKEELEErekaKKELEKLEKALERVEELREKVKKYKALLKERALSKVGEIA 749
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1255-1409 |
2.69e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.61 E-value: 2.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1255 DLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSA--FEA 1332
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNkeYEA 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 386764407 1333 QTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAK 1409
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAA 170
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1168-1396 |
3.89e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.86 E-value: 3.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1168 LSDDLQRQKESGQQLVDNLKVELEKERKELAhvnsaiGAQTKLSD--------DLECQKESGQQLVDNLKVELEKERKEL 1239
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELE------EAEAALEEfrqknglvDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1240 AQVKSVIEAqtkLSDDLQREKESAQQLVDNlkVELDKERKELAQvnsafeAQTKLSDDLQRQKESAQQLVdNLKVELDKE 1319
Cdd:COG3206 236 AEAEARLAA---LRAQLGSGPDALPELLQS--PVIQQLRAQLAE------LEAELAELSARYTPNHPDVI-ALRAQIAAL 303
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 386764407 1320 RKELAQvnsafEAQtKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKsviEAQTKLSdDLQRQKESAQQLVDNL 1396
Cdd:COG3206 304 RAQLQQ-----EAQ-RILASLEAELEALQAREASLQAQLAQLEARLAELP---ELEAELR-RLEREVEVARELYESL 370
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1127-1471 |
3.99e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 49.19 E-value: 3.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1127 LEELQAKLQEGQQLVDSQKLELDMNRkelalvksayeaqtklsddlqRQKESGQQLVDNLKvelekerKELAHVNSAIGA 1206
Cdd:PRK04863 357 LEELEERLEEQNEVVEEADEQQEENE---------------------ARAEAAEEEVDELK-------SQLADYQQALDV 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1207 QtklsddlecQKESGQ-----QLVDNLKVELEKERKELAQVKSVIEAqtklsddLQREKESAQQLVDNLKVELDKERKEL 1281
Cdd:PRK04863 409 Q---------QTRAIQyqqavQALERAKQLCGLPDLTADNAEDWLEE-------FQAKEQEATEELLSLEQKLSVAQAAH 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1282 AQVNSAFEAQTKLSDDLQRqkESAQQLVDNLKVELDKERKELAQVNSafeAQTKLSDDLQR--EKESAQQLVDNLKVELD 1359
Cdd:PRK04863 473 SQFEQAYQLVRKIAGEVSR--SEAWDVARELLRRLREQRHLAEQLQQ---LRMRLSELEQRlrQQQRAERLLAEFCKRLG 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1360 KERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLK---VELDKERKELAKVKSV-IEAQ---TKLSDDLQRQKESAQ 1432
Cdd:PRK04863 548 KNLDDEDELEQLQEELEARLESLSESVSEARERRMALRqqlEQLQARIQRLAARAPAwLAAQdalARLREQSGEEFEDSQ 627
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 386764407 1433 QLEAQTKlsdDLQRQKESAQQLVDNL---KVELDKERKELAQ 1471
Cdd:PRK04863 628 DVTEYMQ---QLLERERELTVERDELaarKQALDEEIERLSQ 666
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
947-1900 |
4.17e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.02 E-value: 4.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 947 QMEVRYEESSSLVEKLTESQAKLEMQVAELQVELENKDTNQH--------SGALIKQLNDTIQNLEKVNAKLSEDNTVSH 1018
Cdd:pfam01576 79 ELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQklqlekvtTEAKIKKLEEDILLLEDQNSKLSKERKLLE 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1019 TVHSKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKN 1098
Cdd:pfam01576 159 ERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQL 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1099 EHLERNQNQSLTQLKEDALENCVLMStKLEELQAKLQEGQQLVDSQKleldmnrkelALVKSAYEAQTKLSDDLQRQKES 1178
Cdd:pfam01576 239 AKKEEELQAALARLEEETAQKNNALK-KIRELEAQISELQEDLESER----------AARNKAEKQRRDLGEELEALKTE 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1179 GQQLVDNLKVELE---KERKELAHVNSAIGAQTKLSD-DLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSD 1254
Cdd:pfam01576 308 LEDTLDTTAAQQElrsKREQEVTELKKALEEETRSHEaQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENA 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1255 DLQREKESAQQLvdnlKVELDKERKEL-AQVNsafEAQTKLSDDlQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQ 1333
Cdd:pfam01576 388 ELQAELRTLQQA----KQDSEHKRKKLeGQLQ---ELQARLSES-ERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKL 459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1334 TKLSDDLQREKESAQQLvdnLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQL---VDNLKVELDKERKELAKV 1410
Cdd:pfam01576 460 SKDVSSLESQLQDTQEL---LQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVerqLSTLQAQLSDMKKKLEED 536
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1411 KSVIEAQTKLSDDLQRQKESA-QQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKER--------------KELAQVKSV 1475
Cdd:pfam01576 537 AGTLEALEEGKKRLQRELEALtQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRqlvsnlekkqkkfdQMLAEEKAI 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1476 ----------IEAQTKLSD----DLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDN 1541
Cdd:pfam01576 617 saryaeerdrAEAEAREKEtralSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEE 696
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1542 LKVELEKERKELAKVNSAfeaqtKLSDDLKLQKEDAQREVFLV---------KERLVKEKREFEVKL------------- 1599
Cdd:pfam01576 697 MKTQLEELEDELQATEDA-----KLRLEVNMQALKAQFERDLQardeqgeekRRQLVKQVRELEAELederkqraqavaa 771
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1600 -ATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQ----EKDNVKSSQLQVETFKVEClHHQLKSEMATHNSLVEDL- 1673
Cdd:pfam01576 772 kKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKdlqrELEEARASRDEILAQSKES-EKKLKNLEAELLQLQEDLa 850
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1674 --NRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDipKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDN 1751
Cdd:pfam01576 851 asERARRQAQQERDELADEIASGASGKSALQDEKRRLEA--RIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAA 928
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1752 AR-----LEHGAQilRMEETAREVGNKNAELCELIEF-YRNRVEALERLLLASNQELEELNSIQSNQAEGVR----DLGD 1821
Cdd:pfam01576 929 ERstsqkSESARQ--QLERQNKELKAKLQEMEGTVKSkFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRrtekKLKE 1006
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 386764407 1822 TYSAAEGRQTESDQDKERYQKLALDCKILQAKYRDAKDEIKRcekkIKDQRLEMEGKLEKMKNKMRSLyTAEVTRMKEK 1900
Cdd:pfam01576 1007 VLLQVEDERRHADQYKDQAEKGNSRMKQLKRQLEEAEEEASR----ANAARRKLQRELDDATESNESM-NREVSTLKSK 1080
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
1237-1465 |
4.33e-05 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 47.99 E-value: 4.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1237 KELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSD-------DLQRQKESAQQLV 1309
Cdd:pfam00038 54 KEIEDLRRQLDTLTVERARLQLELDNLRLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDeatlarvDLEAKIESLKEEL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1310 DNLKVELDKERKELAQVNSafEAQTKLSDDLQREKESAQQLVD---NLKVELDKERKEL-----AQVKSVIEAQTKLSDD 1381
Cdd:pfam00038 134 AFLKKNHEEEVRELQAQVS--DTQVNVEMDAARKLDLTSALAEiraQYEEIAAKNREEAeewyqSKLEELQQAAARNGDA 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1382 LQRQKESAQQL---VDNLKVELDKERKELAKV-KSVIEAQTKLSDDLQRQKESAQQLEAQ-TKLSDDLQRQKESAQQLVd 1456
Cdd:pfam00038 212 LRSAKEEITELrrtIQSLEIELQSLKKQKASLeRQLAETEERYELQLADYQELISELEAElQETRQEMARQLREYQELL- 290
|
....*....
gi 386764407 1457 NLKVELDKE 1465
Cdd:pfam00038 291 NVKLALDIE 299
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1123-1960 |
4.77e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 48.63 E-value: 4.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1123 MSTKLEELQaKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELahvNS 1202
Cdd:pfam01576 7 MQAKEEELQ-KVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHEL---ES 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1203 AIGAQTKLSDDLECQKESGQQLVDNLKVELEKE---RKELAQVKSVIEAQTKlsddlqrEKESAQQLVDNLKVELDKERK 1279
Cdd:pfam01576 83 RLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEeaaRQKLQLEKVTTEAKIK-------KLEEDILLLEDQNSKLSKERK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1280 ELAQVNSAFEAQ----TKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLK 1355
Cdd:pfam01576 156 LLEERISEFTSNlaeeEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELR 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1356 VELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKsvieaqtklsddlQRQKESAQQLE 1435
Cdd:pfam01576 236 AQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAE-------------KQRRDLGEELE 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1436 A-QTKLSDDL------QRQKESAQQLVDNLKVELDKE-RKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNL---KMEL 1504
Cdd:pfam01576 303 AlKTELEDTLdttaaqQELRSKREQEVTELKKALEEEtRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLekaKQAL 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1505 DKERKEL-AQVKSAIGAQTklsdDLECQKESVQQLVDNLKV---ELEKERKELA----KVNSAFEAQTKL-----SDDLK 1571
Cdd:pfam01576 383 ESENAELqAELRTLQQAKQ----DSEHKRKKLEGQLQELQArlsESERQRAELAeklsKLQSELESVSSLlneaeGKNIK 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1572 LQKEDAQREVFL--VKERLVKEKREfevKLAtlediietLEMRCTQMEEERATAYEQinkLENRCQEKDNVkSSQLQVET 1649
Cdd:pfam01576 459 LSKDVSSLESQLqdTQELLQEETRQ---KLN--------LSTRLRQLEDERNSLQEQ---LEEEEEAKRNV-ERQLSTLQ 523
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1650 FKVECLHHQLKSEMATHNSL----------VEDLNRKLAEKVS---KLDFVQSRLMTEIAEHNQVKDQLAQItdIPKVVE 1716
Cdd:pfam01576 524 AQLSDMKKKLEEDAGTLEALeegkkrlqreLEALTQQLEEKAAaydKLEKTKNRLQQELDDLLVDLDHQRQL--VSNLEK 601
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1717 LQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKN----AELCELIEFYRN---RVE 1789
Cdd:pfam01576 602 KQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELERTNkqlrAEMEDLVSSKDDvgkNVH 681
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1790 ALERLLLASNQELEELNS----------------------IQSNQAEGVRDLGDTYSAAEG---------RQTESDQDKE 1838
Cdd:pfam01576 682 ELERSKRALEQQVEEMKTqleeledelqatedaklrlevnMQALKAQFERDLQARDEQGEEkrrqlvkqvRELEAELEDE 761
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1839 RYQ---------KLALDCKILQAKYRDAK------------------------DEIKRCEKKIKDQRLEMEGKLEKMKNK 1885
Cdd:pfam01576 762 RKQraqavaakkKLELDLKELEAQIDAANkgreeavkqlkklqaqmkdlqrelEEARASRDEILAQSKESEKKLKNLEAE 841
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 386764407 1886 M----RSLYTAEVTRMKEKQERDaaKSASELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHAIISTNLRHLQMQ 1960
Cdd:pfam01576 842 LlqlqEDLAASERARRQAQQERD--ELADEIASGASGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQ 918
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1433-1631 |
4.86e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.90 E-value: 4.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1433 QLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELA 1512
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1513 QVKSAIGA------QTKLSDDLEcQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREvflvKE 1586
Cdd:COG3883 97 RSGGSVSYldvllgSESFSDFLD-RLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA----KA 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 386764407 1587 RLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLE 1631
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
1223-1335 |
6.07e-05 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 47.41 E-value: 6.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1223 QLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQvnsafeAQTKLSDDLQRQK 1302
Cdd:TIGR04320 247 TPIPNPPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELAN------AQAQALQTAQNNL 320
|
90 100 110
....*....|....*....|....*....|...
gi 386764407 1303 ESAQQLVDNLKVELDKERKELAQVNSAFEAQTK 1335
Cdd:TIGR04320 321 ATAQAALANAEARLAKAKEALANLNADLAKKQA 353
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
1248-1498 |
7.07e-05 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 48.06 E-value: 7.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1248 AQTKLSDDLQR--EKESAQQLVDNLKVELDKERKELAQvnsafEAQTKLSDDLQRQKESAQQLV-DNLKVELDkERKELA 1324
Cdd:pfam13779 494 AQERLSEALERgaSDEEIAKLMQELREALDDYMQALAE-----QAQQNPQDLQQPDDPNAQEMTqQDLQRMLD-RIEELA 567
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1325 QVNSAFEAQTKLSDdlqrekesAQQLVDNLKV------------ELDKERKELAQvksVIEAQTKLSDDLQRQKESA--- 1389
Cdd:pfam13779 568 RSGRRAEAQQMLSQ--------LQQMLENLQAgqpqqqqqqgqsEMQQAMDELGD---LLREQQQLLDETFRQLQQQggq 636
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1390 ------QQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEaqtKLSDDL--QRQKESAQQLVDNLKvE 1461
Cdd:pfam13779 637 qqgqpgQQGQQGQGQQPGQGGQQPGAQMPPQGGAEALGDLAERQQALRRRLE---ELQDELkeLGGKEPGQALGDAGR-A 712
|
250 260 270
....*....|....*....|....*....|....*....
gi 386764407 1462 LDKERKELAQ--VKSVIEAQTKLSDDLQrqkESAQQLVD 1498
Cdd:pfam13779 713 MRDAEEALGQgdLAGAVDAQGRALEALR---KGAQQLAE 748
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1299-1612 |
8.02e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.03 E-value: 8.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1299 QRQKESAQQLVDNLKVELDkerkELAQVNSAFEAQTKLSDD---LQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQ 1375
Cdd:PRK04863 299 RRQLAAEQYRLVEMARELA----ELNEAESDLEQDYQAASDhlnLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEA 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1376 TKLSDDLQRQKESAQQLVDNLKVELD-------------------KERKELAK---------VKSVIEAQTKLSDDLQRQ 1427
Cdd:PRK04863 375 DEQQEENEARAEAAEEEVDELKSQLAdyqqaldvqqtraiqyqqaVQALERAKqlcglpdltADNAEDWLEEFQAKEQEA 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1428 KESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKE-------------RKELAQVKSVIEAQTKLSDDLQR--QKES 1492
Cdd:PRK04863 455 TEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSeawdvarellrrlREQRHLAEQLQQLRMRLSELEQRlrQQQR 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1493 AQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEK---ERKELAKVN----SAFEAQTK 1565
Cdd:PRK04863 535 AERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQlqaRIQRLAARApawlAAQDALAR 614
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 386764407 1566 LSDDLKLQKEDAQREVFLVKERLVKEkREFEVKLATLEDIIETLEMR 1612
Cdd:PRK04863 615 LREQSGEEFEDSQDVTEYMQQLLERE-RELTVERDELAARKQALDEE 660
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
553-770 |
1.04e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 553 RECETILSCCHMKVVDIASKNNDLELDNERLNDKCAELKSIIDRGDQHLADINLQLIEKEKQIKDVGAEIQELRKRNINL 632
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL 894
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 633 ENMLSQIADKEASAASHAQHLKQCGELLRAKYEVCRNEL--IAKNAAQDELVRMMMVPDGETLNGRVRQLIDLEMMHDEH 710
Cdd:TIGR02169 895 EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELseIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVN 974
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 386764407 711 NKM---YAQMLKQLNELSAKHDNMTHSHLDFVKRTE-IELETKNAQIMAFDEHNNHFDRFLTRI 770
Cdd:TIGR02169 975 MLAiqeYEEVLKRLDELKEKRAKLEEERKAILERIEeYEKKKREVFMEAFEAINENFNEIFAEL 1038
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1358-1885 |
1.07e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.34 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1358 LDKERKELAQVKSVIEAqtKLSDDLQRQKESAQQLVDNLKVELDK--ERKELAKvksviEAQTKLSDDLQRQKESAQQLE 1435
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIERyeEQREQAR-----ETRDEADEVLEEHEERREELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1436 AQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVK 1515
Cdd:PRK02224 255 TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1516 SAIGAQTKLS-------DDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAqrevflvkerl 1588
Cdd:PRK02224 335 VAAQAHNEEAeslredaDDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDA----------- 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1589 vkekrefEVKLATLEDIIETLEmrctqmeEERATAYEQINKLENRCQEKDNV--KSSQLQVETFKVECLHhqlKSEMATH 1666
Cdd:PRK02224 404 -------PVDLGNAEDFLEELR-------EERDELREREAELEATLRTARERveEAEALLEAGKCPECGQ---PVEGSPH 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1667 NSLVEDLNrklaEKVSKLDfvqSRLMTEIAEHNQVKDQLAQITDIpkvVELQHRLEAETAEREEAQNKLAVVTGRLDEit 1746
Cdd:PRK02224 467 VETIEEDR----ERVEELE---AELEDLEEEVEEVEERLERAEDL---VEAEDRIERLEERREDLEELIAERRETIEE-- 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1747 RELDNARLEHGAQILRME-ETAREVGnknAELCELIEFYRNRVEALERLLLASNQELEELNSIQSNQAEgVRDLGDTYSA 1825
Cdd:PRK02224 535 KRERAEELRERAAELEAEaEEKREAA---AEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAA-IADAEDEIER 610
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 386764407 1826 ----AEGRQTESDQDKERYQKLALDCKILQAKYRDAKDEIKRCEKKIKDQRLE-MEGKLEKMKNK 1885
Cdd:PRK02224 611 lrekREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEqVEEKLDELREE 675
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1222-1375 |
1.13e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1222 QQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSA--FEAQTKLSDDLQ 1299
Cdd:COG1579 23 EHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNkeYEALQKEIESLK 102
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386764407 1300 RQKESAQQLVDNLKVELDKERKELAQVNSAFEaqtKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQ 1375
Cdd:COG1579 103 RRISDLEDEILELMERIEELEEELAELEAELA---ELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPE 175
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
866-1627 |
1.36e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.26 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 866 EEAFKRKQKVVQLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEairfINTIRDRLQQDFNGVNTPQQLGTCMTEFLKMy 945
Cdd:PRK04863 286 EEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQD----YQAASDHLNLVQTALRQQEKIERYQADLEEL- 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 946 dqmEVRYEESSSLVEKLTESQAKLEMQVAELQVELENkdtnqhsgaLIKQLNDTIQNLEkvnaklsedntVSHTVHSKLN 1025
Cdd:PRK04863 361 ---EERLEEQNEVVEEADEQQEENEARAEAAEEEVDE---------LKSQLADYQQALD-----------VQQTRAIQYQ 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1026 ES---LLKAQKELDLRAKIIENLEASERNLSMKLCE----LKDLKNKLKSSDEkiaqIKETYEeqiKALQAKCdmeaKKN 1098
Cdd:PRK04863 418 QAvqaLERAKQLCGLPDLTADNAEDWLEEFQAKEQEateeLLSLEQKLSVAQA----AHSQFE---QAYQLVR----KIA 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1099 EHLERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQ------------KLELDMNRKElaLVKSAYEAQT 1166
Cdd:PRK04863 487 GEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQqraerllaefckRLGKNLDDED--ELEQLQEELE 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1167 KLSDDLQRQKESGQQLVDNLKVELEK---ERKELAHVNSA-IGAQTKLSDDLEC---QKESGQQLVDNLKVELEKERkEL 1239
Cdd:PRK04863 565 ARLESLSESVSEARERRMALRQQLEQlqaRIQRLAARAPAwLAAQDALARLREQsgeEFEDSQDVTEYMQQLLERER-EL 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1240 AQVKSVIEAQtKLSDDLQREKESA---------QQLVDNLKVELDKERKELAQVNSA--FEA------QTKLSDDLQRQK 1302
Cdd:PRK04863 644 TVERDELAAR-KQALDEEIERLSQpggsedprlNALAERFGGVLLSEIYDDVSLEDApyFSAlygparHAIVVPDLSDAA 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1303 ESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRE-----------------KESAQQLVDNLKVELDKERKEL 1365
Cdd:PRK04863 723 EQLAGLEDCPEDLYLIEGDPDSFDDSVFSVEELEKAVVVKIadrqwrysrfpevplfgRAAREKRIEQLRAEREELAERY 802
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1366 AQVKSVIEaqtklsdDLQRQKESAQQLVD-NLKVELDKE-RKELAKVKSVI-EAQTKLSD---DLQRQKESAQQLEAQTK 1439
Cdd:PRK04863 803 ATLSFDVQ-------KLQRLHQAFSRFIGsHLAVAFEADpEAELRQLNRRRvELERALADhesQEQQQRSQLEQAKEGLS 875
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1440 LSDDLQRQ-----KESAQQLVDNLKVELDKERK-------------ELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLK 1501
Cdd:PRK04863 876 ALNRLLPRlnllaDETLADRVEEIREQLDEAEEakrfvqqhgnalaQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAK 955
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1502 M------ELDKERKELAQVKSA--IGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVN-------SAFEAQTKL 1566
Cdd:PRK04863 956 QqafaltEVVQRRAHFSYEDAAemLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNqvlaslkSSYDAKRQM 1035
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386764407 1567 SDDLK--LQK------EDAQREVFLVKERLVKE-------KREFEVKLATLEDIIETLEMRCTQMEEERATAYEQI 1627
Cdd:PRK04863 1036 LQELKqeLQDlgvpadSGAEERARARRDELHARlsanrsrRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQV 1111
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1107-1375 |
1.46e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.25 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1107 QSLTQLKEDALENcvlmstkLEELQAKLQEGQQLVDSQKLELdmnrkelalvksayEAQTKLSDDLQRQKESGQQLVDNL 1186
Cdd:COG3096 426 RALCGLPDLTPEN-------AEDYLAAFRAKEQQATEEVLEL--------------EQKLSVADAARRQFEKAYELVCKI 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1187 KVELEKERkelAHVNsaigAQTKLSDDLECQKESGQqlVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQL 1266
Cdd:COG3096 485 AGEVERSQ---AWQT----ARELLRRYRSQQALAQR--LQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEEL 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1267 vDNLKVELDKERKEL-AQVNSAFEAQTklsdDLQRQKESAQQLVDNLKvelDKERKELAqvnsAFEAQTKLSDDLQREKE 1345
Cdd:COG3096 556 -EELLAELEAQLEELeEQAAEAVEQRS----ELRQQLEQLRARIKELA---ARAPAWLA----AQDALERLREQSGEALA 623
|
250 260 270
....*....|....*....|....*....|....*.
gi 386764407 1346 SAQQLVDNLKVELDKERK------ELAQVKSVIEAQ 1375
Cdd:COG3096 624 DSQEVTAAMQQLLEREREatverdELAARKQALESQ 659
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
1316-1512 |
1.70e-04 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 46.53 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1316 LDKERKELAQVNSAFEAQTKLSDDLQREKESAQ-------QLVDNLKVELDKERKElaqvkSVIEAQTKLSDDLQRQKES 1388
Cdd:pfam05262 136 LTKENAGLARRYDQWPGKTQIVIPLKKNILSGNvsdvdtdSISDKKVVEALREDNE-----KGVNFRRDMTDLKERESQE 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1389 AQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESaQQLVDNLKVELDKERKE 1468
Cdd:pfam05262 211 DAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKED-KQVAENQKREIEKAQIE 289
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 386764407 1469 LAQ-VKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELA 1512
Cdd:pfam05262 290 IKKnDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVA 334
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1357-1512 |
1.87e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.30 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1357 ELDKERKELAQVKSVIEAQTKlsdDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQ---Q 1433
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELA---ELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRnnkE 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 386764407 1434 LEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELA 1512
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELA 169
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
1269-1441 |
2.52e-04 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 45.39 E-value: 2.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1269 NLKVELDKERKELAQVNSAFEAQTKLSDDLqrqKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQ 1348
Cdd:smart00787 116 DKQFQLVKTFARLEAKKMWYEWRMKLLEGL---KEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLK 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1349 QLVDNLKV----ELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLS-DD 1423
Cdd:smart00787 193 QLEDELEDcdptELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTfKE 272
|
170
....*....|....*...
gi 386764407 1424 LQRQKESAQQLEAQTKLS 1441
Cdd:smart00787 273 IEKLKEQLKLLQSLTGWK 290
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
1219-1627 |
3.22e-04 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 45.79 E-value: 3.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1219 ESGQQLVDNLKVELEKERKELAQVKSVIE-AQTKLsddlqreKESAQQLVDNLKVELDkerkelAQVNSAFEAQTKLSDD 1297
Cdd:pfam05701 73 ESTKRLIEELKLNLERAQTEEAQAKQDSElAKLRV-------EEMEQGIADEASVAAK------AQLEVAKARHAAAVAE 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1298 LQRQKEsaqqlvdnlkvELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELD--KERKELAQVKSVIEAQ 1375
Cdd:pfam05701 140 LKSVKE-----------ELESLRKEYASLVSERDIAIKRAEEAVSASKEIEKTVEELTIELIatKESLESAHAAHLEAEE 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1376 TKLSDDLQRQKESAqqlvdNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEA------QTKLSDDLQRQKE 1449
Cdd:pfam05701 209 HRIGAALAREQDKL-----NWEKELKQAEEELQRLNQQLLSAKDLKSKLETASALLLDLKAelaaymESKLKEEADGEGN 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1450 SAQQLVDnLKVELDKERKELAQVKSVIEaqtKLSDDLQRQKESAQqlvdNLKMELDKERKELAQVKsaigaqtklsddle 1529
Cdd:pfam05701 284 EKKTSTS-IQAALASAKKELEEVKANIE---KAKDEVNCLRVAAA----SLRSELEKEKAELASLR-------------- 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1530 cQKESVQQL-VDNLKVELEKERKELAKVNS-AFEAQTKLSD-DLKLQK-----EDAQREVFLVKERLVKEKREFEVKLAT 1601
Cdd:pfam05701 342 -QREGMASIaVSSLEAELNRTKSEIALVQAkEKEAREKMVElPKQLQQaaqeaEEAKSLAQAAREELRKAKEEAEQAKAA 420
|
410 420
....*....|....*....|....*...
gi 386764407 1602 lediIETLEMR--CTQMEEERATAYEQI 1627
Cdd:pfam05701 421 ----ASTVESRleAVLKEIEAAKASEKL 444
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
1293-1470 |
3.23e-04 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 45.23 E-value: 3.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1293 KLSDDLQR-QKESAQQLVDNLKVELDKERKELAqvnsAFEAQTKLSDdLQREKESAQQLVDNLKVELDKERKELAQVKSV 1371
Cdd:COG3524 169 QLSERAREdAVRFAEEEVERAEERLRDAREALL----AFRNRNGILD-PEATAEALLQLIATLEGQLAELEAELAALRSY 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1372 ieaqtkLSDDlQRQKESAQQLVDNLKVELDKERKELAKVKSvieaqtklSDDLQRQKESAQQLEAQTKLSddlQRQKESA 1451
Cdd:COG3524 244 ------LSPN-SPQVRQLRRRIAALEKQIAAERARLTGASG--------GDSLASLLAEYERLELEREFA---EKAYTSA 305
|
170
....*....|....*....
gi 386764407 1452 QQLVDNLKVELDKERKELA 1470
Cdd:COG3524 306 LAALEQARIEAARQQRYLA 324
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1050-1437 |
3.28e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 3.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1050 RNLSMKLCELKDLKNKLKSSDEKIAQIKE------TYEEQIKALQAK-CDMEAKKNEHLERNQNQSLTQLKEDALENCVL 1122
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAElqeeleELEEELEELEAElEELREELEKLEKLLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1123 MSTKLEELQAKLQEGQQL---VDSQKLELDMNRKELALVKSAYEAQTKLS-DDLQRQKESGQQLVDNLKVELEKERKELA 1198
Cdd:COG4717 144 LPERLEELEERLEELRELeeeLEELEAELAELQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1199 HVNSAIGAQTKLSDDLECQKESGQQ------------LVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQL 1266
Cdd:COG4717 224 ELEEELEQLENELEAAALEERLKEArlllliaaallaLLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1267 VDNLKVELDK---ERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRE 1343
Cdd:COG4717 304 AEELQALPALeelEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVED 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1344 KESAQQLVDNLKvELDKERKELAQVKSVIEAQTKLS---------DDLQRQKESAQQLVDNLKVELDKERKELAKVKSVI 1414
Cdd:COG4717 384 EEELRAALEQAE-EYQELKEELEELEEQLEELLGELeellealdeEELEEELEELEEELEELEEELEELREELAELEAEL 462
|
410 420
....*....|....*....|...
gi 386764407 1415 EaQTKLSDDLQRQKESAQQLEAQ 1437
Cdd:COG4717 463 E-QLEEDGELAELLQELEELKAE 484
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
810-1217 |
3.96e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.88 E-value: 3.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 810 GQLLSADDLKRELDD--------------LRSKNEELAKQNINGIIKRNKF---ITSLEVNTEKVKQYITDLEEEAFKRK 872
Cdd:pfam15921 409 GNSITIDHLRRELDDrnmevqrleallkaMKSECQGQMERQMAAIQGKNESlekVSSLTAQLESTKEMLRKVVEELTAKK 488
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 873 QKVVQLENTLSKEQSNAKEMAQRLDIAQQEIK------DYHVEAIRFINTIRDRLQqdfNGVNTPQQLGTCMTEFLKMYD 946
Cdd:pfam15921 489 MTLESSERTVSDLTASLQEKERAIEATNAEITklrsrvDLKLQELQHLKNEGDHLR---NVQTECEALKLQMAEKDKVIE 565
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 947 QMEVRYEESSSLVEK-------LTESQAKLEMQVAELQVEL-ENKDTNQHSGALIKQLNDTIQNLEKVNAKL----SEDN 1014
Cdd:pfam15921 566 ILRQQIENMTQLVGQhgrtagaMQVEKAQLEKEINDRRLELqEFKILKDKKDAKIRELEARVSDLELEKVKLvnagSERL 645
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1015 TVSHTVHSKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELK----DLKNKLKSSDEKIAQIKETYE--EQIKALQ 1088
Cdd:pfam15921 646 RAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMEtttnKLKMQLKSAQSELEQTRNTLKsmEGSDGHA 725
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1089 AKCDMEAKKNEHLERNQN---QSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELdmnRKELALVKSayeaq 1165
Cdd:pfam15921 726 MKVAMGMQKQITAKRGQIdalQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKM---AGELEVLRS----- 797
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 386764407 1166 tklsddlqrQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQ 1217
Cdd:pfam15921 798 ---------QERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQ 840
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1354-1516 |
3.96e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.96 E-value: 3.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1354 LKVELDKERKELAQVKSVIEAqtkLSDDLQRQKESAQQL---VDNLKVELDKERKELAKVKSVI-EAQTKLSDDLQRQKE 1429
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAE---LADLLSLERQGNQDLqdsVANLRASLSAAEAERSRLQALLaELAGAGAAAEGRAGE 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1430 SAQQLEAQTKLSDDLQRQKESAQQLVDNLkveldkeRKELAQVKSVIEAQTKLSDDLQRQkesAQQLVDNLKMELDKERK 1509
Cdd:PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAAL-------RRQLAALEAALDASEKRDRESQAK---IADLGRRLNVALAQRVQ 190
|
....*..
gi 386764407 1510 ELAQVKS 1516
Cdd:PRK09039 191 ELNRYRS 197
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
818-1407 |
5.03e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 5.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 818 LKRELDDLRSKNEELAKQNINGIIKRNKFITSLEVNTEKVKQYITDLEEeafkrkqkvvqLENTLSKEQSNAKEMAQRLD 897
Cdd:COG1196 272 LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE-----------LEEELAELEEELEELEEELE 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 898 IAQQEIKDYHVEAIRFINTIRDRLQQdfngvntpqqlgtcmteflkmydqmevRYEESSSLVEKLTESQAKLEMQVAELQ 977
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEA---------------------------LLEAEAELAEAEEELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 978 VELENKDTNQHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQKELDLRAKIIENLEASERNLSMKLC 1057
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1058 ELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKcdMEAKKNEHLERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEG 1137
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAEADYEGF--LEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNI 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1138 QQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQ 1217
Cdd:COG1196 552 VVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1218 KESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDD 1297
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1298 LQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREK----ESAQQLVDNLKVELDK----------ERK 1363
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEppdlEELERELERLEREIEAlgpvnllaieEYE 791
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 386764407 1364 ELAQVKSVIEAQtklSDDLQRQKESAQQLVDnlkvELDKERKEL 1407
Cdd:COG1196 792 ELEERYDFLSEQ---REDLEEARETLEEAIE----EIDRETRER 828
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1414-1623 |
5.55e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 5.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1414 IEAQTKLSDDLQRQKESAQ-QLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDD----LQR 1488
Cdd:COG3883 18 IQAKQKELSELQAELEAAQaELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraraLYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1489 QKESAQQL---------------VDNLKMELDKERKELAQVKSAIgaqtklsDDLECQKESVQQLVDnlkvELEKERKEL 1553
Cdd:COG3883 98 SGGSVSYLdvllgsesfsdfldrLSALSKIADADADLLEELKADK-------AELEAKKAELEAKLA----ELEALKAEL 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 386764407 1554 ----AKVNSAFEAQTKLSDDLKLQKEDAQREvflvKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATA 1623
Cdd:COG3883 167 eaakAELEAQQAEQEALLAQLSAEEAAAEAQ----LAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA 236
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1068-1270 |
6.62e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 6.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1068 SSDEKIAQIKET---YEEQIKALQAKCD-MEAKKNEHLERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDS 1143
Cdd:COG3206 165 NLELRREEARKAlefLEEQLPELRKELEeAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAA 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1144 QKLELDMNRKELALVKSAYEAQTKLSD----DLQRQKESGQQLVDNLKV-ELEKERKELahvNSAIGAQT-KLSDDLECQ 1217
Cdd:COG3206 245 LRAQLGSGPDALPELLQSPVIQQLRAQlaelEAELAELSARYTPNHPDViALRAQIAAL---RAQLQQEAqRILASLEAE 321
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 386764407 1218 KESGQQLVDNLKVELEKERKELAQVKsviEAQTKLSdDLQREKESAQQLVDNL 1270
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELP---ELEAELR-RLEREVEVARELYESL 370
|
|
| dnaK |
PRK00290 |
molecular chaperone DnaK; Provisional |
1331-1443 |
9.72e-04 |
|
molecular chaperone DnaK; Provisional
Pssm-ID: 234715 [Multi-domain] Cd Length: 627 Bit Score: 44.32 E-value: 9.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1331 EAQTKLSDD-LQREKESAQQlvdnlKVELDKERKELAQV------------KSVIEAQTKLSDDlqrQKESAQQLVDNLK 1397
Cdd:PRK00290 495 TASSGLSDEeIERMVKDAEA-----NAEEDKKRKELVEArnqadsliyqteKTLKELGDKVPAD---EKEKIEAAIKELK 566
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 386764407 1398 VELDKERKEL--AKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDD 1443
Cdd:PRK00290 567 EALKGEDKEAikAKTEELTQASQKLGEAMYQQAQAAQGAAGAAAKDDD 614
|
|
| auto_Ata |
NF033481 |
trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an ... |
1083-1435 |
1.06e-03 |
|
trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an architecture that consists of a long signal peptide, a repetitive passenger domain that varies in length from strain to strain, and a C-terminal domain of four transmembrane beta stands that forms one third of the pore for autotransporter activity and anchoring in the outer membrane.
Pssm-ID: 411124 [Multi-domain] Cd Length: 1862 Bit Score: 44.47 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1083 QIKALQAKCDMEAK---KNEHLERNQNQSLTQLKEDaLENCVlMSTKLEELQAKLQEGQQLVDSQKlelDMNRKELALVK 1159
Cdd:NF033481 766 QLKNVDSRVNQNTSnigKNTQNITNLNQKLDDTKTN-LGNQI-TDTNKNLNDAKKDLGNQITDTNT---KLNTTKDQLTT 840
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1160 SAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHvNSAIGAQTKLSDDLE----------CQKESGQQLV---- 1225
Cdd:NF033481 841 QINDTKTELNNTIGNTKTELNTKIDNTKTELENKGLNFAG-NSGADVHRKLGDKLNivggaaastpAAKTSGENVItrtt 919
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1226 -DNLKVELEKERKelaqVKSVIEAQTKLSDDLQREKESAQQlvdnLKVELDKERKELAQVNSAFEAQTKLS-DDLQRQKE 1303
Cdd:NF033481 920 qDGIQIELLKDSK----FDSVTTGNTTLNTNGLTIKEGPSI----TKQGINAGSKQITNVADGINAKDAVNvDQLTKVKE 991
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1304 SAQQLVDNLKVELDKERKELA-QVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDL 1382
Cdd:NF033481 992 NLNGRITDTNNQLNDAKKDLGnQIADTNKNLNDAKKDLGDQITDTNTKLNNTKDQLTTQINDTKTELNNTIGNTKTELEN 1071
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 386764407 1383 QRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLE 1435
Cdd:NF033481 1072 KGLNFAGNSGADVHRKLGDKLNIVGGAAASTPAAKTSGENVITRTTKDGIQIE 1124
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1065-1265 |
1.20e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1065 KLKSSDEKIAQIK---ETYEEQIKALQAKcdMEAKKNEHLERNQNQSLTQLKEDALENcvlmstKLEELQAKLQE----- 1136
Cdd:COG3883 17 QIQAKQKELSELQaelEAAQAELDALQAE--LEELNEEYNELQAELEALQAEIDKLQA------EIAEAEAEIEErreel 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1137 GQQLVDSQKLELDMNRKE--------------LALVKSAYEAQTKLSDDLQRQK---ESGQQLVDNLKVELEKERKEL-- 1197
Cdd:COG3883 89 GERARALYRSGGSVSYLDvllgsesfsdfldrLSALSKIADADADLLEELKADKaelEAKKAELEAKLAELEALKAELea 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1198 --AHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQ 1265
Cdd:COG3883 169 akAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
1296-1459 |
1.22e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 43.86 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1296 DDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDnlkvELDKERKELAQVKSVIEAq 1375
Cdd:pfam05667 338 EELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTLD----LLPDAEENIAKLQALVDA- 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1376 tklsddlqrqkeSAQQLVdNLKVELDKERKEL-AKVKSVIEAQTKLSDDLQRQKESAQQLEAQTK-LSDDLQRQKESAQQ 1453
Cdd:pfam05667 413 ------------SAQRLV-ELAGQWEKHRVPLiEEYRALKEAKSNKEDESQRKLEEIKELREKIKeVAEEAKQKEELYKQ 479
|
....*.
gi 386764407 1454 LVDNLK 1459
Cdd:pfam05667 480 LVAEYE 485
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
952-1099 |
1.66e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.38 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 952 YEESSSLVEKLTESQAK---LEMQVAELQ------VELENKDTNQHSGAL-----IKQLNDTIQNLEKVNAKLSED---- 1013
Cdd:PRK05771 99 EKEIKELEEEISELENEikeLEQEIERLEpwgnfdLDLSLLLGFKYVSVFvgtvpEDKLEELKLESDVENVEYISTdkgy 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1014 NTVSHTVHSKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDM 1093
Cdd:PRK05771 179 VYVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEI 258
|
....*.
gi 386764407 1094 EAKKNE 1099
Cdd:PRK05771 259 ELERAE 264
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
1272-1633 |
1.93e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 43.13 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1272 VELDKERKELAQVNSAFEAQTKLSDDLQRQKesaQQLVDNLKVELDKerKELAQVNSAF-EAQTKLSDDLQRE----KES 1346
Cdd:pfam13166 96 EKIAKLKKEIKDHEEKLDAAEANLQKLDKEK---EKLEADFLDECWK--KIKRKKNSALsEALNGFKYEANFKsrllREI 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1347 AQQLVDNLKVELDKERKELaqVKSVI-EAQTKLS---------DDLQRQKESAQQLVdNLKVELDKERKELAK---VKSV 1413
Cdd:pfam13166 171 EKDNFNAGVLLSDEDRKAA--LATVFsDNKPEIApltfnvidfDALEKAEILIQKVI-GKSSAIEELIKNPDLadwVEQG 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1414 IEAQTKLSDDL---QRQKESAQQLEAQTKLSDDLQRQKESAQQLVDnlKVELDKeRKELAQVKSVIEAQTKLS------D 1484
Cdd:pfam13166 248 LELHKAHLDTCpfcGQPLPAERKAALEAHFDDEFTEFQNRLQKLIE--KVESAI-SSLLAQLPAVSDLASLLSafeldvE 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1485 DLQRQKESAQQLVDNLKMELDKERKELAQVKSaigaqtklsddlecqkesvqqlVDNLKVELEKERKELAKVNSAFEAQT 1564
Cdd:pfam13166 325 DIESEAEVLNSQLDGLRRALEAKRKDPFKSIE----------------------LDSVDAKIESINDLVASINELIAKHN 382
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 386764407 1565 KLSDDLKLQKEDAQREV--FLVKErLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENR 1633
Cdd:pfam13166 383 EITDNFEEEKNKAKKKLrlHLVEE-FKSEIDEYKDKYAGLEKAINSLEKEIKNLEAEIKKLREEIKELEAQ 452
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1734-1961 |
2.03e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1734 KLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEFYRN---RVEALERLLLASNQELEELNSIQS 1810
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEleeEIEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1811 NQAEGVRDLGDTYSAAEGRQTESDQDKERYQKLALDckiLQAKYRDAKDEIKRCEKKIKdqrlEMEGKLEKMKNKMRSLy 1890
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAEELAE---LEEKLEELKEELESLEAELE----ELEAELEELESRLEEL- 377
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 386764407 1891 taevtrmKEKQERDAAKSASELEALTAQNakyeehtrklsNQIVRLNEKILEQQKQHAIISTNLRHLQMQP 1961
Cdd:TIGR02168 378 -------EEQLETLRSKVAQLELQIASLN-----------NEIERLEARLERLEDRRERLQQEIEELLKKL 430
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
1190-1390 |
2.20e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 43.07 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1190 LEKERKELAHVNSAIGAQTKLSDDLECQKESGQ-------QLVDNLKVELEKERKElaqvkSVIEAQTKLSDDLQREKES 1262
Cdd:pfam05262 136 LTKENAGLARRYDQWPGKTQIVIPLKKNILSGNvsdvdtdSISDKKVVEALREDNE-----KGVNFRRDMTDLKERESQE 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1263 AQQLVDNLKVELDKERKELA----QVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQvNSAFEAQtKLSD 1338
Cdd:pfam05262 211 DAKRAQQLKEELDKKQIDADkaqqKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAE-NQKREIE-KAQI 288
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 386764407 1339 DLQREKESAQQLVDNLKVELDKERKELAQV--KSVIEAQTKL---SDDLQRQKESAQ 1390
Cdd:pfam05262 289 EIKKNDEEALKAKDHKAFDLKQESKASEKEaeDKELEAQKKRepvAEDLQKTKPQVE 345
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1122-1549 |
2.71e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1122 LMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTK-LSDDLQRQKESGQQLVDNLKvELEKERKELAHV 1200
Cdd:pfam07888 31 LLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRReLESRVAELKEELRQSREKHE-ELEEKYKELSAS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1201 NSAIGAQtklSDDLECQKESGQQLVdnlkVELEKERKELAQVKSVIEAqtklsdDLQREKESAQQLVDNLKVELDKERKE 1280
Cdd:pfam07888 110 SEELSEE---KDALLAQRAAHEARI----RELEEDIKTLTQRVLERET------ELERMKERAKKAGAQRKEEEAERKQL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1281 LAQVNSAFEAQTKLSDDLQRQKES-------AQQLVDNL-------------KVELDKERKELAQVNSAFEAQTKLSDDL 1340
Cdd:pfam07888 177 QAKLQQTEEELRSLSKEFQELRNSlaqrdtqVLQLQDTIttltqklttahrkEAENEALLEELRSLQERLNASERKVEGL 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1341 QREKESAQQLVDNLKVELDKERKELAQVK-SVIEAQTKLSDDLQRQKESAQQLVDNlkVELDKERKElakvksvieaqtK 1419
Cdd:pfam07888 257 GEELSSMAAQRDRTQAELHQARLQAAQLTlQLADASLALREGRARWAQERETLQQS--AEADKDRIE------------K 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1420 LSDDLQRQKESAQQleaqtklsDDLQRQKesaqqlvdnLKVELDKERkelaqvksvieaqtklsddlqrqkesaqqlvDN 1499
Cdd:pfam07888 323 LSAELQRLEERLQE--------ERMEREK---------LEVELGREK-------------------------------DC 354
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 386764407 1500 LKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKE 1549
Cdd:pfam07888 355 NRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLETV 404
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1045-1209 |
2.77e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1045 LEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETY---EEQIKALQAKCDMEAKKNEHLERNQNQSLTQLKE------- 1114
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYnelQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraralyr 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1115 ------------------DALENCVLMSTKLE---ELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKlsdDLQ 1173
Cdd:COG3883 98 sggsvsyldvllgsesfsDFLDRLSALSKIADadaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA---ELE 174
|
170 180 190
....*....|....*....|....*....|....*.
gi 386764407 1174 RQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTK 1209
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
1300-1638 |
3.10e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 42.53 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1300 RQKESAQQLVDNLKVELDKERKelaQVNSAFEAQTKLSDdlqrekESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLS 1379
Cdd:PLN03229 422 KKREAVKTPVRELEGEVEKLKE---QILKAKESSSKPSE------LALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLR 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1380 DDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQqleaqtklSDDLQRQKESAQQlvdnLK 1459
Cdd:PLN03229 493 EEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSR--------AKALSEKKSKAEK----LK 560
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1460 VELDKERKELAQVKSVIEAQTKLSDDLQRQKES-AQQLVDNLKMELDKERK----ELAQV-KSA----IGAQTKLSDDLE 1529
Cdd:PLN03229 561 AEINKKFKEVMDRPEIKEKMEALKAEVASSGASsGDELDDDLKEKVEKMKKeielELAGVlKSMglevIGVTKKNKDTAE 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1530 cqkesvQQLVDNLKVELEKERKElakVNSAFEAQTKLSD------DLKLQKEDA-QREVFLVKERLVKEKREFEVKLATL 1602
Cdd:PLN03229 641 ------QTPPPNLQEKIESLNEE---INKKIERVIRSSDlkskieLLKLEVAKAsKTPDVTEKEKIEALEQQIKQKIAEA 711
|
330 340 350
....*....|....*....|....*....|....*.
gi 386764407 1603 EDIIETLEmRCTQMEEERATAYEQINKLENRCQEKD 1638
Cdd:PLN03229 712 LNSSELKE-KFEELEAELAAARETAAESNGSLKNDD 746
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1258-1955 |
3.40e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 3.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1258 REKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDL---QRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQT 1334
Cdd:TIGR00606 186 KALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQItskEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIM 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1335 KLSDDLQREKESAQQLvDNLKVELDKERKELAQvkSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKElakVKSVI 1414
Cdd:TIGR00606 266 KLDNEIKALKSRKKQM-EKDNSELELKMEKVFQ--GTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKE---RRLLN 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1415 EAQTKLSDDLQRQKESAQQLEAQTkLSDDLQRQKESAQQLVDNLKVELDKERkelaQVKSVIEAQtklsddLQRQKESAQ 1494
Cdd:TIGR00606 340 QEKTELLVEQGRLQLQADRHQEHI-RARDSLIQSLATRLELDGFERGPFSER----QIKNFHTLV------IERQEDEAK 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1495 QLVDNLKMELDKERKELAQVksaigaqtklsDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLkLQK 1574
Cdd:TIGR00606 409 TAAQLCADLQSKERLKQEQA-----------DEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRI-LEL 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1575 EDAQRevflvkerlvkeKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETfkvec 1654
Cdd:TIGR00606 477 DQELR------------KAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEM----- 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1655 lhhqlksemathnslvedLNRKLAEKVSKLDFVQSRLMTEIAehnqvkDQLAQITDIPKVVELQHRLEAETAEREEAQNK 1734
Cdd:TIGR00606 540 ------------------LTKDKMDKDEQIRKIKSRHSDELT------SLLGYFPNKKQLEDWLHSKSKEINQTRDRLAK 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1735 LAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELiefyrnrvEALERLLLASNQELEELNSIQSNQAE 1814
Cdd:TIGR00606 596 LNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDL--------ERLKEEIEKSSKQRAMLAGATAVYSQ 667
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1815 GVRDLGDTYSAAEGRQTESDQDKERYQKLALDckiLQAKYRDAKDEIKRCEKKIKdqrlemegKLEKMKNKMRSLytaev 1894
Cdd:TIGR00606 668 FITQLTDENQSCCPVCQRVFQTEAELQEFISD---LQSKLRLAPDKLKSTESELK--------KKEKRRDEMLGL----- 731
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 386764407 1895 trmkekqerdAAKSASELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHAIISTNLR 1955
Cdd:TIGR00606 732 ----------APGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEE 782
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1297-1462 |
3.48e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 3.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1297 DLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSV--IEA 1374
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNkeYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1375 QTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKEsaqqlEAQTKLSDDLQRQKESAQQL 1454
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELD-----EELAELEAELEELEAEREEL 168
|
....*...
gi 386764407 1455 VDNLKVEL 1462
Cdd:COG1579 169 AAKIPPEL 176
|
|
| PLN03188 |
PLN03188 |
kinesin-12 family protein; Provisional |
1340-1654 |
3.77e-03 |
|
kinesin-12 family protein; Provisional
Pssm-ID: 215621 [Multi-domain] Cd Length: 1320 Bit Score: 42.61 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1340 LQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTK--LSDDLQRQKESAQQLVDN-----------LKVELDKERKE 1406
Cdd:PLN03188 951 LLKEKYENHPEVLRTKIELKRVQDELEHYRNFYDMGERevLLEEIQDLRSQLQYYIDSslpsarkrnslLKLTYSCEPSQ 1030
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1407 LAKVKSVIEAQTKlSDDLQRQKESAQQLEAQTK---LSDDLQRQKESAQQLVDNLKVELDKERKELAQVKsviEAQTKLS 1483
Cdd:PLN03188 1031 APPLNTIPESTDE-SPEKKLEQERLRWTEAESKwisLAEELRTELDASRALAEKQKHELDTEKRCAEELK---EAMQMAM 1106
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1484 DDLQRQKESAQQLVDNLKMELDKERK---ELAQVKSAI------GAQTKLSDDLECQkesvqqlVDNLKVELEKERKELA 1554
Cdd:PLN03188 1107 EGHARMLEQYADLEEKHIQLLARHRRiqeGIDDVKKAAaragvrGAESKFINALAAE-------ISALKVEREKERRYLR 1179
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1555 KVNSAFEAQTKLSDDLklqkedaqrevflvkerlVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRC 1634
Cdd:PLN03188 1180 DENKSLQAQLRDTAEA------------------VQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241
|
330 340
....*....|....*....|....*
gi 386764407 1635 QEKDN-----VKSSQLQVETFKVEC 1654
Cdd:PLN03188 1242 ENEIStlnqlVAESRLPKEAIRPAC 1266
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1052-1593 |
4.41e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1052 LSMKLCELKDLKNKLKSSDEKIAQIKETYEE----------QIKALQAKCDMEAKKNEHLERNQNQSLTQLKedalencv 1121
Cdd:PRK01156 178 LRAEISNIDYLEEKLKSSNLELENIKKQIADdekshsitlkEIERLSIEYNNAMDDYNNLKSALNELSSLED-------- 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1122 lMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKS--AYEAQTKLSD--DLQRQKESGQQLVDNLKVE-------- 1189
Cdd:PRK01156 250 -MKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINdpVYKNRNYINDyfKYKNDIENKKQILSNIDAEinkyhaii 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1190 -----LEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLV---DNLKVELEKERKElaqvksvieaQTKLSDDLQREKE 1261
Cdd:PRK01156 329 kklsvLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLksiESLKKKIEEYSKN----------IERMSAFISEILK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1262 SAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKEsaqQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQ 1341
Cdd:PRK01156 399 IQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLD---ELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYN 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1342 REKESAQQLVDNLKVE---LDKERKELAQVKSVIEA-QTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQ 1417
Cdd:PRK01156 476 EKKSRLEEKIREIEIEvkdIDEKIVDLKKRKEYLESeEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRY 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1418 TKLS-DDLQRQKESAQQLEAQTKLSD--DLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQ 1494
Cdd:PRK01156 556 KSLKlEDLDSKRTSWLNALAVISLIDieTNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKY 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1495 QLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKveleKERKELAKVNSAFEAQTKLSDDLKLQK 1574
Cdd:PRK01156 636 NEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLK----KSRKALDDAKANRARLESTIEILRTRI 711
|
570
....*....|....*....
gi 386764407 1575 EDAQREVFLVKERLVKEKR 1593
Cdd:PRK01156 712 NELSDRINDINETLESMKK 730
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
224-467 |
4.92e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 4.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 224 ELLEQRTKELRGIRTQLEVVRYEKALLEEQQMEKDELIKVLNKEKMMAKMELEKLRnVKLTEEHHDNESHHIMPYEFEHM 303
Cdd:TIGR02168 253 EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILR-ERLANLERQLEELEAQLEELESK 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 304 KGCLLKEIGLKESLIAEITDKLHDLRVENSELSEKLNLAGKRLLEYTDRIRFLESRVDDLTRIVSSRDVMISSLESDKQE 383
Cdd:TIGR02168 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 384 LDkclkEARDDLHNRIEVLNASSDLLDCSLSPNTTPEnlassvIDKQLREKEHENAELKEKLLNLNNSQRELCQALSSFL 463
Cdd:TIGR02168 412 LE----DRRERLQQEIEELLKKLEEAELKELQAELEE------LEEELEELQEELERLEEALEELREELEEAEQALDAAE 481
|
....
gi 386764407 464 QKHN 467
Cdd:TIGR02168 482 RELA 485
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
573-1104 |
5.07e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 5.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 573 NNDLELDNERLN---DKCAELKSIIDRGDQHLADINLQLIEKEKQIKDVGAEIQELRKRNINLENMLSQIADKEASAASH 649
Cdd:TIGR04523 109 NSEIKNDKEQKNkleVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKN 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 650 AQHLKQcgELLRAKYEVcrNELIAKNAAQDELVRMMmvpdgETLNGRVRQLID-LEMMHDEHNKMYAQMLK---QLNELS 725
Cdd:TIGR04523 189 IDKIKN--KLLKLELLL--SNLKKKIQKNKSLESQI-----SELKKQNNQLKDnIEKKQQEINEKTTEISNtqtQLNQLK 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 726 AKHDNMthshLDFVKRTEIELETKNAQImafDEHNNHFDRFLTRIFTLlrsRNCPKSTTMGSATNFLESMH-----IEKR 800
Cdd:TIGR04523 260 DEQNKI----KKQLSEKQKELEQNNKKI---KELEKQLNQLKSEISDL---NNQKEQDWNKELKSELKNQEkkleeIQNQ 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 801 FENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQningIIKRNKFITSLEVNTEKVKQYITDLEEEAFKRKQKVVQLEN 880
Cdd:TIGR04523 330 ISQNNKIISQLNEQISQLKKELTNSESENSEKQRE----LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK 405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 881 TLSKEQSNAKEMAQRLDIAQQEIKDYHVEAIRFINTIRDRLQQDfngvntpqqlgtcmTEFLKMYDQMEVRYEESSSLVE 960
Cdd:TIGR04523 406 LNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQD--------------SVKELIIKNLDNTRESLETQLK 471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 961 KLTESQAKLEMQVAELQVELENKDTNqhsgalIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQKEL-DLRA 1039
Cdd:TIGR04523 472 VLSRSINKIKQNLEQKQKELKSKEKE------LKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKIsDLED 545
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 386764407 1040 KII--------ENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERN 1104
Cdd:TIGR04523 546 ELNkddfelkkENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1399-1555 |
5.37e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 5.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1399 ELDKERKELAKVKSVIEAQtkLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEA 1478
Cdd:COG1579 14 ELDSELDRLEHRLKELPAE--LAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEY 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 386764407 1479 QtklsdDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAK 1555
Cdd:COG1579 92 E-----ALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1231-1505 |
5.60e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 5.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1231 ELEKERKELAqvksviEAQTKLSDD---LQREKESAQQLV-DNLKVELDKE-RKELAQVNsafEAQTKLSDDLQRQKESA 1305
Cdd:COG3096 789 ELRAERDELA------EQYAKASFDvqkLQRLHQAFSQFVgGHLAVAFAPDpEAELAALR---QRRSELERELAQHRAQE 859
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1306 QQL---VDNLKVELDKERKELAQVNsafeaqtkLSDDlqrekESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDL 1382
Cdd:COG3096 860 QQLrqqLDQLKEQLQLLNKLLPQAN--------LLAD-----ETLADRLEELREELDAAQEAQAFIQQHGKALAQLEPLV 926
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1383 QRQKESAQQlVDNLKVELDKERKELAKVKSVIEAqtkLSDDLQRQ-----KESAQQLEAQTKLSDDLQRQKESAQQlvdn 1457
Cdd:COG3096 927 AVLQSDPEQ-FEQLQADYLQAKEQQRRLKQQIFA---LSEVVQRRphfsyEDAVGLLGENSDLNEKLRARLEQAEE---- 998
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 386764407 1458 lkvELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELD 1505
Cdd:COG3096 999 ---ARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELE 1043
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
877-1430 |
5.82e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 5.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 877 QLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEAIRFINTIRDRLQQDFNGVNTPQQLGTCMTEFLKMyDQMEVRYEESS 956
Cdd:TIGR00606 574 QLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDL-ERLKEEIEKSS 652
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 957 SLVEKLTESQAKLEMQVAELQvelenkDTNQHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQKELD 1036
Cdd:TIGR00606 653 KQRAMLAGATAVYSQFITQLT------DENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRD 726
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1037 LrakIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAkcdmeakknehlernqnqslTQLKEDA 1116
Cdd:TIGR00606 727 E---MLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGT--------------------IMPEEES 783
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1117 LENCVLMSTKLEELQAKLQE-----GQQLVDSQKLELDMN----RKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLK 1187
Cdd:TIGR00606 784 AKVCLTDVTIMERFQMELKDverkiAQQAAKLQGSDLDRTvqqvNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLK 863
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1188 VELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLV 1267
Cdd:TIGR00606 864 SKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKV 943
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1268 DNLKVELDKERKELAQVnsafeaQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNsafEAQTKLSDDLQREKESA 1347
Cdd:TIGR00606 944 NDIKEKVKNIHGYMKDI------ENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKIN---EDMRLMRQDIDTQKIQE 1014
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1348 QQLVDNLKveLDKERKELAQVKSVIEAQTKLSDDLQ--RQKESAQQLVDNLKVELDKERKELAKVK----SVIEAQTKLS 1421
Cdd:TIGR00606 1015 RWLQDNLT--LRKRENELKEVEEELKQHLKEMGQMQvlQMKQEHQKLEENIDLIKRNHVLALGRQKgyekEIKHFKKELR 1092
|
....*....
gi 386764407 1422 DDLQRQKES 1430
Cdd:TIGR00606 1093 EPQFRDAEE 1101
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1247-1495 |
5.93e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.81 E-value: 5.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1247 EAQTKLSDDLQR---EKESAQQLVDNLKVEL---DKERKELAQVNSAFE----AQTKLSDDLQRQKESAQQLVDNLKVEL 1316
Cdd:PLN02939 149 QARLQALEDLEKiltEKEALQGKINILEMRLsetDARIKLAAQEKIHVEileeQLEKLRNELLIRGATEGLCVHSLSKEL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1317 DKERKElaqvnsafeaQTKLSDDLQ--REKESAQQLVDNLKVELDKERKEL-AQVKSV----IEAQTKLSDDLQRQKESA 1389
Cdd:PLN02939 229 DVLKEE----------NMLLKDDIQflKAELIEVAETEERVFKLEKERSLLdASLRELeskfIVAQEDVSKLSPLQYDCW 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1390 QQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAqqleAQTKLSDDLQRQKESAQQLVDNLKVELDKERKEL 1469
Cdd:PLN02939 299 WEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASL----KEANVSKFSSYKVELLQQKLKLLEERLQASDHEI 374
|
250 260
....*....|....*....|....*..
gi 386764407 1470 -AQVKSVIEAQTKLSDDLQRQKESAQQ 1495
Cdd:PLN02939 375 hSYIQLYQESIKEFQDTLSKLKEESKK 401
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
1337-1488 |
6.14e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 41.19 E-value: 6.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1337 SDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQtklsddlqRQKESAQQLVDNLKVELDKeRKELAKVKSViea 1416
Cdd:COG1566 78 PTDLQAALAQAEAQLAAAEAQLARLEAELGAEAEIAAAE--------AQLAAAQAQLDLAQRELER-YQALYKKGAV--- 145
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 386764407 1417 qtklsddlqrqkeSAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKE---RKELAQVKSVIEAQTKLSDDLQR 1488
Cdd:COG1566 146 -------------SQQELDEARAALDAAQAQLEAAQAQLAQAQAGLREEeelAAAQAQVAQAEAALAQAELNLAR 207
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
1253-1367 |
6.30e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 41.19 E-value: 6.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1253 SDDLQREKESAQQLVDNLKVELDKERKEL----------AQVNSAFEAQTKLSDDLQRQKE-------SAQQLvDNLKVE 1315
Cdd:COG1566 78 PTDLQAALAQAEAQLAAAEAQLARLEAELgaeaeiaaaeAQLAAAQAQLDLAQRELERYQAlykkgavSQQEL-DEARAA 156
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 386764407 1316 LDKERKELAQVNSAFeAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQ 1367
Cdd:COG1566 157 LDAAQAQLEAAQAQL-AQAQAGLREEEELAAAQAQVAQAEAALAQAELNLAR 207
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
1424-1578 |
6.49e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 41.33 E-value: 6.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1424 LQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKV-ELDKER-KELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLK 1501
Cdd:PRK09510 67 QQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLkQLEKERlAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAK 146
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 386764407 1502 MELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKlQKEDAQ 1578
Cdd:PRK09510 147 AKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAK-KKAAAE 222
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
1262-1377 |
7.23e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 40.87 E-value: 7.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1262 SAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQvnsafeAQTKLSDDLQ 1341
Cdd:TIGR04320 244 FDKTPIPNPPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELAN------AQAQALQTAQ 317
|
90 100 110
....*....|....*....|....*....|....*.
gi 386764407 1342 REKESAQQLVDNLKVELDKERKELAQVKSVIEAQTK 1377
Cdd:TIGR04320 318 NNLATAQAALANAEARLAKAKEALANLNADLAKKQA 353
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1390-1523 |
7.39e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.35 E-value: 7.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1390 QQLVDNLKVELDKErKElaKVKSVIEAQTKLSDDLQRQKESAQQLEAQT-KLSDDLQRQKESAQQLVDNLKVELDKE-RK 1467
Cdd:PRK00409 501 ENIIEEAKKLIGED-KE--KLNELIASLEELERELEQKAEEAEALLKEAeKLKEELEEKKEKLQEEEDKLLEEAEKEaQQ 577
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 386764407 1468 ELAQVKSVIEAQTKLSDDLQRQKES---AQQLVDNLKmELDKERKELAQVKSAIGAQTK 1523
Cdd:PRK00409 578 AIKEAKKEADEIIKELRQLQKGGYAsvkAHELIEARK-RLNKANEKKEKKKKKQKEKQE 635
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
1304-1419 |
7.88e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 40.87 E-value: 7.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1304 SAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVksvieaQTKLSDDLQ 1383
Cdd:TIGR04320 244 FDKTPIPNPPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELANA------QAQALQTAQ 317
|
90 100 110
....*....|....*....|....*....|....*.
gi 386764407 1384 RQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTK 1419
Cdd:TIGR04320 318 NNLATAQAALANAEARLAKAKEALANLNADLAKKQA 353
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1442-1960 |
7.90e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 7.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1442 DDLQRQKESAQQLVDNLKVELDKERKELAQ---VKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAI 1518
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRtenIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1519 GAQTKLSDDLECQKESVQQLVDNLKvELEKERKELAKVNSAFEAQTKLSDDLKlQKEDAQREVFLVKERLVKEKREFEVK 1598
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIR-ELEERIEELKKEIEELEEKVKELKELK-EKAEEYIKLSEFYEEYLDELREIEKR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1599 LATLEDIIETLEMRCTQMEEERATAYE----------QINKLENRCQEKDNVKSSQLQVETFKVEcLHHQLKSEMATHNS 1668
Cdd:PRK03918 316 LSRLEEEINGIEERIKELEEKEERLEElkkklkelekRLEELEERHELYEEAKAKKEELERLKKR-LTGLTPEKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1669 LVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDIPKV----VELQHR---LEAETAEREEAQNKLAVVTGR 1741
Cdd:PRK03918 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgreLTEEHRkelLEEYTAELKRIEKELKEIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1742 LDEITRELDNAR--LEHGAQILRMEETAREVGNKNAEL-----------CELIEFYRNRVEALERLLLASNQELEELNSI 1808
Cdd:PRK03918 475 ERKLRKELRELEkvLKKESELIKLKELAEQLKELEEKLkkynleelekkAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1809 QSNQAEGVRDLGDTYSAAEGRQTE-SDQDKERYQKLALDCKILQAKYR------DAKDEIKRCEKKIKDQRLEMEGKLEK 1881
Cdd:PRK03918 555 KKKLAELEKKLDELEEELAELLKElEELGFESVEELEERLKELEPFYNeylelkDAEKELEREEKELKKLEEELDKAFEE 634
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 386764407 1882 MKNKMRSLytaevtRMKEKQERDAAKSASELEaltaqNAKYEEHTRKLSNQIVRLNEKILEQQKQHAIISTNLRHLQMQ 1960
Cdd:PRK03918 635 LAETEKRL------EELRKELEELEKKYSEEE-----YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEE 702
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
1450-1565 |
8.23e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 40.87 E-value: 8.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1450 SAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQvksaigAQTKLSDDLE 1529
Cdd:TIGR04320 244 FDKTPIPNPPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELAN------AQAQALQTAQ 317
|
90 100 110
....*....|....*....|....*....|....*.
gi 386764407 1530 CQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTK 1565
Cdd:TIGR04320 318 NNLATAQAALANAEARLAKAKEALANLNADLAKKQA 353
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1470-1644 |
9.05e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 9.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1470 AQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIgaqtklsDDLECQKESVQQLVDNLKVELEKE 1549
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAEL-------EALQAEIDKLQAEIAEAEAEIEER 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1550 RKELAK---------------------------------VNSAFEAQTKLSDDLKLQK---EDAQREVFLVKERLVKEKR 1593
Cdd:COG3883 85 REELGEraralyrsggsvsyldvllgsesfsdfldrlsaLSKIADADADLLEELKADKaelEAKKAELEAKLAELEALKA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 386764407 1594 EFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQ 1644
Cdd:COG3883 165 ELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAA 215
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
1249-1510 |
9.37e-03 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 41.01 E-value: 9.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1249 QTKLSDDLQREKESAQQLVD-NLKVELDKERKELAQvNSAFEAQTKLSDDLQRQKESAQQLVDNlKVELDKERKELAQVN 1327
Cdd:pfam02029 76 QKRLQEALERQKEFDPTIADeKESVAERKENNEEEE-NSSWEKEEKRDSRLGRYKEEETEIREK-EYQENKWSTEVRQAE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1328 SafeaqtKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKEL 1407
Cdd:pfam02029 154 E------EGEEEEDKSEEAEEVPTENFAKEEVKDEKIKKEKKVKYESKVFLDQKRGHPEVKSQNGEEEVTKLKVTTKRRQ 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 1408 AKVKSVIEaqtklsddlqRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQ 1487
Cdd:pfam02029 228 GGLSQSQE----------REEEAEVFLEAEQKLEELRRRRQEKESEEFEKLRQKQQEAELELEELKKKREERRKLLEEEE 297
|
250 260
....*....|....*....|...
gi 386764407 1488 RQKESAQQLVDNLKMELDKERKE 1510
Cdd:pfam02029 298 QRRKQEEAERKLREEEEKRRMKE 320
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
810-1047 |
9.94e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 9.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 810 GQLLSADDLKRELDDLRSKNEELAKQningiikrnkfITSLEVNTEKVKQYITDLEEEAFKRKQKVVQLENTLSKEQSNA 889
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKE-----------LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764407 890 KEMAQRLDIAQQEIKDYHVEAIRFINTIRDRLQQDFNGVNTPQQLgtcMTEFLKMYDQMEVRYEESSSLVEKLTESQAKL 969
Cdd:COG4942 86 AELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPED---FLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 386764407 970 EMQVAELQVELenkdtnqhsgaliKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQKELDLRAKIIENLEA 1047
Cdd:COG4942 163 AALRAELEAER-------------AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| |
