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Conserved domains on  [gi|371502106|ref|NP_001243063|]
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vitamin K-dependent protein Z isoform 1 precursor [Homo sapiens]

Protein Classification

calcium-binding EGF-like domain-containing protein; coagulation factor( domain architecture ID 12188441)

calcium-binding epidermal growth factor (EGF)-like domain-containing protein may play a crucial role in numerous protein-protein interactions| coagulation factor is a vitamin K-dependent protein S1 family serine peptidase, similar to human coagulation factor X that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GLA smart00069
Domain containing Gla (gamma-carboxyglutamate) residues; A hyaluronan-binding domain found in ...
 44-108 1.22e-28

Domain containing Gla (gamma-carboxyglutamate) residues; A hyaluronan-binding domain found in proteins associated with the extracellular matrix, cell adhesion and cell migration.


:

Pssm-ID: 214503  Cd Length: 65  Bit Score: 107.01  E-value: 1.22e-28
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 371502106    44 ESLFLPASKANDVLVRWKRAGSYLLEELFEGNLEKECYEEICVYEEAREVFENEVVTDEFWRRYK 108
Cdd:smart00069   1 GSVFLSRQEANKVLRRQRRANAFLLEELRPGNLERECQEEICSLEEAREVFEDNEGTDEFYRRYY 65
Trypsin pfam00089
Trypsin;
211-363 2.66e-24

Trypsin;


:

Pssm-ID: 459667 [Multi-domain]  Cd Length: 219  Bit Score: 99.82  E-value: 2.66e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371502106  211 PWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRNITV---KTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSLL 287
Cdd:pfam00089  13 PWQVSLQLSSGKHFCGGSLISENWVLTAAHCVSGASDVKVvlgAHNIVLREGGEQKFDVEKIIVHPNYNPDTLDNDIALL 92

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 371502106  288 ELEWPIQCPGAGLPVCTPEKDFAEHlliPRTRGLLSGWARNGTD-LGNSLTTRPVTLVEGEECGQVLNVTVTTRTYC 363
Cdd:pfam00089  93 KLESPVTLGDTVRPICLPDASSDLP---VGTTCTVSGWGNTKTLgPSDTLQEVTVPVVSRETCRSAYGGTVTDTMIC 166
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 158-187 3.71e-09

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 51.86  E-value: 3.71e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 371502106  158 GCQHFCLPGQESYTCSCAQGYRLGEDHKQC 187
Cdd:pfam14670   7 GCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 117-145 1.68e-06

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


:

Pssm-ID: 238011  Cd Length: 38  Bit Score: 44.55  E-value: 1.68e-06
                         10        20
                 ....*....|....*....|....*....
gi 371502106 117 PCLHNGSCQDSIWGYTCTCSPGYEGSNCE 145
Cdd:cd00054   10 PCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
 
Name Accession Description Interval E-value
GLA smart00069
Domain containing Gla (gamma-carboxyglutamate) residues; A hyaluronan-binding domain found in ...
 44-108 1.22e-28

Domain containing Gla (gamma-carboxyglutamate) residues; A hyaluronan-binding domain found in proteins associated with the extracellular matrix, cell adhesion and cell migration.


Pssm-ID: 214503  Cd Length: 65  Bit Score: 107.01  E-value: 1.22e-28
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 371502106    44 ESLFLPASKANDVLVRWKRAGSYLLEELFEGNLEKECYEEICVYEEAREVFENEVVTDEFWRRYK 108
Cdd:smart00069   1 GSVFLSRQEANKVLRRQRRANAFLLEELRPGNLERECQEEICSLEEAREVFEDNEGTDEFYRRYY 65
Trypsin pfam00089
Trypsin;
211-363 2.66e-24

Trypsin;


Pssm-ID: 459667 [Multi-domain]  Cd Length: 219  Bit Score: 99.82  E-value: 2.66e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371502106  211 PWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRNITV---KTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSLL 287
Cdd:pfam00089  13 PWQVSLQLSSGKHFCGGSLISENWVLTAAHCVSGASDVKVvlgAHNIVLREGGEQKFDVEKIIVHPNYNPDTLDNDIALL 92

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 371502106  288 ELEWPIQCPGAGLPVCTPEKDFAEHlliPRTRGLLSGWARNGTD-LGNSLTTRPVTLVEGEECGQVLNVTVTTRTYC 363
Cdd:pfam00089  93 KLESPVTLGDTVRPICLPDASSDLP---VGTTCTVSGWGNTKTLgPSDTLQEVTVPVVSRETCRSAYGGTVTDTMIC 166
Gla pfam00594
Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain; This domain is ...
 68-108 1.63e-22

Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain; This domain is responsible for the high-affinity binding of calcium ions. This domain contains post-translational modifications of many glutamate residues by Vitamin K-dependent carboxylation to form gamma-carboxyglutamate (Gla).


Pssm-ID: 459861  Cd Length: 41  Bit Score: 89.51  E-value: 1.63e-22
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 371502106   68 LEELFEGNLEKECYEEICVYEEAREVFENEVVTDEFWRRYK 108
Cdd:pfam00594   1 LEELKPGNLERECYEEICSYEEAREIFEDDEKTMEFWKKYT 41
Tryp_SPc cd00190
Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens ...
 211-363 2.34e-22

Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.


Pssm-ID: 238113 [Multi-domain]  Cd Length: 232  Bit Score: 95.04  E-value: 2.34e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371502106 211 PWQVKLTNSEGKDFCGGVIIRENFVLTTAKC--SLLHRNITVK---TYFNRTSQDPLMIKITHVHVHMRYDADAGENDLS 285
Cdd:cd00190   13 PWQVSLQYTGGRHFCGGSLISPRWVLTAAHCvySSAPSNYTVRlgsHDLSSNEGGGQVIKVKKVIVHPNYNPSTYDNDIA 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371502106 286 LLELEWPIQCPGAGLPVCTPEKDFaehLLIPRTRGLLSGWARNGTDLGNSLTTRPVTL--VEGEECGQVL--NVTVTTRT 361
Cdd:cd00190   93 LLKLKRPVTLSDNVRPICLPSSGY---NLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVpiVSNAECKRAYsyGGTITDNM 169


                 ..
gi 371502106 362 YC 363
Cdd:cd00190  170 LC 171
Tryp_SPc smart00020
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens ...
 211-366 2.08e-20

Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.


Pssm-ID: 214473  Cd Length: 229  Bit Score: 89.27  E-value: 2.08e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371502106   211 PWQVKLTNSEGKDFCGGVIIRENFVLTTAKC--SLLHRNITVK--TYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSL 286
Cdd:smart00020  14 PWQVSLQYGGGRHFCGGSLISPRWVLTAAHCvrGSDPSNIRVRlgSHDLSSGEEGQVIKVSKVIIHPNYNPSTYDNDIAL 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371502106   287 LELEWPIQCPGAGLPVCTPEKDfaeHLLIPRTRGLLSGWARNGTDLGnsltTRPVTLvegeecgQVLNVTVTTRTYCERS 366
Cdd:smart00020  94 LKLKEPVTLSDNVRPICLPSSN---YNVPAGTTCTVSGWGRTSEGAG----SLPDTL-------QEVNVPIVSNATCRRA 159
COG5640 COG5640
Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, ...
 208-422 8.93e-14

Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444365 [Multi-domain]  Cd Length: 262  Bit Score: 70.83  E-value: 8.93e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371502106 208 QDLPWQVKLTNSEGKD--FCGGVIIRENFVLTTAKCSLLHRNITVKTYF---NRTSQDPLMIKITHVHVHMRYDADAGEN 282
Cdd:COG5640   40 GEYPWMVALQSSNGPSgqFCGGTLIAPRWVLTAAHCVDGDGPSDLRVVIgstDLSTSGGTVVKVARIVVHPDYDPATPGN 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371502106 283 DLSLLELEWPIQcPGAGLPVCTPEKDFAehlliPRTRGLLSGWARNGTDLGNSlttrPVTLvegeecgQVLNVTVTTRTY 362
Cdd:COG5640  120 DIALLKLATPVP-GVAPAPLATSADAAA-----PGTPATVAGWGRTSEGPGSQ----SGTL-------RKADVPVVSDAT 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371502106 363 CerssvAAMHWMDGSV---------------------VTREHRGSWFLTGVL--GSQPVGGQAHMVlVTKVSRYSLWFKQ 419
Cdd:COG5640  183 C-----AAYGGFDGGTmlcagypeggkdacqgdsggpLVVKDGGGWVLVGVVswGGGPCAAGYPGV-YTRVSAYRDWIKS 256


                 ...
gi 371502106 420 IMN 422
Cdd:COG5640  257 TAG 259
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 158-187 3.71e-09

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 51.86  E-value: 3.71e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 371502106  158 GCQHFCLPGQESYTCSCAQGYRLGEDHKQC 187
Cdd:pfam14670   7 GCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 117-145 1.68e-06

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 44.55  E-value: 1.68e-06
                         10        20
                 ....*....|....*....|....*....
gi 371502106 117 PCLHNGSCQDSIWGYTCTCSPGYEGSNCE 145
Cdd:cd00054   10 PCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
EGF pfam00008
EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very ...
 113-143 3.60e-05

EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.


Pssm-ID: 394967  Cd Length: 31  Bit Score: 40.44  E-value: 3.60e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 371502106  113 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSN 143
Cdd:pfam00008   1 CAPNPCSNGGTCVDTPGGYTCICPEGYTGKR 31
EGF_CA smart00179
Calcium-binding EGF-like domain;
117-145 9.35e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 39.54  E-value: 9.35e-05
                           10        20        30
                   ....*....|....*....|....*....|
gi 371502106   117 PCLHNGSCQDSIWGYTCTCSPGYE-GSNCE 145
Cdd:smart00179  10 PCQNGGTCVNTVGSYRCECPPGYTdGRNCE 39
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 158-185 5.27e-03

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 38.13  E-value: 5.27e-03
                         10        20
                 ....*....|....*....|....*...
gi 371502106 158 GCQHFCLPGQESYTCSCAQGYRLGEDHK 185
Cdd:cd01475  196 VCQQVCISTPGSYLCACTEGYALLEDNK 223
 
Name Accession Description Interval E-value
GLA smart00069
Domain containing Gla (gamma-carboxyglutamate) residues; A hyaluronan-binding domain found in ...
 44-108 1.22e-28

Domain containing Gla (gamma-carboxyglutamate) residues; A hyaluronan-binding domain found in proteins associated with the extracellular matrix, cell adhesion and cell migration.


Pssm-ID: 214503  Cd Length: 65  Bit Score: 107.01  E-value: 1.22e-28
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 371502106    44 ESLFLPASKANDVLVRWKRAGSYLLEELFEGNLEKECYEEICVYEEAREVFENEVVTDEFWRRYK 108
Cdd:smart00069   1 GSVFLSRQEANKVLRRQRRANAFLLEELRPGNLERECQEEICSLEEAREVFEDNEGTDEFYRRYY 65
Trypsin pfam00089
Trypsin;
211-363 2.66e-24

Trypsin;


Pssm-ID: 459667 [Multi-domain]  Cd Length: 219  Bit Score: 99.82  E-value: 2.66e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371502106  211 PWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRNITV---KTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSLL 287
Cdd:pfam00089  13 PWQVSLQLSSGKHFCGGSLISENWVLTAAHCVSGASDVKVvlgAHNIVLREGGEQKFDVEKIIVHPNYNPDTLDNDIALL 92

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 371502106  288 ELEWPIQCPGAGLPVCTPEKDFAEHlliPRTRGLLSGWARNGTD-LGNSLTTRPVTLVEGEECGQVLNVTVTTRTYC 363
Cdd:pfam00089  93 KLESPVTLGDTVRPICLPDASSDLP---VGTTCTVSGWGNTKTLgPSDTLQEVTVPVVSRETCRSAYGGTVTDTMIC 166
Gla pfam00594
Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain; This domain is ...
 68-108 1.63e-22

Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain; This domain is responsible for the high-affinity binding of calcium ions. This domain contains post-translational modifications of many glutamate residues by Vitamin K-dependent carboxylation to form gamma-carboxyglutamate (Gla).


Pssm-ID: 459861  Cd Length: 41  Bit Score: 89.51  E-value: 1.63e-22
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 371502106   68 LEELFEGNLEKECYEEICVYEEAREVFENEVVTDEFWRRYK 108
Cdd:pfam00594   1 LEELKPGNLERECYEEICSYEEAREIFEDDEKTMEFWKKYT 41
Tryp_SPc cd00190
Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens ...
 211-363 2.34e-22

Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.


Pssm-ID: 238113 [Multi-domain]  Cd Length: 232  Bit Score: 95.04  E-value: 2.34e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371502106 211 PWQVKLTNSEGKDFCGGVIIRENFVLTTAKC--SLLHRNITVK---TYFNRTSQDPLMIKITHVHVHMRYDADAGENDLS 285
Cdd:cd00190   13 PWQVSLQYTGGRHFCGGSLISPRWVLTAAHCvySSAPSNYTVRlgsHDLSSNEGGGQVIKVKKVIVHPNYNPSTYDNDIA 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371502106 286 LLELEWPIQCPGAGLPVCTPEKDFaehLLIPRTRGLLSGWARNGTDLGNSLTTRPVTL--VEGEECGQVL--NVTVTTRT 361
Cdd:cd00190   93 LLKLKRPVTLSDNVRPICLPSSGY---NLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVpiVSNAECKRAYsyGGTITDNM 169


                 ..
gi 371502106 362 YC 363
Cdd:cd00190  170 LC 171
Tryp_SPc smart00020
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens ...
 211-366 2.08e-20

Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.


Pssm-ID: 214473  Cd Length: 229  Bit Score: 89.27  E-value: 2.08e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371502106   211 PWQVKLTNSEGKDFCGGVIIRENFVLTTAKC--SLLHRNITVK--TYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSL 286
Cdd:smart00020  14 PWQVSLQYGGGRHFCGGSLISPRWVLTAAHCvrGSDPSNIRVRlgSHDLSSGEEGQVIKVSKVIIHPNYNPSTYDNDIAL 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371502106   287 LELEWPIQCPGAGLPVCTPEKDfaeHLLIPRTRGLLSGWARNGTDLGnsltTRPVTLvegeecgQVLNVTVTTRTYCERS 366
Cdd:smart00020  94 LKLKEPVTLSDNVRPICLPSSN---YNVPAGTTCTVSGWGRTSEGAG----SLPDTL-------QEVNVPIVSNATCRRA 159
COG5640 COG5640
Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, ...
 208-422 8.93e-14

Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444365 [Multi-domain]  Cd Length: 262  Bit Score: 70.83  E-value: 8.93e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371502106 208 QDLPWQVKLTNSEGKD--FCGGVIIRENFVLTTAKCSLLHRNITVKTYF---NRTSQDPLMIKITHVHVHMRYDADAGEN 282
Cdd:COG5640   40 GEYPWMVALQSSNGPSgqFCGGTLIAPRWVLTAAHCVDGDGPSDLRVVIgstDLSTSGGTVVKVARIVVHPDYDPATPGN 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371502106 283 DLSLLELEWPIQcPGAGLPVCTPEKDFAehlliPRTRGLLSGWARNGTDLGNSlttrPVTLvegeecgQVLNVTVTTRTY 362
Cdd:COG5640  120 DIALLKLATPVP-GVAPAPLATSADAAA-----PGTPATVAGWGRTSEGPGSQ----SGTL-------RKADVPVVSDAT 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371502106 363 CerssvAAMHWMDGSV---------------------VTREHRGSWFLTGVL--GSQPVGGQAHMVlVTKVSRYSLWFKQ 419
Cdd:COG5640  183 C-----AAYGGFDGGTmlcagypeggkdacqgdsggpLVVKDGGGWVLVGVVswGGGPCAAGYPGV-YTRVSAYRDWIKS 256


                 ...
gi 371502106 420 IMN 422
Cdd:COG5640  257 TAG 259
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 158-187 3.71e-09

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 51.86  E-value: 3.71e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 371502106  158 GCQHFCLPGQESYTCSCAQGYRLGEDHKQC 187
Cdd:pfam14670   7 GCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 117-145 1.68e-06

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 44.55  E-value: 1.68e-06
                         10        20
                 ....*....|....*....|....*....
gi 371502106 117 PCLHNGSCQDSIWGYTCTCSPGYEGSNCE 145
Cdd:cd00054   10 PCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
EGF pfam00008
EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very ...
 113-143 3.60e-05

EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.


Pssm-ID: 394967  Cd Length: 31  Bit Score: 40.44  E-value: 3.60e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 371502106  113 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSN 143
Cdd:pfam00008   1 CAPNPCSNGGTCVDTPGGYTCICPEGYTGKR 31
EGF cd00053
Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large ...
 115-145 5.64e-05

Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.


Pssm-ID: 238010  Cd Length: 36  Bit Score: 40.15  E-value: 5.64e-05
                         10        20        30
                 ....*....|....*....|....*....|..
gi 371502106 115 SQPCLHNGSCQDSIWGYTCTCSPGYEGS-NCE 145
Cdd:cd00053    5 SNPCSNGGTCVNTPGSYRCVCPPGYTGDrSCE 36
EGF_CA smart00179
Calcium-binding EGF-like domain;
117-145 9.35e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 39.54  E-value: 9.35e-05
                           10        20        30
                   ....*....|....*....|....*....|
gi 371502106   117 PCLHNGSCQDSIWGYTCTCSPGYE-GSNCE 145
Cdd:smart00179  10 PCQNGGTCVNTVGSYRCECPPGYTdGRNCE 39
hEGF pfam12661
Human growth factor-like EGF; hEGF, or human growth factor-like EGF, domains have six ...
 118-139 2.00e-03

Human growth factor-like EGF; hEGF, or human growth factor-like EGF, domains have six conserved residues disulfide-bonded into the characteriztic 'ababcc' pattern. They are involved in growth and proliferation of cells, in proteins of the Notch/Delta pathway, neurogulin and selectins. hEGFs are also found in mosaic proteins with four-disulfide laminin EGFs such as aggrecan and perlecan. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal Cys residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In hEGFs the C-terminal thiol resides in the beta-turn, resulting in shorter loop-lengths between the Cys residues of disulfide 'c', typically C[8-9]XC. These shorter loop-lengths are also typical of the four-disulfide EGF domains, laminin ad integrin. Tandem hEGF domains have six linking residues between terminal cysteines of adjacent domains. hEGF domains may or may not bind calcium in the linker region. hEGF domains with the consensus motif CXD4X[F,Y]XCXC are hydroxylated exclusively in the Asp residue.


Pssm-ID: 463660  Cd Length: 22  Bit Score: 35.39  E-value: 2.00e-03
                          10        20
                  ....*....|....*....|..
gi 371502106  118 CLHNGSCQDSIWGYTCTCSPGY 139
Cdd:pfam12661   1 CQNGGTCVDGVNGYKCQCPPGY 22
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 158-185 5.27e-03

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 38.13  E-value: 5.27e-03
                         10        20
                 ....*....|....*....|....*...
gi 371502106 158 GCQHFCLPGQESYTCSCAQGYRLGEDHK 185
Cdd:cd01475  196 VCQQVCISTPGSYLCACTEGYALLEDNK 223
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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